Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,452,396 T→C N211N (AAT→AAC)  unknown → ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,452,3960TC100.0% 230.1 / NA 66N211N (AAT→AAC) unknownATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (44/22);  total (44/22)

TATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTGGTCGATTATATTCCGTTGCATGAACGCCTAGGCACCATCGAAGATACTCCGGAATTATTCTTACGCCAACATAAGAATTATTTCCACTTATTCTATCCAAGTGAAGCAAAAAACGGCGATTTAATCACAGCAGCCTCTTTGCTAAAATCCTGCTTACGGATGAAGCCTGATCGTATTCTGCTTGCGGAATTACGCGGTGGGGAAACTTATGATTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGACGTTGCAAAACGA  >  1/1452156‑1452638
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                   
tATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACt                                                                                                                                                                                                                                           <  1:82622/251‑1 (MQ=255)
       aCGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTc                                                                                                                                                                                                                                      <  1:121596/249‑1 (MQ=255)
        cGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTAt                                                                                                                                                                                                                                   >  1:700861/1‑251 (MQ=255)
                  tttGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAg                                                                                                                                                                                                                         >  1:63083/1‑251 (MQ=255)
                   ttGTCAGATGATGACTGGACACTACTGGAAATTCATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGc                                                                                                                                                                                                                        <  1:620303/251‑1 (MQ=255)
                     gTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCaa                                                                                                                                                                                                                      >  1:834854/1‑251 (MQ=255)
                                        ctactGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATc                                                                                                                                                                                                                                  <  1:598776/220‑1 (MQ=255)
                                        ctactGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATca                                                                                                                                                                                                    >  1:467232/1‑250 (MQ=255)
                                        ctactGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATca                                                                                                                                                                                                    >  1:161532/1‑250 (MQ=255)
                                        ctactGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATca                                                                                                                                                                                                    >  1:310402/1‑250 (MQ=255)
                                            tGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATc                                                                                                                                                                                                                                  >  1:392256/1‑216 (MQ=255)
                                             ggAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAgcg                                                                                                                                                                                                                            <  1:282654/221‑3 (MQ=255)
                                                      tCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATcacggc                                                                                                                                                                                                >  1:437769/1‑237 (MQ=255)
                                                      tCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTg                                                                                                                                                                                      >  1:806088/1‑250 (MQ=255)
                                                          aaGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACACCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCtgaa                                                                                                                                                                                 >  1:437037/1‑248 (MQ=255)
                                                                 aTTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATcttg                                                                                                                                                                           >  1:420622/1‑247 (MQ=255)
                                                                      gCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCAc                                                                                                                                                                                                                                            >  1:479340/1‑180 (MQ=255)
                                                                             tCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGaaa                                                                                                                                                              >  1:637024/1‑250 (MQ=255)
                                                                             tCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGaaa                                                                                                                                                              >  1:830234/1‑250 (MQ=255)
                                                                              ccTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGaaa                                                                                                                                                              >  1:153121/1‑249 (MQ=255)
                                                                              ccTTAAACAAGCGGTCATTTGCGGGAAAAATATTGAGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGaaa                                                                                                                                                              >  1:614619/1‑249 (MQ=255)
                                                                               cTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAATCCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGaaacc                                                                                                                                                            <  1:682227/251‑4 (MQ=255)
                                                                                             cATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTAttttac                                                                                                                                              <  1:714019/251‑5 (MQ=255)
                                                                                             cATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTAttttac                                                                                                                                              <  1:809806/251‑5 (MQ=255)
                                                                                                           atatTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTAcga                                                                                                                                >  1:255552/1‑250 (MQ=255)
                                                                                                                gtgATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTAttttactggcg                                                                                                                                         >  1:166111/1‑228 (MQ=255)
                                                                                                                            gAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGa                                                                                                               >  1:608713/1‑251 (MQ=255)
                                                                                                                                       cGGGAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAAtg                                                                                                    <  1:323651/251‑1 (MQ=255)
                                                                                                                                        gggAAAACCACTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAAc                                                                                                                     >  1:325609/1‑233 (MQ=255)
                                                                                                                                                  cTTTAATGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTttcttc                                                                                          >  1:263081/1‑250 (MQ=255)
                                                                                                                                                      aaTGAAAGCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGc                                                                                     <  1:119083/251‑1 (MQ=255)
                                                                                                                                                             gCCCTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACgg                                                                              >  1:520970/1‑251 (MQ=255)
                                                                                                                                                              cccTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCa                                                                                                                                                                                                                                             <  1:187583/91‑1 (MQ=255)
                                                                                                                                                              cccTAGTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGac                                                                                                              >  1:104685/1‑217 (MQ=255)
                                                                                                                                                                  agTCGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCa                                                                                    >  1:405645/2‑240 (MQ=255)
                                                                                                                                                                     cGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAAc                                                                                                                     >  1:620577/1‑204 (MQ=255)
                                                                                                                                                                     cGATTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGAGGTTTCTTCCGGGCATAACGGGTCGATTa                                                                      >  1:642640/1‑251 (MQ=255)
                                                                                                                                                                       aTTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTc                                                                                                                                                                                                                                      >  1:837387/1‑89 (MQ=255)
                                                                                                                                                                       aTTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTAttttac                                                                                                                                              <  1:205032/177‑5 (MQ=255)
                                                                                                                                                                       aTTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATc                                                                                                        >  1:372620/1‑215 (MQ=255)
                                                                                                                                                                       aTTATATTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAAtgt                                                                                                   <  1:741558/220‑1 (MQ=255)
                                                                                                                                                                          atatTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACg                                                                               >  1:415635/1‑237 (MQ=255)
                                                                                                                                                                            atTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTg                                                               >  1:61451/1‑251 (MQ=255)
                                                                                                                                                                            atTCCGTTGCATGAACGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTg                                                               >  1:356742/1‑251 (MQ=255)
                                                                                                                                                                                           cGCCTGGGGACCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCcggttcggt                                               >  1:297145/1‑251 (MQ=255)
                                                                                                                                                                                             cctggggaCCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGGTTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTg                                             >  1:316054/8‑251 (MQ=255)
                                                                                                                                                                                             cctggggaCCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTAttttac                                                                                                                                              >  1:75971/8‑151 (MQ=255)
                                                                                                                                                                                             cctggggaCCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTg                                             >  1:421188/8‑251 (MQ=255)
                                                                                                                                                                                                  ggaCCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGGATTTTACTTGCGGAATTACGCGGGGGGGGAACTTTTGACTTTTTCCATGTGGGTTCTTTCCGGCATAAAGGGGTGATTACCTCTTTTCATGGCCGG‑TCGGGTGCTgga                                        >  1:72987/3‑249 (MQ=255)
                                                                                                                                                                                                    aCCATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAAc                                      <  1:808223/251‑1 (MQ=255)
                                                                                                                                                                                                     ccATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGttt                                                                                              <  1:302294/195‑1 (MQ=255)
                                                                                                                                                                                                     ccATTGAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTttcttc                                                                                          >  1:672474/1‑199 (MQ=255)
                                                                                                                                                                                                       attgAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCAc                                                                                                                                                                                                                                            <  1:657571/48‑1 (MQ=255)
                                                                                                                                                                                                       attgAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTc                                                                                                                                                                                                                                      <  1:851810/54‑1 (MQ=255)
                                                                                                                                                                                                       attgAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAAc                                                                                <  1:877432/204‑1 (MQ=255)
                                                                                                                                                                                                          gAAGATACCCCGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGa                                >  1:189599/1‑251 (MQ=255)
                                                                                                                                                                                                                 ccccGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAAc                                                                                                                     <  1:729681/158‑1 (MQ=255)
                                                                                                                                                                                                                 ccccGGAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCtt                         >  1:28290/3‑251 (MQ=255)
                                                                                                                                                                                                                      gAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTAtttt                    >  1:830723/1‑251 (MQ=255)
                                                                                                                                                                                                                      gAATTATTCTTACGCCAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTAtttt                    >  1:45976/1‑251 (MQ=255)
                                                                                                                                                                                                                                    ccAACATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGACGTTGCaa       <  1:218333/250‑1 (MQ=255)
                                                                                                                                                                                                                                       aCATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGa               <  1:134641/239‑1 (MQ=255)
                                                                                                                                                                                                                                        cATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTAtttt                    >  1:823741/1‑233 (MQ=255)
                                                                                                                                                                                                                                        cATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGACGTTGCaa       <  1:745124/246‑1 (MQ=255)
                                                                                                                                                                                                                                        cATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGACGTTGCAAAACGa  >  1:705455/1‑251 (MQ=255)
                                                                                                                                                                                                                                        cATAAGAACTATTTCCACTTATTCTATCCAAGCGAAGCAAAAAATGGTGATTTAATCACGGCTGCCTCTTTGCTGAAATCTTGCCTACGAATGAAACCGGATCGTATTTTACTGGCGGAATTACGCGGTGGGGAAACTTATGACTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGACGTTGCAAAACGa  >  1:354/1‑251 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                   
TATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAGGGTGATTATGCGGAATTCCTTAAACAAGCGGTCATTTGCGGGAAAAATATTGTGATTGCCGGGGAAACCGGCTCCGGGAAAACCACTTTAATGAAAGCCCTGGTCGATTATATTCCGTTGCATGAACGCCTAGGCACCATCGAAGATACTCCGGAATTATTCTTACGCCAACATAAGAATTATTTCCACTTATTCTATCCAAGTGAAGCAAAAAACGGCGATTTAATCACAGCAGCCTCTTTGCTAAAATCCTGCTTACGGATGAAGCCTGATCGTATTCTGCTTGCGGAATTACGCGGTGGGGAAACTTATGATTTTATCAATGTGGTTTCTTCCGGGCATAACGGGTCGATTACCTCTTGTCAT‑GCCGGTTCGGTTGCTGAAACCTGGGAACGGCTTATTTTAATGACGTTGCAAAACGA  >  1/1452156‑1452638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑