| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,447,747 | G→A | intergenic (‑156/‑193) | unknown ← / → unknown | Transcriptional regulator, LysR family/Inner membrane protein forms channel for type IV secretion of T‑DNA complex, VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB4 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,447,747 | 0 | G | A | 100.0% | 289.1 / NA | 86 | intergenic (‑156/‑193) | unknown/unknown | Transcriptional regulator, LysR family/Inner membrane protein forms channel for type IV secretion of T‑DNA complex, VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB4 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (51/35); total (51/35) | |||||||||||
CTTTGGTGAAACTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGGCAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGCCGATTATGTCATTACACAATCTTTTCAGGCTATGC > 1/1447525‑1447988 | cTTTGGTGAAACTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGa < 1:525282/251‑1 (MQ=255)cTTTGGTGAAACTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGa < 1:536780/251‑1 (MQ=255) ttGGTGAAACTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATa < 1:175768/251‑1 (MQ=255) ttGGTGAAACTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATa < 1:744488/251‑1 (MQ=255) aCTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGATTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTa > 1:417501/1‑250 (MQ=255) ccTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTc < 1:609351/250‑1 (MQ=255) cgGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTAt < 1:841101/250‑1 (MQ=255) gTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATAcgcg < 1:183131/228‑1 (MQ=255) gTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCa > 1:400636/1‑250 (MQ=255) gTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCa > 1:314995/1‑250 (MQ=255) tGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGACTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCAc < 1:452394/250‑1 (MQ=255) gATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACtt > 1:283755/1‑251 (MQ=255) gATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGCGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATTAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACtt > 1:578526/1‑251 (MQ=255) ggTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTggg > 1:164840/1‑251 (MQ=255) gTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATAc > 1:466647/1‑249 (MQ=255) tCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGa > 1:43210/1‑250 (MQ=255) tCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGAt > 1:287695/1‑251 (MQ=255) gtCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTgg > 1:146673/1‑251 (MQ=255) aTCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACCAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTaaa > 1:381211/1‑251 (MQ=255) aTCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATAcgcg > 1:250396/1‑195 (MQ=255) aTCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCAcgt > 1:281062/1‑207 (MQ=255) aTCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCAc > 1:335018/1‑218 (MQ=255) aTCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTAc < 1:414093/222‑1 (MQ=255) aTCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGAtt > 1:411908/1‑237 (MQ=255) tCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTAc > 1:646453/1‑239 (MQ=255) tAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTCTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATAc < 1:499955/228‑1 (MQ=255) ggCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATc > 1:638771/1‑210 (MQ=255) gtgtTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCggg > 1:602879/1‑250 (MQ=255) gtgtTCTATTGTTGAATATTATTTACAAGGCTATCCGAGTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCAc < 1:428989/208‑1 (MQ=255) gtTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCaa > 1:519866/1‑251 (MQ=255) gtTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCaa > 1:31618/1‑251 (MQ=255) cTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTc > 1:780006/1‑187 (MQ=255) gttgAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTg > 1:431651/1‑214 (MQ=255) gttgAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACttt > 1:237765/1‑251 (MQ=255) aaTATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAAt < 1:276676/251‑1 (MQ=255) tattatTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATgg < 1:250380/251‑1 (MQ=255) attattTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTCTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGt > 1:825182/1‑251 (MQ=255) attTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTc > 1:174746/1‑172 (MQ=255) tttACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGaaa > 1:871253/1‑251 (MQ=255) ttACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTAcc > 1:840905/1‑168 (MQ=255) ttACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGaa < 1:650957/222‑1 (MQ=255) ttACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAg > 1:506194/1‑251 (MQ=255) ttACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAg > 1:50298/1‑251 (MQ=255) aGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTAcc < 1:277953/163‑1 (MQ=255) aGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTc > 1:115500/1‑165 (MQ=255) aTCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACAt < 1:504346/200‑1 (MQ=255) aTCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTttcttc < 1:471093/251‑1 (MQ=255) ttttCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGc > 1:531760/1‑249 (MQ=255) tttCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTCCTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCtt > 1:452701/1‑251 (MQ=255) tttCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCtt > 1:603993/1‑251 (MQ=255) ctactaATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGaaa < 1:741458/251‑1 (MQ=255) ctactaATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGaaa < 1:603957/251‑1 (MQ=255) ctactaATCAAATGAAACAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTg < 1:356535/179‑1 (MQ=255) aaTCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTaaa > 1:317324/1‑251 (MQ=255) gAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATtata > 1:1095/1‑250 (MQ=255) aaTCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAGGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATAc < 1:884240/250‑1 (MQ=255) aaTCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATAc < 1:286515/250‑1 (MQ=255) aaaGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGTGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGgaag < 1:436317/251‑1 (MQ=255) gTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCg > 1:114498/1‑94 (MQ=255) gTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGaaa > 1:10964/1‑251 (MQ=255) gTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGaaa > 1:288087/1‑251 (MQ=255) gTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGaaa > 1:374202/1‑251 (MQ=255) tttttATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCAc > 1:430413/1‑140 (MQ=255) ataATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCAcgt > 1:513354/1‑124 (MQ=255) ataATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGCAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGa > 1:450632/1‑251 (MQ=255) aaTCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACAt > 1:43797/1‑149 (MQ=255) aaTCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGc > 1:654241/1‑191 (MQ=255) aaTCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGttttttt < 1:147448/251‑1 (MQ=255) cgcgGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGt < 1:198591/251‑1 (MQ=255) cgcgGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGt < 1:254600/251‑1 (MQ=255) gAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGt > 1:124180/1‑247 (MQ=255) gAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTatat > 1:760643/1‑251 (MQ=255) gAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTatat > 1:24384/1‑251 (MQ=255) gAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGAGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTg < 1:339874/124‑1 (MQ=255) aataatCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATc < 1:685760/251‑1 (MQ=255) aataatCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATc < 1:464183/251‑1 (MQ=255) aataatCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATc < 1:205832/251‑1 (MQ=255) ataatCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGa > 1:260961/1‑201 (MQ=255) taatCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCaa < 1:577287/251‑1 (MQ=255) ccTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGc > 1:520712/1‑250 (MQ=255) cGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGaaa < 1:702727/184‑1 (MQ=255) cGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGCCGATTATGTc < 1:324021/251‑1 (MQ=255) gCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATc > 1:687603/1‑235 (MQ=255) ggAGAGAGAGACGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGCCGATTATGTc < 1:382372/243‑1 (MQ=255) agagagagaCGGAAATTGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGCCGATTATGTCATTACACAAt > 1:40764/1‑251 (MQ=255) ttGCGTCAGACAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGCCGATTATGTCATTACACAATCTTTTCAGGCTATGc < 1:589500/251‑1 (MQ=255) | CTTTGGTGAAACTGCCTTCTTGCGCCGCGGTGATAAAGGTGCGAAGTTCGTTGATGTTGTCGATCATAGGCGGTGTTCTATTGTTGAATATTATTTACAAGGCTATCCGATTTTTTCCTACTAATCAAATGAATCAAAGTTTTTTATAATGCACAAATCAAAACGAAACGCGGAATAATCCTCTCGCCCGCTTGAGGGAGAGAGAGACGGAAATTGCGTCAGGCAATTTTCGTCAGAGAGAGGGGGAACGATACGCGTTACCTCCACGTCGTTTTATCACTTACTGGGGAATACTGATTTACATTTTGGTAAAGAAACCGGGCAAATTACTTTTAATGGTGAAAGCCGTTTCTTCCGCTGCCTTGAAATTAAAGATTATACGGAAGAAACCTGTGAAGGTTTTTTTGACGCATTAATGTATATCAATGCCGATTATGTCATTACACAATCTTTTCAGGCTATGC > 1/1447525‑1447988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |