#=GENOME_DIFF	1.0
#=CREATED	10:28:43 07 Feb 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/23R.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk23R
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/23R.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	190215293
#=MAPPED-READS	883277
SNP	1	742	1	4349	G
SNP	2	743	1	5357	T
SNP	3	745	1	7724	A
SNP	4	746	1	9584	C
SNP	5	747	1	18545	G
SNP	6	748	1	18983	C
SNP	7	749	1	23149	G
SNP	8	751	1	36231	C
SNP	9	757	1	39664	G
SNP	10	758	1	41640	T
SNP	11	759	1	43542	A
SNP	12	760	1	44593	A
INS	13	761	1	47452	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	14	762	1	49140	T
SNP	15	763	1	49779	C
SNP	16	764	1	50783	A
SNP	17	766	1	62158	T
SNP	18	767	1	70030	G
SNP	19	768	1	74214	C
SNP	20	769	1	78475	T
SNP	21	770	1	80911	C
SNP	22	773	1	85404	C
SNP	23	774	1	86553	C
DEL	24	775,776	1	89076	2	repeat_length=2	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=TA
SNP	25	778	1	91000	A
SNP	26	779	1	97107	T
SNP	27	780	1	100944	G
SNP	28	781	1	101037	G
SNP	29	783	1	113164	T
SNP	30	784	1	117369	G
SNP	31	785	1	129583	C
SNP	32	786	1	136678	G
SNP	33	787	1	140293	G
SNP	34	788	1	146560	G
SNP	35	789	1	147631	G
SNP	36	791	1	155806	A
SNP	37	792	1	162351	T
SNP	38	793	1	166994	T
SNP	39	795	1	171748	T
SNP	40	798	1	188610	C
SNP	41	799	1	196324	A
SNP	42	800	1	201005	T
SNP	43	801	1	208260	T
SNP	44	802	1	208728	C
SNP	45	803	1	211923	C
SNP	46	805	1	215560	G
SNP	47	806	1	232334	C
SNP	48	809	1	252415	C
SNP	49	812	1	262367	T
SNP	50	813	1	263153	T
SNP	51	814	1	265981	T
SNP	52	817	1	266926	C
SNP	53	818	1	267769	G
SNP	54	819	1	269498	G
SNP	55	820	1	269801	G
SNP	56	821	1	270359	G
SNP	57	823	1	271869	T
SNP	58	824	1	278004	A
SNP	59	825	1	283089	T
SNP	60	826	1	318493	A
DEL	61	827,828	1	318670	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	62	829	1	330906	C
SNP	63	830	1	333842	C
SNP	64	831	1	345741	G
SNP	65	832	1	353069	A
SNP	66	833	1	353900	A
SNP	67	834	1	355190	C
SNP	68	835	1	356321	C
SNP	69	836	1	360551	T
SNP	70	837	1	371895	A
SNP	71	844	1	380716	G
SNP	72	845	1	412697	A
SNP	73	846	1	412883	T
SNP	74	847	1	414712	C
SNP	75	848	1	416262	C
DEL	76	1717,1749	1	421394	64	repeat_length=4	repeat_new_copies=12	repeat_ref_copies=28	repeat_seq=TTTG
SNP	77	849	1	429851	C
SNP	78	850	1	433815	A
SNP	79	851	1	443322	G
SNP	80	853	1	448259	T
SNP	81	854	1	459045	C
SNP	82	855	1	462022	T
SNP	83	856	1	466596	G
SNP	84	857	1	470168	G
SNP	85	858	1	470611	G
SNP	86	859	1	475340	T
SNP	87	866	1	489426	G
SNP	88	867	1	496103	C
SNP	89	868	1	496948	A
DEL	90	870	1	503224	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	91	875	1	512787	A
SNP	92	876	1	520344	A
SNP	93	878	1	531550	G
SNP	94	879	1	533643	T
SNP	95	880	1	534607	T
SNP	96	881	1	540654	G
SNP	97	882	1	541800	A
SNP	98	883	1	546771	T
SNP	99	884	1	551141	A
SNP	100	886	1	557226	G
SNP	101	887	1	563552	A
SNP	102	888	1	566045	G
SNP	103	889	1	569982	T
SNP	104	890	1	572518	C
INS	105	1754	1	584828	AGTCC
INS	106	1755	1	600171	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	107	893	1	601675	C
SNP	108	894	1	602773	C
SNP	109	896	1	604628	G
SNP	110	897	1	606452	A
SNP	111	898	1	607933	A
SNP	112	899	1	613448	A
SNP	113	900	1	614117	G
SNP	114	901	1	618427	G
SNP	115	902	1	621719	T
SNP	116	903	1	622659	A
SNP	117	904	1	627978	G
SNP	118	907	1	644436	T
SNP	119	908	1	646223	C
SNP	120	909	1	647162	G
SNP	121	910	1	652461	C
INS	122	1757	1	665313	ACC
SNP	123	915	1	665938	G
SNP	124	916	1	665983	A
SNP	125	917	1	671321	C
SNP	126	918	1	680844	T
SNP	127	919	1	684996	C
SNP	128	920	1	685238	A
SNP	129	921	1	686293	C
SNP	130	922	1	687774	C
SNP	131	923	1	689388	T
SNP	132	924	1	693785	C
SNP	133	925	1	697217	A
SNP	134	934	1	726543	C
SNP	135	935	1	734088	G
SNP	136	936	1	734524	C
SNP	137	943	1	747320	T
SNP	138	944	1	753488	C
SNP	139	945	1	755436	T
DEL	140	1718,1761	1	755534	21	repeat_length=7	repeat_new_copies=2	repeat_ref_copies=5	repeat_seq=GAAGCCA
SNP	141	946	1	755961	C
SNP	142	947	1	762221	T
INS	143	948	1	763501	T	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=T
SNP	144	949	1	766468	A
SNP	145	950	1	772518	C
SNP	146	951	1	772776	C
SNP	147	952	1	788366	C
SNP	148	953	1	791539	A
SNP	149	954	1	800797	T
SNP	150	955	1	805870	T
DEL	151	956	1	812356	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
SNP	152	957	1	812453	C
SNP	153	960	1	816907	T
SNP	154	961	1	823824	C
SNP	155	962	1	829155	T
SNP	156	966	1	833969	T
SNP	157	967	1	834232	A
SNP	158	970	1	842324	A
SNP	159	971	1	844276	G
SNP	160	972	1	858761	T
SNP	161	973	1	873146	T
SNP	162	974	1	876635	A
SNP	163	975	1	876853	T
INS	164	976	1	893360	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	165	978	1	895348	A
SNP	166	979	1	907216	A
SNP	167	980	1	907237	A
SNP	168	981	1	911719	C
SNP	169	982	1	916162	G
SNP	170	983	1	923696	A
SNP	171	990	1	936678	C
SNP	172	992	1	947508	T
SNP	173	993	1	950081	G
SNP	174	994	1	953736	T
INS	175	1765	1	954509	AAT
SNP	176	995	1	957695	T
SNP	177	998	1	960994	C
SNP	178	1001	1	972705	G
SNP	179	1002	1	974867	T
SNP	180	1003	1	976407	C
SNP	181	1007	1	979749	A
SNP	182	1008	1	989752	C
SNP	183	1009	1	1001876	C
SNP	184	1010	1	1007784	T
SNP	185	1011	1	1012663	G
SNP	186	1012	1	1028067	T
SNP	187	1013	1	1031087	G
SNP	188	1014	1	1031191	G
SNP	189	1015	1	1036210	G
SNP	190	1017	1	1044499	T
SNP	191	1024	1	1065730	G
SNP	192	1027	1	1078174	A
SNP	193	1028	1	1081873	G
SNP	194	1029	1	1083347	C
SNP	195	1030	1	1086711	G
SNP	196	1031	1	1088190	T
SNP	197	1032	1	1092129	C
SNP	198	1039	1	1104936	A
SNP	199	1040	1	1105533	C
SNP	200	1041	1	1112136	T
SNP	201	1042	1	1114680	A
SNP	202	1043	1	1114905	A
SNP	203	1044	1	1116486	G
SNP	204	1046	1	1130121	T
SNP	205	1047	1	1132478	T
SNP	206	1048	1	1136204	T
SNP	207	1050	1	1145447	C
INS	208	1051	1	1148477	G
SNP	209	1053	1	1153783	T
SNP	210	1060	1	1160683	G
SNP	211	1061	1	1164774	G
SNP	212	1062	1	1167270	A
SNP	213	1065	1	1170184	C
SNP	214	1066	1	1171071	T
SNP	215	1067	1	1172982	A
SNP	216	1068	1	1177822	G
SNP	217	1069	1	1182597	C
SNP	218	1071	1	1185010	A
SNP	219	1072	1	1186519	T
SNP	220	1073	1	1187147	G
INS	221	1771	1	1215447	TTATT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=TTATT
SNP	222	1077	1	1220898	T
SNP	223	1081	1	1226270	G
SNP	224	1082	1	1238857	T
SNP	225	1083	1	1241126	C
SNP	226	1084	1	1244031	G
SNP	227	1085	1	1253753	T
SNP	228	1090	1	1256698	C
SNP	229	1092	1	1260495	G
SNP	230	1093	1	1264384	G
SNP	231	1096	1	1277546	G
SNP	232	1097	1	1289948	T
SNP	233	1098	1	1294917	A
SNP	234	1100	1	1307428	C
SNP	235	1101	1	1311241	C
SNP	236	1102	1	1317399	T
SNP	237	1103	1	1318262	T
SNP	238	1104	1	1319604	C
SNP	239	1108	1	1337265	C
SNP	240	1109	1	1338166	C
INS	241	1777	1	1338707	CAAA
SNP	242	1110	1	1342509	C
SNP	243	1111	1	1360686	T
SNP	244	1114	1	1363549	C
SNP	245	1115	1	1365469	G
SUB	246	1116,1117	1	1365911	2	GT
SNP	247	1118	1	1365917	T
SNP	248	1119	1	1365978	A
SNP	249	1120	1	1367978	T
DEL	250	1721,1779	1	1379260	5	repeat_length=5	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=ATATA
SNP	251	1121	1	1380511	C
SNP	252	1122	1	1380664	G
SNP	253	1123	1	1386377	A
SNP	254	1124	1	1392932	G
SNP	255	1125	1	1393451	C
SNP	256	1126	1	1394811	C
SNP	257	1127	1	1397693	A
SNP	258	1128	1	1402387	C
SNP	259	1129	1	1402896	A
SNP	260	1130	1	1408031	C
SNP	261	1132	1	1414482	G
SNP	262	1133	1	1425047	A
SNP	263	1135	1	1432417	C
SNP	264	1136	1	1438551	A
SNP	265	1137	1	1442346	T
SNP	266	1138	1	1444501	C
SNP	267	1139	1	1445545	C
SNP	268	1140	1	1446394	T
SNP	269	1141	1	1447747	A
SNP	270	1142	1	1448590	C
SNP	271	1143	1	1452318	A
SNP	272	1144	1	1452348	G
SNP	273	1145	1	1452351	G
SNP	274	1146	1	1452357	T
SNP	275	1147	1	1452366	C
SNP	276	1148	1	1452396	C
SNP	277	1149	1	1452420	C
SNP	278	1150	1	1452432	T
SNP	279	1151	1	1452435	T
SNP	280	1152	1	1452447	G
SNP	281	1153	1	1452450	T
SNP	282	1154	1	1452462	G
SNP	283	1155	1	1452468	T
SNP	284	1156	1	1452472	C
SNP	285	1157	1	1452477	A
SNP	286	1158	1	1452483	A
SNP	287	1159	1	1452486	G
SNP	288	1160	1	1452496	T
SNP	289	1161	1	1452498	A
SNP	290	1162	1	1452501	G
SNP	291	1163	1	1452531	C
SNP	292	1164	1	1452671	G
SNP	293	1165	1	1452702	T
SNP	294	1166	1	1452705	T
SNP	295	1167	1	1452723	T
SNP	296	1168	1	1452727	C
SNP	297	1169	1	1452738	C
SNP	298	1170	1	1452768	T
SNP	299	1171	1	1452777	T
SNP	300	1172	1	1452780	G
SNP	301	1173	1	1452789	A
SNP	302	1174	1	1452791	G
SUB	303	1175,1176	1	1452796	2	TG
SNP	304	1177	1	1452840	C
SNP	305	1178	1	1453130	C
SNP	306	1179	1	1453142	G
SNP	307	1180	1	1453145	C
SNP	308	1181	1	1453148	T
SNP	309	1182	1	1453160	G
SNP	310	1183	1	1453166	T
SUB	311	1184,1185	1	1453172	2	AC
SNP	312	1186	1	1453178	A
SNP	313	1187	1	1453181	G
SNP	314	1188	1	1453187	A
SNP	315	1189	1	1453190	G
SNP	316	1190	1	1453193	A
SNP	317	1191	1	1453196	T
SNP	318	1192	1	1453200	A
SUB	319	1193,1194	1	1453202	2	CG
SNP	320	1195	1	1453214	T
SNP	321	1196	1	1453217	T
SNP	322	1197	1	1453220	A
SUB	323	1198,1199	1	1453226	2	GC
SNP	324	1200	1	1453229	G
SUB	325	1201,1202	1	1453231	2	CA
SNP	326	1203	1	1453236	G
SNP	327	1204	1	1453244	T
SNP	328	1205	1	1453247	G
SNP	329	1206	1	1453256	G
SUB	330	1207,1208	1	1453259	2	CA
SNP	331	1209	1	1453274	C
SNP	332	1210	1	1453280	T
SNP	333	1211	1	1453283	C
SNP	334	1212	1	1453295	T
SNP	335	1213	1	1453298	A
SNP	336	1214	1	1453310	A
SNP	337	1215	1	1453319	G
SNP	338	1216	1	1453322	A
SNP	339	1217	1	1453337	G
SNP	340	1218	1	1453349	T
SNP	341	1219	1	1453358	G
SUB	342	1220,1221	1	1453367	2	GC
SNP	343	1222	1	1453394	G
SNP	344	1223	1	1453397	G
SNP	345	1224	1	1453427	T
SNP	346	1225	1	1453487	G
SNP	347	1226	1	1453499	A
SNP	348	1227	1	1453544	C
SNP	349	1228	1	1453552	T
SNP	350	1229	1	1453559	C
SNP	351	1230	1	1453562	T
SNP	352	1231	1	1453572	T
SNP	353	1232	1	1453577	C
SNP	354	1233	1	1453583	T
SNP	355	1234	1	1453586	C
SNP	356	1235	1	1453595	T
SNP	357	1236	1	1453601	T
SNP	358	1237	1	1453613	T
SNP	359	1238	1	1453616	G
SNP	360	1239	1	1453637	A
SNP	361	1240	1	1453643	T
SNP	362	1241	1	1453649	C
SNP	363	1242	1	1453679	G
SNP	364	1243	1	1453685	T
SNP	365	1244	1	1453718	T
SNP	366	1245	1	1453739	C
SNP	367	1246	1	1453754	C
SNP	368	1247	1	1453759	T
SNP	369	1248	1	1453797	T
SNP	370	1249	1	1453832	T
SNP	371	1250	1	1453835	A
SUB	372	1251,1252	1	1453839	2	AA
SNP	373	1253	1	1453871	G
SUB	374	1254,1255	1	1453964	2	AA
SNP	375	1256	1	1453991	A
SNP	376	1257	1	1454000	G
SNP	377	1258	1	1454009	C
SNP	378	1259	1	1454015	T
SNP	379	1260	1	1454039	G
SNP	380	1261	1	1454045	G
SNP	381	1262	1	1454051	C
SNP	382	1263	1	1454081	T
SNP	383	1264	1	1454183	A
SNP	384	1265	1	1454192	C
SNP	385	1266	1	1454204	A
SNP	386	1267	1	1454219	A
SNP	387	1268	1	1454255	T
SNP	388	1269	1	1454285	T
SNP	389	1270	1	1454303	A
SNP	390	1271	1	1454306	A
SNP	391	1272	1	1454369	C
SNP	392	1273	1	1454372	A
SNP	393	1274	1	1454375	G
SUB	394	1275,1276	1	1454378	2	TA
SNP	395	1277	1	1454381	A
SNP	396	1278	1	1454390	G
SNP	397	1279	1	1454393	A
SNP	398	1280	1	1454396	G
SNP	399	1281	1	1454399	T
SNP	400	1282	1	1454402	C
SNP	401	1283	1	1454408	T
SNP	402	1284	1	1454420	A
SNP	403	1285	1	1454427	C
SNP	404	1286	1	1454429	C
SNP	405	1287	1	1454438	A
SNP	406	1288	1	1454441	T
SNP	407	1289	1	1454450	G
SNP	408	1290	1	1454453	A
SNP	409	1291	1	1454457	T
SNP	410	1292	1	1454462	T
SNP	411	1293	1	1454465	A
SNP	412	1294	1	1454477	A
SUB	413	1295,1296	1	1454482	2	AA
SNP	414	1297	1	1454487	T
SNP	415	1298	1	1454498	T
SNP	416	1299	1	1454510	C
SNP	417	1300	1	1454516	G
SNP	418	1301	1	1454519	A
SNP	419	1302	1	1454521	T
SNP	420	1303	1	1454528	A
DEL	421	1304,1305,1306,1307,1308,1309,1310,1311,1312,1313,1314,1315	1	1454535	12
SNP	422	1316	1	1454589	A
SNP	423	1317	1	1454605	T
SUB	424	1318,1319	1	1454612	2	AC
SNP	425	1320	1	1454617	T
SNP	426	1321	1	1454621	C
SNP	427	1322	1	1454638	G
SNP	428	1323	1	1454648	A
SNP	429	1324	1	1454651	A
SNP	430	1325	1	1454660	G
SNP	431	1326	1	1454667	G
SNP	432	1327	1	1454670	A
SNP	433	1328	1	1454678	C
SNP	434	1329	1	1454681	A
SNP	435	1330	1	1454683	T
SNP	436	1331	1	1454688	C
SNP	437	1332	1	1454704	T
SNP	438	1333	1	1454927	C
SNP	439	1334	1	1454933	C
SNP	440	1335	1	1454939	C
SNP	441	1336	1	1454943	C
SNP	442	1337	1	1454945	C
SUB	443	1338,1339	1	1454947	2	CA
SNP	444	1340	1	1454955	T
SNP	445	1341	1	1454957	G
SNP	446	1342	1	1454972	T
SNP	447	1343	1	1454978	T
SNP	448	1344	1	1454987	A
SNP	449	1345	1	1454989	G
SNP	450	1346	1	1455021	C
SNP	451	1347	1	1455023	C
SNP	452	1348	1	1455027	G
SNP	453	1349	1	1455030	A
SNP	454	1350	1	1455032	G
SNP	455	1351	1	1455039	C
SUB	456	1352,1353	1	1455057	2	GG
SNP	457	1354	1	1455063	T
SNP	458	1355	1	1455069	T
SNP	459	1356	1	1455072	A
SNP	460	1357	1	1455093	G
SNP	461	1358	1	1455102	T
SNP	462	1359	1	1455231	T
SNP	463	1360	1	1455241	T
SNP	464	1361	1	1455243	G
SNP	465	1362	1	1455246	T
SUB	466	1363,1364	1	1455249	2	AA
SNP	467	1365	1	1455253	T
SUB	468	1366,1367	1	1455257	2	AC
SNP	469	1368	1	1455261	G
SNP	470	1369	1	1455264	C
SUB	471	1370,1371	1	1455267	2	TA
SNP	472	1372	1	1455270	T
SNP	473	1373	1	1455273	T
SNP	474	1374	1	1455276	A
SNP	475	1375	1	1455279	A
SNP	476	1376	1	1455285	G
SUB	477	1377,1378	1	1455287	2	GC
SNP	478	1379	1	1455309	T
SNP	479	1380	1	1455317	G
SNP	480	1381	1	1455324	G
SNP	481	1382	1	1455343	T
SNP	482	1383	1	1455345	T
SUB	483	1384,1385	1	1455347	2	CT
SNP	484	1386	1	1455352	G
SUB	485	1387,1388,1389	1	1455368	3	ATT
SNP	486	1390	1	1455378	A
INS	487	1391	1	1455392	T	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=T
SNP	488	1392	1	1455405	C
SNP	489	1393	1	1455409	C
SNP	490	1394	1	1455428	C
SNP	491	1395	1	1455440	T
SNP	492	1396	1	1455465	T
SNP	493	1397	1	1455500	C
SNP	494	1398	1	1455590	A
SNP	495	1399	1	1455601	T
SNP	496	1400	1	1455606	T
SNP	497	1401	1	1455632	G
SNP	498	1402	1	1455653	C
SNP	499	1403	1	1455656	C
SNP	500	1404	1	1455669	G
SNP	501	1405	1	1455677	C
SNP	502	1406	1	1455691	G
SNP	503	1407	1	1455704	T
SNP	504	1408	1	1455715	C
SNP	505	1409	1	1455730	C
SNP	506	1410	1	1455742	A
SNP	507	1411	1	1455748	A
SNP	508	1412	1	1455771	A
SNP	509	1413	1	1455775	A
SNP	510	1414	1	1455784	C
SUB	511	1415,1416	1	1455787	2	TA
SNP	512	1417	1	1455802	T
SNP	513	1418	1	1455811	C
SNP	514	1419	1	1455814	C
SNP	515	1420	1	1455820	A
SNP	516	1421	1	1455826	G
SNP	517	1422	1	1455832	G
SNP	518	1423	1	1455835	G
SUB	519	1424,1425	1	1455839	2	G
INS	520	1426	1	1455845	T
SUB	521	1427,1428	1	1455847	2	CA
SNP	522	1429	1	1455855	G
SNP	523	1430	1	1455952	G
SNP	524	1431	1	1455955	T
SNP	525	1432	1	1455963	C
SNP	526	1433	1	1455979	C
SNP	527	1434	1	1456019	C
SUB	528	1435,1436	1	1456085	2	TG
SNP	529	1437	1	1456088	C
SNP	530	1438	1	1456097	T
SNP	531	1467	1	1456308	C
SNP	532	1468	1	1456311	T
SNP	533	1469	1	1456320	C
SNP	534	1470	1	1456326	T
SNP	535	1471	1	1456329	T
SNP	536	1472	1	1456332	C
SNP	537	1473	1	1456338	T
SNP	538	1474	1	1456341	C
SNP	539	1475	1	1456344	C
SUB	540	1476,1477	1	1456347	2	CC
SNP	541	1478	1	1456353	A
SNP	542	1479	1	1456356	T
SUB	543	1480,1481	1	1456361	2	GC
SNP	544	1482	1	1456368	T
SNP	545	1483	1	1456371	C
SNP	546	1484	1	1456383	T
SNP	547	1485	1	1456392	A
SNP	548	1486	1	1456410	G
SNP	549	1487	1	1456422	C
SNP	550	1488	1	1456434	C
SNP	551	1489	1	1456467	T
SNP	552	1490	1	1456483	A
SNP	553	1491	1	1456485	G
SNP	554	1492	1	1456487	T
SNP	555	1493	1	1456500	G
SNP	556	1494	1	1456515	T
SNP	557	1495	1	1456524	A
SNP	558	1496	1	1456527	T
SNP	559	1497	1	1456530	C
SNP	560	1498	1	1456533	C
SNP	561	1499	1	1456584	C
SNP	562	1500	1	1456629	G
SNP	563	1501	1	1456632	A
SNP	564	1502	1	1456677	G
SNP	565	1503	1	1456680	T
SNP	566	1504	1	1456698	A
SUB	567	1505,1506	1	1456704	2	AC
SNP	568	1507	1	1456707	A
SNP	569	1508	1	1456710	C
SNP	570	1509	1	1456719	A
SNP	571	1510	1	1456725	T
SUB	572	1511,1512	1	1456732	2	GA
SNP	573	1513	1	1456740	T
SNP	574	1514	1	1456743	A
SNP	575	1515	1	1456746	T
SNP	576	1516	1	1456758	T
SNP	577	1517	1	1456768	G
SNP	578	1518	1	1456770	A
SNP	579	1519	1	1456773	C
SUB	580	1520,1521	1	1456779	2	AA
SNP	581	1522	1	1456785	T
SNP	582	1523	1	1456800	C
SNP	583	1524	1	1456806	A
SNP	584	1525	1	1456812	C
SNP	585	1526	1	1456818	C
SNP	586	1527	1	1456892	T
SNP	587	1528	1	1456927	C
SNP	588	1529	1	1456972	A
INS	589	1530	1	1460978	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	590	1533	1	1471305	A
SNP	591	1535	1	1475136	C
SNP	592	1536	1	1481912	C
SNP	593	1537	1	1491671	C
SNP	594	1539	1	1504237	G
SNP	595	1540	1	1508079	G
DEL	596	1541	1	1509997	1	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=10	repeat_seq=A
SNP	597	1542	1	1517170	G
SNP	598	1543	1	1519586	C
SNP	599	1544	1	1522681	C
DEL	600	1546	1	1539574	1
SNP	601	1547	1	1542820	T
SNP	602	1548	1	1543625	T
SNP	603	1549	1	1546797	T
SNP	604	1550	1	1549549	C
SNP	605	1551	1	1562144	A
SNP	606	1552	1	1562859	T
SNP	607	1553	1	1563338	C
SNP	608	1556	1	1572599	G
SNP	609	1557	1	1572682	G
SNP	610	1558	1	1581320	C
SNP	611	1559	1	1582671	G
SNP	612	1562	1	1588305	G
SNP	613	1563	1	1592325	C
SNP	614	1564	1	1597355	G
SNP	615	1565	1	1609691	T
SNP	616	1566	1	1613290	A
SNP	617	1567	1	1614103	A
SNP	618	1568	1	1620924	A
SNP	619	1569	1	1621060	T
SNP	620	1570	1	1623682	C
SNP	621	1571	1	1635734	C
SNP	622	1573	1	1644865	T
INS	623	1789	1	1646885	GTACTTCGT
SNP	624	1574	1	1651779	T
SNP	625	1575	1	1660004	G
SNP	626	1576	1	1673856	A
SNP	627	1577	1	1676717	A
SNP	628	1578	1	1676780	T
SNP	629	1579	1	1688650	C
SNP	630	1580	1	1692930	C
SNP	631	1582	1	1694421	C
SNP	632	1583	1	1701163	T
SNP	633	1584	1	1703451	C
SNP	634	1585	1	1707063	A
SNP	635	1586	1	1707584	A
SNP	636	1587	1	1714815	A
SNP	637	1588	1	1714984	T
SNP	638	1589	1	1715684	C
SNP	639	1590	1	1716857	C
DEL	640	1723,1791	1	1723309	36
DEL	641	1591	1	1728189	1
SNP	642	1592	1	1732516	A
SNP	643	1593	1	1738050	A
SNP	644	1594	1	1738428	G
SNP	645	1595	1	1745617	C
SNP	646	1596	1	1747914	C
SNP	647	1598	1	1757258	C
SNP	648	1599	1	1775066	G
SNP	649	1600	1	1776164	A
SNP	650	1601	1	1776460	T
SNP	651	1602	1	1791283	C
SNP	652	1604	1	1792162	C
SNP	653	1605	1	1795802	G
SNP	654	1606	1	1799664	G
SNP	655	1607	1	1809178	T
SNP	656	1608	1	1810410	C
SNP	657	1609	1	1810912	T
SNP	658	1610	1	1817609	C
SNP	659	1611	1	1824201	C
SNP	660	1612	1	1828592	A
SNP	661	1613	1	1828959	T
SNP	662	1614	1	1831318	C
SNP	663	1615	1	1832324	T
SNP	664	1618	1	1848112	C
SNP	665	1619	1	1852814	A
SNP	666	1620	1	1867246	T
SNP	667	1621	1	1873656	G
SNP	668	1622	1	1874198	G
SNP	669	1623	1	1876492	C
SNP	670	1624	1	1877073	C
SNP	671	1625	1	1879885	C
SNP	672	1626	1	1885636	A
SNP	673	1627	1	1892300	A
SNP	674	1628	1	1892762	T
SNP	675	1629	1	1894557	T
SNP	676	1633	1	1920292	C
SNP	677	1634	1	1920474	G
SNP	678	1635	1	1930360	A
SNP	679	1636	1	1950170	T
SNP	680	1637	1	1954742	G
SNP	681	1638	1	1957279	G
SNP	682	1639	1	1959453	G
DEL	683	1725,1799	1	1965734	68
SNP	684	1641	1	1967630	A
SNP	685	1642	1	1968516	C
SNP	686	1643	1	1978638	T
SNP	687	1644	1	1979707	C
SNP	688	1645	1	1993820	C
SNP	689	1646	1	2002598	C
SNP	690	1647	1	2002920	C
SNP	691	1648	1	2003214	C
SNP	692	1649	1	2006005	T
DEL	693	1803	1	2013791	15	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=8	repeat_seq=CACCT
SNP	694	1650	1	2016888	C
SNP	695	1651	1	2019248	A
SNP	696	1653	1	2022295	T
SNP	697	1655	1	2032654	C
SNP	698	1656	1	2033676	T
SNP	699	1657	1	2041723	A
SNP	700	1658	1	2044127	G
SNP	701	1659	1	2044130	A
SNP	702	1661	1	2057097	C
SNP	703	1662	1	2064103	C
SNP	704	1663	1	2068186	A
INS	705	1664,1665	1	2071788	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	706	1666	1	2075647	C
SNP	707	1667	1	2078949	C
SNP	708	1668	1	2080918	C
SNP	709	1669	1	2095202	C
SNP	710	1670	1	2098566	G
SNP	711	1673	1	2133001	T
SNP	712	1674	1	2133627	A
SNP	713	1675	1	2138607	C
SNP	714	1676	1	2143665	C
SNP	715	1679	1	2154691	T
DEL	716	1727	2	1	4576
SNP	717	1681	3	1745	C
SNP	718	1682	3	1754	C
SNP	719	1683	3	1970	T
SNP	720	1684	4	207	T
SNP	721	1685	4	213	C
SNP	722	1686	4	234	T
SNP	723	1687	4	237	T
SNP	724	1688	4	289	T
SNP	725	1689	4	295	C
SNP	726	1690	4	316	G
SNP	727	1691	4	319	T
INS	728	1692	6	47	T
SUB	729	1693,1694	6	48	2	GA
SUB	730	1695,1696	6	52	2	AA
SUB	731	1697,1698,1699	6	56	2	TCA
SNP	732	1700	6	64	T
SUB	733	1701,1702	6	91	2	CC
SNP	734	1703	6	123	T
SUB	735	1704,1705,1706,1707	6	131	4	TACC
SNP	736	1708	6	136	A
SNP	737	1709	6	138	A
SNP	738	1710	6	270	T
SNP	739	1711	6	329	A
SNP	740	1712	6	359	C
SNP	741	1713	6	370	A
RA	742	.	1	4349	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	743	.	1	5357	0	C	T	consensus_score=242.9	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	744	.	1	5476	0	T	A	bias_e_value=0.0439507	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.2	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	745	.	1	7724	0	C	A	bias_e_value=1232160	bias_p_value=0.569155	consensus_score=133.3	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	746	.	1	9584	0	T	C	consensus_score=213.1	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	747	.	1	18545	0	C	G	consensus_score=287.3	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	748	.	1	18983	0	T	C	consensus_score=272.6	frequency=1	major_base=C	major_cov=31/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/47
RA	749	.	1	23149	0	A	G	consensus_score=343.0	frequency=1	major_base=G	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	750	.	1	31302	0	G	T	bias_e_value=1186570	bias_p_value=0.548095	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.6	fisher_strand_p_value=0.61927	frequency=5.333e-01	ks_quality_p_value=0.349938	major_base=T	major_cov=3/5	major_frequency=5.333e-01	minor_base=G	minor_cov=4/3	new_cov=3/5	polymorphism_frequency=5.333e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=4/3	total_cov=7/8
RA	751	.	1	36231	0	A	C	consensus_score=305.3	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	752	.	1	38293	0	G	A	bias_e_value=1.30379	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	753	.	1	38336	0	T	A	bias_e_value=98.8544	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.9	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	754	.	1	39523	0	G	T	bias_e_value=0.000304626	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.9	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	755	.	1	39543	0	G	C	bias_e_value=2.51795e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.1	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	756	.	1	39589	0	G	C	bias_e_value=0.607088	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.2	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	757	.	1	39664	0	A	G	bias_e_value=1263410	bias_p_value=0.58359	consensus_score=248.8	fisher_strand_p_value=0.240759	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=37/38	major_frequency=9.615e-01	minor_base=.	minor_cov=3/0	new_cov=37/38	polymorphism_frequency=9.615e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	758	.	1	41640	0	G	T	consensus_score=362.5	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	759	.	1	43542	0	C	A	consensus_score=301.6	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	760	.	1	44593	0	G	A	consensus_score=211.0	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	761	.	1	47444	1	.	C	bias_e_value=2164890	bias_p_value=1	consensus_score=250.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	762	.	1	49140	0	C	T	consensus_score=277.1	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	763	.	1	49779	0	A	C	consensus_score=499.8	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	764	.	1	50783	0	C	A	consensus_score=408.6	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	765	.	1	60490	0	A	C	bias_e_value=6.34577e-05	bias_p_value=2.93122e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.9	fisher_strand_p_value=1.02466e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=45/15	major_frequency=6.667e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.333e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=45/15	total_cov=45/46
RA	766	.	1	62158	0	C	T	consensus_score=249.7	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	767	.	1	70030	0	A	G	bias_e_value=794567	bias_p_value=0.367024	consensus_score=292.9	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	768	.	1	74214	0	A	C	consensus_score=169.0	frequency=1	major_base=C	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	769	.	1	78475	0	C	T	consensus_score=207.5	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	770	.	1	80911	0	T	C	consensus_score=181.2	frequency=1	major_base=C	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	771	.	1	83119	0	G	T	bias_e_value=0.091695	bias_p_value=4.23555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.2	fisher_strand_p_value=2.01474e-09	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=36/8	major_frequency=7.213e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.787e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	772	.	1	83125	0	C	A	bias_e_value=0.0351258	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.9	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	773	.	1	85404	0	A	C	consensus_score=208.9	frequency=1	major_base=C	major_cov=25/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/37
RA	774	.	1	86553	0	T	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	775	.	1	89067	0	A	.	consensus_score=38.8	frequency=1	major_base=.	major_cov=9/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/1
RA	776	.	1	89068	0	T	.	consensus_score=38.8	frequency=1	major_base=.	major_cov=9/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/1
RA	777	.	1	90985	0	G	A	bias_e_value=0.399665	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.8	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	778	.	1	91000	0	G	A	bias_e_value=1775130	bias_p_value=0.819962	consensus_score=197.0	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	779	.	1	97107	0	C	T	consensus_score=321.2	frequency=1	major_base=T	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	780	.	1	100944	0	T	G	consensus_score=268.7	frequency=1	major_base=G	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	781	.	1	101037	0	C	G	consensus_score=261.8	frequency=1	major_base=G	major_cov=38/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/38
RA	782	.	1	103884	0	C	T	bias_e_value=569.383	bias_p_value=0.000263008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.5	fisher_strand_p_value=2.24732e-05	frequency=2.388e-01	ks_quality_p_value=1	major_base=C	major_cov=29/22	major_frequency=7.612e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.388e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=29/22	total_cov=29/38
RA	783	.	1	113164	0	C	T	consensus_score=136.4	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	784	.	1	117369	0	A	G	consensus_score=184.9	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	785	.	1	129583	0	A	C	consensus_score=74.0	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	786	.	1	136678	0	C	G	bias_e_value=2164890	bias_p_value=1	consensus_score=292.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/43	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=44/43	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/43
RA	787	.	1	140293	0	A	G	consensus_score=285.1	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	788	.	1	146560	0	A	G	consensus_score=290.7	frequency=1	major_base=G	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	789	.	1	147631	0	C	G	consensus_score=262.4	frequency=1	major_base=G	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	790	.	1	154092	0	A	T	bias_e_value=821.646	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	791	.	1	155806	0	G	A	consensus_score=187.9	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	792	.	1	162351	0	C	T	consensus_score=21.1	frequency=1	major_base=T	major_cov=3/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	793	.	1	166994	0	C	T	consensus_score=272.1	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	794	.	1	168988	0	C	T	bias_e_value=0.00102574	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	795	.	1	171748	0	C	T	consensus_score=241.9	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	796	.	1	177463	0	A	T	bias_e_value=0.0548851	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.2	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	797	.	1	188080	0	A	C	bias_e_value=0.0484965	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	798	.	1	188610	0	A	C	consensus_score=316.0	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	799	.	1	196324	0	G	A	consensus_score=215.9	frequency=1	major_base=A	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	800	.	1	201005	0	C	T	consensus_score=263.3	frequency=1	major_base=T	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	801	.	1	208260	0	C	T	consensus_score=316.8	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	802	.	1	208728	0	T	C	consensus_score=358.9	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	803	.	1	211923	0	T	C	consensus_score=431.7	frequency=1	major_base=C	major_cov=72/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/52
RA	804	.	1	215273	0	C	T	bias_e_value=0.0149993	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.8	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	805	.	1	215560	0	A	G	consensus_score=360.5	frequency=1	major_base=G	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	806	.	1	232334	0	T	C	consensus_score=278.2	frequency=1	major_base=C	major_cov=37/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/44
RA	807	.	1	245996	0	G	A	bias_e_value=0.00293834	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.9	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	808	.	1	246042	0	C	T	bias_e_value=0.530302	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.7	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	809	.	1	252415	0	T	C	consensus_score=307.1	frequency=1	major_base=C	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	810	.	1	257651	0	A	T	bias_e_value=0.000193071	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.9	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	811	.	1	257675	0	T	G	bias_e_value=0.00103874	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	812	.	1	262367	0	C	T	consensus_score=351.4	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	813	.	1	263153	0	C	T	consensus_score=224.0	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	814	.	1	265981	0	C	T	consensus_score=289.1	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	815	.	1	266824	0	C	T	bias_e_value=11.3241	bias_p_value=5.23079e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.3	fisher_strand_p_value=3.31704e-07	frequency=2.821e-01	ks_quality_p_value=0.989977	major_base=C	major_cov=33/23	major_frequency=7.179e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.821e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=33/23	total_cov=33/46
RA	816	.	1	266854	0	A	C	bias_e_value=2.58659e-05	bias_p_value=1.19479e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.9	fisher_strand_p_value=4.04518e-13	frequency=4.848e-01	ks_quality_p_value=1	major_base=A	major_cov=28/6	major_frequency=5.152e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.848e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=28/6	total_cov=28/38
RA	817	.	1	266926	0	T	C	consensus_score=215.0	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	818	.	1	267769	0	A	G	consensus_score=320.7	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	819	.	1	269498	0	A	G	consensus_score=224.9	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	820	.	1	269801	0	A	G	consensus_score=308.6	frequency=1	major_base=G	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	821	.	1	270359	0	A	G	consensus_score=244.6	frequency=1	major_base=G	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	822	.	1	271500	0	T	A	bias_e_value=0.008299	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.0	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	823	.	1	271869	0	C	T	consensus_score=221.4	frequency=1	major_base=T	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	824	.	1	278004	0	G	A	consensus_score=260.7	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	825	.	1	283089	0	C	T	consensus_score=268.6	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	826	.	1	318493	0	G	A	consensus_score=336.9	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	827	.	1	318665	0	T	.	consensus_score=350.5	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	828	.	1	318666	0	T	.	consensus_score=350.5	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	829	.	1	330906	0	T	C	consensus_score=200.5	frequency=1	major_base=C	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	830	.	1	333842	0	T	C	consensus_score=281.3	frequency=1	major_base=C	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	831	.	1	345741	0	A	G	consensus_score=324.5	frequency=1	major_base=G	major_cov=52/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/43
RA	832	.	1	353069	0	G	A	consensus_score=270.8	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	833	.	1	353900	0	G	A	consensus_score=242.7	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	834	.	1	355190	0	T	C	consensus_score=269.7	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	835	.	1	356321	0	T	C	consensus_score=191.6	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	836	.	1	360551	0	C	T	consensus_score=131.7	frequency=1	major_base=T	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	837	.	1	371895	0	G	A	consensus_score=205.8	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	838	.	1	373824	0	G	A	bias_e_value=2.34653e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.5	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	839	.	1	373833	0	C	T	bias_e_value=4.42884e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.8	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	840	.	1	378893	0	A	C	bias_e_value=14.6949	bias_p_value=6.78784e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.8	fisher_strand_p_value=4.33703e-07	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=25/10	major_frequency=6.731e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.269e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=25/10	total_cov=25/27
RA	841	.	1	380353	0	C	T	bias_e_value=8.15297e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.8	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	842	.	1	380358	0	C	T	bias_e_value=8.15274e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.8	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	843	.	1	380391	0	T	A	bias_e_value=0.015626	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.8	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	844	.	1	380716	0	A	G	consensus_score=280.0	frequency=1	major_base=G	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	845	.	1	412697	0	C	A	consensus_score=237.9	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	846	.	1	412883	0	C	T	consensus_score=285.0	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	847	.	1	414712	0	T	C	consensus_score=211.8	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	848	.	1	416262	0	T	C	consensus_score=284.4	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	849	.	1	429851	0	T	C	consensus_score=377.9	frequency=1	major_base=C	major_cov=38/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/73
RA	850	.	1	433815	0	G	A	consensus_score=347.0	frequency=1	major_base=A	major_cov=59/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/40
RA	851	.	1	443322	0	T	G	consensus_score=404.1	frequency=1	major_base=G	major_cov=63/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/52
RA	852	.	1	445706	0	C	G	bias_e_value=2046570	bias_p_value=0.945347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.6	fisher_strand_p_value=0.688156	frequency=4.483e-01	ks_quality_p_value=1	major_base=C	major_cov=12/4	major_frequency=5.517e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.483e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=12/4	total_cov=21/9
RA	853	.	1	448259	0	C	T	consensus_score=439.1	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	854	.	1	459045	0	T	C	consensus_score=253.8	frequency=1	major_base=C	major_cov=35/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/39
RA	855	.	1	462022	0	C	T	consensus_score=101.9	frequency=1	major_base=T	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	856	.	1	466596	0	A	G	consensus_score=308.9	frequency=1	major_base=G	major_cov=38/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/53
RA	857	.	1	470168	0	A	G	consensus_score=266.4	frequency=1	major_base=G	major_cov=30/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/52
RA	858	.	1	470611	0	A	G	consensus_score=331.9	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	859	.	1	475340	0	C	T	consensus_score=354.6	frequency=1	major_base=T	major_cov=62/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/42
RA	860	.	1	476575	0	C	T	bias_e_value=1058.2	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.8	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	861	.	1	480720	0	T	A	bias_e_value=4.02904	bias_p_value=1.86108e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.7	fisher_strand_p_value=1.09287e-07	frequency=2.063e-01	ks_quality_p_value=1	major_base=T	major_cov=40/10	major_frequency=7.937e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.063e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=40/10	total_cov=40/23
RA	862	.	1	480739	0	G	A	bias_e_value=11.3633	bias_p_value=5.24891e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.8	fisher_strand_p_value=3.29594e-07	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=37/9	major_frequency=7.931e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.069e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=37/9	total_cov=37/21
RA	863	.	1	480748	0	G	C	bias_e_value=3.25448	bias_p_value=1.5033e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.9	fisher_strand_p_value=8.71175e-08	frequency=2.295e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.705e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.295e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=37/10	total_cov=37/24
RA	864	.	1	487550	0	A	T	bias_e_value=2.45101	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	865	.	1	487568	0	A	T	bias_e_value=0.0874127	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.6	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	866	.	1	489426	0	A	G	consensus_score=294.2	frequency=1	major_base=G	major_cov=34/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/54
RA	867	.	1	496103	0	T	C	consensus_score=250.5	frequency=1	major_base=C	major_cov=40/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/35
RA	868	.	1	496948	0	G	A	consensus_score=254.2	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	869	.	1	502529	0	G	A	bias_e_value=2.30058	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.4	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	870	.	1	503216	0	A	.	consensus_score=330.8	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	871	.	1	506687	0	T	A	bias_e_value=4.63634e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.3	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	872	.	1	506716	0	T	A	bias_e_value=0.0547527	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.1	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	873	.	1	506758	0	T	A	bias_e_value=1.5995e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.3	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	874	.	1	507447	0	T	G	bias_e_value=1.26586e-07	bias_p_value=5.84721e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.6	fisher_strand_p_value=1.66938e-15	frequency=2.788e-01	ks_quality_p_value=1	major_base=T	major_cov=14/61	major_frequency=7.212e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.788e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=14/61	total_cov=43/61
RA	875	.	1	512787	0	G	A	consensus_score=283.4	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	876	.	1	520344	0	G	A	consensus_score=231.3	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	877	.	1	525132	0	T	A	bias_e_value=186.36	bias_p_value=8.60829e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.8	fisher_strand_p_value=6.66333e-06	frequency=3.667e-01	ks_quality_p_value=1	major_base=T	major_cov=16/3	major_frequency=6.333e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=3.667e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=16/3	total_cov=16/14
RA	878	.	1	531550	0	T	G	consensus_score=140.7	frequency=1	major_base=G	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	879	.	1	533643	0	C	T	consensus_score=294.3	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	880	.	1	534607	0	C	T	consensus_score=108.3	frequency=1	major_base=T	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	881	.	1	540654	0	A	G	consensus_score=320.1	frequency=1	major_base=G	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	882	.	1	541800	0	G	A	consensus_score=275.4	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	883	.	1	546771	0	C	T	consensus_score=253.1	frequency=1	major_base=T	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	884	.	1	551141	0	G	A	consensus_score=18.1	frequency=1	major_base=A	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	885	.	1	554040	0	T	G	bias_e_value=1.26945e-06	bias_p_value=5.86381e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.5	fisher_strand_p_value=1.79592e-14	frequency=3.483e-01	ks_quality_p_value=1	major_base=T	major_cov=12/46	major_frequency=6.517e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=12/46	total_cov=43/46
RA	886	.	1	557226	0	A	G	consensus_score=229.3	frequency=1	major_base=G	major_cov=25/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/43
RA	887	.	1	563552	0	G	A	consensus_score=172.2	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	888	.	1	566045	0	A	G	consensus_score=223.8	frequency=1	major_base=G	major_cov=28/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/38
RA	889	.	1	569982	0	C	T	consensus_score=187.4	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	890	.	1	572518	0	T	C	consensus_score=226.0	frequency=1	major_base=C	major_cov=23/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/43
RA	891	.	1	595819	0	C	A	bias_e_value=0.000205375	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.0	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	892	.	1	600770	0	C	G	bias_e_value=0.000287592	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.1	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	893	.	1	601675	0	A	C	consensus_score=302.2	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	894	.	1	602773	0	T	C	consensus_score=254.3	frequency=1	major_base=C	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	895	.	1	604415	0	T	A	bias_e_value=1.38881	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.5	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	896	.	1	604628	0	A	G	consensus_score=255.2	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	897	.	1	606452	0	G	A	consensus_score=139.8	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	898	.	1	607933	0	G	A	bias_e_value=2027010	bias_p_value=0.93631	consensus_score=262.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.665028	major_base=A	major_cov=39/38	major_frequency=9.872e-01	minor_base=T	minor_cov=1/0	new_cov=39/38	polymorphism_frequency=9.872e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	899	.	1	613448	0	G	A	consensus_score=295.3	frequency=1	major_base=A	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	900	.	1	614117	0	A	G	consensus_score=307.2	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	901	.	1	618427	0	A	G	consensus_score=308.1	frequency=1	major_base=G	major_cov=51/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/36
RA	902	.	1	621719	0	C	T	consensus_score=181.3	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	903	.	1	622659	0	C	A	consensus_score=229.4	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	904	.	1	627978	0	T	G	consensus_score=271.7	frequency=1	major_base=G	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	905	.	1	641368	0	C	A	bias_e_value=0.306288	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.6	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.439e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=42/19	total_cov=42/40
RA	906	.	1	641384	0	C	A	bias_e_value=0.0568469	bias_p_value=2.62585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.5	fisher_strand_p_value=1.21994e-09	frequency=3.768e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.232e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.768e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=30/13	total_cov=30/39
RA	907	.	1	644436	0	C	T	consensus_score=272.2	frequency=1	major_base=T	major_cov=32/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/46
RA	908	.	1	646223	0	T	C	consensus_score=303.7	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	909	.	1	647162	0	A	G	consensus_score=43.2	frequency=1	major_base=G	major_cov=8/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/6
RA	910	.	1	652461	0	T	C	consensus_score=299.1	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	911	.	1	659834	0	T	A	bias_e_value=33.0669	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.4	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	912	.	1	662539	0	G	A	bias_e_value=0.000114913	bias_p_value=5.30801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.2	fisher_strand_p_value=1.89632e-12	frequency=2.547e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.453e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.547e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=58/21	total_cov=58/48
RA	913	.	1	662544	0	A	C	bias_e_value=3.4375e-07	bias_p_value=1.58784e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.2	fisher_strand_p_value=4.67045e-15	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.635e-01	minor_base=C	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.365e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=55/14	total_cov=56/48
RA	914	.	1	662564	0	A	C	bias_e_value=9.69171e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.2	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.263e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.737e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=54/8	total_cov=54/45
RA	915	.	1	665938	0	A	G	consensus_score=250.9	frequency=1	major_base=G	major_cov=32/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/40
RA	916	.	1	665983	0	G	A	consensus_score=277.0	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	917	.	1	671321	0	T	C	consensus_score=260.8	frequency=1	major_base=C	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	918	.	1	680844	0	C	T	consensus_score=161.2	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	919	.	1	684996	0	A	C	bias_e_value=1682390	bias_p_value=0.777125	consensus_score=343.4	fisher_strand_p_value=0.411765	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/60	major_frequency=9.902e-01	minor_base=G	minor_cov=1/0	new_cov=41/60	polymorphism_frequency=9.902e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=42/60
RA	920	.	1	685238	0	T	A	consensus_score=292.4	frequency=1	major_base=A	major_cov=30/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/55
RA	921	.	1	686293	0	T	C	consensus_score=356.5	frequency=1	major_base=C	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	922	.	1	687774	0	T	C	consensus_score=243.4	frequency=1	major_base=C	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	923	.	1	689388	0	C	T	bias_e_value=2164890	bias_p_value=1	consensus_score=290.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	924	.	1	693785	0	G	C	consensus_score=376.1	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	925	.	1	697217	0	G	A	consensus_score=257.4	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	926	.	1	699602	0	T	G	bias_e_value=1.57535e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.4	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	927	.	1	724638	0	T	G	bias_e_value=4.22198e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.2	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	928	.	1	724862	0	A	C	bias_e_value=28.73	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	929	.	1	724891	0	T	C	bias_e_value=0.00573145	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.4	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	930	.	1	724897	0	A	C	bias_e_value=0.0674998	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.9	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	931	.	1	724901	0	G	T	bias_e_value=1.84407	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	932	.	1	724911	0	C	A	bias_e_value=0.0159186	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.7	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	933	.	1	724933	0	G	C	bias_e_value=0.102375	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.3	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	934	.	1	726543	0	T	C	consensus_score=347.6	frequency=1	major_base=C	major_cov=47/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/55
RA	935	.	1	734088	0	A	G	consensus_score=399.2	frequency=1	major_base=G	major_cov=59/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/58
RA	936	.	1	734524	0	T	C	consensus_score=272.7	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	937	.	1	735059	0	C	A	bias_e_value=8.69697e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.0	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	938	.	1	735070	0	T	C	bias_e_value=4.30218e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.2	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	939	.	1	735100	0	G	A	bias_e_value=1.24404e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.3	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	940	.	1	735111	0	G	T	bias_e_value=3.50542e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.3	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	941	.	1	735121	0	G	A	bias_e_value=1.08816e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.5	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	942	.	1	735124	0	A	C	bias_e_value=3.88156e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.9	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	943	.	1	747320	0	G	T	consensus_score=403.2	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	944	.	1	753488	0	T	C	consensus_score=373.1	frequency=1	major_base=C	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	945	.	1	755436	0	C	T	consensus_score=158.4	frequency=1	major_base=T	major_cov=24/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/23
RA	946	.	1	755961	0	T	C	consensus_score=379.8	frequency=1	major_base=C	major_cov=67/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/43
RA	947	.	1	762221	0	C	T	consensus_score=338.5	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	948	.	1	763493	1	.	T	bias_e_value=1631240	bias_p_value=0.753497	consensus_score=414.0	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.998719	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	949	.	1	766468	0	G	A	consensus_score=190.6	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	950	.	1	772518	0	T	C	consensus_score=401.7	frequency=1	major_base=C	major_cov=66/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/49
RA	951	.	1	772776	0	T	C	consensus_score=347.8	frequency=1	major_base=C	major_cov=45/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/61
RA	952	.	1	788366	0	T	C	consensus_score=347.9	frequency=1	major_base=C	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	953	.	1	791539	0	G	A	consensus_score=160.1	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	954	.	1	800797	0	C	T	consensus_score=422.1	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	955	.	1	805870	0	C	T	consensus_score=445.7	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	956	.	1	812350	0	G	.	consensus_score=465.3	frequency=1	major_base=.	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	957	.	1	812453	0	T	C	consensus_score=366.2	frequency=1	major_base=C	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	958	.	1	816010	0	T	G	bias_e_value=0.000838673	bias_p_value=3.87397e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.2	fisher_strand_p_value=1.50241e-11	frequency=2.083e-01	ks_quality_p_value=0.994533	major_base=T	major_cov=15/61	major_frequency=7.917e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.083e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/61	total_cov=35/61
RA	959	.	1	816044	0	G	A	bias_e_value=0.00101272	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.9	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	960	.	1	816907	0	C	T	consensus_score=159.3	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	961	.	1	823824	0	T	C	consensus_score=430.7	frequency=1	major_base=C	major_cov=67/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/59
RA	962	.	1	829155	0	G	T	consensus_score=353.8	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	963	.	1	833421	0	G	A	bias_e_value=2.11212e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.9	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	964	.	1	833495	0	G	T	bias_e_value=3.68842e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.8	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	965	.	1	833533	0	G	A	bias_e_value=0.895283	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.9	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	966	.	1	833969	0	C	T	consensus_score=304.7	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	967	.	1	834232	0	G	A	consensus_score=387.1	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	968	.	1	839034	0	T	A	bias_e_value=0.493602	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.4	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	969	.	1	839054	0	G	A	bias_e_value=0.495653	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.2	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	970	.	1	842324	0	G	A	consensus_score=462.0	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	971	.	1	844276	0	A	G	consensus_score=459.7	frequency=1	major_base=G	major_cov=70/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/67
RA	972	.	1	858761	0	C	T	consensus_score=355.5	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	973	.	1	873146	0	G	T	consensus_score=479.7	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	974	.	1	876635	0	G	A	consensus_score=327.8	frequency=1	major_base=A	major_cov=41/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/56
RA	975	.	1	876853	0	C	T	consensus_score=415.9	frequency=1	major_base=T	major_cov=61/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/57
RA	976	.	1	893354	1	.	A	bias_e_value=1413.53	bias_p_value=0.000652931	consensus_score=272.3	fisher_strand_p_value=6.09947e-05	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/54	major_frequency=8.953e-01	minor_base=.	minor_cov=9/0	new_cov=23/54	polymorphism_frequency=8.953e-01	polymorphism_score=17.5	prediction=consensus	ref_cov=9/0	total_cov=32/54
RA	977	.	1	894127	0	G	T	bias_e_value=1.02767e-05	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.3	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	978	.	1	895348	0	G	A	consensus_score=398.7	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	979	.	1	907216	0	G	A	consensus_score=374.2	frequency=1	major_base=A	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
RA	980	.	1	907237	0	G	A	consensus_score=426.4	frequency=1	major_base=A	major_cov=69/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/76
RA	981	.	1	911719	0	T	C	consensus_score=431.8	frequency=1	major_base=C	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	982	.	1	916162	0	A	G	bias_e_value=1501120	bias_p_value=0.693394	consensus_score=354.3	fisher_strand_p_value=0.477064	frequency=1	ks_quality_p_value=0.687085	major_base=G	major_cov=57/51	major_frequency=9.908e-01	minor_base=.	minor_cov=0/1	new_cov=57/51	polymorphism_frequency=9.908e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	983	.	1	923696	0	C	A	consensus_score=378.2	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	984	.	1	924031	0	A	C	bias_e_value=4.06279e-05	bias_p_value=1.87667e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.8	fisher_strand_p_value=6.456e-13	frequency=2.809e-01	ks_quality_p_value=1	major_base=A	major_cov=13/51	major_frequency=7.191e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=13/51	total_cov=38/52
RA	985	.	1	924049	0	T	A	bias_e_value=0.000323382	bias_p_value=1.49376e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.2	fisher_strand_p_value=5.54942e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=13/47	major_frequency=7.143e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.857e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=13/47	total_cov=37/53
RA	986	.	1	924057	0	G	A	bias_e_value=3.09795	bias_p_value=1.431e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.5	fisher_strand_p_value=8.26768e-08	frequency=2.135e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.865e-01	minor_base=A	minor_cov=18/1	new_cov=18/1	polymorphism_frequency=2.135e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=19/51	total_cov=38/52
RA	987	.	1	924094	0	A	C	bias_e_value=1.6752	bias_p_value=7.73803e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.1	fisher_strand_p_value=4.30845e-08	frequency=2.644e-01	ks_quality_p_value=1	major_base=A	major_cov=44/20	major_frequency=7.356e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.644e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=44/20	total_cov=45/42
RA	988	.	1	924168	0	A	C	bias_e_value=2.80619e-07	bias_p_value=1.29623e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.4	fisher_strand_p_value=3.78941e-15	frequency=3.370e-01	ks_quality_p_value=1	major_base=A	major_cov=52/9	major_frequency=6.630e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.370e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=52/9	total_cov=54/39
RA	989	.	1	924961	0	T	A	bias_e_value=0.0932697	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.4	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	990	.	1	936678	0	T	C	consensus_score=370.1	frequency=1	major_base=C	major_cov=57/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/48
RA	991	.	1	938461	0	A	G	bias_e_value=0.182362	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.1	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	992	.	1	947508	0	C	T	consensus_score=352.1	frequency=1	major_base=T	major_cov=64/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/40
RA	993	.	1	950081	0	A	G	consensus_score=343.3	frequency=1	major_base=G	major_cov=59/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/42
RA	994	.	1	953736	0	C	T	consensus_score=371.5	frequency=1	major_base=T	major_cov=50/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	995	.	1	957695	0	C	T	consensus_score=283.2	frequency=1	major_base=T	major_cov=28/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/55
RA	996	.	1	960872	0	C	A	bias_e_value=2.02535e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.0	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=C	major_cov=25/66	major_frequency=7.398e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.602e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=25/66	total_cov=57/66
RA	997	.	1	960896	0	T	A	bias_e_value=0.000593221	bias_p_value=2.74019e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.6	fisher_strand_p_value=1.04242e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=27/65	major_frequency=7.797e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.203e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=27/65	total_cov=53/65
RA	998	.	1	960994	0	A	C	bias_e_value=1644200	bias_p_value=0.759485	consensus_score=249.7	fisher_strand_p_value=0.392405	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/48	major_frequency=9.873e-01	minor_base=A	minor_cov=1/0	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=31/48
RA	999	.	1	961179	0	A	G	bias_e_value=1.79444	bias_p_value=8.28881e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.2	fisher_strand_p_value=4.63391e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.541e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.459e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=10/36	total_cov=26/36
RA	1000	.	1	961194	0	C	G	bias_e_value=0.0828178	bias_p_value=3.82549e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.9	fisher_strand_p_value=1.81048e-09	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=9/36	major_frequency=7.143e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.857e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=9/36	total_cov=27/36
RA	1001	.	1	972705	0	A	G	consensus_score=284.8	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	1002	.	1	974867	0	C	T	consensus_score=342.3	frequency=1	major_base=T	major_cov=48/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/53
RA	1003	.	1	976407	0	T	C	consensus_score=263.9	frequency=1	major_base=C	major_cov=48/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/29
RA	1004	.	1	977346	0	T	A	bias_e_value=6.87013e-05	bias_p_value=3.17343e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.5	fisher_strand_p_value=1.11253e-12	frequency=2.603e-01	ks_quality_p_value=1	major_base=T	major_cov=48/6	major_frequency=7.397e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=48/6	total_cov=48/25
RA	1005	.	1	977362	0	T	C	bias_e_value=1.55072e-07	bias_p_value=7.16303e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.5	fisher_strand_p_value=2.05731e-15	frequency=2.895e-01	ks_quality_p_value=1	major_base=T	major_cov=50/4	major_frequency=7.105e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.895e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=50/4	total_cov=50/29
RA	1006	.	1	977392	0	A	T	bias_e_value=1.91429e-05	bias_p_value=8.84243e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.2	fisher_strand_p_value=2.96253e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=49/7	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=49/7	total_cov=49/28
RA	1007	.	1	979749	0	G	A	consensus_score=318.9	frequency=1	major_base=A	major_cov=44/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/48
RA	1008	.	1	989752	0	T	C	consensus_score=398.1	frequency=1	major_base=C	major_cov=42/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/70
RA	1009	.	1	1001876	0	T	C	consensus_score=389.7	frequency=1	major_base=C	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	1010	.	1	1007784	0	C	T	consensus_score=466.1	frequency=1	major_base=T	major_cov=63/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/68
RA	1011	.	1	1012663	0	A	G	consensus_score=215.9	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	1012	.	1	1028067	0	G	T	consensus_score=424.0	frequency=1	major_base=T	major_cov=51/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/69
RA	1013	.	1	1031087	0	A	G	consensus_score=303.5	frequency=1	major_base=G	major_cov=48/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/42
RA	1014	.	1	1031191	0	A	G	consensus_score=290.3	frequency=1	major_base=G	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	1015	.	1	1036210	0	A	G	consensus_score=306.5	frequency=1	major_base=G	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	1016	.	1	1037589	0	T	C	bias_e_value=1.04457e-10	bias_p_value=4.82505e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.9	fisher_strand_p_value=1.14026e-18	frequency=2.816e-01	ks_quality_p_value=1	major_base=T	major_cov=8/66	major_frequency=7.184e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=8/66	total_cov=37/66
RA	1017	.	1	1044499	0	C	T	consensus_score=309.0	frequency=1	major_base=T	major_cov=40/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/50
RA	1018	.	1	1054743	0	A	C	bias_e_value=5.83729e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.3	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=A	major_cov=57/26	major_frequency=6.748e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.252e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=57/26	total_cov=57/66
RA	1019	.	1	1054806	0	A	C	bias_e_value=6.27331e-06	bias_p_value=2.89775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.9	fisher_strand_p_value=9.34725e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=7.317e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.683e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=63/27	total_cov=63/60
RA	1020	.	1	1060649	0	C	A	bias_e_value=0.0758527	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.9	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.826e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=20/52	total_cov=40/52
RA	1021	.	1	1060674	0	T	A	bias_e_value=0.000751054	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.5	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=T	major_cov=15/54	major_frequency=7.582e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/54	total_cov=37/54
RA	1022	.	1	1060685	0	G	A	bias_e_value=6.00403e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=G	major_cov=4/54	major_frequency=6.517e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	1023	.	1	1060707	0	T	A	bias_e_value=8.43024e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.0	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=15/59	major_frequency=7.629e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=15/59	total_cov=38/59
RA	1024	.	1	1065730	0	A	G	consensus_score=350.9	frequency=1	major_base=G	major_cov=53/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/50
RA	1025	.	1	1068388	0	G	A	bias_e_value=0.0121922	bias_p_value=5.6318e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=2.43419e-10	frequency=2.198e-01	ks_quality_p_value=1	major_base=G	major_cov=54/17	major_frequency=7.802e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.198e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=54/17	total_cov=54/37
RA	1026	.	1	1068439	0	T	C	bias_e_value=1.37721e-08	bias_p_value=6.36156e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.3	fisher_strand_p_value=1.70516e-16	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=56/6	major_frequency=7.126e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.874e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=56/6	total_cov=56/31
RA	1027	.	1	1078174	0	C	A	consensus_score=409.1	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	1028	.	1	1081873	0	A	G	consensus_score=495.0	frequency=1	major_base=G	major_cov=77/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/67
RA	1029	.	1	1083347	0	A	C	consensus_score=392.1	frequency=1	major_base=C	major_cov=66/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/52
RA	1030	.	1	1086711	0	A	G	consensus_score=523.4	frequency=1	major_base=G	major_cov=78/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/78
RA	1031	.	1	1088190	0	G	T	consensus_score=429.3	frequency=1	major_base=T	major_cov=63/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/63
RA	1032	.	1	1092129	0	T	C	consensus_score=290.0	frequency=1	major_base=C	major_cov=47/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/38
RA	1033	.	1	1101775	0	C	T	bias_e_value=0.284263	bias_p_value=1.31306e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.3	fisher_strand_p_value=6.62054e-09	frequency=2.162e-01	ks_quality_p_value=1	major_base=C	major_cov=33/54	major_frequency=7.838e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.162e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=33/54	total_cov=57/54
RA	1034	.	1	1101782	0	C	T	bias_e_value=0.497447	bias_p_value=2.29779e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.2	fisher_strand_p_value=1.19407e-08	frequency=2.130e-01	ks_quality_p_value=1	major_base=C	major_cov=31/54	major_frequency=7.870e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.130e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=31/54	total_cov=56/54
RA	1035	.	1	1101791	0	A	T	bias_e_value=1.08905e-09	bias_p_value=5.03051e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.1	fisher_strand_p_value=1.26038e-17	frequency=3.455e-01	ks_quality_p_value=1	major_base=A	major_cov=15/57	major_frequency=6.545e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=15/57	total_cov=53/57
RA	1036	.	1	1101803	0	T	G	bias_e_value=2.7066e-10	bias_p_value=1.25022e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.5	fisher_strand_p_value=3.02425e-18	frequency=3.303e-01	ks_quality_p_value=1	major_base=T	major_cov=13/60	major_frequency=6.697e-01	minor_base=G	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.303e-01	polymorphism_score=28.6	prediction=polymorphism	ref_cov=13/60	total_cov=49/60
RA	1037	.	1	1101805	0	A	G	bias_e_value=0.0102814	bias_p_value=4.74915e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.9	fisher_strand_p_value=2.03701e-10	frequency=2.056e-01	ks_quality_p_value=1	major_base=A	major_cov=24/61	major_frequency=7.944e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.056e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=24/61	total_cov=50/61
RA	1038	.	1	1101820	0	C	T	bias_e_value=1.08441e-09	bias_p_value=5.00908e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.4	fisher_strand_p_value=1.25488e-17	frequency=2.975e-01	ks_quality_p_value=1	major_base=C	major_cov=18/67	major_frequency=7.025e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.975e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=18/67	total_cov=54/67
RA	1039	.	1	1104936	0	G	A	consensus_score=386.3	frequency=1	major_base=A	major_cov=53/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/62
RA	1040	.	1	1105533	0	T	C	consensus_score=429.9	frequency=1	major_base=C	major_cov=66/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/61
RA	1041	.	1	1112136	0	C	T	consensus_score=400.7	frequency=1	major_base=T	major_cov=37/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/77
RA	1042	.	1	1114680	0	G	A	consensus_score=389.6	frequency=1	major_base=A	major_cov=51/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/62
RA	1043	.	1	1114905	0	G	A	consensus_score=318.7	frequency=1	major_base=A	major_cov=60/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/34
RA	1044	.	1	1116486	0	A	G	consensus_score=452.7	frequency=1	major_base=G	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	1045	.	1	1123501	0	A	T	bias_e_value=0.0444056	bias_p_value=2.05117e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.6	fisher_strand_p_value=9.41619e-10	frequency=2.317e-01	ks_quality_p_value=1	major_base=A	major_cov=15/48	major_frequency=7.683e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.317e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=15/48	total_cov=34/48
RA	1046	.	1	1130121	0	C	T	consensus_score=287.2	frequency=1	major_base=T	major_cov=46/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/39
RA	1047	.	1	1132478	0	C	T	consensus_score=299.7	frequency=1	major_base=T	major_cov=46/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/47
RA	1048	.	1	1136204	0	C	T	consensus_score=235.3	frequency=1	major_base=T	major_cov=27/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/43
RA	1049	.	1	1144812	0	T	C	bias_e_value=6.92827e-08	bias_p_value=3.20029e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.5	fisher_strand_p_value=8.97781e-16	frequency=2.796e-01	ks_quality_p_value=1	major_base=T	major_cov=58/9	major_frequency=7.204e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.796e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=58/9	total_cov=58/36
RA	1050	.	1	1145447	0	T	C	consensus_score=357.0	frequency=1	major_base=C	major_cov=47/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/56
RA	1051	.	1	1148473	1	.	G	consensus_score=395.2	frequency=1	major_base=G	major_cov=72/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/47
RA	1052	.	1	1153747	0	G	T	bias_e_value=7.2162e-09	bias_p_value=3.33329e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.1	fisher_strand_p_value=8.77835e-17	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=6/58	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/58	total_cov=31/58
RA	1053	.	1	1153783	0	C	T	bias_e_value=969962	bias_p_value=0.448042	consensus_score=288.8	fisher_strand_p_value=0.159102	frequency=1	ks_quality_p_value=0.987995	major_base=T	major_cov=35/55	major_frequency=9.783e-01	minor_base=C	minor_cov=2/0	new_cov=35/55	polymorphism_frequency=9.783e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=2/0	total_cov=37/55
RA	1054	.	1	1155682	0	A	G	bias_e_value=0.00997084	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.8	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=A	major_cov=39/60	major_frequency=7.674e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=39/60	total_cov=71/60
RA	1055	.	1	1156279	0	A	C	bias_e_value=6.0967e-08	bias_p_value=2.81617e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.4	fisher_strand_p_value=7.8712e-16	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=63/27	major_frequency=6.923e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.077e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=63/27	total_cov=63/68
RA	1056	.	1	1156861	0	G	T	bias_e_value=6.37076e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.5	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=G	major_cov=12/56	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=12/56	total_cov=34/56
RA	1057	.	1	1156875	0	C	A	bias_e_value=0.712764	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.3	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/49	major_frequency=7.931e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.069e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=20/49	total_cov=39/49
RA	1058	.	1	1159529	0	A	G	bias_e_value=0.0473686	bias_p_value=2.18804e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.3	fisher_strand_p_value=1.00758e-09	frequency=2.192e-01	ks_quality_p_value=1	major_base=A	major_cov=10/47	major_frequency=7.808e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=10/47	total_cov=27/47
RA	1059	.	1	1159585	0	C	T	bias_e_value=0.131229	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.5	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.671e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.329e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=12/44	total_cov=29/44
RA	1060	.	1	1160683	0	A	G	bias_e_value=2164830	bias_p_value=0.999972	consensus_score=258.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=G	major_cov=61/20	major_frequency=9.878e-01	minor_base=A	minor_cov=1/0	new_cov=61/20	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/20
RA	1061	.	1	1164774	0	A	G	consensus_score=356.3	frequency=1	major_base=G	major_cov=46/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/59
RA	1062	.	1	1167270	0	G	A	consensus_score=268.6	frequency=1	major_base=A	major_cov=44/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/32
RA	1063	.	1	1169267	0	C	T	bias_e_value=0.00551049	bias_p_value=2.54539e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.5	fisher_strand_p_value=1.0621e-10	frequency=2.091e-01	ks_quality_p_value=1	major_base=C	major_cov=62/25	major_frequency=7.909e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.091e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	1064	.	1	1169275	0	C	A	bias_e_value=0.00297267	bias_p_value=1.37313e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.4	fisher_strand_p_value=5.57972e-11	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=63/26	major_frequency=7.876e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.124e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=63/26	total_cov=63/50
RA	1065	.	1	1170184	0	T	C	consensus_score=232.8	frequency=1	major_base=C	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	1066	.	1	1171071	0	C	T	consensus_score=369.8	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	1067	.	1	1172982	0	G	A	bias_e_value=1725860	bias_p_value=0.797204	consensus_score=442.7	fisher_strand_p_value=0.438462	frequency=1	ks_quality_p_value=0.992396	major_base=A	major_cov=56/73	major_frequency=9.923e-01	minor_base=G	minor_cov=1/0	new_cov=56/73	polymorphism_frequency=9.923e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=57/73
RA	1068	.	1	1177822	0	A	G	consensus_score=412.7	frequency=1	major_base=G	major_cov=59/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/61
RA	1069	.	1	1182597	0	A	C	consensus_score=292.3	frequency=1	major_base=C	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	1070	.	1	1183348	0	T	G	bias_e_value=3.38687e-10	bias_p_value=1.56445e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.3	fisher_strand_p_value=3.80552e-18	frequency=2.778e-01	ks_quality_p_value=1	major_base=T	major_cov=18/73	major_frequency=7.222e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.778e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=18/73	total_cov=54/73
RA	1071	.	1	1185010	0	C	A	bias_e_value=1256390	bias_p_value=0.580349	consensus_score=363.2	fisher_strand_p_value=0.238491	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/55	major_frequency=9.815e-01	minor_base=G	minor_cov=2/0	new_cov=51/55	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/55
RA	1072	.	1	1186519	0	C	T	consensus_score=451.4	frequency=1	major_base=T	major_cov=73/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/60
RA	1073	.	1	1187147	0	A	G	consensus_score=458.0	frequency=1	major_base=G	major_cov=61/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/73
RA	1074	.	1	1192119	0	A	T	bias_e_value=264.99	bias_p_value=0.000122403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.8	fisher_strand_p_value=9.76348e-06	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=29/27	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=29/27	total_cov=29/48
RA	1075	.	1	1192148	0	C	T	bias_e_value=58.1913	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.5	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	1076	.	1	1211516	0	A	C	bias_e_value=1.38515e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.6	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=A	major_cov=70/21	major_frequency=7.109e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.891e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=70/21	total_cov=70/58
RA	1077	.	1	1220898	0	G	T	consensus_score=478.3	frequency=1	major_base=T	major_cov=74/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/66
RA	1078	.	1	1224678	0	T	G	bias_e_value=7.90026e-09	bias_p_value=3.64926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.2	fisher_strand_p_value=9.6341e-17	frequency=3.226e-01	ks_quality_p_value=1	major_base=T	major_cov=9/54	major_frequency=6.774e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.226e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=9/54	total_cov=39/54
RA	1079	.	1	1224691	0	C	T	bias_e_value=0.00382573	bias_p_value=1.76717e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.1	fisher_strand_p_value=7.25849e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=C	major_cov=17/52	major_frequency=7.582e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.418e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=17/52	total_cov=39/52
RA	1080	.	1	1224727	0	G	T	bias_e_value=0.00019902	bias_p_value=9.19309e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.6	fisher_strand_p_value=3.35254e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=16/58	major_frequency=7.629e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=16/58	total_cov=39/58
RA	1081	.	1	1226270	0	A	G	consensus_score=422.7	frequency=1	major_base=G	major_cov=61/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/63
RA	1082	.	1	1238857	0	C	T	consensus_score=325.7	frequency=1	major_base=T	major_cov=48/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/47
RA	1083	.	1	1241126	0	A	C	consensus_score=137.5	frequency=1	major_base=C	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	1084	.	1	1244031	0	A	G	consensus_score=286.1	frequency=1	major_base=G	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	1085	.	1	1253753	0	G	T	consensus_score=319.8	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	1086	.	1	1254812	0	C	A	bias_e_value=3.1842e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.9	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=54/14	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=54/14	total_cov=54/39
RA	1087	.	1	1254832	0	G	A	bias_e_value=0.121338	bias_p_value=5.60479e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.1	fisher_strand_p_value=2.70389e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=50/20	major_frequency=7.778e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=50/20	total_cov=50/40
RA	1088	.	1	1254836	0	G	A	bias_e_value=0.000109189	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.8	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=G	major_cov=50/14	major_frequency=7.191e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.809e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=50/14	total_cov=50/40
RA	1089	.	1	1254862	0	A	C	bias_e_value=0.00564017	bias_p_value=2.60529e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.1	fisher_strand_p_value=1.08908e-10	frequency=2.706e-01	ks_quality_p_value=0.999192	major_base=A	major_cov=46/16	major_frequency=7.294e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.706e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=46/16	total_cov=46/40
RA	1090	.	1	1256698	0	T	C	consensus_score=374.8	frequency=1	major_base=C	major_cov=51/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/59
RA	1091	.	1	1260044	0	C	T	bias_e_value=4.69993e-06	bias_p_value=2.17098e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=6.93615e-14	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=48/9	major_frequency=6.951e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=48/9	total_cov=48/34
RA	1092	.	1	1260495	0	A	G	consensus_score=328.4	frequency=1	major_base=G	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	1093	.	1	1264384	0	A	G	consensus_score=84.5	frequency=1	major_base=G	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	1094	.	1	1266235	0	G	A	bias_e_value=0.0138641	bias_p_value=6.40407e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.7	fisher_strand_p_value=2.81128e-10	frequency=2.667e-01	ks_quality_p_value=0.99035	major_base=G	major_cov=43/12	major_frequency=7.333e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.667e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	1095	.	1	1268207	0	G	A	bias_e_value=0.504209	bias_p_value=2.32903e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.7	fisher_strand_p_value=1.2112e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=G	major_cov=32/48	major_frequency=7.619e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.381e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=32/48	total_cov=57/48
RA	1096	.	1	1277546	0	A	G	consensus_score=340.5	frequency=1	major_base=G	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	1097	.	1	1289948	0	C	T	consensus_score=280.0	frequency=1	major_base=T	major_cov=45/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/37
RA	1098	.	1	1294917	0	C	A	consensus_score=123.9	frequency=1	major_base=A	major_cov=22/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/14
RA	1099	.	1	1306661	0	T	G	bias_e_value=4.18684e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.4	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=6.545e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.455e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=25/47	total_cov=63/47
RA	1100	.	1	1307428	0	T	C	consensus_score=420.7	frequency=1	major_base=C	major_cov=67/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/56
RA	1101	.	1	1311241	0	T	C	consensus_score=335.7	frequency=1	major_base=C	major_cov=47/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/53
RA	1102	.	1	1317399	0	C	T	consensus_score=344.0	frequency=1	major_base=T	major_cov=40/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/62
RA	1103	.	1	1318262	0	C	T	bias_e_value=968140	bias_p_value=0.4472	consensus_score=404.0	fisher_strand_p_value=0.156737	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/74	major_frequency=9.837e-01	minor_base=A	minor_cov=2/0	new_cov=47/74	polymorphism_frequency=9.837e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/74
RA	1104	.	1	1319604	0	T	C	consensus_score=412.9	frequency=1	major_base=C	major_cov=63/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/59
RA	1105	.	1	1325521	0	T	G	bias_e_value=5.01941e-11	bias_p_value=2.31855e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.9	fisher_strand_p_value=5.38375e-19	frequency=4.022e-01	ks_quality_p_value=1	major_base=T	major_cov=7/48	major_frequency=5.978e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=4.022e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=7/48	total_cov=44/48
RA	1106	.	1	1325548	0	T	G	bias_e_value=3.78642	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.2	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=35/41	major_frequency=7.451e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=35/41	total_cov=63/41
RA	1107	.	1	1325569	0	A	G	bias_e_value=23.7165	bias_p_value=1.0955e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.7	fisher_strand_p_value=7.23631e-07	frequency=2.308e-01	ks_quality_p_value=1	major_base=A	major_cov=39/41	major_frequency=7.692e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.308e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=39/41	total_cov=63/41
RA	1108	.	1	1337265	0	T	C	bias_e_value=2164860	bias_p_value=0.999986	consensus_score=458.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994754	major_base=C	major_cov=79/57	major_frequency=9.927e-01	minor_base=G	minor_cov=1/0	new_cov=79/57	polymorphism_frequency=9.927e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=80/57
RA	1109	.	1	1338166	0	A	C	consensus_score=403.0	frequency=1	major_base=C	major_cov=61/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/54
RA	1110	.	1	1342509	0	T	C	consensus_score=283.4	frequency=1	major_base=C	major_cov=50/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/33
RA	1111	.	1	1360686	0	C	T	consensus_score=201.6	frequency=1	major_base=T	major_cov=25/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/35
RA	1112	.	1	1361716	0	G	T	bias_e_value=0.0748473	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.2	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=G	major_cov=12/40	major_frequency=7.324e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=12/40	total_cov=31/40
RA	1113	.	1	1361736	0	C	T	bias_e_value=0.0749264	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.2	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=C	major_cov=11/38	major_frequency=7.206e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=11/38	total_cov=30/38
RA	1114	.	1	1363549	0	T	C	consensus_score=256.0	frequency=1	major_base=C	major_cov=31/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/42
RA	1115	.	1	1365469	0	A	G	consensus_score=152.3	frequency=1	major_base=G	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	1116	.	1	1365911	0	A	G	consensus_score=11.0	frequency=1	major_base=G	major_cov=3/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/2
RA	1117	.	1	1365912	0	C	T	consensus_score=10.2	frequency=1	major_base=T	major_cov=3/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/2
RA	1118	.	1	1365917	0	G	T	consensus_score=15.2	frequency=1	major_base=T	major_cov=4/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/2
RA	1119	.	1	1365978	0	G	A	consensus_score=96.9	frequency=1	major_base=A	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	1120	.	1	1367978	0	C	T	consensus_score=269.7	frequency=1	major_base=T	major_cov=46/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/33
RA	1121	.	1	1380511	0	T	C	consensus_score=369.1	frequency=1	major_base=C	major_cov=58/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/50
RA	1122	.	1	1380664	0	A	G	bias_e_value=2164880	bias_p_value=0.999997	consensus_score=52.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997519	major_base=G	major_cov=12/11	major_frequency=8.214e-01	minor_base=A	minor_cov=3/2	new_cov=12/11	polymorphism_frequency=8.214e-01	polymorphism_score=7.0	prediction=consensus	ref_cov=3/2	total_cov=15/13
RA	1123	.	1	1386377	0	G	A	consensus_score=331.6	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	1124	.	1	1392932	0	T	G	consensus_score=376.7	frequency=1	major_base=G	major_cov=63/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/45
RA	1125	.	1	1393451	0	T	C	consensus_score=366.8	frequency=1	major_base=C	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	1126	.	1	1394811	0	T	C	consensus_score=265.4	frequency=1	major_base=C	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	1127	.	1	1397693	0	G	A	bias_e_value=917.83	bias_p_value=0.000423962	consensus_score=240.4	fisher_strand_p_value=3.79214e-05	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/29	major_frequency=8.817e-01	minor_base=C	minor_cov=0/11	new_cov=53/29	polymorphism_frequency=8.817e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	1128	.	1	1402387	0	T	C	consensus_score=360.9	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	1129	.	1	1402896	0	G	A	consensus_score=372.0	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	1130	.	1	1408031	0	A	C	consensus_score=355.7	frequency=1	major_base=C	major_cov=55/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/50
RA	1131	.	1	1409517	0	T	A	bias_e_value=0.00950804	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.7	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	1132	.	1	1414482	0	A	G	consensus_score=361.4	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	1133	.	1	1425047	0	G	A	consensus_score=263.1	frequency=1	major_base=A	major_cov=35/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	1134	.	1	1425786	0	A	T	bias_e_value=4.02865e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.4	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	1135	.	1	1432417	0	T	C	consensus_score=243.2	frequency=1	major_base=C	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	1136	.	1	1438551	0	G	A	consensus_score=132.8	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1137	.	1	1442346	0	G	T	consensus_score=291.2	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	1138	.	1	1444501	0	T	C	consensus_score=213.5	frequency=1	major_base=C	major_cov=24/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/39
RA	1139	.	1	1445545	0	T	C	consensus_score=214.7	frequency=1	major_base=C	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	1140	.	1	1446394	0	C	T	consensus_score=267.0	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	1141	.	1	1447747	0	G	A	consensus_score=289.1	frequency=1	major_base=A	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	1142	.	1	1448590	0	G	C	consensus_score=220.9	frequency=1	major_base=C	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	1143	.	1	1452318	0	G	A	consensus_score=242.4	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	1144	.	1	1452348	0	A	G	consensus_score=205.7	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	1145	.	1	1452351	0	C	G	consensus_score=190.7	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	1146	.	1	1452357	0	C	T	consensus_score=214.8	frequency=1	major_base=T	major_cov=45/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/18
RA	1147	.	1	1452366	0	T	C	consensus_score=223.1	frequency=1	major_base=C	major_cov=45/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/21
RA	1148	.	1	1452396	0	T	C	consensus_score=230.1	frequency=1	major_base=C	major_cov=44/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/22
RA	1149	.	1	1452420	0	T	C	consensus_score=269.7	frequency=1	major_base=C	major_cov=56/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/24
RA	1150	.	1	1452432	0	C	T	consensus_score=277.8	frequency=1	major_base=T	major_cov=57/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/24
RA	1151	.	1	1452435	0	C	T	consensus_score=267.9	frequency=1	major_base=T	major_cov=57/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/24
RA	1152	.	1	1452447	0	A	G	consensus_score=278.0	frequency=1	major_base=G	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	1153	.	1	1452450	0	A	T	consensus_score=293.1	frequency=1	major_base=T	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	1154	.	1	1452462	0	A	G	consensus_score=307.3	frequency=1	major_base=G	major_cov=56/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/31
RA	1155	.	1	1452468	0	C	T	consensus_score=298.0	frequency=1	major_base=T	major_cov=57/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/31
RA	1156	.	1	1452472	0	T	C	consensus_score=301.1	frequency=1	major_base=C	major_cov=57/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/31
RA	1157	.	1	1452477	0	G	A	consensus_score=314.0	frequency=1	major_base=A	major_cov=57/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/32
RA	1158	.	1	1452483	0	G	A	consensus_score=293.3	frequency=1	major_base=A	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	1159	.	1	1452486	0	T	G	consensus_score=289.2	frequency=1	major_base=G	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	1160	.	1	1452496	0	C	T	consensus_score=289.8	frequency=1	major_base=T	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	1161	.	1	1452498	0	G	A	consensus_score=286.3	frequency=1	major_base=A	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	1162	.	1	1452501	0	T	G	bias_e_value=2164890	bias_p_value=1	consensus_score=297.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999726	major_base=G	major_cov=52/33	major_frequency=9.884e-01	minor_base=T	minor_cov=1/0	new_cov=52/33	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/33
RA	1163	.	1	1452531	0	T	C	consensus_score=304.8	frequency=1	major_base=C	major_cov=51/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/38
RA	1164	.	1	1452671	0	A	G	consensus_score=213.8	frequency=1	major_base=G	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	1165	.	1	1452702	0	C	T	consensus_score=259.1	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	1166	.	1	1452705	0	G	T	consensus_score=255.6	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	1167	.	1	1452723	0	C	T	consensus_score=282.8	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	1168	.	1	1452727	0	T	C	consensus_score=250.8	frequency=1	major_base=C	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	1169	.	1	1452738	0	T	C	consensus_score=274.6	frequency=1	major_base=C	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	1170	.	1	1452768	0	C	T	consensus_score=294.4	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1171	.	1	1452777	0	C	T	consensus_score=311.1	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	1172	.	1	1452780	0	T	G	consensus_score=299.8	frequency=1	major_base=G	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	1173	.	1	1452789	0	G	A	consensus_score=285.6	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	1174	.	1	1452791	0	A	G	consensus_score=279.8	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	1175	.	1	1452796	0	C	T	consensus_score=276.9	frequency=1	major_base=T	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	1176	.	1	1452797	0	T	G	consensus_score=295.1	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	1177	.	1	1452840	0	A	C	consensus_score=360.2	frequency=1	major_base=C	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	1178	.	1	1453130	0	T	C	consensus_score=161.3	frequency=1	major_base=C	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	1179	.	1	1453142	0	T	G	consensus_score=123.6	frequency=1	major_base=G	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1180	.	1	1453145	0	T	C	consensus_score=123.3	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1181	.	1	1453148	0	C	T	consensus_score=125.3	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1182	.	1	1453160	0	A	G	consensus_score=113.3	frequency=1	major_base=G	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	1183	.	1	1453166	0	C	T	consensus_score=47.7	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1184	.	1	1453172	0	G	A	consensus_score=47.8	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1185	.	1	1453173	0	T	C	consensus_score=52.6	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1186	.	1	1453178	0	C	A	consensus_score=51.2	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1187	.	1	1453181	0	A	G	consensus_score=46.9	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1188	.	1	1453187	0	C	A	consensus_score=51.8	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1189	.	1	1453190	0	A	G	consensus_score=49.3	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1190	.	1	1453193	0	T	A	consensus_score=50.5	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1191	.	1	1453196	0	G	T	consensus_score=48.0	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1192	.	1	1453200	0	G	A	consensus_score=51.7	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1193	.	1	1453202	0	A	C	consensus_score=48.2	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1194	.	1	1453203	0	A	G	consensus_score=50.3	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1195	.	1	1453214	0	C	T	consensus_score=48.2	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1196	.	1	1453217	0	A	T	consensus_score=47.6	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1197	.	1	1453220	0	G	A	consensus_score=47.6	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1198	.	1	1453226	0	A	G	consensus_score=50.0	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1199	.	1	1453227	0	T	C	consensus_score=53.1	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1200	.	1	1453229	0	A	G	consensus_score=51.1	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1201	.	1	1453231	0	A	C	consensus_score=51.8	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1202	.	1	1453232	0	G	A	consensus_score=49.2	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1203	.	1	1453236	0	C	G	consensus_score=51.2	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	1204	.	1	1453244	0	A	T	consensus_score=58.9	frequency=1	major_base=T	major_cov=4/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/15
RA	1205	.	1	1453247	0	T	G	consensus_score=60.1	frequency=1	major_base=G	major_cov=4/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/15
RA	1206	.	1	1453256	0	A	G	consensus_score=78.9	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	1207	.	1	1453259	0	T	C	consensus_score=78.7	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	1208	.	1	1453260	0	G	A	consensus_score=79.8	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	1209	.	1	1453274	0	T	C	consensus_score=102.1	frequency=1	major_base=C	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	1210	.	1	1453280	0	C	T	consensus_score=97.3	frequency=1	major_base=T	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	1211	.	1	1453283	0	T	C	consensus_score=96.4	frequency=1	major_base=C	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	1212	.	1	1453295	0	C	T	consensus_score=92.9	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1213	.	1	1453298	0	T	A	consensus_score=92.0	frequency=1	major_base=A	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	1214	.	1	1453310	0	G	A	consensus_score=123.8	frequency=1	major_base=A	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	1215	.	1	1453319	0	A	G	consensus_score=127.3	frequency=1	major_base=G	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1216	.	1	1453322	0	C	A	consensus_score=126.8	frequency=1	major_base=A	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1217	.	1	1453337	0	A	G	consensus_score=146.2	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	1218	.	1	1453349	0	C	T	consensus_score=171.8	frequency=1	major_base=T	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	1219	.	1	1453358	0	A	G	consensus_score=170.9	frequency=1	major_base=G	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	1220	.	1	1453367	0	A	G	consensus_score=181.3	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1221	.	1	1453368	0	T	C	consensus_score=185.7	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1222	.	1	1453394	0	A	G	consensus_score=248.9	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	1223	.	1	1453397	0	A	G	consensus_score=248.6	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	1224	.	1	1453427	0	A	T	consensus_score=268.0	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	1225	.	1	1453487	0	A	G	consensus_score=295.1	frequency=1	major_base=G	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	1226	.	1	1453499	0	G	A	consensus_score=271.7	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	1227	.	1	1453544	0	T	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	1228	.	1	1453552	0	C	T	consensus_score=246.1	frequency=1	major_base=T	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1229	.	1	1453559	0	T	C	consensus_score=222.1	frequency=1	major_base=C	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1230	.	1	1453562	0	C	T	consensus_score=219.6	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1231	.	1	1453572	0	C	T	consensus_score=236.9	frequency=1	major_base=T	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	1232	.	1	1453577	0	T	C	consensus_score=237.5	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1233	.	1	1453583	0	C	T	consensus_score=238.7	frequency=1	major_base=T	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1234	.	1	1453586	0	A	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1235	.	1	1453595	0	C	T	consensus_score=234.0	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	1236	.	1	1453601	0	G	T	consensus_score=244.9	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	1237	.	1	1453613	0	G	T	consensus_score=237.0	frequency=1	major_base=T	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	1238	.	1	1453616	0	A	G	consensus_score=232.6	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	1239	.	1	1453637	0	G	A	consensus_score=211.1	frequency=1	major_base=A	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	1240	.	1	1453643	0	C	T	consensus_score=221.9	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1241	.	1	1453649	0	G	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1242	.	1	1453679	0	A	G	consensus_score=239.6	frequency=1	major_base=G	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	1243	.	1	1453685	0	C	T	consensus_score=248.1	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	1244	.	1	1453718	0	C	T	bias_e_value=2164890	bias_p_value=1	consensus_score=269.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/34	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=45/34	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/34
RA	1245	.	1	1453739	0	T	C	consensus_score=286.0	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	1246	.	1	1453754	0	T	C	consensus_score=303.4	frequency=1	major_base=C	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	1247	.	1	1453759	0	C	T	bias_e_value=2164430	bias_p_value=0.999789	consensus_score=294.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979528	major_base=T	major_cov=49/39	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=49/39	polymorphism_frequency=9.888e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=50/39
RA	1248	.	1	1453797	0	C	T	consensus_score=319.1	frequency=1	major_base=T	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	1249	.	1	1453832	0	C	T	consensus_score=252.5	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1250	.	1	1453835	0	G	A	consensus_score=254.6	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1251	.	1	1453839	0	C	A	consensus_score=258.2	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1252	.	1	1453840	0	G	A	consensus_score=259.5	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1253	.	1	1453871	0	A	G	consensus_score=281.5	frequency=1	major_base=G	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	1254	.	1	1453964	0	G	A	consensus_score=233.8	frequency=1	major_base=A	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	1255	.	1	1453965	0	G	A	consensus_score=227.7	frequency=1	major_base=A	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	1256	.	1	1453991	0	C	A	consensus_score=238.2	frequency=1	major_base=A	major_cov=30/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/40
RA	1257	.	1	1454000	0	A	G	consensus_score=240.5	frequency=1	major_base=G	major_cov=27/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/42
RA	1258	.	1	1454009	0	G	C	bias_e_value=2164890	bias_p_value=1	consensus_score=234.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/41	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=29/41	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/42
RA	1259	.	1	1454015	0	G	T	consensus_score=244.2	frequency=1	major_base=T	major_cov=29/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/42
RA	1260	.	1	1454039	0	A	G	consensus_score=265.2	frequency=1	major_base=G	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	1261	.	1	1454045	0	A	G	consensus_score=283.4	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	1262	.	1	1454051	0	T	C	consensus_score=286.2	frequency=1	major_base=C	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	1263	.	1	1454081	0	C	T	consensus_score=287.2	frequency=1	major_base=T	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	1264	.	1	1454183	0	C	A	bias_e_value=2164890	bias_p_value=1	consensus_score=366.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=51/57	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=51/57	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/58
RA	1265	.	1	1454192	0	T	C	consensus_score=384.6	frequency=1	major_base=C	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	1266	.	1	1454204	0	G	A	consensus_score=367.0	frequency=1	major_base=A	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	1267	.	1	1454219	0	G	A	consensus_score=331.8	frequency=1	major_base=A	major_cov=46/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/52
RA	1268	.	1	1454255	0	C	T	consensus_score=291.4	frequency=1	major_base=T	major_cov=43/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/40
RA	1269	.	1	1454285	0	C	T	consensus_score=255.2	frequency=1	major_base=T	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	1270	.	1	1454303	0	G	A	consensus_score=234.6	frequency=1	major_base=A	major_cov=32/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	1271	.	1	1454306	0	G	A	bias_e_value=1809500	bias_p_value=0.835839	consensus_score=218.3	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/34	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=31/34	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/35
RA	1272	.	1	1454369	0	T	C	consensus_score=81.0	frequency=1	major_base=C	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1273	.	1	1454372	0	G	A	consensus_score=80.7	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1274	.	1	1454375	0	A	G	consensus_score=79.5	frequency=1	major_base=G	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1275	.	1	1454378	0	A	T	consensus_score=81.4	frequency=1	major_base=T	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1276	.	1	1454379	0	C	A	consensus_score=82.9	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1277	.	1	1454381	0	G	A	consensus_score=79.7	frequency=1	major_base=A	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	1278	.	1	1454390	0	A	G	consensus_score=99.0	frequency=1	major_base=G	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1279	.	1	1454393	0	G	A	consensus_score=94.3	frequency=1	major_base=A	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1280	.	1	1454396	0	T	G	consensus_score=97.6	frequency=1	major_base=G	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1281	.	1	1454399	0	C	T	consensus_score=92.3	frequency=1	major_base=T	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1282	.	1	1454402	0	T	C	consensus_score=97.5	frequency=1	major_base=C	major_cov=17/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/12
RA	1283	.	1	1454408	0	C	T	consensus_score=134.9	frequency=1	major_base=T	major_cov=23/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	1284	.	1	1454420	0	T	A	consensus_score=122.2	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1285	.	1	1454427	0	T	C	consensus_score=127.5	frequency=1	major_base=C	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1286	.	1	1454429	0	G	C	consensus_score=132.4	frequency=1	major_base=C	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1287	.	1	1454438	0	T	A	consensus_score=135.0	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1288	.	1	1454441	0	C	T	consensus_score=136.2	frequency=1	major_base=T	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	1289	.	1	1454450	0	A	G	consensus_score=132.8	frequency=1	major_base=G	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1290	.	1	1454453	0	C	A	consensus_score=132.9	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1291	.	1	1454457	0	C	T	consensus_score=128.7	frequency=1	major_base=T	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	1292	.	1	1454462	0	C	T	consensus_score=120.6	frequency=1	major_base=T	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	1293	.	1	1454465	0	G	A	consensus_score=121.5	frequency=1	major_base=A	major_cov=18/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/19
RA	1294	.	1	1454477	0	T	A	consensus_score=112.4	frequency=1	major_base=A	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	1295	.	1	1454482	0	C	A	consensus_score=103.5	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1296	.	1	1454483	0	G	A	consensus_score=100.3	frequency=1	major_base=A	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1297	.	1	1454487	0	C	T	consensus_score=99.9	frequency=1	major_base=T	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1298	.	1	1454498	0	C	T	consensus_score=101.5	frequency=1	major_base=T	major_cov=13/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/18
RA	1299	.	1	1454510	0	T	C	consensus_score=83.2	frequency=1	major_base=C	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	1300	.	1	1454516	0	C	G	consensus_score=87.3	frequency=1	major_base=G	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1301	.	1	1454519	0	C	A	consensus_score=83.5	frequency=1	major_base=A	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1302	.	1	1454521	0	C	T	consensus_score=82.2	frequency=1	major_base=T	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1303	.	1	1454528	0	C	A	consensus_score=83.4	frequency=1	major_base=A	major_cov=11/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/15
RA	1304	.	1	1454534	0	A	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1305	.	1	1454535	0	G	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1306	.	1	1454536	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1307	.	1	1454537	0	C	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1308	.	1	1454538	0	A	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1309	.	1	1454539	0	G	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1310	.	1	1454540	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1311	.	1	1454541	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1312	.	1	1454542	0	C	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1313	.	1	1454543	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1314	.	1	1454544	0	A	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1315	.	1	1454545	0	T	.	consensus_score=93.4	frequency=1	major_base=.	major_cov=9/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/13
RA	1316	.	1	1454589	0	T	A	consensus_score=89.1	frequency=1	major_base=A	major_cov=13/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/15
RA	1317	.	1	1454605	0	C	T	consensus_score=100.5	frequency=1	major_base=T	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	1318	.	1	1454612	0	C	A	bias_e_value=304895	bias_p_value=0.140836	consensus_score=65.6	fisher_strand_p_value=0.0316206	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/5	major_frequency=8.696e-01	minor_base=C	minor_cov=0/3	new_cov=15/5	polymorphism_frequency=8.696e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/3	total_cov=15/8
RA	1319	.	1	1454613	0	T	C	consensus_score=72.5	frequency=1	major_base=C	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	1320	.	1	1454617	0	C	T	consensus_score=75.8	frequency=1	major_base=T	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	1321	.	1	1454621	0	T	C	bias_e_value=446514	bias_p_value=0.206252	consensus_score=59.9	fisher_strand_p_value=0.0521739	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/7	major_frequency=8.800e-01	minor_base=T	minor_cov=0/3	new_cov=15/7	polymorphism_frequency=8.800e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/3	total_cov=15/10
RA	1322	.	1	1454638	0	A	G	consensus_score=103.9	frequency=1	major_base=G	major_cov=23/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/10
RA	1323	.	1	1454648	0	G	A	consensus_score=76.1	frequency=1	major_base=A	major_cov=20/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/8
RA	1324	.	1	1454651	0	G	A	consensus_score=82.8	frequency=1	major_base=A	major_cov=20/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/8
RA	1325	.	1	1454660	0	A	G	consensus_score=93.8	frequency=1	major_base=G	major_cov=19/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/10
RA	1326	.	1	1454667	0	A	G	consensus_score=95.0	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	1327	.	1	1454670	0	G	A	consensus_score=91.0	frequency=1	major_base=A	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	1328	.	1	1454678	0	G	C	consensus_score=103.5	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1329	.	1	1454681	0	G	A	consensus_score=106.7	frequency=1	major_base=A	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1330	.	1	1454683	0	C	T	consensus_score=99.4	frequency=1	major_base=T	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1331	.	1	1454688	0	T	C	consensus_score=130.7	frequency=1	major_base=C	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	1332	.	1	1454704	0	C	T	consensus_score=129.1	frequency=1	major_base=T	major_cov=23/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/17
RA	1333	.	1	1454927	0	T	C	consensus_score=196.6	frequency=1	major_base=C	major_cov=35/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/24
RA	1334	.	1	1454933	0	T	C	consensus_score=203.2	frequency=1	major_base=C	major_cov=35/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/24
RA	1335	.	1	1454939	0	T	C	consensus_score=149.0	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1336	.	1	1454943	0	T	C	consensus_score=144.4	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1337	.	1	1454945	0	T	C	consensus_score=141.3	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1338	.	1	1454947	0	A	C	consensus_score=147.0	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1339	.	1	1454948	0	G	A	consensus_score=149.7	frequency=1	major_base=A	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1340	.	1	1454955	0	C	T	consensus_score=159.2	frequency=1	major_base=T	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1341	.	1	1454957	0	A	G	consensus_score=161.3	frequency=1	major_base=G	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1342	.	1	1454972	0	C	T	consensus_score=163.1	frequency=1	major_base=T	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	1343	.	1	1454978	0	A	T	bias_e_value=1713940	bias_p_value=0.791699	consensus_score=162.3	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/20	major_frequency=9.796e-01	minor_base=A	minor_cov=0/1	new_cov=28/20	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/21
RA	1344	.	1	1454987	0	G	A	consensus_score=163.8	frequency=1	major_base=A	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	1345	.	1	1454989	0	A	G	consensus_score=168.3	frequency=1	major_base=G	major_cov=29/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	1346	.	1	1455021	0	T	C	consensus_score=137.9	frequency=1	major_base=C	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1347	.	1	1455023	0	G	C	consensus_score=142.8	frequency=1	major_base=C	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1348	.	1	1455027	0	A	G	consensus_score=139.2	frequency=1	major_base=G	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1349	.	1	1455030	0	C	A	consensus_score=137.8	frequency=1	major_base=A	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1350	.	1	1455032	0	T	G	consensus_score=143.5	frequency=1	major_base=G	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	1351	.	1	1455039	0	T	C	consensus_score=144.4	frequency=1	major_base=C	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	1352	.	1	1455057	0	A	G	consensus_score=123.9	frequency=1	major_base=G	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	1353	.	1	1455058	0	A	G	consensus_score=119.2	frequency=1	major_base=G	major_cov=22/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/15
RA	1354	.	1	1455063	0	C	T	consensus_score=117.5	frequency=1	major_base=T	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	1355	.	1	1455069	0	G	T	consensus_score=122.6	frequency=1	major_base=T	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	1356	.	1	1455072	0	G	A	consensus_score=118.5	frequency=1	major_base=A	major_cov=21/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/16
RA	1357	.	1	1455093	0	C	G	bias_e_value=1809500	bias_p_value=0.835839	consensus_score=88.9	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/15	major_frequency=9.412e-01	minor_base=A	minor_cov=0/2	new_cov=17/15	polymorphism_frequency=9.412e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	1358	.	1	1455102	0	C	T	consensus_score=106.2	frequency=1	major_base=T	major_cov=16/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/17
RA	1359	.	1	1455231	0	C	T	consensus_score=63.5	frequency=1	major_base=T	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	1360	.	1	1455241	0	C	T	consensus_score=43.6	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1361	.	1	1455243	0	A	G	consensus_score=44.8	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1362	.	1	1455246	0	C	T	consensus_score=41.8	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1363	.	1	1455249	0	G	A	consensus_score=41.8	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1364	.	1	1455250	0	G	A	consensus_score=41.9	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1365	.	1	1455253	0	G	T	consensus_score=42.7	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1366	.	1	1455257	0	G	A	consensus_score=41.3	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1367	.	1	1455258	0	T	C	consensus_score=43.0	frequency=1	major_base=C	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1368	.	1	1455261	0	T	G	consensus_score=42.0	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1369	.	1	1455264	0	T	C	consensus_score=42.5	frequency=1	major_base=C	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1370	.	1	1455267	0	A	T	consensus_score=42.0	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1371	.	1	1455268	0	G	A	consensus_score=40.8	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1372	.	1	1455270	0	G	T	consensus_score=41.8	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1373	.	1	1455273	0	C	T	consensus_score=42.0	frequency=1	major_base=T	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1374	.	1	1455276	0	G	A	consensus_score=41.2	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1375	.	1	1455279	0	T	A	consensus_score=42.3	frequency=1	major_base=A	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1376	.	1	1455285	0	T	G	consensus_score=45.1	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1377	.	1	1455287	0	C	G	consensus_score=41.9	frequency=1	major_base=G	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1378	.	1	1455288	0	A	C	consensus_score=43.6	frequency=1	major_base=C	major_cov=10/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/4
RA	1379	.	1	1455309	0	C	T	consensus_score=54.3	frequency=1	major_base=T	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1380	.	1	1455317	0	A	G	consensus_score=52.7	frequency=1	major_base=G	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1381	.	1	1455324	0	A	G	consensus_score=55.7	frequency=1	major_base=G	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	1382	.	1	1455343	0	C	T	consensus_score=39.7	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1383	.	1	1455345	0	C	T	consensus_score=39.5	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1384	.	1	1455347	0	T	C	consensus_score=40.5	frequency=1	major_base=C	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1385	.	1	1455348	0	A	T	consensus_score=37.4	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1386	.	1	1455352	0	A	G	consensus_score=40.6	frequency=1	major_base=G	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1387	.	1	1455368	0	T	A	consensus_score=39.9	frequency=1	major_base=A	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1388	.	1	1455369	0	G	T	consensus_score=39.3	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1389	.	1	1455370	0	A	T	consensus_score=39.8	frequency=1	major_base=T	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	1390	.	1	1455378	0	G	A	consensus_score=43.1	frequency=1	major_base=A	major_cov=6/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/8
RA	1391	.	1	1455387	1	.	T	consensus_score=53.9	frequency=1	major_base=T	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	1392	.	1	1455405	0	A	C	consensus_score=126.2	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	1393	.	1	1455409	0	A	C	consensus_score=122.0	frequency=1	major_base=C	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	1394	.	1	1455428	0	A	C	consensus_score=136.2	frequency=1	major_base=C	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1395	.	1	1455440	0	C	T	consensus_score=140.2	frequency=1	major_base=T	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	1396	.	1	1455465	0	C	T	consensus_score=189.2	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1397	.	1	1455500	0	T	C	consensus_score=241.1	frequency=1	major_base=C	major_cov=30/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/39
RA	1398	.	1	1455590	0	G	A	consensus_score=287.0	frequency=1	major_base=A	major_cov=42/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/43
RA	1399	.	1	1455601	0	C	T	consensus_score=282.0	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	1400	.	1	1455606	0	C	T	consensus_score=283.3	frequency=1	major_base=T	major_cov=41/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/42
RA	1401	.	1	1455632	0	A	G	consensus_score=234.0	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	1402	.	1	1455653	0	T	C	consensus_score=192.7	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1403	.	1	1455656	0	T	C	consensus_score=184.0	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1404	.	1	1455669	0	A	G	consensus_score=188.8	frequency=1	major_base=G	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1405	.	1	1455677	0	T	C	consensus_score=188.8	frequency=1	major_base=C	major_cov=25/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	1406	.	1	1455691	0	A	G	consensus_score=176.7	frequency=1	major_base=G	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	1407	.	1	1455704	0	C	T	consensus_score=165.0	frequency=1	major_base=T	major_cov=20/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/29
RA	1408	.	1	1455715	0	T	C	consensus_score=155.2	frequency=1	major_base=C	major_cov=18/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/27
RA	1409	.	1	1455730	0	T	C	consensus_score=132.8	frequency=1	major_base=C	major_cov=17/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/22
RA	1410	.	1	1455742	0	G	A	consensus_score=140.2	frequency=1	major_base=A	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	1411	.	1	1455748	0	G	A	consensus_score=133.0	frequency=1	major_base=A	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	1412	.	1	1455771	0	G	A	consensus_score=110.5	frequency=1	major_base=A	major_cov=17/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/17
RA	1413	.	1	1455775	0	T	A	consensus_score=98.4	frequency=1	major_base=A	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	1414	.	1	1455784	0	T	C	consensus_score=87.1	frequency=1	major_base=C	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1415	.	1	1455787	0	C	T	consensus_score=84.2	frequency=1	major_base=T	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1416	.	1	1455788	0	G	A	consensus_score=84.2	frequency=1	major_base=A	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	1417	.	1	1455802	0	C	T	consensus_score=74.5	frequency=1	major_base=T	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	1418	.	1	1455811	0	T	C	consensus_score=73.7	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1419	.	1	1455814	0	T	C	consensus_score=74.0	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1420	.	1	1455820	0	G	A	consensus_score=71.4	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1421	.	1	1455826	0	A	G	consensus_score=73.6	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1422	.	1	1455832	0	A	G	consensus_score=76.6	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1423	.	1	1455835	0	A	G	consensus_score=74.0	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1424	.	1	1455839	0	T	.	consensus_score=97.5	frequency=1	major_base=.	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1425	.	1	1455840	0	T	G	consensus_score=73.8	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1426	.	1	1455844	1	.	T	consensus_score=72.7	frequency=1	major_base=T	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1427	.	1	1455847	0	T	C	consensus_score=76.9	frequency=1	major_base=C	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1428	.	1	1455848	0	G	A	consensus_score=72.7	frequency=1	major_base=A	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	1429	.	1	1455855	0	A	G	consensus_score=90.7	frequency=1	major_base=G	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1430	.	1	1455952	0	A	G	consensus_score=40.4	frequency=1	major_base=G	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	1431	.	1	1455955	0	C	T	consensus_score=38.6	frequency=1	major_base=T	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	1432	.	1	1455963	0	T	C	consensus_score=37.3	frequency=1	major_base=C	major_cov=4/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/8
RA	1433	.	1	1455979	0	T	C	consensus_score=38.0	frequency=1	major_base=C	major_cov=3/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/10
RA	1434	.	1	1456019	0	T	C	consensus_score=50.5	frequency=1	major_base=C	major_cov=5/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/11
RA	1435	.	1	1456085	0	C	T	consensus_score=89.4	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1436	.	1	1456086	0	T	G	consensus_score=95.5	frequency=1	major_base=G	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1437	.	1	1456088	0	T	C	consensus_score=95.6	frequency=1	major_base=C	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1438	.	1	1456097	0	C	T	consensus_score=85.7	frequency=1	major_base=T	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1439	.	1	1456121	0	T	C	consensus_score=73.3	deleted=1	frequency=1	major_base=C	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	1440	.	1	1456125	0	A	C	consensus_score=68.8	deleted=1	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1441	.	1	1456127	0	T	A	consensus_score=67.0	deleted=1	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1442	.	1	1456128	0	A	C	consensus_score=69.7	deleted=1	frequency=1	major_base=C	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1443	.	1	1456131	0	C	A	consensus_score=66.4	deleted=1	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	1444	.	1	1456149	0	A	C	consensus_score=65.5	deleted=1	frequency=1	major_base=C	major_cov=7/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/13
RA	1445	.	1	1456163	0	A	C	consensus_score=45.6	deleted=1	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	1446	.	1	1456166	1	.	A	bias_e_value=2164890	bias_p_value=1	consensus_score=35.6	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1447	.	1	1456166	2	.	C	bias_e_value=2164890	bias_p_value=1	consensus_score=36.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1448	.	1	1456166	3	.	T	bias_e_value=2164890	bias_p_value=1	consensus_score=36.3	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1449	.	1	1456166	4	.	G	bias_e_value=2164890	bias_p_value=1	consensus_score=35.9	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1450	.	1	1456166	5	.	G	bias_e_value=2164890	bias_p_value=1	consensus_score=36.6	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1451	.	1	1456166	6	.	C	bias_e_value=2164890	bias_p_value=1	consensus_score=36.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.6	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1452	.	1	1456166	7	.	A	bias_e_value=1947370	bias_p_value=0.899524	consensus_score=38.8	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=A	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=5.2	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1453	.	1	1456166	8	.	G	bias_e_value=1947370	bias_p_value=0.899524	consensus_score=34.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.586646	major_base=G	major_cov=5/7	major_frequency=8.000e-01	minor_base=.	minor_cov=1/2	new_cov=5/7	polymorphism_frequency=8.000e-01	polymorphism_score=6.1	prediction=consensus	ref_cov=1/2	total_cov=6/9
RA	1454	.	1	1456176	0	T	C	consensus_score=37.9	deleted=1	frequency=1	major_base=C	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1455	.	1	1456179	0	C	T	consensus_score=37.3	deleted=1	frequency=1	major_base=T	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1456	.	1	1456185	0	A	G	consensus_score=35.7	deleted=1	frequency=1	major_base=G	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1457	.	1	1456194	0	T	C	consensus_score=37.8	deleted=1	frequency=1	major_base=C	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1458	.	1	1456196	0	A	G	consensus_score=35.9	deleted=1	frequency=1	major_base=G	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1459	.	1	1456197	0	A	G	consensus_score=35.7	deleted=1	frequency=1	major_base=G	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	1460	.	1	1456263	0	A	G	bias_e_value=2164760	bias_p_value=0.99994	consensus_score=34.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989071	major_base=G	major_cov=10/3	major_frequency=9.286e-01	minor_base=A	minor_cov=1/0	new_cov=10/3	polymorphism_frequency=9.286e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=1/0	total_cov=11/3
RA	1461	.	1	1456272	0	T	C	bias_e_value=2157380	bias_p_value=0.99653	consensus_score=39.9	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917856	major_base=C	major_cov=11/3	major_frequency=9.333e-01	minor_base=T	minor_cov=1/0	new_cov=11/3	polymorphism_frequency=9.333e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=12/3
RA	1462	.	1	1456281	0	C	T	bias_e_value=2026770	bias_p_value=0.9362	consensus_score=43.1	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.664757	major_base=T	major_cov=12/3	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=12/3	polymorphism_frequency=9.375e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=13/3
RA	1463	.	1	1456287	0	C	T	bias_e_value=2113580	bias_p_value=0.9763	consensus_score=48.2	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.790338	major_base=T	major_cov=13/4	major_frequency=9.444e-01	minor_base=C	minor_cov=1/0	new_cov=13/4	polymorphism_frequency=9.444e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=14/4
RA	1464	.	1	1456290	0	T	A	consensus_score=55.0	deleted=1	frequency=1	major_base=A	major_cov=14/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	1465	.	1	1456296	0	T	C	bias_e_value=1953800	bias_p_value=0.902491	consensus_score=63.4	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.59226	major_base=C	major_cov=14/7	major_frequency=9.545e-01	minor_base=T	minor_cov=1/0	new_cov=14/7	polymorphism_frequency=9.545e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=15/7
RA	1466	.	1	1456299	0	A	G	consensus_score=74.0	deleted=1	frequency=1	major_base=G	major_cov=15/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/7
RA	1467	.	1	1456308	0	T	C	bias_e_value=2098840	bias_p_value=0.969492	consensus_score=73.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.763379	major_base=C	major_cov=15/9	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1468	.	1	1456311	0	C	T	bias_e_value=1789590	bias_p_value=0.826641	consensus_score=73.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.472367	major_base=T	major_cov=15/9	major_frequency=9.600e-01	minor_base=C	minor_cov=1/0	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1469	.	1	1456320	0	T	C	consensus_score=79.6	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1470	.	1	1456326	0	C	T	consensus_score=85.0	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1471	.	1	1456329	0	A	T	consensus_score=81.6	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1472	.	1	1456332	0	T	C	consensus_score=81.8	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1473	.	1	1456338	0	C	T	consensus_score=80.5	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1474	.	1	1456341	0	T	C	consensus_score=81.7	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1475	.	1	1456344	0	T	C	consensus_score=78.7	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1476	.	1	1456347	0	T	C	consensus_score=82.7	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1477	.	1	1456348	0	T	C	consensus_score=82.3	frequency=1	major_base=C	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1478	.	1	1456353	0	G	A	consensus_score=78.8	frequency=1	major_base=A	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1479	.	1	1456356	0	C	T	consensus_score=80.6	frequency=1	major_base=T	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1480	.	1	1456361	0	A	G	consensus_score=84.4	frequency=1	major_base=G	major_cov=16/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/9
RA	1481	.	1	1456362	0	T	C	bias_e_value=2122100	bias_p_value=0.980236	consensus_score=73.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.807887	major_base=C	major_cov=15/9	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=15/9	polymorphism_frequency=9.600e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=16/9
RA	1482	.	1	1456368	0	A	T	consensus_score=104.0	frequency=1	major_base=T	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1483	.	1	1456371	0	G	C	consensus_score=103.2	frequency=1	major_base=C	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	1484	.	1	1456383	0	C	T	consensus_score=133.8	frequency=1	major_base=T	major_cov=25/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/15
RA	1485	.	1	1456392	0	G	A	bias_e_value=2116770	bias_p_value=0.977772	consensus_score=144.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.796703	major_base=A	major_cov=29/15	major_frequency=9.778e-01	minor_base=G	minor_cov=1/0	new_cov=29/15	polymorphism_frequency=9.778e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=30/15
RA	1486	.	1	1456410	0	A	G	bias_e_value=2147610	bias_p_value=0.99202	consensus_score=176.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.876353	major_base=G	major_cov=31/23	major_frequency=9.818e-01	minor_base=A	minor_cov=1/0	new_cov=31/23	polymorphism_frequency=9.818e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=32/23
RA	1487	.	1	1456422	0	T	C	bias_e_value=2136520	bias_p_value=0.986895	consensus_score=200.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.842537	major_base=C	major_cov=35/26	major_frequency=9.839e-01	minor_base=T	minor_cov=1/0	new_cov=35/26	polymorphism_frequency=9.839e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=36/26
RA	1488	.	1	1456434	0	T	C	bias_e_value=2141200	bias_p_value=0.989057	consensus_score=212.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.855757	major_base=C	major_cov=35/29	major_frequency=9.846e-01	minor_base=T	minor_cov=1/0	new_cov=35/29	polymorphism_frequency=9.846e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=36/29
RA	1489	.	1	1456467	0	C	T	bias_e_value=2164690	bias_p_value=0.999907	consensus_score=247.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986395	major_base=T	major_cov=39/33	major_frequency=9.863e-01	minor_base=C	minor_cov=1/0	new_cov=39/33	polymorphism_frequency=9.863e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=1/0	total_cov=40/33
RA	1490	.	1	1456483	0	C	A	bias_e_value=2164870	bias_p_value=0.999992	consensus_score=224.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995938	major_base=A	major_cov=35/31	major_frequency=9.851e-01	minor_base=C	minor_cov=1/0	new_cov=35/31	polymorphism_frequency=9.851e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=1/0	total_cov=36/31
RA	1491	.	1	1456485	0	T	G	bias_e_value=2164870	bias_p_value=0.999992	consensus_score=230.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995938	major_base=G	major_cov=35/31	major_frequency=9.851e-01	minor_base=T	minor_cov=1/0	new_cov=35/31	polymorphism_frequency=9.851e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=36/31
RA	1492	.	1	1456487	0	C	T	bias_e_value=2164330	bias_p_value=0.999743	consensus_score=215.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977415	major_base=T	major_cov=35/30	major_frequency=9.848e-01	minor_base=C	minor_cov=1/0	new_cov=35/30	polymorphism_frequency=9.848e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=36/31
RA	1493	.	1	1456500	0	A	G	bias_e_value=2164000	bias_p_value=0.999589	consensus_score=218.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971469	major_base=G	major_cov=33/33	major_frequency=9.851e-01	minor_base=A	minor_cov=1/0	new_cov=33/33	polymorphism_frequency=9.851e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=34/33
RA	1494	.	1	1456515	0	C	T	consensus_score=212.0	frequency=1	major_base=T	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	1495	.	1	1456524	0	T	A	consensus_score=190.9	frequency=1	major_base=A	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1496	.	1	1456527	0	G	T	consensus_score=197.0	frequency=1	major_base=T	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1497	.	1	1456530	0	A	C	consensus_score=186.2	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1498	.	1	1456533	0	T	C	consensus_score=196.1	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1499	.	1	1456584	0	T	C	consensus_score=247.8	frequency=1	major_base=C	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	1500	.	1	1456629	0	A	G	consensus_score=212.3	frequency=1	major_base=G	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	1501	.	1	1456632	0	T	A	consensus_score=214.0	frequency=1	major_base=A	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	1502	.	1	1456677	0	C	G	consensus_score=183.7	frequency=1	major_base=G	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	1503	.	1	1456680	0	G	T	consensus_score=189.2	frequency=1	major_base=T	major_cov=25/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/31
RA	1504	.	1	1456698	0	G	A	consensus_score=182.1	frequency=1	major_base=A	major_cov=28/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/27
RA	1505	.	1	1456704	0	G	A	consensus_score=165.3	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1506	.	1	1456705	0	A	C	consensus_score=166.6	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1507	.	1	1456707	0	G	A	consensus_score=166.9	frequency=1	major_base=A	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1508	.	1	1456710	0	A	C	consensus_score=170.9	frequency=1	major_base=C	major_cov=24/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/26
RA	1509	.	1	1456719	0	T	A	consensus_score=175.0	frequency=1	major_base=A	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	1510	.	1	1456725	0	A	T	consensus_score=175.8	frequency=1	major_base=T	major_cov=26/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	1511	.	1	1456732	0	T	G	consensus_score=157.3	frequency=1	major_base=G	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1512	.	1	1456733	0	C	A	consensus_score=143.2	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1513	.	1	1456740	0	C	T	consensus_score=164.5	frequency=1	major_base=T	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1514	.	1	1456743	0	C	A	consensus_score=163.6	frequency=1	major_base=A	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1515	.	1	1456746	0	A	T	consensus_score=163.4	frequency=1	major_base=T	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	1516	.	1	1456758	0	A	T	bias_e_value=1794870	bias_p_value=0.829081	consensus_score=176.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.475634	major_base=T	major_cov=30/22	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=30/22	polymorphism_frequency=9.811e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=31/22
RA	1517	.	1	1456768	0	A	G	consensus_score=156.0	frequency=1	major_base=G	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1518	.	1	1456770	0	G	A	consensus_score=145.9	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1519	.	1	1456773	0	T	C	consensus_score=155.1	frequency=1	major_base=C	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1520	.	1	1456779	0	G	A	consensus_score=148.8	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1521	.	1	1456780	0	G	A	consensus_score=146.6	frequency=1	major_base=A	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	1522	.	1	1456785	0	A	T	consensus_score=188.2	frequency=1	major_base=T	major_cov=33/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/20
RA	1523	.	1	1456800	0	A	C	consensus_score=172.3	frequency=1	major_base=C	major_cov=32/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/20
RA	1524	.	1	1456806	0	C	A	consensus_score=184.2	frequency=1	major_base=A	major_cov=33/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/22
RA	1525	.	1	1456812	0	T	C	consensus_score=200.2	frequency=1	major_base=C	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	1526	.	1	1456818	0	T	C	consensus_score=205.0	frequency=1	major_base=C	major_cov=35/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/25
RA	1527	.	1	1456892	0	C	T	consensus_score=208.9	frequency=1	major_base=T	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	1528	.	1	1456927	0	T	C	bias_e_value=1675730	bias_p_value=0.774046	consensus_score=238.3	fisher_strand_p_value=0.492754	frequency=1	ks_quality_p_value=0.828632	major_base=C	major_cov=33/35	major_frequency=9.855e-01	minor_base=.	minor_cov=1/0	new_cov=33/35	polymorphism_frequency=9.855e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	1529	.	1	1456972	0	G	A	consensus_score=236.9	frequency=1	major_base=A	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	1530	.	1	1460972	1	.	A	consensus_score=281.7	frequency=1	major_base=A	major_cov=42/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/40
RA	1531	.	1	1465775	0	G	A	bias_e_value=0.143197	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.9	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	1532	.	1	1471201	0	G	T	bias_e_value=0.183933	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.9	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	1533	.	1	1471305	0	G	A	consensus_score=248.1	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	1534	.	1	1471855	0	C	T	bias_e_value=0.0083733	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.8	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	1535	.	1	1475136	0	T	C	consensus_score=299.7	frequency=1	major_base=C	major_cov=28/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/58
RA	1536	.	1	1481912	0	T	C	consensus_score=211.9	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	1537	.	1	1491671	0	T	C	consensus_score=272.9	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	1538	.	1	1498414	0	A	C	bias_e_value=0.00142185	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.7	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	1539	.	1	1504237	0	T	G	consensus_score=361.5	frequency=1	major_base=G	major_cov=41/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/63
RA	1540	.	1	1508079	0	A	G	consensus_score=300.5	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	1541	.	1	1509988	0	A	.	consensus_score=501.9	frequency=1	major_base=.	major_cov=61/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/52
RA	1542	.	1	1517170	0	A	G	consensus_score=345.0	frequency=1	major_base=G	major_cov=44/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/58
RA	1543	.	1	1519586	0	T	C	consensus_score=258.0	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	1544	.	1	1522681	0	T	C	consensus_score=300.9	frequency=1	major_base=C	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	1545	.	1	1527046	0	T	G	bias_e_value=0.00531055	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.0	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	1546	.	1	1539573	0	T	.	consensus_score=106.5	frequency=1	major_base=.	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	1547	.	1	1542820	0	C	T	bias_e_value=1794600	bias_p_value=0.828956	consensus_score=285.3	fisher_strand_p_value=0.47561	frequency=1	ks_quality_p_value=0.999699	major_base=T	major_cov=38/43	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=38/43	polymorphism_frequency=9.878e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=39/43
RA	1548	.	1	1543625	0	C	T	consensus_score=252.6	frequency=1	major_base=T	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	1549	.	1	1546797	0	C	T	consensus_score=250.8	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	1550	.	1	1549549	0	T	C	consensus_score=294.1	frequency=1	major_base=C	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	1551	.	1	1562144	0	G	A	consensus_score=339.1	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1552	.	1	1562859	0	C	T	consensus_score=360.6	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	1553	.	1	1563338	0	A	C	consensus_score=324.1	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	1554	.	1	1569038	0	G	A	bias_e_value=0.000283426	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.0	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	1555	.	1	1569052	0	A	T	bias_e_value=0.024067	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.1	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	1556	.	1	1572599	0	A	G	consensus_score=308.0	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	1557	.	1	1572682	0	A	G	consensus_score=285.5	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	1558	.	1	1581320	0	T	C	consensus_score=360.8	frequency=1	major_base=C	major_cov=47/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/59
RA	1559	.	1	1582671	0	A	G	consensus_score=264.6	frequency=1	major_base=G	major_cov=44/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/35
RA	1560	.	1	1587891	0	A	G	bias_e_value=0.0142243	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.6	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	1561	.	1	1587920	0	T	G	bias_e_value=0.00280289	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.1	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	1562	.	1	1588305	0	A	G	consensus_score=374.1	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	1563	.	1	1592325	0	T	C	consensus_score=304.7	frequency=1	major_base=C	major_cov=43/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/48
RA	1564	.	1	1597355	0	A	G	consensus_score=284.5	frequency=1	major_base=G	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	1565	.	1	1609691	0	C	T	consensus_score=299.0	frequency=1	major_base=T	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	1566	.	1	1613290	0	G	A	consensus_score=256.5	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	1567	.	1	1614103	0	G	A	consensus_score=292.3	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	1568	.	1	1620924	0	G	A	consensus_score=396.6	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	1569	.	1	1621060	0	C	T	consensus_score=392.4	frequency=1	major_base=T	major_cov=42/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/73
RA	1570	.	1	1623682	0	T	C	consensus_score=317.5	frequency=1	major_base=C	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	1571	.	1	1635734	0	T	C	consensus_score=267.1	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	1572	.	1	1636160	0	C	T	bias_e_value=4.11111e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.8	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	1573	.	1	1644865	0	C	T	bias_e_value=1784730	bias_p_value=0.824398	consensus_score=344.6	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	1574	.	1	1651779	0	C	T	consensus_score=170.8	frequency=1	major_base=T	major_cov=18/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/33
RA	1575	.	1	1660004	0	A	G	bias_e_value=1808870	bias_p_value=0.83555	consensus_score=332.0	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=0.999176	major_base=G	major_cov=47/51	major_frequency=9.899e-01	minor_base=A	minor_cov=1/0	new_cov=47/51	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/51
RA	1576	.	1	1673856	0	G	A	consensus_score=230.6	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	1577	.	1	1676717	0	G	A	consensus_score=213.0	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	1578	.	1	1676780	0	C	T	consensus_score=201.7	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	1579	.	1	1688650	0	T	C	consensus_score=156.2	frequency=1	major_base=C	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	1580	.	1	1692930	0	A	C	consensus_score=185.2	frequency=1	major_base=C	major_cov=26/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	1581	.	1	1693140	0	C	G	bias_e_value=389.684	bias_p_value=0.000180002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.7	fisher_strand_p_value=1.6121e-05	frequency=3.871e-01	ks_quality_p_value=0.921477	major_base=C	major_cov=15/4	major_frequency=6.129e-01	minor_base=G	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=3.871e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=15/4	total_cov=15/17
RA	1582	.	1	1694421	0	A	C	consensus_score=245.0	frequency=1	major_base=C	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	1583	.	1	1701163	0	C	T	consensus_score=153.5	frequency=1	major_base=T	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1584	.	1	1703451	0	A	C	consensus_score=236.2	frequency=1	major_base=C	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	1585	.	1	1707063	0	C	A	consensus_score=158.9	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1586	.	1	1707584	0	G	A	consensus_score=162.9	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	1587	.	1	1714815	0	C	A	consensus_score=171.9	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	1588	.	1	1714984	0	C	T	consensus_score=135.5	frequency=1	major_base=T	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	1589	.	1	1715684	0	T	C	consensus_score=147.6	frequency=1	major_base=C	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1590	.	1	1716857	0	T	C	consensus_score=200.0	frequency=1	major_base=C	major_cov=28/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/29
RA	1591	.	1	1728188	0	A	.	consensus_score=274.6	frequency=1	major_base=.	major_cov=31/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/32
RA	1592	.	1	1732516	0	G	A	consensus_score=337.8	frequency=1	major_base=A	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	1593	.	1	1738050	0	G	A	consensus_score=336.0	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	1594	.	1	1738428	0	A	G	consensus_score=147.7	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	1595	.	1	1745617	0	T	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1596	.	1	1747914	0	T	C	consensus_score=58.4	frequency=1	major_base=C	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	1597	.	1	1748634	0	A	C	bias_e_value=2.22609e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.2	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	1598	.	1	1757258	0	T	C	consensus_score=342.5	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	1599	.	1	1775066	0	T	G	consensus_score=238.2	frequency=1	major_base=G	major_cov=34/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/35
RA	1600	.	1	1776164	0	G	A	consensus_score=239.3	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	1601	.	1	1776460	0	C	T	consensus_score=250.9	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1602	.	1	1791283	0	T	C	consensus_score=197.4	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	1603	.	1	1791739	0	G	A	bias_e_value=968.203	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	1604	.	1	1792162	0	T	C	consensus_score=233.0	frequency=1	major_base=C	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	1605	.	1	1795802	0	A	G	consensus_score=135.3	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	1606	.	1	1799664	0	A	G	bias_e_value=2164890	bias_p_value=1	consensus_score=260.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999649	major_base=G	major_cov=40/35	major_frequency=9.868e-01	minor_base=A	minor_cov=1/0	new_cov=40/35	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/35
RA	1607	.	1	1809178	0	C	T	bias_e_value=2162270	bias_p_value=0.998788	consensus_score=305.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.951181	major_base=T	major_cov=36/52	major_frequency=9.888e-01	minor_base=C	minor_cov=0/1	new_cov=36/52	polymorphism_frequency=9.888e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=36/53
RA	1608	.	1	1810410	0	T	C	consensus_score=260.1	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	1609	.	1	1810912	0	C	T	bias_e_value=863308	bias_p_value=0.398777	consensus_score=205.1	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	1610	.	1	1817609	0	T	C	consensus_score=165.7	frequency=1	major_base=C	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	1611	.	1	1824201	0	T	C	consensus_score=255.7	frequency=1	major_base=C	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1612	.	1	1828592	0	G	A	consensus_score=288.8	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	1613	.	1	1828959	0	C	T	consensus_score=306.9	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1614	.	1	1831318	0	T	C	consensus_score=271.2	frequency=1	major_base=C	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	1615	.	1	1832324	0	A	T	consensus_score=372.2	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	1616	.	1	1835798	0	A	C	bias_e_value=0.0315819	bias_p_value=1.45882e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.6	fisher_strand_p_value=6.58893e-10	frequency=2.568e-01	ks_quality_p_value=1	major_base=A	major_cov=43/12	major_frequency=7.432e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	1617	.	1	1836697	0	G	A	bias_e_value=0.00223024	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.8	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	1618	.	1	1848112	0	T	C	consensus_score=199.8	frequency=1	major_base=C	major_cov=50/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/12
RA	1619	.	1	1852814	0	G	A	consensus_score=362.2	frequency=1	major_base=A	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	1620	.	1	1867246	0	C	T	consensus_score=345.1	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	1621	.	1	1873656	0	A	G	consensus_score=313.4	frequency=1	major_base=G	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	1622	.	1	1874198	0	A	G	consensus_score=303.0	frequency=1	major_base=G	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	1623	.	1	1876492	0	T	C	consensus_score=457.6	frequency=1	major_base=C	major_cov=71/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/57
RA	1624	.	1	1877073	0	T	C	consensus_score=252.5	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	1625	.	1	1879885	0	T	C	consensus_score=303.0	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1626	.	1	1885636	0	G	A	consensus_score=306.9	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	1627	.	1	1892300	0	G	A	consensus_score=286.4	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	1628	.	1	1892762	0	C	T	consensus_score=285.1	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	1629	.	1	1894557	0	C	T	consensus_score=279.3	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	1630	.	1	1916803	0	C	T	bias_e_value=0.00171033	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.6	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	1631	.	1	1916828	0	C	T	bias_e_value=6.80985e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.1	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	1632	.	1	1916860	0	G	T	bias_e_value=1.20231	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	1633	.	1	1920292	0	T	C	consensus_score=125.9	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1634	.	1	1920474	0	A	G	consensus_score=154.4	frequency=1	major_base=G	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	1635	.	1	1930360	0	C	A	consensus_score=315.9	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	1636	.	1	1950170	0	C	T	consensus_score=338.5	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	1637	.	1	1954742	0	A	G	consensus_score=293.3	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	1638	.	1	1957279	0	A	G	consensus_score=277.8	frequency=1	major_base=G	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	1639	.	1	1959453	0	A	G	consensus_score=286.8	frequency=1	major_base=G	major_cov=49/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/38
RA	1640	.	1	1964489	0	T	G	bias_e_value=4.9316e-07	bias_p_value=2.27799e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=6.77457e-15	frequency=3.243e-01	ks_quality_p_value=1	major_base=T	major_cov=5/45	major_frequency=6.757e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.243e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=5/45	total_cov=29/45
RA	1641	.	1	1967630	0	G	A	bias_e_value=1801700	bias_p_value=0.832234	consensus_score=332.8	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	1642	.	1	1968516	0	T	C	consensus_score=343.2	frequency=1	major_base=C	major_cov=42/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/59
RA	1643	.	1	1978638	0	G	T	consensus_score=297.8	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	1644	.	1	1979707	0	T	C	consensus_score=273.9	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	1645	.	1	1993820	0	T	C	consensus_score=187.7	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	1646	.	1	2002598	0	A	C	consensus_score=161.0	frequency=1	major_base=C	major_cov=16/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/30
RA	1647	.	1	2002920	0	T	C	consensus_score=248.7	frequency=1	major_base=C	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	1648	.	1	2003214	0	T	C	consensus_score=255.3	frequency=1	major_base=C	major_cov=45/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	1649	.	1	2006005	0	G	T	consensus_score=216.4	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1650	.	1	2016888	0	T	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	1651	.	1	2019248	0	G	A	consensus_score=159.3	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	1652	.	1	2020887	0	T	G	bias_e_value=5.62209e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.0	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	1653	.	1	2022295	0	G	T	consensus_score=118.0	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	1654	.	1	2031545	0	C	T	bias_e_value=0.00151058	bias_p_value=6.97762e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.9	fisher_strand_p_value=2.75637e-11	frequency=2.545e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.455e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.545e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=2/39	total_cov=17/39
RA	1655	.	1	2032654	0	T	C	consensus_score=299.3	frequency=1	major_base=C	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	1656	.	1	2033676	0	C	T	bias_e_value=2164890	bias_p_value=1	consensus_score=262.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	1657	.	1	2041723	0	G	A	bias_e_value=2164890	bias_p_value=1	consensus_score=180.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/26	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=27/26	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=27/27
RA	1658	.	1	2044127	0	T	G	consensus_score=291.6	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1659	.	1	2044130	0	G	A	consensus_score=298.5	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1660	.	1	2052778	0	C	T	bias_e_value=1.04847e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.8	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	1661	.	1	2057097	0	T	C	consensus_score=278.5	frequency=1	major_base=C	major_cov=32/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/48
RA	1662	.	1	2064103	0	A	C	consensus_score=396.0	frequency=1	major_base=C	major_cov=64/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/49
RA	1663	.	1	2068186	0	C	A	consensus_score=262.4	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	1664	.	1	2071781	1	.	C	bias_e_value=579028	bias_p_value=0.267463	consensus_score=115.7	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=7.7	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	1665	.	1	2071781	2	.	C	bias_e_value=1483060	bias_p_value=0.685049	consensus_score=110.8	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=11.9	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	1666	.	1	2075647	0	T	C	consensus_score=200.9	frequency=1	major_base=C	major_cov=27/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/33
RA	1667	.	1	2078949	0	A	C	consensus_score=76.3	frequency=1	major_base=C	major_cov=14/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	1668	.	1	2080918	0	T	C	consensus_score=218.0	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	1669	.	1	2095202	0	T	C	consensus_score=270.9	frequency=1	major_base=C	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	1670	.	1	2098566	0	A	G	consensus_score=147.6	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	1671	.	1	2127536	0	G	T	bias_e_value=4118.89	bias_p_value=0.00190259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.5	fisher_strand_p_value=0.0001999	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=15/5	major_frequency=6.667e-01	minor_base=T	minor_cov=0/10	new_cov=0/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=15/5	total_cov=15/15
RA	1672	.	1	2127604	0	C	A	bias_e_value=0.174067	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	1673	.	1	2133001	0	G	T	consensus_score=246.2	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	1674	.	1	2133627	0	G	A	consensus_score=244.1	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1675	.	1	2138607	0	T	C	consensus_score=223.6	frequency=1	major_base=C	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	1676	.	1	2143665	0	T	C	consensus_score=178.9	frequency=1	major_base=C	major_cov=37/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/15
RA	1677	.	1	2152721	0	A	C	bias_e_value=1.94061e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.3	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=66.8	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	1678	.	1	2152742	0	G	A	bias_e_value=2761.36	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.6	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	1679	.	1	2154691	0	C	T	bias_e_value=1806220	bias_p_value=0.834322	consensus_score=90.3	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	1680	.	1	2156752	0	T	C	bias_e_value=372626	bias_p_value=0.172122	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.4	fisher_strand_p_value=0.0410503	frequency=7.255e-01	ks_quality_p_value=1	major_base=C	major_cov=14/23	major_frequency=7.255e-01	minor_base=T	minor_cov=1/13	new_cov=14/23	polymorphism_frequency=7.255e-01	polymorphism_score=33.3	prediction=polymorphism	ref_cov=1/13	total_cov=15/36
RA	1681	.	3	1745	0	T	C	consensus_score=207.2	frequency=1	major_base=C	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	1682	.	3	1754	0	T	C	consensus_score=198.4	frequency=1	major_base=C	major_cov=32/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/27
RA	1683	.	3	1970	0	C	T	consensus_score=233.7	frequency=1	major_base=T	major_cov=35/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/35
RA	1684	.	4	207	0	C	T	consensus_score=260.7	frequency=1	major_base=T	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	1685	.	4	213	0	T	C	bias_e_value=2164890	bias_p_value=1	consensus_score=292.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=41/42	major_frequency=9.881e-01	minor_base=T	minor_cov=1/0	new_cov=41/42	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/42
RA	1686	.	4	234	0	C	T	consensus_score=317.4	frequency=1	major_base=T	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1687	.	4	237	0	C	T	consensus_score=310.2	frequency=1	major_base=T	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1688	.	4	289	0	A	T	consensus_score=282.2	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	1689	.	4	295	0	T	C	bias_e_value=2164890	bias_p_value=1	consensus_score=257.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=49/29	major_frequency=9.873e-01	minor_base=T	minor_cov=1/0	new_cov=49/29	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=50/29
RA	1690	.	4	316	0	T	G	consensus_score=256.0	frequency=1	major_base=G	major_cov=47/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/27
RA	1691	.	4	319	0	G	T	consensus_score=255.1	frequency=1	major_base=T	major_cov=47/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/27
RA	1692	.	6	43	1	.	T	consensus_score=137.6	frequency=1	major_base=T	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1693	.	6	48	0	C	G	consensus_score=138.0	frequency=1	major_base=G	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1694	.	6	49	0	C	A	consensus_score=142.8	frequency=1	major_base=A	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1695	.	6	52	0	T	A	consensus_score=135.5	frequency=1	major_base=A	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1696	.	6	53	0	T	A	consensus_score=135.3	frequency=1	major_base=A	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1697	.	6	55	1	.	T	bias_e_value=1193810	bias_p_value=0.551443	consensus_score=133.2	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.483889	major_base=T	major_cov=18/23	major_frequency=9.762e-01	minor_base=.	minor_cov=1/0	new_cov=18/23	polymorphism_frequency=9.762e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/0	total_cov=19/23
RA	1698	.	6	56	0	G	C	bias_e_value=1193810	bias_p_value=0.551443	consensus_score=120.3	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.483889	major_base=C	major_cov=18/23	major_frequency=9.762e-01	minor_base=T	minor_cov=1/0	new_cov=18/23	polymorphism_frequency=9.762e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1699	.	6	57	0	G	A	bias_e_value=1576220	bias_p_value=0.728081	consensus_score=136.8	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.796409	major_base=A	major_cov=18/23	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=18/23	polymorphism_frequency=9.762e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	1700	.	6	64	0	C	T	consensus_score=148.1	frequency=1	major_base=T	major_cov=20/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/26
RA	1701	.	6	91	0	T	C	consensus_score=143.0	frequency=1	major_base=C	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	1702	.	6	92	0	A	C	consensus_score=144.1	frequency=1	major_base=C	major_cov=18/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/25
RA	1703	.	6	123	0	G	T	consensus_score=94.2	frequency=1	major_base=T	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	1704	.	6	131	0	C	T	bias_e_value=2164890	bias_p_value=1	consensus_score=81.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/16	major_frequency=9.630e-01	minor_base=C	minor_cov=0/1	new_cov=10/16	polymorphism_frequency=9.630e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=10/17
RA	1705	.	6	132	0	T	A	bias_e_value=1855730	bias_p_value=0.857192	consensus_score=76.8	fisher_strand_p_value=0.51567	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/15	major_frequency=9.259e-01	minor_base=C	minor_cov=0/2	new_cov=10/15	polymorphism_frequency=9.259e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1706	.	6	133	0	G	C	consensus_score=84.9	frequency=1	major_base=C	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1707	.	6	134	0	A	C	bias_e_value=1784130	bias_p_value=0.824122	consensus_score=72.0	fisher_strand_p_value=0.51567	frequency=1	ks_quality_p_value=0.909541	major_base=C	major_cov=10/15	major_frequency=9.259e-01	minor_base=A	minor_cov=0/2	new_cov=10/15	polymorphism_frequency=9.259e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/2	total_cov=10/17
RA	1708	.	6	136	0	G	A	consensus_score=86.9	frequency=1	major_base=A	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1709	.	6	138	0	T	A	consensus_score=85.5	frequency=1	major_base=A	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	1710	.	6	270	0	G	T	consensus_score=77.9	frequency=1	major_base=T	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	1711	.	6	329	0	G	A	consensus_score=91.6	frequency=1	major_base=A	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	1712	.	6	359	0	T	C	consensus_score=84.8	frequency=1	major_base=C	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	1713	.	6	370	0	G	A	consensus_score=83.3	frequency=1	major_base=A	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
MC	1714	.	1	124206	129499	99	5141	left_inside_cov=22	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1715	.	1	291416	291677	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=18	right_outside_cov=23
MC	1716	.	1	395556	396169	0	0	left_inside_cov=20	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1717	.	1	421394	421457	0	0	left_inside_cov=1	left_outside_cov=74	right_inside_cov=0	right_outside_cov=74
MC	1718	.	1	755534	755554	0	0	left_inside_cov=0	left_outside_cov=55	right_inside_cov=0	right_outside_cov=56
MC	1719	.	1	939359	942646	109	3123	left_inside_cov=22	left_outside_cov=24	right_inside_cov=21	right_outside_cov=23
MC	1720	.	1	1373085	1378434	5155	139	left_inside_cov=22	left_outside_cov=24	right_inside_cov=22	right_outside_cov=24
MC	1721	.	1	1379260	1379264	0	0	left_inside_cov=0	left_outside_cov=77	right_inside_cov=0	right_outside_cov=75
MC	1722	.	1	1456121	1456299	0	0	left_inside_cov=22	left_outside_cov=25	right_inside_cov=22	right_outside_cov=24
MC	1723	.	1	1723309	1723344	0	0	left_inside_cov=0	left_outside_cov=74	right_inside_cov=0	right_outside_cov=74
MC	1724	.	1	1759100	1764547	5227	165	left_inside_cov=21	left_outside_cov=24	right_inside_cov=22	right_outside_cov=23
MC	1725	.	1	1965734	1965801	0	0	left_inside_cov=0	left_outside_cov=94	right_inside_cov=0	right_outside_cov=93
MC	1726	.	1	2118691	2119810	0	0	left_inside_cov=21	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1727	.	2	1	4576	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=NA
MC	1728	.	3	1	1619	0	0	left_inside_cov=16	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=71
MC	1729	.	5	1	54	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=0	right_outside_cov=71
MC	1730	.	5	379	439	0	0	left_inside_cov=51	left_outside_cov=52	right_inside_cov=0	right_outside_cov=NA
JC	1731	.	1	1	1	6	396	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1__1__6__396__-1__0____251__251__0__0	max_left=250	max_left_minus=214	max_left_plus=250	max_min_left=72	max_min_left_minus=69	max_min_left_plus=72	max_min_right=103	max_min_right_minus=103	max_min_right_plus=102	max_pos_hash_score=430	max_right=242	max_right_minus=242	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.52	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	1732	.	1	68897	-1	1	69506	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.517e-02	junction_possible_overlap_registers=208	key=1__68897__-1__1__69512__-1__6____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=144	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=100	max_min_right_minus=23	max_min_right_plus=100	max_pos_hash_score=418	max_right=127	max_right_minus=23	max_right_plus=127	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	1733	.	1	77763	-1	1	78271	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__77763__-1__1__78281__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	1734	.	1	126180	1	1	126319	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__126180__1__1__126302__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	1735	.	1	126196	-1	1	126301	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__126196__-1__1__126318__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	1736	.	1	127132	-1	1	127269	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__127132__-1__1__127272__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	1737	.	1	133049	1	1	133292	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__133049__1__1__133283__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	1738	.	1	157668	-1	1	157878	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=209	key=1__157668__-1__1__157883__-1__5____251__251__1__1	max_left=142	max_left_minus=142	max_left_plus=55	max_min_left=55	max_min_left_minus=3	max_min_left_plus=55	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=420	max_right=244	max_right_minus=244	max_right_plus=243	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=5	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	1739	.	1	194338	-1	1	195270	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.980e-02	junction_possible_overlap_registers=207	key=1__194338__-1__1__195277__-1__7____251__251__0__0	max_left=108	max_left_minus=56	max_left_plus=108	max_min_left=108	max_min_left_minus=56	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=187	max_right_minus=187	max_right_plus=136	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	1740	.	1	195528	1	1	195651	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.059e-02	junction_possible_overlap_registers=203	key=1__195528__1__1__195640__1__11____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=41	max_min_left=103	max_min_left_minus=103	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=194	max_right_minus=136	max_right_plus=194	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	1741	.	1	222111	-1	1	222112	1	-12	alignment_overlap=-12	coverage_minus=117	coverage_plus=169	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=202	key=1__222111__-1__1__222112__1__-12__TTCTCTTTCTCT__251__251__0__1	max_left=222	max_left_minus=219	max_left_plus=222	max_min_left=118	max_min_left_minus=118	max_min_left_plus=118	max_min_right=119	max_min_right_minus=117	max_min_right_plus=119	max_pos_hash_score=354	max_right=232	max_right_minus=232	max_right_plus=230	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.63	new_junction_read_count=300	polymorphism_frequency=8.088e-01	pos_hash_score=113	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=26	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=188	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=286	unique_read_sequence=TTCTCTTTCTCT
JC	1742	.	1	325076	1	1	325424	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__325076__1__1__325412__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	1743	.	1	348018	-1	1	348188	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__348018__-1__1__348194__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	1744	.	1	348051	-1	1	348158	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__348051__-1__1__348168__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	1745	.	1	371451	-1	1	371629	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__371451__-1__1__371635__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	1746	.	1	374753	-1	1	375124	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__374753__-1__1__375134__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	1747	.	1	384674	-1	1	384779	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__384674__-1__1__384789__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	1748	.	1	389216	1	1	390344	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__389216__1__1__390334__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	1749	.	1	421393	-1	1	421458	1	0	alignment_overlap=48	coverage_minus=36	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=166	key=1__421393__-1__1__421410__1__48____251__251__0__0	max_left=195	max_left_minus=172	max_left_plus=195	max_min_left=89	max_min_left_minus=83	max_min_left_plus=89	max_min_right=101	max_min_right_minus=101	max_min_right_plus=72	max_pos_hash_score=334	max_right=199	max_right_minus=199	max_right_plus=190	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.90	new_junction_read_count=61	polymorphism_frequency=9.937e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=48	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=166	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	1750	.	1	442390	1	1	442558	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__442390__1__1__442553__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.38	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	1751	.	1	460451	1	1	460626	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__460451__1__1__460614__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	1752	.	1	489985	1	1	490139	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__489985__1__1__490126__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	1753	.	1	569149	-1	1	569269	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__569149__-1__1__569277__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	1754	.	1	584828	-1	1	584829	1	-5	alignment_overlap=-5	coverage_minus=39	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__584828__-1__1__584829__1__-5__AGTCC__251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=220	max_min_left=106	max_min_left_minus=106	max_min_left_plus=95	max_min_right=119	max_min_right_minus=119	max_min_right_plus=102	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=196	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76	unique_read_sequence=AGTCC
JC	1755	.	1	600161	-1	1	600162	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__600161__-1__1__600162__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	1756	.	1	642527	-1	1	643327	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__642527__-1__1__643333__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	1757	.	1	665312	-1	1	665313	1	-3	alignment_overlap=-3	coverage_minus=44	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__665312__-1__1__665313__1__-3__CAC__251__251__0__0	max_left=241	max_left_minus=237	max_left_plus=241	max_min_left=119	max_min_left_minus=119	max_min_left_plus=114	max_min_right=116	max_min_right_minus=116	max_min_right_plus=101	max_pos_hash_score=422	max_right=238	max_right_minus=238	max_right_plus=221	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.11	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=213	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=95	unique_read_sequence=CAC
JC	1758	.	1	682299	-1	1	2156748	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1.005e-01	junction_possible_overlap_registers=209	key=1__682304__-1__1__2156748__-1__5____251__251__1__0	max_left=244	max_left_minus=243	max_left_plus=244	max_min_left=87	max_min_left_minus=0	max_min_left_plus=87	max_min_right=55	max_min_right_minus=55	max_min_right_plus=3	max_pos_hash_score=420	max_right=142	max_right_minus=55	max_right_plus=142	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=1.005e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=5	side_2_possible_overlap_registers=214	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=5
JC	1759	.	1	683195	1	1	683714	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__683195__1__1__683700__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1760	.	1	752195	-1	1	752235	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__752195__-1__1__752243__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	1761	.	1	755533	-1	1	755555	1	0	alignment_overlap=16	coverage_minus=30	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=198	key=1__755533__-1__1__755539__1__16____251__251__0__0	max_left=214	max_left_minus=214	max_left_plus=123	max_min_left=113	max_min_left_minus=105	max_min_left_plus=113	max_min_right=112	max_min_right_minus=88	max_min_right_plus=112	max_pos_hash_score=398	max_right=226	max_right_minus=226	max_right_plus=226	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.58	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=16	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	1762	.	1	787675	1	1	788185	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__787675__1__1__788170__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.93	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
JC	1763	.	1	834824	-1	1	834917	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__834824__-1__1__834924__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	1764	.	1	876554	-1	1	876744	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.674e-02	junction_possible_overlap_registers=202	key=1__876554__-1__1__876756__-1__12____251__251__0__0	max_left=87	max_left_minus=0	max_left_plus=87	max_min_left=87	max_min_left_minus=0	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.674e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.50	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=3
JC	1765	.	1	954506	-1	1	954507	1	-3	alignment_overlap=-3	coverage_minus=33	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__954506__-1__1__954507__1__-3__AAT__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=122	max_min_left_minus=108	max_min_left_plus=122	max_min_right=111	max_min_right_minus=111	max_min_right_plus=111	max_pos_hash_score=418	max_right=231	max_right_minus=231	max_right_plus=219	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=AAT
JC	1766	.	1	956593	1	1	956758	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.271e-02	junction_possible_overlap_registers=204	key=1__956593__1__1__956748__1__10____251__251__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=75	max_min_right_minus=75	max_min_right_plus=45	max_pos_hash_score=410	max_right=117	max_right_minus=117	max_right_plus=117	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.271e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=5
JC	1767	.	1	963943	1	1	964050	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.834e-02	junction_possible_overlap_registers=203	key=1__963943__1__1__964039__1__11____251__251__0__0	max_left=88	max_left_minus=88	max_left_plus=88	max_min_left=88	max_min_left_minus=88	max_min_left_plus=86	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=408	max_right=154	max_right_minus=154	max_right_plus=147	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.834e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	1768	.	1	1044075	1	1	1044419	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.148e-02	junction_possible_overlap_registers=202	key=1__1044075__1__1__1044407__1__12____251__251__0__0	max_left=147	max_left_minus=147	max_left_plus=85	max_min_left=85	max_min_left_minus=65	max_min_left_plus=85	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=406	max_right=154	max_right_minus=101	max_right_plus=154	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.148e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	1769	.	1	1074238	1	1	1074794	1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.927e-02	junction_possible_overlap_registers=201	key=1__1074238__1__1__1074781__1__13____251__251__0__0	max_left=81	max_left_minus=81	max_left_plus=43	max_min_left=81	max_min_left_minus=81	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=178	max_right_minus=157	max_right_plus=178	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.927e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.48	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	1770	.	1	1157797	-1	1	1158062	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__1157797__-1__1__1158070__-1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=414	max_right=82	max_right_minus=46	max_right_plus=82	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.73	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.75	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	1771	.	1	1215439	-1	1	1215440	1	-5	alignment_overlap=-5	coverage_minus=59	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1215439__-1__1__1215440__1__-5__ATTTT__251__251__0__0	max_left=242	max_left_minus=230	max_left_plus=242	max_min_left=116	max_min_left_minus=112	max_min_left_plus=116	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=404	max_right=244	max_right_minus=244	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103	unique_read_sequence=ATTTT
JC	1772	.	1	1221331	1	1	1221459	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.139e-02	junction_possible_overlap_registers=209	key=1__1221331__1__1__1221454__1__5____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=73	max_min_left=117	max_min_left_minus=117	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=420	max_right=173	max_right_minus=129	max_right_plus=173	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.139e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.71	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.50	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	1773	.	1	1255592	-1	1	1256379	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.328e-02	junction_possible_overlap_registers=204	key=1__1255592__-1__1__1256389__-1__10____251__251__0__0	max_left=138	max_left_minus=138	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=103	max_min_right_minus=103	max_min_right_plus=0	max_pos_hash_score=410	max_right=146	max_right_minus=146	max_right_plus=142	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.328e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=3
JC	1774	.	1	1282663	1	1	1282779	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.968e-02	junction_possible_overlap_registers=207	key=1__1282663__1__1__1282772__1__7____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=77	max_min_left=103	max_min_left_minus=103	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=166	max_right_minus=155	max_right_plus=166	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.968e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	1775	.	1	1316739	-1	1	1317225	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=7.278e-02	junction_possible_overlap_registers=209	key=1__1316739__-1__1__1317230__-1__5____251__251__0__0	max_left=206	max_left_minus=206	max_left_plus=171	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=100	max_min_right_minus=72	max_min_right_plus=100	max_pos_hash_score=420	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=7.278e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=9
JC	1776	.	1	1337151	1	1	1337528	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.443e-02	junction_possible_overlap_registers=210	key=1__1337151__1__1__1337524__1__4____251__251__0__0	max_left=228	max_left_minus=194	max_left_plus=228	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=19	max_pos_hash_score=422	max_right=88	max_right_minus=88	max_right_plus=19	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.443e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	1777	.	1	1338705	-1	1	1338706	1	-4	alignment_overlap=-4	coverage_minus=53	coverage_plus=44	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__1338705__-1__1__1338706__1__-4__AACA__251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=228	max_min_left=122	max_min_left_minus=120	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=116	max_pos_hash_score=418	max_right=246	max_right_minus=246	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.13	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=2	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=212	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97	unique_read_sequence=AACA
JC	1778	.	1	1369068	-1	1	1369390	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.165e-02	junction_possible_overlap_registers=205	key=1__1369068__-1__1__1369399__-1__9____251__251__0__0	max_left=129	max_left_minus=129	max_left_plus=122	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=120	max_min_right_minus=113	max_min_right_plus=120	max_pos_hash_score=412	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=4
JC	1779	.	1	1379259	-1	1	1379265	1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=34	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__1379259__-1__1__1379260__1__5____251__251__0__0	max_left=244	max_left_minus=238	max_left_plus=244	max_min_left=117	max_min_left_minus=117	max_min_left_plus=106	max_min_right=121	max_min_right_minus=121	max_min_right_plus=119	max_pos_hash_score=420	max_right=245	max_right_minus=212	max_right_plus=245	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.85	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73
JC	1780	.	1	1392927	-1	1	1393244	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__1392927__-1__1__1393253__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	1781	.	1	1408553	1	1	1408896	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__1408553__1__1__1408886__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	1782	.	1	1430024	-1	1	1430107	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__1430024__-1__1__1430115__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1783	.	1	1484136	1	1	1484714	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__1484136__1__1__1484704__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	1784	.	1	1495399	-1	1	1495965	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__1495399__-1__1__1495975__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	1785	.	1	1542185	-1	1	1542431	-1	0	alignment_overlap=12	coverage_minus=8	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.087e-01	junction_possible_overlap_registers=202	key=1__1542185__-1__1__1542443__-1__12____251__251__0__0	max_left=106	max_left_minus=106	max_left_plus=85	max_min_left=106	max_min_left_minus=106	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=221	max_right_minus=221	max_right_plus=153	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.087e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=10
JC	1786	.	1	1553645	-1	1	1553779	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__1553645__-1__1__1553785__-1__6____251__251__0__0	max_left=198	max_left_minus=74	max_left_plus=198	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	1787	.	1	1576954	1	1	1577304	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__1576954__1__1__1577293__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	1788	.	1	1584411	-1	1	1584484	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__1584411__-1__1__1584493__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	1789	.	1	1646877	-1	1	1646878	1	-9	alignment_overlap=-9	coverage_minus=43	coverage_plus=56	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1646877__-1__1__1646878__1__-9__TACTTCGTG__251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=110	max_min_left_minus=105	max_min_left_plus=110	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=396	max_right=238	max_right_minus=238	max_right_plus=234	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.17	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TACTTCGTG
JC	1790	.	1	1714659	-1	1	1714785	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.082e-02	junction_possible_overlap_registers=207	key=1__1714659__-1__1__1714792__-1__7____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=117	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=110	max_min_right_minus=110	max_min_right_plus=0	max_pos_hash_score=416	max_right=126	max_right_minus=110	max_right_plus=126	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.082e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=3
JC	1791	.	1	1723308	-1	1	1723345	1	0	alignment_overlap=34	coverage_minus=32	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=180	key=1__1723308__-1__1__1723311__1__34____251__251__0__0	max_left=201	max_left_minus=201	max_left_plus=200	max_min_left=103	max_min_left_minus=103	max_min_left_plus=85	max_min_right=105	max_min_right_minus=101	max_min_right_plus=105	max_pos_hash_score=362	max_right=209	max_right_minus=209	max_right_plus=200	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.92	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=34	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=180	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	1792	.	1	1726309	-1	1	1726557	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.427e-02	junction_possible_overlap_registers=206	key=1__1726309__-1__1__1726565__-1__8____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=41	max_min_left=50	max_min_left_minus=50	max_min_left_plus=41	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=414	max_right=201	max_right_minus=129	max_right_plus=201	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.427e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	1793	.	1	1839049	-1	1	1839053	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__1839049__-1__1__1839066__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	1794	.	1	1856642	-1	1	1856992	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__1856642__-1__1__1856998__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	1795	.	1	1864700	1	1	1864994	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__1864700__1__1__1864985__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	1796	.	1	1922779	-1	1	1923031	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__1922779__-1__1__1923035__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	1797	.	1	1925441	1	1	1925828	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__1925441__1__1__1925819__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	1798	.	1	1953570	1	1	1954262	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__1953570__1__1__1954255__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	1799	.	1	1965733	-1	1	1965802	1	0	alignment_overlap=32	coverage_minus=39	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=182	key=1__1965733__-1__1__1965770__1__32____251__251__0__0	max_left=216	max_left_minus=216	max_left_plus=197	max_min_left=106	max_min_left_minus=96	max_min_left_plus=106	max_min_right=105	max_min_right_minus=105	max_min_right_plus=105	max_pos_hash_score=366	max_right=217	max_right_minus=217	max_right_plus=207	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=182	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74
JC	1800	.	1	1971965	1	1	1972211	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__1971965__1__1__1972200__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	1801	.	1	1978173	1	1	1978300	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__1978173__1__1__1978295__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	1802	.	1	1978177	-1	1	1978294	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__1978177__-1__1__1978299__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	1803	.	1	2013778	1	1	2013762	-1	0	alignment_overlap=28	coverage_minus=18	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=186	key=1__2013778__1__1__2013790__-1__28____251__251__0__0	max_left=221	max_left_minus=186	max_left_plus=221	max_min_left=109	max_min_left_minus=54	max_min_left_plus=109	max_min_right=102	max_min_right_minus=77	max_min_right_plus=102	max_pos_hash_score=374	max_right=217	max_right_minus=213	max_right_plus=217	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.70	new_junction_read_count=53	polymorphism_frequency=9.498e-01	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=28	side_1_possible_overlap_registers=214	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=53
JC	1804	.	1	2033224	-1	1	2033274	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__2033224__-1__1__2033296__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	1805	.	1	2079052	-1	1	2079324	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.759e-02	junction_possible_overlap_registers=206	key=1__2079052__-1__1__2079332__-1__8____251__251__0__1	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.759e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	1806	.	1	2099617	1	1	2099830	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__2099617__1__1__2099824__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	1807	.	1	2105768	-1	1	2105960	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.534e-02	junction_possible_overlap_registers=205	key=1__2105768__-1__1__2105969__-1__9____251__251__0__0	max_left=168	max_left_minus=57	max_left_plus=168	max_min_left=74	max_min_left_minus=57	max_min_left_plus=74	max_min_right=30	max_min_right_minus=0	max_min_right_plus=30	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.534e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=4
JC	1808	.	1	2146376	-1	1	2146976	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__2146376__-1__1__2146986__-1__10____251__251__0__0	max_left=226	max_left_minus=146	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	1809	.	1	2148238	1	1	2148496	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.276e-02	junction_possible_overlap_registers=205	key=1__2148238__1__1__2148487__1__9____251__251__0__0	max_left=213	max_left_minus=47	max_left_plus=213	max_min_left=99	max_min_left_minus=47	max_min_left_plus=99	max_min_right=29	max_min_right_minus=0	max_min_right_plus=29	max_pos_hash_score=412	max_right=161	max_right_minus=161	max_right_plus=143	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.276e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	1810	.	1	2156994	-1	4	1	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__2156994__-1__4__1__1__0____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=221	max_min_left=125	max_min_left_minus=115	max_min_left_plus=125	max_min_right=109	max_min_right_minus=101	max_min_right_plus=109	max_pos_hash_score=430	max_right=250	max_right_minus=233	max_right_plus=250	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.05	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81
JC	1811	.	3	1	1	4	454	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=3__1__1__4__454__-1__0____251__251__0__0	max_left=20	max_left_minus=11	max_left_plus=20	max_min_left=20	max_min_left_minus=11	max_min_left_plus=20	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=430	max_right=247	max_right_minus=247	max_right_plus=231	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.29	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=16
JC	1812	.	3	1620	1	5	55	1	0	alignment_overlap=3	coverage_minus=33	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=3__1620__1__5__52__1__3____251__251__0__0	max_left=243	max_left_minus=243	max_left_plus=237	max_min_left=119	max_min_left_minus=98	max_min_left_plus=119	max_min_right=122	max_min_right_minus=118	max_min_right_plus=122	max_pos_hash_score=424	max_right=239	max_right_minus=235	max_right_plus=239	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.41	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=3	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63
JC	1813	.	3	2032	-1	6	1	1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=3__2032__-1__6__1__1__0____251__251__0__0	max_left=248	max_left_minus=236	max_left_plus=248	max_min_left=109	max_min_left_minus=109	max_min_left_plus=0	max_min_right=122	max_min_right_minus=119	max_min_right_plus=122	max_pos_hash_score=430	max_right=130	max_right_minus=130	max_right_plus=122	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.55	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=49
JC	1814	.	4	454	-1	5	438	-1	-1	alignment_overlap=-1	coverage_minus=35	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=4__454__-1__5__438__-1__-1__A__251__251__0__0	max_left=247	max_left_minus=231	max_left_plus=247	max_min_left=112	max_min_left_minus=112	max_min_left_plus=96	max_min_right=115	max_min_right_minus=115	max_min_right_plus=107	max_pos_hash_score=428	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=1.14	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75	unique_read_sequence=A
UN	1815	.	1	31302	31302
UN	1816	.	1	124261	129348
UN	1817	.	1	151439	151453
UN	1818	.	1	157413	157415
UN	1819	.	1	157417	157417
UN	1820	.	1	157420	158233
UN	1821	.	1	158239	158239
UN	1822	.	1	222312	227171
UN	1823	.	1	291558	291647
UN	1824	.	1	392669	392725
UN	1825	.	1	392792	392792
UN	1826	.	1	392794	392794
UN	1827	.	1	392800	392800
UN	1828	.	1	392803	392803
UN	1829	.	1	392805	392806
UN	1830	.	1	394216	394219
UN	1831	.	1	394231	394231
UN	1832	.	1	394789	394817
UN	1833	.	1	394819	394819
UN	1834	.	1	394822	394822
UN	1835	.	1	394824	394824
UN	1836	.	1	395701	395899
UN	1837	.	1	395901	396059
UN	1838	.	1	398265	398266
UN	1839	.	1	398275	398285
UN	1840	.	1	421394	421457
UN	1841	.	1	550340	550340
UN	1842	.	1	550344	550345
UN	1843	.	1	681851	682572
UN	1844	.	1	755534	755554
UN	1845	.	1	907479	907632
UN	1846	.	1	939416	942610
UN	1847	.	1	942919	944872
UN	1848	.	1	1050748	1051509
UN	1849	.	1	1051512	1051512
UN	1850	.	1	1088942	1090843
UN	1851	.	1	1167925	1168655
UN	1852	.	1	1263600	1264320
UN	1853	.	1	1356177	1356337
UN	1854	.	1	1365616	1365903
UN	1855	.	1	1373171	1378350
UN	1856	.	1	1379260	1379264
UN	1857	.	1	1380712	1380953
UN	1858	.	1	1389765	1390438
UN	1859	.	1	1456219	1456258
UN	1860	.	1	1497215	1497987
UN	1861	.	1	1685572	1685598
UN	1862	.	1	1685600	1685600
UN	1863	.	1	1685612	1685612
UN	1864	.	1	1685615	1685615
UN	1865	.	1	1685617	1685617
UN	1866	.	1	1685629	1685629
UN	1867	.	1	1685665	1685687
UN	1868	.	1	1720688	1720696
UN	1869	.	1	1720698	1720698
UN	1870	.	1	1720700	1720700
UN	1871	.	1	1720706	1720706
UN	1872	.	1	1720709	1720709
UN	1873	.	1	1720715	1720715
UN	1874	.	1	1720718	1720718
UN	1875	.	1	1723309	1723344
UN	1876	.	1	1759178	1764480
UN	1877	.	1	1764482	1764482
UN	1878	.	1	1786377	1786406
UN	1879	.	1	1965734	1965801
UN	1880	.	1	2013763	2013777
UN	1881	.	1	2119187	2119534
UN	1882	.	3	9	1619
UN	1883	.	5	1	54
UN	1884	.	5	436	439