Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,363,549 T→C L90L (TTA→CTA)  unknown → SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc‑independent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,363,5490TC100.0% 256.0 / NA 73L90L (TTA→CTA) unknownSSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc‑independent
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/42);  total (31/42)

ACTCAAGCTAAGCCGCCGTGAAGGCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATTTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGCAGAACAGAAAGAAAAACCGACATG  >  1/1363305‑1363790
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                 
aCTCAAGCTAAGCCGCCGTGAAGGCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAg                                                                                                                                                                                                                                             <  1:239477/251‑1 (MQ=255)
  tCAAGCTAAGCCGCCGTGAAGGCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAgtg                                                                                                                                                                                                                                           <  1:807344/251‑1 (MQ=255)
   cAAGCTAAGCCGCCGTGAAGGCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAgtgt                                                                                                                                                                                                                                          >  1:464858/1‑251 (MQ=255)
     aGCTAAGCCGCCGTGAAGGCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTg                                                                                                                                                                                                                                        >  1:766746/1‑251 (MQ=255)
                       gCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGat                                                                                                                                                                                                                      >  1:339537/1‑251 (MQ=255)
                            gATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 >  1:495604/1‑251 (MQ=255)
                             atttatttCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 <  1:539194/250‑1 (MQ=255)
                             atttatttCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 <  1:296441/250‑1 (MQ=255)
                             atttatttCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 <  1:676253/250‑1 (MQ=255)
                                 atttCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGttt                                                                                                                                                                                                            <  1:247569/251‑1 (MQ=255)
                                    tCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAgtg                                                                                                                                                                                                                                           >  1:537417/1‑217 (MQ=255)
                                       tAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 <  1:659134/240‑1 (MQ=255)
                                         aaTCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATg                                                                                                                                                                                                    >  1:362659/1‑251 (MQ=255)
                                          aTCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATgg                                                                                                                                                                                                   <  1:207222/251‑1 (MQ=255)
                                               gtgtTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAg                                                                                                                                                                                                               <  1:138761/234‑1 (MQ=255)
                                                              attCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCg                                                                                                                                                                                                        >  1:651390/1‑226 (MQ=255)
                                                                     aTGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCt                                                                                                                                                                         >  1:857748/1‑250 (MQ=255)
                                                                       gTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGCCGATTGGATAATATAGttt                                                                                                                                                                                                            >  1:316266/1‑213 (MQ=255)
                                                                                  atCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAg                                                                                                                                                           <  1:542581/251‑1 (MQ=255)
                                                                                        ccTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGat                                                                                                                                                                                                                      >  1:664631/1‑186 (MQ=255)
                                                                                          tGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAg                                                                                                                                                   <  1:113777/251‑1 (MQ=255)
                                                                                           ggTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCgcgc                                                                                                                                                                                <  1:641139/221‑1 (MQ=255)
                                                                                                 cATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGAttgt                                                                                                                                            >  1:855088/1‑251 (MQ=255)
                                                                                                       gCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTaa                                                                                                                                      >  1:561/1‑251 (MQ=255)
                                                                                                        cTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAAt                                                                                                                                     <  1:601013/251‑1 (MQ=255)
                                                                                                        cTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAAt                                                                                                                                     <  1:384155/251‑1 (MQ=255)
                                                                                                          cGTAAACCGCGTCTGTCTGACTATGGTAGTCAGCTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTACAGGGTAACACAGCTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATgg                                                                                                                                   >  1:525604/1‑251 (MQ=255)
                                                                                                            tAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGt                                                                                                                                  <  1:871880/250‑1 (MQ=255)
                                                                                                                       tgtctgACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGTAGAGGCTCGCCAATTGGTAAGACATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAAc                                                                                                                      <  1:499415/251‑1 (MQ=255)
                                                                                                                        gtctgACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGGAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGGCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACa                                                                                                                     >  1:338077/1‑251 (MQ=255)
                                                                                                                            gACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGt                                                                                                                                  <  1:552706/234‑1 (MQ=255)
                                                                                                                            gACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTc                                                                                                                  >  1:331241/1‑250 (MQ=255)
                                                                                                                              cTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGc                                                                                                                                                                                                                                       <  1:471154/131‑1 (MQ=255)
                                                                                                                                aTGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGttt                                                                                                                                                                                                            >  1:485397/1‑156 (MQ=255)
                                                                                                                                   gTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAgg                                                                                                                                                                                                                                >  1:313432/1‑133 (MQ=255)
                                                                                                                                    tAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGTTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTcc                                                                                                         <  1:123484/251‑1 (MQ=255)
                                                                                                                                    tAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTcc                                                                                                         <  1:513783/251‑1 (MQ=255)
                                                                                                                                     aGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 <  1:513769/146‑1 (MQ=255)
                                                                                                                                              cGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGt                                                                                               <  1:259159/251‑1 (MQ=255)
                                                                                                                                                         aaaaGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAg                                                                                    <  1:65318/251‑1 (MQ=255)
                                                                                                                                                         aaaaGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAg                                                                                    <  1:137682/251‑1 (MQ=255)
                                                                                                                                                                  ccGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGt                                                                                                                                  <  1:325314/196‑1 (MQ=255)
                                                                                                                                                                  ccGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGtt                                                                            <  1:133847/250‑1 (MQ=255)
                                                                                                                                                                    gTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCTCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGCCGTGTGGTAAACATTCCATCTTTCCAGGATTCAGTTGATGTTGTAGTTTCTGTTCGt                                                                         >  1:838019/1‑251 (MQ=255)
                                                                                                                                                                      aTGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATgg                                                                                                                                                                                                   >  1:412192/1‑127 (MQ=255)
                                                                                                                                                                      aTGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGa                                                                       >  1:260083/1‑251 (MQ=255)
                                                                                                                                                                      aTGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGa                                                                       >  1:266747/1‑251 (MQ=255)
                                                                                                                                                                        gTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAg                                                                                                                                                                                                                                             <  1:126875/83‑1 (MQ=255)
                                                                                                                                                                             gTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGAt                                                                                                                                                                                                                           <  1:416221/96‑1 (MQ=255)
                                                                                                                                                                             gTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAAt                                                                  >  1:668802/1‑249 (MQ=255)
                                                                                                                                                                             gTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAAt                                                                  >  1:674040/1‑249 (MQ=255)
                                                                                                                                                                             gTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATC‑TTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTa                                                               >  1:136659/1‑251 (MQ=255)
                                                                                                                                                                               aTTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATgg                                                                                                                                                                                                   <  1:798427/118‑1 (MQ=255)
                                                                                                                                                                                     gAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAgtg                                                                                                                                                                                                                                           >  1:787668/1‑72 (MQ=255)
                                                                                                                                                                                          ccAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGCGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGttt                                                                                                                                                                                                            >  1:447316/1‑98 (MQ=255)
                                                                                                                                                                                             aTTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAatat                                                                                                                                                                                                                 >  1:145994/1‑90 (MQ=255)
                                                                                                                                                                                              ttCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAg                                                                                                                                                   <  1:736330/151‑1 (MQ=255)
                                                                                                                                                                                                ccGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTa                                             <  1:39561/251‑1 (MQ=255)
                                                                                                                                                                                                 cGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTaa                                            <  1:82306/251‑1 (MQ=255)
                                                                                                                                                                                                         ctacAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGt                                                                                                                                                                                                       <  1:747109/88‑1 (MQ=255)
                                                                                                                                                                                                              aagaagCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTTGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGaa                               <  1:278794/251‑1 (MQ=255)
                                                                                                                                                                                                                gaagCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGc                                                                                                                                                                                            <  1:231868/92‑1 (MQ=255)
                                                                                                                                                                                                                gaagCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTg                                                                              <  1:799501/202‑1 (MQ=255)
                                                                                                                                                                                                                gaagCAAACCGCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGt                                                                             <  1:324420/203‑1 (MQ=255)
                                                                                                                                                                                                                          gCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGGTGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGcagaacag                   >  1:605067/1‑251 (MQ=255)
                                                                                                                                                                                                                          gCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGcagaacag                   >  1:302715/1‑251 (MQ=255)
                                                                                                                                                                                                                          gCTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGcagaacag                   >  1:623367/1‑251 (MQ=255)
                                                                                                                                                                                                                           cTTAAAGGGTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTcc                                                                                                         <  1:794198/164‑1 (MQ=255)
                                                                                                                                                                                                                                 gggTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAAc                                                                                                                      <  1:507869/145‑1 (MQ=255)
                                                                                                                                                                                                                                 gggTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAg                                                                                    <  1:676209/179‑1 (MQ=255)
                                                                                                                                                                                                                                 gggTAACACAGGTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGcagaacag                   <  1:833380/244‑1 (MQ=255)
                                                                                                                                                                                                                                           ggTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGt                                                                                                                                  <  1:81207/123‑1 (MQ=255)
                                                                                                                                                                                                                                           ggTGAAAATCTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGCAGAACAGAAAGAAAAACCGACATg  >  1:287583/1‑251 (MQ=255)
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                 
ACTCAAGCTAAGCCGCCGTGAAGGCACTGATTTATTTCTTAAATCAGGTGTTCGTGCGATTGATTCAAAATGTAAAATTGATATCGCGCCTGGTCAACATGGTGCTCGTAAACCGCGTCTGTCTGACTATGGTAGTCAGTTGCGTGAGAAACAAAAAGTTCGCCGTATGTACGGTATTTTGGAACGCCAATTCCGTAATTACTACAAAGAAGCAAACCGCTTAAAGGGTAACACAGGTGAAAATTTATTAGTGTTGCTTGAAGGTCGATTGGATAATATAGTTTATCGTATGGGGTTCGCAGCCACTCGCGCAGAGGCTCGCCAATTGGTAAGTCATAAAGCGATTGTTGTTAATGGTCGTGTGGTAAACATTCCATCTTTCCAGGTTTCAGTTGATGATGTAGTTGCTGTTCGTGAAAAATCTAAGAAACAAGCACGTATTAAAGCATCATTGGAATTGGCAGAACAGAAAGAAAAACCGACATG  >  1/1363305‑1363790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑