breseq  version 0.35.4  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA 1 4,349 A→G K199E (AAA→GAA)  unknown → ABC‑type Co2+ transport system, periplasmic component
RA 1 5,357 C→T L642L (CTG→CTA)  unknown ← DNA topoisomerase I (EC 5.99.1.2)
RA 1 7,724 C→A W211C (TGG→TGT)  unknown ← FIG00031715: Predicted metal‑dependent phosphoesterases (PHP family)
RA 1 9,584 T→C I830V (ATT→GTT)  unknown ← Membrane alanine aminopeptidase N (EC 3.4.11.2)
RA 1 18,545 C→G A124A (GCC→GCG)  unknown → Inner membrane transport permease YhhJ
RA 1 18,983 T→C S270S (TCT→TCC)  unknown → Inner membrane transport permease YhhJ
RA 1 23,149 A→G N153D (AAC→GAC)  unknown → ABC transporter, substrate‑binding protein (cluster 8, B12/iron complex)
RA 1 36,231 A→C L218V (TTG→GTG)  unknown ← Phenylalanyl‑tRNA synthetase beta chain (EC 6.1.1.20)
RA 1 39,664 A→G intergenic (+372/‑125) unknown → / → unknown hypothetical protein/D‑arabinose‑5‑phosphate isomerase (EC 5.3.1.13)
RA 1 41,640 G→T R65R (CGG→CGT)  unknown → Anthranilate synthase, aminase component (EC 4.1.3.27)
RA 1 43,542 C→A A180E (GCG→GAG)  unknown → Anthranilate synthase, amidotransferase component (EC 4.1.3.27)
RA 1 44,593 G→A T174T (ACG→ACA)  unknown → Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
RA 1 47,452 (C)8→9 coding (141/168 nt) unknown → hypothetical protein
RA 1 49,140 C→T R71R (CGC→CGT)  unknown → Oxaloacetate decarboxylase Na(+) pump, gamma chain (EC 4.1.1.3)
RA 1 49,779 A→C V190V (GTA→GTC)  unknown → Oxaloacetate decarboxylase Na(+) pump, alpha chain (EC 4.1.1.3)
RA 1 50,783 C→A P525Q (CCA→CAA)  unknown → Oxaloacetate decarboxylase Na(+) pump, alpha chain (EC 4.1.1.3)
RA 1 62,158 C→T P367S (CCA→TCA)  unknown → Tryptophan synthase beta chain (EC 4.2.1.20)
RA 1 70,030 A→G L81L (TTG→CTG)  unknown ← Autoinducer 2 (AI‑2) ABC transporter, substrate‑binding protein
RA 1 74,214 A→C K34T (AAA→ACA)  unknown → LsrR, transcriptional repressor of lsr operon
RA 1 78,475 C→T E118K (GAA→AAA)  unknown ← Transcriptional regulator/sugar kinase
RA 1 80,911 T→C N47D (AAC→GAC)  unknown ← Stringent starvation protein B
RA 1 85,404 A→C S298S (TCA→TCC)  unknown → FIG002813: LPPG:FO 2‑phospho‑L‑lactate transferase like, CofD‑like
RA 1 86,553 T→C intergenic (‑17/‑166) unknown ← / → unknown Putative DNA‑binding protein in cluster with Type I restriction‑modification system/Alpha‑aspartyl dipeptidase Peptidase E (EC 3.4.13.21)
RA 1 89,076 (TA)5→4 intergenic (‑112/‑195) unknown ← / → unknown tRNA 4‑thiouridine synthase (EC 2.8.1.4) / Rhodanese‑like domain required for thiamine synthesis/Trimethylamine‑N‑oxide reductase associated c‑type cytochrome, TorY
RA 1 91,000 G→A G190S (GGC→AGC)  unknown → Trimethylamine‑N‑oxide reductase (EC 1.7.2.3), TorZ
RA 1 97,107 C→T intergenic (‑111/+50) unknown ← / ← unknown tRNA pseudouridine(38‑40) synthase (EC 5.4.99.12)/SSU ribosomal protein S9p (S16e)
RA 1 100,944 T→G E1182D (GAA→GAC)  unknown ← Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
RA 1 101,037 C→G A1151A (GCG→GCC)  unknown ← Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
RA 1 113,164 C→T A648T (GCG→ACG)  unknown ← Phosphoglycerate transport system sensor protein PgtB
RA 1 117,369 A→G H3H (CAT→CAC)  unknown ← Translation elongation factor P Lys34 hydroxylase
RA 1 129,583 A→C intergenic (‑177/+106) unknown ← / ← unknown SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Glutamate racemase (EC 5.1.1.3)
RA 1 136,678 C→G R63G (CGC→GGC)  unknown → NAD‑dependent glyceraldehyde‑3‑phosphate dehydrogenase (EC 1.2.1.12)
RA 1 140,293 A→G N90D (AAT→GAT)  unknown → Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)
RA 1 146,560 A→G S34G (AGT→GGT)  unknown → Phospholipid ABC transporter substrate‑binding protein MlaD
RA 1 147,631 C→G F211L (TTC→TTG)  unknown → Phospholipid ABC transporter shuttle protein MlaC
RA 1 155,806 G→A R38H (CGT→CAT)  unknown → DNA mismatch repair endonuclease MutH
RA 1 162,351 C→T intergenic (+186/‑40) unknown → / → unknown GTP‑binding protein TypA/BipA/hypothetical protein
RA 1 166,994 C→T P39L (CCA→CTA)  unknown → Outer membrane beta‑barrel assembly protein BamC
RA 1 171,748 C→T A351T (GCT→ACT)  unknown ← Nicotinamide phosphoribosyltransferase (EC 2.4.2.12)
RA 1 188,610 A→C V374G (GTC→GGC)  unknown ← Uronate isomerase (EC 5.3.1.12)
RA 1 196,324 G→A A567T (GCA→ACA)  unknown → Alpha‑glucosidase (EC 3.2.1.20)
RA 1 201,005 C→T V556I (GTC→ATC)  unknown ← Putative sulfate permease
RA 1 208,260 C→T R335H (CGT→CAT)  unknown ← DNA primase DnaG
RA 1 208,728 T→C E179G (GAG→GGG)  unknown ← DNA primase DnaG
RA 1 211,923 T→C I631V (ATT→GTT)  unknown ← DNA ligase (NAD(+)) (EC 6.5.1.2)
RA 1 215,560 A→G M157V (ATG→GTG)  unknown → Sulfate transporter, CysZ‑type
RA 1 232,334 T→C N201S (AAT→AGT)  unknown ← [Protein‑PII] uridylyltransferase (EC 2.7.7.59) / [Protein‑PII]‑UMP uridylyl‑removing enzyme
RA 1 252,415 T→C H208R (CAC→CGC)  unknown ← ATP‑dependent helicase HrpA
RA 1 262,367 C→T S88S (TCG→TCA)  unknown ← N‑acetylglucosamine‑6‑phosphate deacetylase (EC 3.5.1.25)
RA 1 263,153 C→T D113N (GAT→AAT)  unknown ← Glucosamine‑6‑phosphate deaminase (EC 3.5.99.6)
RA 1 265,981 C→T A105A (GCG→GCA)  unknown ← N‑acetylmannosamine kinase (EC 2.7.1.60)
RA 1 266,926 T→C N30D (AAT→GAT)  unknown ← N‑acetylmannosamine‑6‑phosphate 2‑epimerase (EC 5.1.3.9)
RA 1 267,769 A→G N172S (AAT→AGT)  unknown → TRAP‑type transport system, periplasmic component, predicted N‑acetylneuraminate‑binding protein
RA 1 269,498 A→G Q398Q (CAA→CAG)  unknown → TRAP‑type transport system, small permease component, predicted N‑acetylneuraminate transporter / TRAP‑type transport system, large permease component, predicted N‑acetylneuraminate transporter
RA 1 269,801 A→G A499A (GCA→GCG)  unknown → TRAP‑type transport system, small permease component, predicted N‑acetylneuraminate transporter / TRAP‑type transport system, large permease component, predicted N‑acetylneuraminate transporter
RA 1 270,359 A→G A22A (GCA→GCG)  unknown → N‑acetylneuraminate epimerase (EC 5.1.3.24)
RA 1 271,869 C→T A66V (GCG→GTG)  unknown → PTS system, N‑acetylglucosamine‑specific IIC component / PTS system, N‑acetylglucosamine‑specific IIB component (EC 2.7.1.193)
RA 1 278,004 G→A A265V (GCG→GTG)  unknown ← putative membrane protein
RA 1 283,089 C→T P23P (CCC→CCT)  unknown → DNA topoisomerase IV subunit B (EC 5.99.1.3)
RA 1 318,493 G→A G86D (GGT→GAT)  unknown → Outer membrane receptor proteins, mostly Fe transport
RA 1 318,670 (T)7→5 coding (434‑435/2367 nt) unknown → Outer membrane receptor proteins, mostly Fe transport
RA 1 330,906 T→C E147E (GAA→GAG)  unknown ← Type III restriction‑modification system methylation subunit (EC 2.1.1.72)
RA 1 333,842 T→C I164I (ATT→ATC)  unknown → Manganese ABC transporter, periplasmic‑binding protein SitA
RA 1 345,741 A→G S33S (TCT→TCC)  unknown ← PTS system, IIC component, UlaA‑type
RA 1 353,069 G→A A108A (GCG→GCA)  unknown → Micrococcal nuclease (thermonuclease) homologs
RA 1 353,900 G→A A217T (GCC→ACC)  unknown → Cysteine desulfurase (EC 2.8.1.7) => sulfur transfer pathway protein CsdA
RA 1 355,190 T→C L370L (CTA→CTG)  unknown ← D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167)
RA 1 356,321 T→C intergenic (‑22/‑92) unknown ← / → unknown D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167)/Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241)
RA 1 360,551 C→T K259K (AAG→AAA)  unknown ← probable glucanotransferase (endo alpha‑1,4 polygalactosaminidase related protein)
RA 1 371,895 G→A intergenic (+192/‑218) unknown → / → unknown Aldose 1‑epimerase/FIG000875: Thioredoxin domain‑containing protein EC‑YbbN
RA 1 380,716 A→G T67A (ACC→GCC)  unknown → hypothetical protein
RA 1 412,697 C→A G455W (GGG→TGG)  unknown ← ATP‑dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)
RA 1 412,883 C→T D393N (GAT→AAT)  unknown ← ATP‑dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)
RA 1 414,712 T→C S291G (AGT→GGT)  unknown ← Low‑affinity gluconate/H+ symporter GntU
RA 1 416,262 T→C S155P (TCT→CCT)  unknown → Gluconokinase (EC 2.7.1.12)
MC JC 1 421,394 (TTTG)28→12 coding (40‑103/138 nt) unknown → Sialic acid‑specific 9‑O‑acetylesterase
RA 1 429,851 T→C A333A (GCA→GCG)  unknown ← DNA transposition protein Mup03, A
RA 1 433,815 G→A H356H (CAC→CAT)  unknown ← [NiFe] hydrogenase metallocenter assembly protein HypF
RA 1 443,322 T→G *284E (TAA→GAA)  unknown → Hydrogenase‑4 component G
RA 1 448,259 C→T G373G (GGC→GGT)  unknown → Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine‑containing
RA 1 459,045 T→C L8L (TTA→TTG)  unknown ← L,D‑transpeptidase YcbB
RA 1 462,022 C→T intergenic (‑137/‑81) unknown ← / → unknown RNA chaperone ProQ/Inner membrane protein YebS
RA 1 466,596 A→G V244A (GTG→GCG)  unknown ← Tripeptide aminopeptidase (EC 3.4.11.4)
RA 1 470,168 A→G N206S (AAC→AGC)  unknown → Spermidine/putrescine import ABC transporter permease protein PotC (TC 3.A.1.11.1)
RA 1 470,611 A→G E52E (GAA→GAG)  unknown → Spermidine/putrescine import ABC transporter substrate‑binding protein PotD (TC 3.A.1.11.1)
RA 1 475,340 C→T T356I (ACA→ATA)  unknown → Anaerobic C4‑dicarboxylate transporter DcuB
RA 1 489,426 A→G T159A (ACC→GCC)  unknown → Outer membrane lipoprotein component of lipoprotein transport system LolB
RA 1 496,103 T→C C111R (TGT→CGT)  unknown → Phosphoserine aminotransferase (EC 2.6.1.52)
RA 1 496,948 G→A A7T (GCC→ACC)  unknown → Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)
RA 1 503,224 (A)9→8 intergenic (+48/‑46) unknown → / → unknown DNA polymerase III epsilon subunit (EC 2.7.7.7)/tRNA‑Asp‑GTC
RA 1 512,787 G→A M354I (ATG→ATA)  unknown → Protein translocase subunit SecD
RA 1 520,344 G→A A864T (GCT→ACT)  unknown → Acetaldehyde dehydrogenase (EC 1.2.1.10) / Alcohol dehydrogenase (EC 1.1.1.1)
RA 1 531,550 T→G intergenic (+24/‑105) unknown → / → unknown 5‑deoxy‑glucuronate isomerase (EC 5.3.1.30)/Predicted transcriptional regulator of the myo‑inositol catabolic operon
RA 1 533,643 C→T V267I (GTT→ATT)  unknown ← 5‑keto‑2‑deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain
RA 1 534,607 C→T S28N (AGC→AAC)  unknown ← hypothetical protein
RA 1 540,654 A→G D603D (GAT→GAC)  unknown ← PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197)
RA 1 541,800 G→A N221N (AAC→AAT)  unknown ← PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197)
RA 1 546,771 C→T G970D (GGT→GAT)  unknown ← RTX toxins determinant A and related Ca2+‑binding proteins
RA 1 551,141 G→A intergenic (‑156/+162) unknown ← / ← unknown hypothetical protein/Serine hydroxymethyltransferase (EC 2.1.2.1)
RA 1 557,226 A→G F671F (TTT→TTC)  unknown ← Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)
RA 1 563,552 G→A intergenic (‑16/+1) unknown ← / ← unknown TolA protein/Tol biopolymer transport system, TolR protein
RA 1 566,045 A→G L262P (CTG→CCG)  unknown ← Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.‑)
RA 1 569,982 C→T T86T (ACG→ACA)  unknown ← Holliday junction ATP‑dependent DNA helicase RuvB (EC 3.6.4.12)
RA 1 572,518 T→C T69A (ACG→GCG)  unknown ← Probable transcriptional regulatory protein YebC
JC 1 584,828 +AGTCC intergenic (+76/‑78) unknown → / → unknown Outer membrane receptor proteins, mostly Fe transport/Lactoylglutathione lyase (EC 4.4.1.5)
JC 1 600,171 (CGCCC)2→3 coding (406/642 nt) unknown → Oligopeptide ABC transporter, permease protein OppB (TC 3.A.1.5.1)
RA 1 601,675 A→C *104S (TAG→TCG)  unknown → Oligopeptide ABC transporter, ATP‑binding protein OppD (TC 3.A.1.5.1)
RA 1 602,773 T→C T128T (ACA→ACG)  unknown ← Aerobic respiration control response regulator ArcA
RA 1 604,628 A→G intergenic (‑13/‑130) unknown ← / → unknown Lysine decarboxylase family/Cytochrome c‑type biogenesis protein DsbD, protein‑disulfide reductase (EC 1.8.1.8)
RA 1 606,452 G→A P565P (CCG→CCA)  unknown → Cytochrome c‑type biogenesis protein DsbD, protein‑disulfide reductase (EC 1.8.1.8)
RA 1 607,933 G→A L792F (CTC→TTC)  unknown ← Ribonuclease E (EC 3.1.26.12)
RA 1 613,448 G→A P345L (CCG→CTG)  unknown ← Cystathionine gamma‑synthase (EC 2.5.1.48)
RA 1 614,117 A→G V122A (GTT→GCT)  unknown ← Cystathionine gamma‑synthase (EC 2.5.1.48)
RA 1 618,427 A→G intergenic (+59/+6) unknown → / ← unknown type IV secretion system protein VirB10/hypothetical protein
RA 1 621,719 C→T T3T (ACC→ACT)  unknown → UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase (EC 6.3.2.‑)
RA 1 622,659 C→A R317S (CGT→AGT)  unknown → UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase (EC 6.3.2.‑)
RA 1 627,978 T→G Q2P (CAA→CCA)  unknown ← UPF0234 protein Yitk
RA 1 644,436 C→T D243N (GAT→AAT)  unknown ← Cell envelope opacity‑associated protein A
RA 1 646,223 T→C D44G (GAC→GGC)  unknown ← Lysine 2,3‑aminomutase (EC 5.4.3.2)
RA 1 647,162 A→G V44V (GTA→GTG)  unknown → hypothetical protein
RA 1 652,461 T→C G94G (GGT→GGC)  unknown → Acyl‑CoA:1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase (EC 2.3.1.51) @ Acyl‑ACP:1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase (EC 2.3.1.n4)
JC 1 665,313 +ACC coding (75/564 nt) unknown ← FIG00696199: hypothetical protein
RA 1 665,938 A→G A77A (GCT→GCC)  unknown ← UPF0246 protein YaaA
RA 1 665,983 G→A A62A (GCC→GCT)  unknown ← UPF0246 protein YaaA
RA 1 671,321 T→C C40R (TGC→CGC)  unknown → GTP‑binding protein Era
RA 1 680,844 C→T intergenic (‑9/‑179) unknown ← / → unknown SAM‑dependent methyltransferase HI0095 (UbiE paralog)/Superoxide dismutase [Cu‑Zn] precursor (EC 1.15.1.1)
RA 1 684,996 A→C E515A (GAG→GCG)  unknown → NAD‑dependent malic enzyme (EC 1.1.1.38)
RA 1 685,238 T→A intergenic (+148/+72) unknown → / ← unknown NAD‑dependent malic enzyme (EC 1.1.1.38)/Uncharacterized protein YhiN
RA 1 686,293 T→C M73V (ATG→GTG)  unknown ← Uncharacterized protein YhiN
RA 1 687,774 T→C P103P (CCA→CCG)  unknown ← Cytochrome c‑type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
RA 1 689,388 C→T E200K (GAA→AAA)  unknown ← Cytochrome c‑type heme lyase subunit nrfE, nitrite reductase complex assembly
RA 1 693,785 G→C A229G (GCG→GGG)  unknown ← Cytochrome c552 precursor (EC 1.7.2.2)
RA 1 697,217 G→A P91L (CCA→CTA)  unknown ← Cytochrome c heme lyase subunit CcmL
RA 1 726,543 T→C I11I (ATT→ATC)  unknown → SSU ribosomal protein S15p (S13e)
RA 1 734,088 A→G D333G (GAT→GGT)  unknown → 23S rRNA (adenine(2503)‑C(2))‑methyltransferase @ tRNA (adenine(37)‑C(2))‑methyltransferase (EC 2.1.1.192)
RA 1 734,524 T→C R91R (CGT→CGC)  unknown → Type IV pilus biogenesis protein PilF
RA 1 747,320 G→T A108S (GCC→TCC)  unknown → Dca
RA 1 753,488 T→C L370L (TTA→TTG)  unknown ← Copper‑translocating P‑type ATPase (EC 3.6.3.4)
RA 1 755,436 C→T intergenic (+59/‑240) unknown → / → unknown Transcriptional regulator, MerR family/Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72)
MC JC 1 755,534 (GAAGCCA)5→2 intergenic (+157/‑122) unknown → / → unknown Transcriptional regulator, MerR family/Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72)
RA 1 755,961 T→C intergenic (+1/‑22) unknown → / → unknown Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72)/Type I restriction‑modification system, restriction subunit R (EC 3.1.21.3)
RA 1 762,221 C→T S93S (AGC→AGT)  unknown → TldE protein, part of TldE/TldD proteolytic complex
RA 1 763,501 (T)8→9 intergenic (+197/‑42) unknown → / → unknown TldE protein, part of TldE/TldD proteolytic complex/Hypoxanthine‑guanine phosphoribosyltransferase (EC 2.4.2.8)
RA 1 766,468 G→A A32V (GCG→GTG)  unknown ← D‑glycerate transporter (predicted)
RA 1 772,518 T→C S444G (AGT→GGT)  unknown ← Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
RA 1 772,776 T→C K358E (AAG→GAG)  unknown ← Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
RA 1 788,366 T→C L151L (TTA→TTG)  unknown ← Pantothenate:Na+ symporter (TC 2.A.21.1.1)
RA 1 791,539 G→A R6W (CGG→TGG)  unknown ← hypothetical protein
RA 1 800,797 C→T intergenic (‑8/+93) unknown ← / ← unknown Der GTPase‑activating protein YihI/tRNA‑specific adenosine‑34 deaminase (EC 3.5.4.33)
RA 1 805,870 C→T T142M (ACG→ATG)  unknown → Ribose ABC transporter, ATP‑binding protein RbsA (TC 3.A.1.2.1)
RA 1 812,356 (G)7→6 noncoding (48/77 nt) unknown → tRNA‑Val‑TAC
RA 1 812,453 T→C noncoding (30/76 nt) unknown → tRNA‑Val‑TAC
RA 1 816,907 C→T intergenic (+267/‑222) unknown → / → unknown NADP‑specific glutamate dehydrogenase (EC 1.4.1.4)/Catalase KatE (EC 1.11.1.6)
RA 1 823,824 T→C H146H (CAT→CAC)  unknown → Long‑chain‑fatty‑acid‑‑CoA ligase (EC 6.2.1.3)
RA 1 829,155 G→T D1213Y (GAT→TAT)  unknown → Autotransporter adhesin
RA 1 833,969 C→T intergenic (+173/‑8) unknown → / → unknown Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)/hypothetical protein
RA 1 834,232 G→A intergenic (+136/+7) unknown → / ← unknown hypothetical protein/hypothetical protein
RA 1 842,324 G→A H61H (CAC→CAT)  unknown ← Septum‑associated rare lipoprotein A
RA 1 844,276 A→G V450A (GTC→GCC)  unknown ← Peptidoglycan D,D‑transpeptidase MrdA (EC 3.4.16.4)
RA 1 858,761 C→T V176M (GTG→ATG)  unknown ← 8‑amino‑7‑oxononanoate synthase (EC 2.3.1.47)
RA 1 873,146 G→T A35S (GCG→TCG)  unknown → 3‑oxo‑tetronate kinase
RA 1 876,635 G→A C284Y (TGT→TAT)  unknown → L‑threonate/D‑erythronate, proton symporter
RA 1 876,853 C→T R357C (CGC→TGC)  unknown → L‑threonate/D‑erythronate, proton symporter
RA 1 893,360 (A)6→7 intergenic (+37/‑2) unknown → / → unknown NAD(P)H oxidoreductase YrkL @ Putative NADPH‑quinone reductase (modulator of drug activity B) @ Flavodoxin 2/hypothetical protein
RA 1 895,348 G→A G119G (GGG→GGA)  unknown → Protein translocase subunit SecE
RA 1 907,216 G→A intergenic (+37/+173) unknown → / ← unknown DNA‑directed RNA polymerase beta' subunit (EC 2.7.7.6)/Transposase, IS200 family
RA 1 907,237 G→A intergenic (+58/+152) unknown → / ← unknown DNA‑directed RNA polymerase beta' subunit (EC 2.7.7.6)/Transposase, IS200 family
RA 1 911,719 T→C N71D (AAT→GAT)  unknown ← LSU ribosomal protein L4p (L1e)
RA 1 916,162 A→G A170A (GCA→GCG)  unknown → Short‑chain fatty acids transporter
RA 1 923,696 C→A G337G (GGC→GGA)  unknown → Chloride channel protein
RA 1 936,678 T→C Q301Q (CAA→CAG)  unknown ← 16S rRNA (cytosine(967)‑C(5))‑methyltransferase (EC 2.1.1.176)
RA 1 947,508 C→T intergenic (+12/‑23) unknown → / → unknown Methionine ABC transporter permease protein/Methionine ABC transporter substrate‑binding protein
RA 1 950,081 A→G F154F (TTT→TTC)  unknown ← Membrane protein LAPB
RA 1 953,736 C→T A476A (GCC→GCT)  unknown → hypothetical protein
JC 1 954,509 +AAT coding (225/351 nt) unknown → hypothetical protein
RA 1 957,695 C→T A88T (GCG→ACG)  unknown ← hypothetical protein
RA 1 960,994 A→C S698R (AGT→CGT)  unknown → VgrG protein
RA 1 972,705 A→G S30S (AGT→AGC)  unknown ← hypothetical protein
RA 1 974,867 C→T A227T (GCG→ACG)  unknown ← Mobile element protein
RA 1 976,407 T→C G24G (GGT→GGC)  unknown → AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination
RA 1 979,749 G→A R418R (CGC→CGT)  unknown ← Phosphoglucosamine mutase (EC 5.4.2.10)
RA 1 989,752 T→C S118G (AGT→GGT)  unknown ← Tryptophan‑specific transport protein
RA 1 1,001,876 T→C G373G (GGT→GGC)  unknown → Na+ dependent nucleoside transporter NupC
RA 1 1,007,784 C→T R101W (CGG→TGG)  unknown → Biofilm PGA synthesis N‑glycosyltransferase PgaC (EC 2.4.‑.‑)
RA 1 1,012,663 A→G V415A (GTT→GCT)  unknown ← USG protein
RA 1 1,028,067 G→T G501C (GGC→TGC)  unknown → DNA polymerase I (EC 2.7.7.7)
RA 1 1,031,087 A→G I308T (ATC→ACC)  unknown ← 5'‑nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22)
RA 1 1,031,191 A→G P273P (CCT→CCC)  unknown ← 5'‑nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22)
RA 1 1,036,210 A→G T293A (ACT→GCT)  unknown → ADP‑heptose‑‑lipooligosaccharide heptosyltransferase II
RA 1 1,044,499 C→T H14Y (CAT→TAT)  unknown → Nitrate/nitrite sensor protein NarQ
RA 1 1,065,730 A→G H459R (CAT→CGT)  unknown → TonB‑dependent receptor
RA 1 1,078,174 C→A G449G (GGC→GGA)  unknown → Outer membrane protein assembly factor YaeT
RA 1 1,081,873 A→G I123V (ATT→GTT)  unknown → Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase (EC 2.3.1.129)
RA 1 1,083,347 A→C E323A (GAG→GCG)  unknown → Lipid‑A‑disaccharide synthase (EC 2.4.1.182)
RA 1 1,086,711 A→G T239A (ACG→GCG)  unknown → Phosphatidate cytidylyltransferase (EC 2.7.7.41)
RA 1 1,088,190 G→T I29I (ATC→ATA)  unknown ← hypothetical protein
RA 1 1,092,129 T→C T277T (ACT→ACC)  unknown → Transaldolase (EC 2.2.1.2)
RA 1 1,104,936 G→A intergenic (+22/+130) unknown → / ← unknown Putative exported protein precursor/N‑acetylglucosamine‑1‑phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine‑1‑phosphate N‑acetyltransferase (EC 2.3.1.157)
RA 1 1,105,533 T→C N302D (AAC→GAC)  unknown ← N‑acetylglucosamine‑1‑phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine‑1‑phosphate N‑acetyltransferase (EC 2.3.1.157)
RA 1 1,112,136 C→T T47T (ACC→ACT)  unknown → Glycine/D‑amino acid oxidases (deaminating)
RA 1 1,114,680 G→A P154P (CCG→CCA)  unknown → L‑cystine ABC transporter, permease protein TcyB
RA 1 1,114,905 G→A intergenic (+3/‑7) unknown → / → unknown L‑cystine ABC transporter, permease protein TcyB/L‑cystine ABC transporter, ATP‑binding protein TcyC
RA 1 1,116,486 A→G H75H (CAT→CAC)  unknown ← tRNA 5‑methylaminomethyl‑2‑thiouridine synthase subunit TusD
RA 1 1,130,121 C→T L233L (TTG→TTA)  unknown ← Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11)
RA 1 1,132,478 C→T R101R (CGC→CGT)  unknown → tRNA‑5‑carboxymethylaminomethyl‑2‑ thiouridine(34) synthesis protein MnmG
RA 1 1,136,204 C→T D146D (GAC→GAT)  unknown → 16S rRNA (guanine(527)‑N(7))‑methyltransferase (EC 2.1.1.170)
RA 1 1,145,447 T→C T220T (ACT→ACC)  unknown → Type I restriction‑modification system, restriction subunit R (EC 3.1.21.3)
RA 1 1,148,477 +G coding (665/699 nt)
coding (9/333 nt)
unknown →
unknown →
Uncharacterized protein clustered with Type I restriction‑modification system
Uncharacterized protein clustered with Type I restriction‑modification system
RA 1 1,153,783 C→T G303D (GGT→GAT)  unknown ← PTS system, mannose‑specific IIA component (EC 2.7.1.191) / PTS system, mannose‑specific IIB component (EC 2.7.1.191)
RA 1 1,160,683 A→G R292R (CGT→CGC)  unknown ← D‑xylose ABC transporter, permease protein XylH
RA 1 1,164,774 A→G K129R (AAA→AGA)  unknown → Xylose isomerase (EC 5.3.1.5)
RA 1 1,167,270 G→A intergenic (+40/‑35) unknown → / → unknown Xylulose kinase (EC 2.7.1.17)/tRNA‑SeC(p)‑TCA
RA 1 1,170,184 T→C E24E (GAA→GAG)  unknown ← CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase (EC 2.7.8.8)
RA 1 1,171,071 C→T H211Y (CAC→TAC)  unknown → Uncharacterized tRNA/rRNA methyltransferase YfiF
RA 1 1,172,982 G→A P88P (CCG→CCA)  unknown → Phosphoglycerate kinase (EC 2.7.2.3)
RA 1 1,177,822 A→G N109N (AAT→AAC)  unknown ← Cof protein, HD superfamily hydrolase
RA 1 1,182,597 A→C L117V (TTG→GTG)  unknown ← Phosphoglycolate phosphatase (EC 3.1.3.18)
RA 1 1,185,010 C→A G89G (GGC→GGA)  unknown → 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase (EC 4.6.1.12)
RA 1 1,186,519 C→T A86V (GCG→GTG)  unknown → 5'‑nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11)
RA 1 1,187,147 A→G P39P (CCA→CCG)  unknown → FIG139438: lipoprotein B
JC 1 1,215,447 (TTATT)1→2 coding (104/156 nt) unknown → hypothetical protein
RA 1 1,220,898 G→T D41Y (GAT→TAT)  unknown → FIG00003370: Multicopper polyphenol oxidase
RA 1 1,226,270 A→G I24T (ATC→ACC)  unknown ← Magnesium and cobalt transport protein CorA
RA 1 1,238,857 C→T T90T (ACG→ACA)  unknown ← Lipooligosaccharide biosynthesis protein lex‑1 (EC 2.‑.‑.‑)
RA 1 1,241,126 A→C N259H (AAT→CAT)  unknown → COG0859: ADP‑heptose:LPS heptosyltransferase
RA 1 1,244,031 A→G C198R (TGC→CGC)  unknown ← UPF0758 protein YicR
RA 1 1,253,753 G→T A157S (GCG→TCG)  unknown → Type IV pilus biogenesis protein PilM; Competence protein A
RA 1 1,256,698 T→C D381D (GAT→GAC)  unknown → Type IV pilus biogenesis protein PilQ; Competence protein E
RA 1 1,260,495 A→G P22P (CCA→CCG)  unknown → Excinuclease ABC subunit A
RA 1 1,264,384 A→G H211R (CAC→CGC)  unknown → Mobile element protein
RA 1 1,277,546 A→G D196D (GAT→GAC)  unknown ← Periplasmic chaperone and peptidyl‑prolyl cis‑trans isomerase of outer membrane proteins SurA (EC 5.2.1.8)
RA 1 1,289,948 C→T intergenic (+3/‑1) unknown → / → unknown Ferric siderophore transport system, biopolymer transport protein ExbB/Biopolymer transport protein ExbD/TolR
RA 1 1,294,917 C→A T137K (ACA→AAA)  unknown → hypothetical protein
RA 1 1,307,428 T→C H235R (CAT→CGT)  unknown ← Twin‑arginine translocation protein TatC
RA 1 1,311,241 T→C K84E (AAA→GAA)  unknown ← GMP/IMP nucleotidase YrfG
RA 1 1,317,399 C→T I265I (ATC→ATT)  unknown → 3'(2'),5'‑bisphosphate nucleotidase (EC 3.1.3.7)
RA 1 1,318,262 C→T A256V (GCG→GTG)  unknown → Glucose‑6‑phosphate 1‑dehydrogenase (EC 1.1.1.49)
RA 1 1,319,604 T→C D124D (GAT→GAC)  unknown → 6‑phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
RA 1 1,337,265 T→C H107R (CAC→CGC)  unknown ← (3R)‑hydroxymyristoyl‑[ACP] dehydratase (EC 4.2.1.‑)
RA 1 1,338,166 A→C I162M (ATT→ATG)  unknown ← FIG018329: 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
JC 1 1,338,707 +CAAA coding (157/216 nt) unknown ← FIG018329: 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA 1 1,342,509 T→C T147T (ACA→ACG)  unknown ← Diaminopimelate epimerase (EC 5.1.1.7)
RA 1 1,360,686 C→T D80D (GAC→GAT)  unknown → LSU ribosomal protein L15p (L27Ae)
RA 1 1,363,549 T→C L90L (TTA→CTA)  unknown → SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc‑independent
RA 1 1,365,469 A→G intergenic (+118/‑82) unknown → / → unknown LSU ribosomal protein L17p/Transposase, IS200 family
RA 1 1,365,911 2 bp→GT coding (361‑362/453 nt) unknown → Transposase, IS200 family
RA 1 1,365,917 G→T E123* (GAG→TAG)  unknown → Transposase, IS200 family
RA 1 1,365,978 G→A G143E (GGA→GAA)  unknown → Transposase, IS200 family
RA 1 1,367,978 C→T D142N (GAT→AAT)  unknown ← Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
MC JC 1 1,379,260 (ATATA)2→1 coding (187‑191/192 nt) unknown → Permease of the drug/metabolite transporter (DMT) superfamily
RA 1 1,380,511 T→C S85P (TCA→CCA) 
F3F (TTT→TTC) 
unknown →
unknown →
hypothetical protein
Mobile element protein
RA 1 1,380,664 A→G K54K (AAA→AAG)  unknown → Mobile element protein
RA 1 1,386,377 G→A A75T (GCG→ACG)  unknown → Heat shock protein 10 kDa family chaperone GroES
RA 1 1,392,932 T→G K167N (AAA→AAC)  unknown ← Inactive (p)ppGpp 3'‑pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I
RA 1 1,393,451 T→C R436R (CGA→CGG)  unknown ← 23S rRNA (uracil(1939)‑C(5))‑methyltransferase (EC 2.1.1.190)
RA 1 1,394,811 T→C K212K (AAA→AAG)  unknown ← DNA recombination and repair protein RecO
RA 1 1,397,693 G→A intergenic (‑225/+88) unknown ← / ← unknown SSU ribosomal protein S2p (SAe)/hypothetical protein
RA 1 1,402,387 T→C V37A (GTG→GCG)  unknown → tRNA‑dihydrouridine(16) synthase
RA 1 1,402,896 G→A A131T (GCG→ACG)  unknown → tRNA‑dihydrouridine(16) synthase
RA 1 1,408,031 A→C C90G (TGC→GGC)  unknown ← tRNA (guanine(46)‑N(7))‑methyltransferase (EC 2.1.1.33)
RA 1 1,414,482 A→G S95G (AGC→GGC)  unknown → Na(+)‑translocating NADH‑quinone reductase subunit B (EC 1.6.5.8)
RA 1 1,425,047 G→A T134I (ACC→ATC)  unknown ← 16S rRNA (uracil(1498)‑N(3))‑methyltransferase (EC 2.1.1.193)
RA 1 1,432,417 T→C V106A (GTC→GCC)  unknown → Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)
RA 1 1,438,551 G→A G224S (GGT→AGT)  unknown → Copper‑sensing two‑component system response regulator CpxR
RA 1 1,442,346 G→T T119N (ACC→AAC)  unknown ← Inner membrane protein YihY, formerly thought to be RNase BN
RA 1 1,444,501 T→C A178A (GCT→GCC)  unknown → Uncharacterized protein YjgR
RA 1 1,445,545 T→C intergenic (+78/‑311) unknown → / → unknown Uncharacterized protein YjgR/Tetracenomycin polyketide synthesis O‑methyltransferase TcmP
RA 1 1,446,394 C→T S180L (TCG→TTG)  unknown → Tetracenomycin polyketide synthesis O‑methyltransferase TcmP
RA 1 1,447,747 G→A intergenic (‑156/‑193) unknown ← / → unknown Transcriptional regulator, LysR family/Inner membrane protein forms channel for type IV secretion of T‑DNA complex, VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB4
RA 1 1,448,590 G→C T217T (ACG→ACC)  unknown → Inner membrane protein forms channel for type IV secretion of T‑DNA complex, VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB4
RA 1 1,452,318 G→A L185L (CTG→CTA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,348 A→G L195L (CTA→CTG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,351 C→G G196G (GGC→GGG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,357 C→T I198I (ATC→ATT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,366 T→C T201T (ACT→ACC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,396 T→C N211N (AAT→AAC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,420 T→C S219S (AGT→AGC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,432 C→T N223N (AAC→AAT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,435 C→T G224G (GGC→GGT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,447 A→G T228T (ACA→ACG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,450 A→T A229A (GCA→GCT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,462 A→G L233L (CTA→CTG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,468 C→T S235S (TCC→TCT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,472 T→C L237L (TTA→CTA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,477 G→A R238R (CGG→CGA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,483 G→A K240K (AAG→AAA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,486 T→G P241P (CCT→CCG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,496 C→T L245L (CTG→TTA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,498 G→A L245L (CTG→TTA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,501 T→G L246L (CTT→CTG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,531 T→C D256D (GAT→GAC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,671 A→G H303R (CAC→CGC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,702 C→T I313I (ATC→ATT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,705 G→T V314V (GTG→GTT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,723 C→T H320H (CAC→CAT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,727 T→C Y322H (TAC→CAC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,738 T→C H325H (CAT→CAC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,768 C→T A335A (GCC→GCT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,777 C→T N338N (AAC→AAT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,780 T→G S339S (TCT→TCG)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,789 G→A V342V (GTG→GTA)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,791 A→G D343G (GAT→GGT)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
RA 1 1,452,796 2 bp→TG intergenic (+1/‑1) unknown → / → unknown ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11/Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,452,840 A→C I15L (ATT→CTT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,130 T→C L111L (CTT→CTC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,142 T→G L115L (CTT→CTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,145 T→C L116L (CTT→CTC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,148 C→T R117R (CGC→CGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,160 A→G A121A (GCA→GCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,166 C→T F123F (TTC→TTT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,172 2 bp→AC coding (375‑376/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,178 C→A A127A (GCC→GCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,181 A→G A128A (GCA→GCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,187 C→A T130T (ACC→ACA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,190 A→G R131R (CGA→CGG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,193 T→A G132G (GGT→GGA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,196 G→T G133G (GGG→GGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,200 G→A G135S (GGA→AGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,202 2 bp→CG coding (405‑406/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,214 C→T V139V (GTC→GTT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,217 A→T I140I (ATA→ATT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,220 G→A P141P (CCG→CCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,226 2 bp→GC coding (429‑430/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,229 A→G L144M (TTA→CTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,231 2 bp→CA coding (434‑435/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,236 C→G Q147E (CAA→GAA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,244 A→T S149S (TCA→TCT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,247 T→G V150V (GTT→GTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,256 A→G K153K (AAA→AAG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,259 2 bp→CA coding (462‑463/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,274 T→C C159C (TGT→TGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,280 C→T R161R (CGC→CGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,283 T→C I162I (ATT→ATC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,295 C→T Y166Y (TAC→TAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,298 T→A R167R (CGT→CGA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,310 G→A L171L (TTG→TTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,319 A→G K174K (AAA→AAG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,322 C→A V175V (GTC→GTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,337 A→G P180P (CCA→CCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,349 C→T N184N (AAC→AAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,358 A→G R187R (CGA→CGG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,367 2 bp→GC coding (570‑571/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,394 A→G R199R (CGA→CGG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,397 A→G A200A (GCA→GCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,427 A→T A210A (GCA→GCT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,487 A→G Q230Q (CAA→CAG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,499 G→A V234V (GTG→GTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,544 T→C T249T (ACT→ACC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,552 C→T T252I (ACA→ATA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,559 T→C T254T (ACT→ACC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,562 C→T Y255Y (TAC→TAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,572 C→T L259L (CTA→TTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,577 T→C R260R (CGT→CGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,583 C→T H262H (CAC→CAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,586 A→C A263A (GCA→GCC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,595 C→T D266D (GAC→GAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,601 G→T T268T (ACG→ACT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,613 G→T G272G (GGG→GGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,616 A→G S273S (TCA→TCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,637 G→A A280A (GCG→GCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,643 C→T H282H (CAC→CAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,649 G→C R284R (CGG→CGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,679 A→G Q294Q (CAA→CAG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,685 C→T T296T (ACC→ACT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,718 C→T C307C (TGC→TGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,739 T→C S314S (AGT→AGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,754 T→C T319T (ACT→ACC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,759 C→T T321I (ACC→ATC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,797 C→T H334Y (CAT→TAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,832 C→T A345A (GCC→GCT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,835 G→A L346L (TTG→TTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,839 2 bp→AA coding (1042‑1043/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,871 A→G S358S (TCA→TCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,964 2 bp→AA coding (1167‑1168/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,453,991 C→A L398L (CTC→CTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,000 A→G E401E (GAA→GAG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,009 G→C A404A (GCG→GCC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,015 G→T G406G (GGG→GGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,039 A→G S414S (TCA→TCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,045 A→G G416G (GGA→GGG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,051 T→C I418I (ATT→ATC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,081 C→T I428I (ATC→ATT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,183 C→A A462A (GCC→GCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,192 T→C N465N (AAT→AAC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,204 G→A A469A (GCG→GCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,219 G→A K474K (AAG→AAA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,255 C→T H486H (CAC→CAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,285 C→T I496I (ATC→ATT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,303 G→A P502P (CCG→CCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,306 G→A L503L (TTG→TTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,369 T→C S524S (AGT→AGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,372 G→A K525K (AAG→AAA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,375 A→G P526P (CCA→CCG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,378 2 bp→TA coding (1581‑1582/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,381 G→A L528I (CTG→ATA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,390 A→G K531K (AAA→AAG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,393 G→A A532A (GCG→GCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,396 T→G V533V (GTT→GTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,399 C→T Y534Y (TAC→TAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,402 T→C Y535Y (TAT→TAC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,408 C→T D537D (GAC→GAT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,420 T→A I541I (ATT→ATA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,427 T→C L544L (TTG→CTC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,429 G→C L544L (TTG→CTC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,438 T→A V547V (GTT→GTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,441 C→T S548S (TCC→TCT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,450 A→G L551L (TTA→TTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,453 C→A R552R (CGC→CGA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,457 C→T L554L (CTA→TTA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,462 C→T G555G (GGC→GGT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,465 G→A K556K (AAG→AAA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,477 T→A T560T (ACT→ACA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,482 2 bp→AA coding (1685‑1686/1737 nt) unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,487 C→T L564L (CTG→TTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,498 C→T A567A (GCC→GCT)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,510 T→C G571G (GGT→GGC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,516 C→G L573L (CTC→CTG)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,519 C→A S574S (TCC→TCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,521 C→T A575V (GCC→GTC)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,528 C→A S577S (TCC→TCA)  unknown → Coupling protein VirD4, ATPase required for T‑DNA transfer
RA 1 1,454,535 Δ12 bp intergenic (+1/‑34) unknown → / → unknown Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein
RA 1 1,454,589 T→A F4I (TTT→ATT)  unknown → lipoprotein
RA 1 1,454,605 C→T T9M (ACG→ATG)  unknown → lipoprotein
RA 1 1,454,612 2 bp→AC coding (33‑34/438 nt) unknown → lipoprotein
RA 1 1,454,617 C→T A13V (GCT→GTT)  unknown → lipoprotein
RA 1 1,454,621 T→C C14C (TGT→TGC)  unknown → lipoprotein
RA 1 1,454,638 A→G N20S (AAC→AGC)  unknown → lipoprotein
RA 1 1,454,648 G→A P23P (CCG→CCA)  unknown → lipoprotein
RA 1 1,454,651 G→A P24P (CCG→CCA)  unknown → lipoprotein
RA 1 1,454,660 A→G P27P (CCA→CCG)  unknown → lipoprotein
RA 1 1,454,667 A→G N30D (AAT→GAT)  unknown → lipoprotein
RA 1 1,454,670 G→A E31K (GAA→AAA)  unknown → lipoprotein
RA 1 1,454,678 G→C A33A (GCG→GCC)  unknown → lipoprotein
RA 1 1,454,681 G→A P34P (CCG→CCA)  unknown → lipoprotein
RA 1 1,454,683 C→T A35V (GCA→GTA)  unknown → lipoprotein
RA 1 1,454,688 T→C Y37H (TAT→CAT)  unknown → lipoprotein
RA 1 1,454,704 C→T A42V (GCG→GTG)  unknown → lipoprotein
RA 1 1,454,927 T→C S116S (AGT→AGC)  unknown → lipoprotein
RA 1 1,454,933 T→C N118N (AAT→AAC)  unknown → lipoprotein
RA 1 1,454,939 T→C S120S (AGT→AGC)  unknown → lipoprotein
RA 1 1,454,943 T→C Y122H (TAT→CAC)  unknown → lipoprotein
RA 1 1,454,945 T→C Y122H (TAT→CAC)  unknown → lipoprotein
RA 1 1,454,947 2 bp→CA coding (368‑369/438 nt) unknown → lipoprotein
RA 1 1,454,955 C→T L126M (CTA→TTG)  unknown → lipoprotein
RA 1 1,454,957 A→G L126M (CTA→TTG)  unknown → lipoprotein
RA 1 1,454,972 C→T V131V (GTC→GTT)  unknown → lipoprotein
RA 1 1,454,978 A→T I133I (ATA→ATT)  unknown → lipoprotein
RA 1 1,454,987 G→A R136R (AGG→AGA)  unknown → lipoprotein
RA 1 1,454,989 A→G K137R (AAA→AGA)  unknown → lipoprotein
RA 1 1,455,021 T→C intergenic (+4/‑28) unknown → / → unknown lipoprotein/IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,023 G→C intergenic (+6/‑26) unknown → / → unknown lipoprotein/IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,027 A→G intergenic (+10/‑22) unknown → / → unknown lipoprotein/IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,030 C→A intergenic (+13/‑19) unknown → / → unknown lipoprotein/IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,032 T→G intergenic (+15/‑17) unknown → / → unknown lipoprotein/IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,039 T→C intergenic (+22/‑10) unknown → / → unknown lipoprotein/IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,057 2 bp→GG coding (9‑10/285 nt) unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,063 C→T S5S (AGC→AGT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,069 G→T A7A (GCG→GCT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,072 G→A V8V (GTG→GTA)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,093 C→G T15T (ACC→ACG)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,102 C→T A18A (GCC→GCT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,231 C→T N61N (AAC→AAT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,241 C→T L65M (CTA→TTG)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,243 A→G L65M (CTA→TTG)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,246 C→T C66C (TGC→TGT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,249 2 bp→AA coding (201‑202/285 nt) unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,253 G→T A69S (GCT→TCT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,257 2 bp→AC coding (209‑210/285 nt) unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,261 T→G D71E (GAT→GAG)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,264 T→C D72D (GAT→GAC)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,267 2 bp→TA coding (219‑220/285 nt) unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,270 G→T V74I (GTG→ATT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,273 C→T N75N (AAC→AAT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,276 G→A Q76Q (CAG→CAA)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,279 T→A A77A (GCT→GCA)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,285 T→G S79S (TCT→TCG)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,287 2 bp→GC coding (239‑240/285 nt) unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,309 C→T F87F (TTC→TTT)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,317 A→G K90R (AAA→AGA)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,324 A→G I92M (ATA→ATG)  unknown → IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)
RA 1 1,455,343 C→T intergenic (+10/+70) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,345 C→T intergenic (+12/+68) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,347 2 bp→CT intergenic (+14/+65) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,352 A→G intergenic (+19/+61) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,368 3 bp→ATT intergenic (+35/+43) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,378 G→A intergenic (+45/+35) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,392 (T)5→6 intergenic (+59/+21) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,405 A→C intergenic (+72/+8) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,409 A→C intergenic (+76/+4) unknown → / ← unknown IncQ plasmid conjugative transfer protein TraQ (RP4 TrbM homolog)/conserved hypothetical protein
RA 1 1,455,428 A→C R90R (CGT→CGG)  unknown ← conserved hypothetical protein
RA 1 1,455,440 C→T L86L (TTG→TTA)  unknown ← conserved hypothetical protein
RA 1 1,455,465 C→T G78D (GGC→GAC)  unknown ← conserved hypothetical protein
RA 1 1,455,500 T→C K66K (AAA→AAG)  unknown ← conserved hypothetical protein
RA 1 1,455,590 G→A R36R (CGC→CGT)  unknown ← conserved hypothetical protein
RA 1 1,455,601 C→T V33I (GTT→ATT)  unknown ← conserved hypothetical protein
RA 1 1,455,606 C→T R31K (AGG→AAG)  unknown ← conserved hypothetical protein
RA 1 1,455,632 A→G R22R (CGT→CGC)  unknown ← conserved hypothetical protein
RA 1 1,455,653 T→C Q15Q (CAA→CAG)  unknown ← conserved hypothetical protein
RA 1 1,455,656 T→C E14E (GAA→GAG)  unknown ← conserved hypothetical protein
RA 1 1,455,669 A→G M10T (ATG→ACG)  unknown ← conserved hypothetical protein
RA 1 1,455,677 T→C V7V (GTA→GTG)  unknown ← conserved hypothetical protein
RA 1 1,455,691 A→G L3L (TTG→CTG)  unknown ← conserved hypothetical protein
RA 1 1,455,704 C→T G53D (GGC→GAC)  unknown ← hypothetical protein
RA 1 1,455,715 T→C E49E (GAA→GAG)  unknown ← hypothetical protein
RA 1 1,455,730 T→C V44V (GTA→GTG)  unknown ← hypothetical protein
RA 1 1,455,742 G→A S40S (TCC→TCT)  unknown ← hypothetical protein
RA 1 1,455,748 G→A V38V (GTC→GTT)  unknown ← hypothetical protein
RA 1 1,455,771 G→A L31L (CTA→TTA)  unknown ← hypothetical protein
RA 1 1,455,775 T→A A29A (GCA→GCT)  unknown ← hypothetical protein
RA 1 1,455,784 T→C L26L (TTA→TTG)  unknown ← hypothetical protein
RA 1 1,455,787 2 bp→TA coding (74‑75/168 nt) unknown ← hypothetical protein
RA 1 1,455,802 C→T T20T (ACG→ACA)  unknown ← hypothetical protein
RA 1 1,455,811 T→C Q17Q (CAA→CAG)  unknown ← hypothetical protein
RA 1 1,455,814 T→C P16P (CCA→CCG)  unknown ← hypothetical protein
RA 1 1,455,820 G→A Y14Y (TAC→TAT)  unknown ← hypothetical protein
RA 1 1,455,826 A→G D12D (GAT→GAC)  unknown ← hypothetical protein
RA 1 1,455,832 A→G R10R (CGT→CGC)  unknown ← hypothetical protein
RA 1 1,455,835 A→G Y9Y (TAT→TAC)  unknown ← hypothetical protein
RA 1 1,455,839 2 bp→G coding (22‑23/168 nt) unknown ← hypothetical protein
RA 1 1,455,845 +T coding (17/168 nt) unknown ← hypothetical protein
RA 1 1,455,847 2 bp→CA coding (14‑15/168 nt) unknown ← hypothetical protein
RA 1 1,455,855 A→G L3L (TTA→CTA)  unknown ← hypothetical protein
RA 1 1,455,952 A→G intergenic (‑91/‑321) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,455,955 C→T intergenic (‑94/‑318) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,455,963 T→C intergenic (‑102/‑310) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,455,979 T→C intergenic (‑118/‑294) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,456,019 T→C intergenic (‑158/‑254) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,456,085 2 bp→TG intergenic (‑224/‑187) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,456,088 T→C intergenic (‑227/‑185) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,456,097 C→T intergenic (‑236/‑176) unknown ← / → unknown hypothetical protein/ParA‑like protein
RA 1 1,456,308 T→C G12G (GGT→GGC)  unknown → ParA‑like protein
RA 1 1,456,311 C→T S13S (AGC→AGT)  unknown → ParA‑like protein
RA 1 1,456,320 T→C S16S (AGT→AGC)  unknown → ParA‑like protein
RA 1 1,456,326 C→T L18L (CTC→CTT)  unknown → ParA‑like protein
RA 1 1,456,329 A→T S19S (TCA→TCT)  unknown → ParA‑like protein
RA 1 1,456,332 T→C I20I (ATT→ATC)  unknown → ParA‑like protein
RA 1 1,456,338 C→T I22I (ATC→ATT)  unknown → ParA‑like protein
RA 1 1,456,341 T→C A23A (GCT→GCC)  unknown → ParA‑like protein
RA 1 1,456,344 T→C R24R (CGT→CGC)  unknown → ParA‑like protein
RA 1 1,456,347 2 bp→CC coding (75‑76/642 nt) unknown → ParA‑like protein
RA 1 1,456,353 G→A Q27Q (CAG→CAA)  unknown → ParA‑like protein
RA 1 1,456,356 C→T L28L (CTC→CTT)  unknown → ParA‑like protein
RA 1 1,456,361 2 bp→GC coding (89‑90/642 nt) unknown → ParA‑like protein
RA 1 1,456,368 A→T E32D (GAA→GAT)  unknown → ParA‑like protein
RA 1 1,456,371 G→C V33V (GTG→GTC)  unknown → ParA‑like protein
RA 1 1,456,383 C→T D37D (GAC→GAT)  unknown → ParA‑like protein
RA 1 1,456,392 G→A P40P (CCG→CCA)  unknown → ParA‑like protein
RA 1 1,456,410 A→G E46E (GAA→GAG)  unknown → ParA‑like protein
RA 1 1,456,422 T→C L50L (CTT→CTC)  unknown → ParA‑like protein
RA 1 1,456,434 T→C D54D (GAT→GAC)  unknown → ParA‑like protein
RA 1 1,456,467 C→T L65L (CTC→CTT)  unknown → ParA‑like protein
RA 1 1,456,483 C→A R71R (CGT→AGG)  unknown → ParA‑like protein
RA 1 1,456,485 T→G R71R (CGT→AGG)  unknown → ParA‑like protein
RA 1 1,456,487 C→T A72V (GCG→GTG)  unknown → ParA‑like protein
RA 1 1,456,500 A→G Q76Q (CAA→CAG)  unknown → ParA‑like protein
RA 1 1,456,515 C→T I81I (ATC→ATT)  unknown → ParA‑like protein
RA 1 1,456,524 T→A G84G (GGT→GGA)  unknown → ParA‑like protein
RA 1 1,456,527 G→T A85A (GCG→GCT)  unknown → ParA‑like protein
RA 1 1,456,530 A→C P86P (CCA→CCC)  unknown → ParA‑like protein
RA 1 1,456,533 T→C R87R (CGT→CGC)  unknown → ParA‑like protein
RA 1 1,456,584 T→C I104I (ATT→ATC)  unknown → ParA‑like protein
RA 1 1,456,629 A→G S119S (TCA→TCG)  unknown → ParA‑like protein
RA 1 1,456,632 T→A I120I (ATT→ATA)  unknown → ParA‑like protein
RA 1 1,456,677 C→G A135A (GCC→GCG)  unknown → ParA‑like protein
RA 1 1,456,680 G→T G136G (GGG→GGT)  unknown → ParA‑like protein
RA 1 1,456,698 G→A T142T (ACG→ACA)  unknown → ParA‑like protein
RA 1 1,456,704 2 bp→AC coding (432‑433/642 nt) unknown → ParA‑like protein
RA 1 1,456,707 G→A K145Q (AAG→CAA)  unknown → ParA‑like protein
RA 1 1,456,710 A→C T146T (ACA→ACC)  unknown → ParA‑like protein
RA 1 1,456,719 T→A A149A (GCT→GCA)  unknown → ParA‑like protein
RA 1 1,456,725 A→T E151D (GAA→GAT)  unknown → ParA‑like protein
RA 1 1,456,732 2 bp→GA coding (460‑461/642 nt) unknown → ParA‑like protein
RA 1 1,456,740 C→T I156I (ATC→ATT)  unknown → ParA‑like protein
RA 1 1,456,743 C→A N157K (AAC→AAA)  unknown → ParA‑like protein
RA 1 1,456,746 A→T E158D (GAA→GAT)  unknown → ParA‑like protein
RA 1 1,456,758 A→T I162I (ATA→ATT)  unknown → ParA‑like protein
RA 1 1,456,768 A→G K166E (AAG→GAA)  unknown → ParA‑like protein
RA 1 1,456,770 G→A K166E (AAG→GAA)  unknown → ParA‑like protein
RA 1 1,456,773 T→C G167G (GGT→GGC)  unknown → ParA‑like protein
RA 1 1,456,779 2 bp→AA coding (507‑508/642 nt) unknown → ParA‑like protein
RA 1 1,456,785 A→T V171V (GTA→GTT)  unknown → ParA‑like protein
RA 1 1,456,800 A→C A176A (GCA→GCC)  unknown → ParA‑like protein
RA 1 1,456,806 C→A V178V (GTC→GTA)  unknown → ParA‑like protein
RA 1 1,456,812 T→C S180S (AGT→AGC)  unknown → ParA‑like protein
RA 1 1,456,818 T→C G182G (GGT→GGC)  unknown → ParA‑like protein
RA 1 1,456,892 C→T A207V (GCA→GTA)  unknown → ParA‑like protein
RA 1 1,456,927 T→C G7G (GGT→GGC)  unknown → hypothetical protein
RA 1 1,456,972 G→A T22T (ACG→ACA)  unknown → hypothetical protein
RA 1 1,460,978 (A)6→7 intergenic (‑31/+23) unknown ← / ← unknown Glutamine‑‑fructose‑6‑phosphate aminotransferase [isomerizing] (EC 2.6.1.16)/Transcriptional regulator of glmS gene, DeoR family
RA 1 1,471,305 G→A H560Y (CAT→TAT)  unknown ← Inner membrane component of TAM transport system
RA 1 1,475,136 T→C K144E (AAA→GAA)  unknown ← Nitrate/nitrite response regulator protein NarP
RA 1 1,481,912 T→C L190L (TTA→CTA)  unknown → Uncharacterized protein EC‑HemY in Proteobacteria (unrelated to HemY‑type PPO in GramPositives)
RA 1 1,491,671 T→C M719T (ATG→ACG)  unknown → Transcription accessory protein (S1 RNA‑binding domain)
RA 1 1,504,237 T→G E31A (GAA→GCA)  unknown ← ATP‑dependent DNA helicase RecQ
RA 1 1,508,079 A→G S150G (AGC→GGC)  unknown → LPS‑assembly protein LptD @ Organic solvent tolerance protein precursor
RA 1 1,509,997 (A)10→9 intergenic (+23/+69) unknown → / ← unknown LPS‑assembly protein LptD @ Organic solvent tolerance protein precursor/Xanthine‑guanine phosphoribosyltransferase (EC 2.4.2.22)
RA 1 1,517,170 A→G F519F (TTT→TTC)  unknown ← Prolyl‑tRNA synthetase (EC 6.1.1.15), bacterial type
RA 1 1,519,586 T→C D239D (GAT→GAC)  unknown → L‑seryl‑tRNA(Sec) selenium transferase (EC 2.9.1.1)
RA 1 1,522,681 T→C T172T (ACT→ACC)  unknown → Chromosome segregation ATPases
RA 1 1,539,574 Δ1 bp intergenic (‑111/‑403) unknown ← / → unknown Flp pilus assembly protein, pilin Flp/Phosphate starvation‑inducible protein PhoH, predicted ATPase
RA 1 1,542,820 C→T P426L (CCG→CTG)  unknown → tRNA cytosine(34) acetyltransferase (EC 2.3.1.193)
RA 1 1,543,625 C→T L40F (CTC→TTC)  unknown → hypothetical protein
RA 1 1,546,797 C→T T888I (ACC→ATC)  unknown → Transcription‑repair coupling factor
RA 1 1,549,549 T→C V125V (GTT→GTC)  unknown → Arginine ABC transporter, substrate‑binding protein ArtI
RA 1 1,562,144 G→A A276T (GCG→ACG)  unknown → UDP‑N‑acetylmuramoyl‑L‑alanine‑‑D‑glutamate ligase (EC 6.3.2.9)
RA 1 1,562,859 C→T F74F (TTC→TTT)  unknown → Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)
RA 1 1,563,338 A→C D234A (GAT→GCT)  unknown → Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)
RA 1 1,572,599 A→G H209R (CAC→CGC)  unknown → Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)
RA 1 1,572,682 A→G M237V (ATG→GTG)  unknown → Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)
RA 1 1,581,320 T→C R37R (CGT→CGC)  unknown → Queuosine Biosynthesis QueC ATPase
RA 1 1,582,671 A→G I156M (ATA→ATG)  unknown → ATPase
RA 1 1,588,305 A→G H88H (CAT→CAC)  unknown ← Fumarate reductase iron‑sulfur protein (EC 1.3.5.4)
RA 1 1,592,325 T→C S57G (AGC→GGC)  unknown ← Iron(III) dicitrate transport ATP‑binding protein FecE (TC 3.A.1.14.1)
RA 1 1,597,355 A→G V86V (GTA→GTG)  unknown → Recombination protein RecR
RA 1 1,609,691 C→T S238N (AGC→AAC)  unknown ← NAD kinase (EC 2.7.1.23)
RA 1 1,613,290 G→A S453F (TCT→TTT)  unknown ← tRNA (5‑methylaminomethyl‑2‑thiouridylate)‑methyltransferase (EC 2.1.1.61) / FAD‑dependent cmnm(5)s(2)U34 oxidoreductase
RA 1 1,614,103 G→A P182L (CCC→CTC)  unknown ← tRNA (5‑methylaminomethyl‑2‑thiouridylate)‑methyltransferase (EC 2.1.1.61) / FAD‑dependent cmnm(5)s(2)U34 oxidoreductase
RA 1 1,620,924 G→A G270G (GGC→GGT)  unknown ← Galactose/methyl galactoside ABC transporter, substrate‑binding protein MglB (EC 3.6.3.17)
RA 1 1,621,060 C→T S225N (AGT→AAT)  unknown ← Galactose/methyl galactoside ABC transporter, substrate‑binding protein MglB (EC 3.6.3.17)
RA 1 1,623,682 T→C A136A (GCT→GCC)  unknown → Galactose‑1‑phosphate uridylyltransferase (EC 2.7.7.10)
RA 1 1,635,734 T→C L66L (TTG→CTG)  unknown → Magnesium and cobalt efflux protein CorC
RA 1 1,644,865 C→T F531F (TTC→TTT)  unknown → Methionyl‑tRNA synthetase (EC 6.1.1.10)
JC 1 1,646,885 +GTACTTCGT coding (980/1851 nt) unknown ← Chaperone protein HscA
RA 1 1,651,779 C→T T27T (ACG→ACA)  unknown ← tRNA (cytidine(32)/uridine(32)‑2'‑O)‑methyltransferase (EC 2.1.1.200)
RA 1 1,660,004 A→G T214T (ACT→ACC)  unknown ← Ferric iron ABC transporter, iron‑binding protein
RA 1 1,673,856 G→A G131S (GGT→AGT)  unknown → Glutaredoxin 2
RA 1 1,676,717 G→A R232Q (CGG→CAG)  unknown → Cytolethal distending toxin subunit B, DNase I‑like
RA 1 1,676,780 C→T A253V (GCA→GTA)  unknown → Cytolethal distending toxin subunit B, DNase I‑like
RA 1 1,688,650 T→C C16C (TGT→TGC)  unknown → hypothetical protein
RA 1 1,692,930 A→C P326P (CCT→CCG)  unknown ← putative membrane protein
RA 1 1,694,421 A→C S79A (TCT→GCT)  unknown ← hypothetical protein
RA 1 1,701,163 C→T T34T (ACG→ACA)  unknown ← hypothetical protein
RA 1 1,703,451 A→C *739E (TAA→GAA)  unknown ← Type IV secretory pathway, VirD4 components
RA 1 1,707,063 C→A A197S (GCC→TCC)  unknown ← probable exported protein STY4558
RA 1 1,707,584 G→A T23I (ACA→ATA)  unknown ← probable exported protein STY4558
RA 1 1,714,815 C→A E245* (GAG→TAG)  unknown ← DNA topoisomerase III (EC 5.99.1.2) in PFGI‑1‑like cluster
RA 1 1,714,984 C→T K188K (AAG→AAA)  unknown ← DNA topoisomerase III (EC 5.99.1.2) in PFGI‑1‑like cluster
RA 1 1,715,684 T→C E42G (GAA→GGA)  unknown ← hypothetical protein
RA 1 1,716,857 T→C I243T (ATA→ACA)  unknown → hypothetical protein
MC JC 1 1,723,309 Δ36 bp intergenic (‑42/+98) unknown ← / ← unknown hypothetical protein/FIG141751: hypothetical protein in PFGI‑1‑like cluster
RA 1 1,728,189 Δ1 bp coding (38/1128 nt)|coding (288/291 nt) unknown ←
unknown ←
Replicative DNA helicase (EC 3.6.4.12) in PFGI‑1‑like cluster
Replicative DNA helicase (EC 3.6.4.12) in PFGI‑1‑like cluster
RA 1 1,732,516 G→A R153K (AGA→AAA)  unknown → hypothetical protein
RA 1 1,738,050 G→A G248D (GGT→GAT)  unknown → GTP‑binding protein
RA 1 1,738,428 A→G K374R (AAA→AGA)  unknown → GTP‑binding protein
RA 1 1,745,617 T→C Y133Y (TAT→TAC)  unknown → Cell wall‑associated hydrolases (invasion‑associated proteins)
RA 1 1,747,914 T→C *156* (TAA→TGA)  unknown ← Phosphohistidine phosphatase SixA
RA 1 1,757,258 T→C K86K (AAA→AAG)  unknown ← Inosine‑5'‑monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain
RA 1 1,775,066 T→G M196L (ATG→CTG)  unknown ← tRNA dimethylallyltransferase (EC 2.5.1.75)
RA 1 1,776,164 G→A I451I (ATC→ATT)  unknown ← DNA mismatch repair protein MutL
RA 1 1,776,460 C→T E353K (GAA→AAA)  unknown ← DNA mismatch repair protein MutL
RA 1 1,791,283 T→C V104V (GTT→GTC)  unknown → PTS system, glucose‑specific IIA component (EC 2.7.1.199)
RA 1 1,792,162 T→C V492V (GTA→GTG)  unknown ← Oligopeptidase A (EC 3.4.24.70)
RA 1 1,795,802 A→G intergenic (+64/+211) unknown → / ← unknown Oligopeptide ABC transporter, substrate‑binding protein OppA (TC 3.A.1.5.1)/Aminodeoxychorismate lyase (EC 4.1.3.38)
RA 1 1,799,664 A→G intergenic (+39/‑224) unknown → / → unknown hypothetical protein/Lipoprotein releasing system transmembrane protein LolC
RA 1 1,809,178 C→T R11R (CGC→CGT)  unknown → Transcription termination protein NusB
RA 1 1,810,410 T→C L274P (CTT→CCT)  unknown → Thiamine‑monophosphate kinase (EC 2.7.4.16)
RA 1 1,810,912 C→T C110C (TGC→TGT)  unknown → Phosphatidylglycerophosphatase A (EC 3.1.3.27)
RA 1 1,817,609 T→C I6M (ATA→ATG)  unknown ← Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
RA 1 1,824,201 T→C S574G (AGC→GGC)  unknown ← Periplasmic alpha‑amylase (EC 3.2.1.1)
RA 1 1,828,592 G→A intergenic (‑121/+3) unknown ← / ← unknown Maltodextrin ABC transporter, permease protein MdxF/Maltodextrin ABC transporter, substrate‑binding protein MdxE
RA 1 1,828,959 C→T G276D (GGT→GAT)  unknown ← Maltodextrin ABC transporter, substrate‑binding protein MdxE
RA 1 1,831,318 T→C D359D (GAT→GAC)  unknown → Maltose/maltodextrin transport ATP‑binding protein MalK (EC 3.6.3.19)
RA 1 1,832,324 A→T L296F (TTA→TTT)  unknown → Maltoporin (maltose/maltodextrin high‑affinity receptor, phage lambda receptor protein)
RA 1 1,848,112 T→C V426A (GTA→GCA)  unknown → TldD protein, part of TldE/TldD proteolytic complex
RA 1 1,852,814 G→A D1494N (GAC→AAC)  unknown → Large extracellular alpha‑helical protein
RA 1 1,867,246 C→T S8F (TCC→TTC)  unknown → Oxygen‑insensitive NADPH nitroreductase (EC 1.‑.‑.‑)
RA 1 1,873,656 A→G V225V (GTA→GTG)  unknown → Valyl‑tRNA synthetase (EC 6.1.1.9)
RA 1 1,874,198 A→G D406G (GAC→GGC)  unknown → Valyl‑tRNA synthetase (EC 6.1.1.9)
RA 1 1,876,492 T→C *194Q (TAA→CAA)  unknown → hypothetical protein
RA 1 1,877,073 T→C T101A (ACG→GCG)  unknown ← Toxin HigB / Protein kinase domain of HipA
RA 1 1,879,885 T→C P217P (CCA→CCG)  unknown ← Multidrug efflux system EmrAB‑OMF, membrane fusion component EmrA
RA 1 1,885,636 G→A P77L (CCA→CTA)  unknown ← 7‑carboxy‑7‑deazaguanine synthase (EC 4.3.99.3)
RA 1 1,892,300 G→A V171V (GTG→GTA)  unknown → Thiol‑disulfide isomerase and thioredoxins
RA 1 1,892,762 C→T A104V (GCC→GTC)  unknown → 5'‑methylthioadenosine nucleosidase (EC 3.2.2.16) @ S‑adenosylhomocysteine nucleosidase (EC 3.2.2.9)
RA 1 1,894,557 C→T P11S (CCG→TCG)  unknown → Substrate‑specific component NikM of nickel ECF transporter
RA 1 1,920,292 T→C I138T (ATT→ACT)  unknown → hypothetical protein
RA 1 1,920,474 A→G I199V (ATA→GTA)  unknown → hypothetical protein
RA 1 1,930,360 C→A S133S (TCC→TCA)  unknown → Sodium‑dependent transporter, SNF family
RA 1 1,950,170 C→T D166N (GAT→AAT)  unknown ← Nucleoside‑diphosphate‑sugar epimerases
RA 1 1,954,742 A→G I556T (ATT→ACT)  unknown ← Glutamine synthetase adenylyl‑L‑tyrosine phosphorylase (EC 2.7.7.89) / Glutamate‑ammonia‑ligase adenylyltransferase (EC 2.7.7.42)
RA 1 1,957,279 A→G G150G (GGA→GGG)  unknown → CRISPR‑associated helicase Cas3
RA 1 1,959,453 A→G T34A (ACC→GCC)  unknown → CRISPR‑associated protein Cas5
MC JC 1 1,965,734 Δ68 bp intergenic (+224/‑409) unknown → / → unknown CRISPR‑associated protein Cas2/hypothetical protein
RA 1 1,967,630 G→A T333T (ACG→ACA)  unknown → Thiamin ABC transporter, substrate‑binding component
RA 1 1,968,516 T→C V291A (GTG→GCG)  unknown → Thiamin ABC transporter, transmembrane component
RA 1 1,978,638 G→T I193I (ATC→ATA)  unknown ← FIG005121: SAM‑dependent methyltransferase (EC 2.1.1.‑)
RA 1 1,979,707 T→C T157T (ACT→ACC)  unknown → Hydroxyacylglutathione hydrolase (EC 3.1.2.6)
RA 1 1,993,820 T→C intergenic (+32/‑162) unknown → / → unknown 5‑hydroxyisourate hydrolase (EC 3.5.2.17)/hypothetical protein
RA 1 2,002,598 A→C E38A (GAA→GCA)  unknown → Chromosome segregation ATPase
RA 1 2,002,920 T→C D145D (GAT→GAC)  unknown → Chromosome segregation ATPase
RA 1 2,003,214 T→C A243A (GCT→GCC)  unknown → Chromosome segregation ATPase
RA 1 2,006,005 G→T P176T (CCT→ACT)  unknown ← GMP synthase [glutamine‑hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine‑hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)
JC 1 2,013,791 (CACCT)8→5 intergenic (+150/‑146) unknown → / → unknown Translation initiation factor 2/Type III restriction‑modification system methylation subunit (EC 2.1.1.72)
RA 1 2,016,888 T→C V230A (GTA→GCA)  unknown → Superfamily II DNA/RNA helicases, SNF2 family
RA 1 2,019,248 G→A T196I (ACA→ATA)  unknown ← hypothetical protein
RA 1 2,022,295 G→T intergenic (‑174/‑119) unknown ← / → unknown Sugar fermentation stimulation protein SfsA/NAD(P) transhydrogenase N‑domain of subunit alpha (EC 1.6.1.2) / NAD(P) transhydrogenase C‑domain of subunit alpha (EC 1.6.1.2)
RA 1 2,032,654 T→C T249T (ACT→ACC)  unknown → Possible ABC transporter, periplasmic substrate X binding protein precursor
RA 1 2,033,676 C→T D514N (GAC→AAC)  unknown ← Excinuclease ABC subunit C
RA 1 2,041,723 G→A intergenic (‑305/‑122) unknown ← / → unknown DNA internalization‑related competence protein ComEC/Rec2/RNA polymerase‑binding transcription factor DksA
RA 1 2,044,127 T→G G90G (GGT→GGG)  unknown → 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)
RA 1 2,044,130 G→A E91E (GAG→GAA)  unknown → 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)
RA 1 2,057,097 T→C L744L (TTG→CTG)  unknown → Transcriptional activator of maltose regulon, MalT
RA 1 2,064,103 A→C I222I (ATA→ATC)  unknown → Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
RA 1 2,068,186 C→A intergenic (+91/‑7) unknown → / → unknown Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)/Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)
RA 1 2,071,788 (C)7→9 intergenic (+55/‑30) unknown → / → unknown Cys regulon transcriptional activator CysB/2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase (EC 2.3.1.117)
RA 1 2,075,647 T→C P104P (CCA→CCG)  unknown ← Homoserine O‑acetyltransferase (EC 2.3.1.31)
RA 1 2,078,949 A→C intergenic (+23/+13) unknown → / ← unknown FIG00699498: hypothetical protein/hypothetical protein
RA 1 2,080,918 T→C I107V (ATA→GTA)  unknown ← Cytochrome c‑type biogenesis protein CcdA homolog, associated with MetSO reductase
RA 1 2,095,202 T→C A37A (GCT→GCC)  unknown → Threonyl‑tRNA synthetase (EC 6.1.1.3)
RA 1 2,098,566 A→G T217T (ACT→ACC)  unknown ← Ferredoxin‑‑NADP(+) reductase (EC 1.18.1.2)
RA 1 2,133,001 G→T A29S (GCC→TCC)  unknown → Limit dextrin alpha‑1,6‑maltotetraose‑hydrolase (EC 3.2.1.196)
RA 1 2,133,627 G→A S237S (TCG→TCA)  unknown → Limit dextrin alpha‑1,6‑maltotetraose‑hydrolase (EC 3.2.1.196)
RA 1 2,138,607 T→C I194T (ATT→ACT)  unknown → Glycogen phosphorylase (EC 2.4.1.1)
RA 1 2,143,665 T→C intergenic (+163/‑5) unknown → / → unknown Murein‑DD‑endopeptidase (EC 3.4.99.‑)/Chromosome partition protein MukF
RA 1 2,154,691 C→T A242A (GCC→GCT)  unknown → Integral membrane protein
MC 2 1 Δ4,576 bp unknown–unknown unknown, unknown, unknown, unknown, unknown, unknown, unknown, unknown
RA 3 1,745 T→C S276S (TCT→TCC)  unknown → Type II secretory pathway, component PulD
RA 3 1,754 T→C Y279Y (TAT→TAC)  unknown → Type II secretory pathway, component PulD
RA 3 1,970 C→T G351G (GGC→GGT)  unknown → Type II secretory pathway, component PulD
RA 4 207 C→T S69S (AGC→AGT)  unknown → putative phage‑related membrane protein
RA 4 213 T→C Y71Y (TAT→TAC)  unknown → putative phage‑related membrane protein
RA 4 234 C→T R78R (CGC→CGT)  unknown → putative phage‑related membrane protein
RA 4 237 C→T R79R (CGC→CGT)  unknown → putative phage‑related membrane protein
RA 4 289 A→T I9I (ATA→ATT)  unknown → Type II secretory pathway, component PulD
RA 4 295 T→C G11G (GGT→GGC)  unknown → Type II secretory pathway, component PulD
RA 4 316 T→G V18V (GTT→GTG)  unknown → Type II secretory pathway, component PulD
RA 4 319 G→T V19V (GTG→GTT)  unknown → Type II secretory pathway, component PulD
RA 6 47 +T intergenic (–/–) – / – –/–
RA 6 48 2 bp→GA intergenic (–/–) – / – –/–
RA 6 52 2 bp→AA intergenic (–/–) – / – –/–
RA 6 56 2 bp→TCA intergenic (–/–) – / – –/–
RA 6 64 C→T intergenic (–/–) – / – –/–
RA 6 91 2 bp→CC intergenic (–/–) – / – –/–
RA 6 123 G→T intergenic (–/–) – / – –/–
RA 6 131 4 bp→TACC intergenic (–/–) – / – –/–
RA 6 136 G→A intergenic (–/–) – / – –/–
RA 6 138 T→A intergenic (–/–) – / – –/–
RA 6 270 G→T intergenic (–/–) – / – –/–
RA 6 329 G→A intergenic (–/–) – / – –/–
RA 6 359 T→C intergenic (–/–) – / – –/–
RA 6 370 G→A intergenic (–/–) – / – –/–

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ 1 124206–124305 129499–124358 54–5294 23 [22] [22] 23 unknown–unknown unknown,unknown,unknown
* * ÷ 1 291416 291677 262 24 [22] [18] 23 [unknown]–[unknown] [unknown],[unknown]
* * ÷ 1 395556 396169 614 23 [20] [22] 23 [unknown]–[unknown] [unknown],[unknown]
* * ÷ 1 939359–939468 942646–939523 56–3288 24 [22] [21] 23 [unknown] [unknown]
* * ÷ 1 1373085–1378240 1378434–1378295 56–5350 24 [22] [22] 24 unknown–unknown unknown,unknown,unknown
* * ÷ 1 1456121 1456299 179 25 [22] [22] 24 [unknown] [unknown]
* * ÷ 1 1759100–1764327 1764547–1764382 56–5448 24 [21] [22] 23 unknown–unknown unknown,unknown,unknown
* * ÷ 1 2118691 2119810 1120 23 [21] [22] 23 [unknown]–[unknown] [unknown],[unknown]
* * ÷ 3 1 1619 1619 NA [16] [0] 71 [unknown]–[unknown] [unknown],unknown,[unknown]
* * ÷ 5 1 54 54 NA [0] [0] 71 –/unknown –/Zona occludens toxin‑like phage protein
* * ÷ 5 379 439 61 52 [51] [0] NA unknown Zona occludens toxin‑like phage protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 1 =0 (0.000)32 (0.520) 25/430 0.1 100% intergenic (–/‑464) –/unknown –/Bacterial non‑heme ferritin (EC 1.16.3.2)
?6 = 396 0 (0.000)intergenic (–/–) –/– –/–
* ? 1 = 22211166 (0.860)300 (3.630)
+TTCTCTTTCTCT
113/354 0.0 80.9% intergenic (‑469/+115) unknown/unknown tRNA‑Asp‑GTC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA
?1 222112 = NA (NA)intergenic (‑470/+114) unknown/unknown tRNA‑Asp‑GTC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA
* ? 1 = 21569940 (0.000)84 (1.050) 58/430 0.3 100% intergenic (+58/–) unknown/– Mobile element protein/–
?4 1 = 0 (0.000)coding (1/255 nt) unknown putative phage‑related membrane protein
* ? 3 1 =0 (0.000)16 (0.290) 9/430 0.0 100% coding (1/645 nt) unknown Zona occludens toxin‑like phage protein
?4 = 454 0 (0.000)coding (192/192 nt) unknown Type II secretory pathway, component PulD
* ? 3 1620 =0 (0.000)71 (1.410) 46/424 0.0 100% coding (703/1113 nt) unknown Type II secretory pathway, component PulD
?5 55 = 0 (0.000)intergenic (–/+94) –/unknown –/Zona occludens toxin‑like phage protein
* ? 3 = 20320 (0.000)57 (1.550) 37/430 0.0 100% intergenic (+2/–) unknown/– Type II secretory pathway, component PulD/–
?6 1 = 0 (0.000)intergenic (–/–) –/– –/–