| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,456,085 | 2 bp→TG | intergenic (‑224/‑187) | unknown ← / → unknown | hypothetical protein/ParA‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,456,085 | 0 | C | T | 100.0% | 89.4 / NA | 28 | intergenic (‑224/‑188) | unknown/unknown | hypothetical protein/ParA‑like protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/17); total (11/17) | |||||||||||
| * | 1 | 1,456,086 | 0 | T | G | 100.0% | 95.5 / NA | 28 | intergenic (‑225/‑187) | unknown/unknown | hypothetical protein/ParA‑like protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (11/17); total (11/17) | |||||||||||
TATTTAAGCTCATAATAATTTCCTCGCTAAAAAGTTAGTCATAATCATAGATAAAACCGACAACAATAGCAACTTATTAACATAAATATGCTAATAAGATTAAACACATAAAAATAAATATGTTTTTATGTGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGTTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTCTGTACATAACTCATATCCCAGCAAGGAGTACAAATTATGAATATTCATCATATCATTATCTCTATTCTTATCGCAAGACAA‑‑‑‑‑‑‑‑ACCGGTACATATCCCGGCAATGAAAGGTAAAGAATTTGCCGAATTCATGTCATTGTTGCATATTGCGTTAACTCAATCT > 1/1455849‑1456245 || tATTTAGGCTCATAATAATTTCCTCGCTAAAAAGTTAGTCATAATCATAGATAAAACCGACAACAATAGCAACTTATTAACATAAATATGCTAATAAGATTAAGCATATAAAAACAAATATGTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACttat > 1:592425/1‑248 (MQ=255) tCCTCGCTAAAAAGTTAGTCATAATCATAGATAAAACCGACAACAATAGCAACTTATTAACATAAATATGCTAATAAGATTAAGCATATAAAAACAAATATGTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCGCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACaaa < 1:434772/251‑1 (MQ=255) cTCGCTAAAAAGTTAGTCATAATCATAGATAAAACCGACAACAATAGCAACTTATTAACATAAATATGCTAATAAGATTAAGCATATAAAAACAAATATGTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAAtc < 1:895159/251‑2 (MQ=255) acaacaATAGCAACTTATTAACATAAATATGCTAATAAGATTAAGCATATAAAAACAAATATGTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATc < 1:458486/250‑1 (MQ=255) gATTAAGCATATAAAAACAAATATGTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAAtc < 1:766106/176‑2 (MQ=255) atGTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAA‑‑‑‑‑‑‑‑Actggcagaccggtacac < 1:370051/217‑17 (MQ=255) gTTTTTATGCGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGc < 1:893741/190‑1 (MQ=255) tatttattGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattac < 1:895597/251‑15 (MQ=255) tttattGATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTAtctc > 1:447812/1‑151 (MQ=255) gATTTATGTTTTTATGCTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattacagtcttaa > 1:73272/1‑229 (MQ=255) gtttttatgctttGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTc < 1:107181/143‑1 (MQ=255) tttttatgctttGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATgcaacttaatca < 1:525371/125‑12 (MQ=255) tttatgctttGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACaa > 1:295821/1‑106 (MQ=255) tttatgctttGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattac < 1:629046/233‑15 (MQ=255) tttatgctttGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattac > 1:516886/1‑219 (MQ=255) gctttGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattac < 1:692768/226‑15 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATTAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattacag < 1:425724/225‑17 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAAtc > 1:631671/1‑98 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTc < 1:866471/130‑1 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGc > 1:439246/1‑137 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgc > 1:575799/1‑209 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAA‑‑‑‑‑‑‑‑Actggcagaccggtacac > 1:115953/1‑146 (MQ=255) gTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAA‑‑‑‑‑‑‑‑Actggc < 1:742575/150‑5 (MQ=255) ttCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattac < 1:847240/214‑15 (MQ=255) ctctGATAGCGGTCACTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattac > 1:810541/1‑173 (MQ=255) cTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgcattgcattacag > 1:736034/1‑158 (MQ=255) cTATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgc < 1:118169/162‑5 (MQ=255) tATCAGAGGTTGGCACATAACTTATATCCCAGCAAGGAGTACAAATCATGCAACTTAATCATATCATTATCTCTCTTCTTATCGCAAGCCAAACTGGCAGACCGGTACACATTCCGGCGATGAAAGGCAGGGAATTTGCCGAATTCATGTCAttgttacgc < 1:726804/161‑5 (MQ=255) || TATTTAAGCTCATAATAATTTCCTCGCTAAAAAGTTAGTCATAATCATAGATAAAACCGACAACAATAGCAACTTATTAACATAAATATGCTAATAAGATTAAACACATAAAAATAAATATGTTTTTATGTGTAAATATTTATCAATATTTATTGATTTATGTTTTTATGTTTTGTATAATCTTTCTCGTGGTAACACAAAAAAAGAAACCTCTGATAGCGGTCACTATCAGAGGTCTGTACATAACTCATATCCCAGCAAGGAGTACAAATTATGAATATTCATCATATCATTATCTCTATTCTTATCGCAAGACAA‑‑‑‑‑‑‑‑ACCGGTACATATCCCGGCAATGAAAGGTAAAGAATTTGCCGAATTCATGTCATTGTTGCATATTGCGTTAACTCAATCT > 1/1455849‑1456245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |