| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,342,509 | T→C | T147T (ACA→ACG) | unknown ← | Diaminopimelate epimerase (EC 5.1.1.7) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,342,509 | 0 | T | C | 100.0% | 283.4 / NA | 83 | T147T (ACA→ACG) | unknown | Diaminopimelate epimerase (EC 5.1.1.7) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (50/33); total (50/33) | |||||||||||
AATACCCACCGCCACCGCCGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACTGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCGCTGCCGTC > 1/1342263‑1342754 | aataCCCACCGCCACCGCCGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGttt < 1:238481/251‑1 (MQ=255) ataCCCACCGCCACCGCCGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTg > 1:655193/1‑251 (MQ=255) ataCCCACCGCCACCGCCGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTg > 1:177031/1‑251 (MQ=255) ccaccgccaccgCCGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGAtt < 1:827916/251‑1 (MQ=255) cccgccaccgccGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTc < 1:299802/250‑1 (MQ=255) aGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAt > 1:730957/1‑251 (MQ=255) cgccgcTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAtt < 1:116144/250‑1 (MQ=255) cgccgcTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAt < 1:839184/249‑1 (MQ=255) ccgcTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAtctg > 1:194031/1‑247 (MQ=255) ccGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGGTTGGATTTCCGTACGCAGAATATAATTTTTCTCaaa > 1:434816/1‑251 (MQ=255) ggTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGc < 1:751545/220‑1 (MQ=255) gTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAt > 1:46382/1‑213 (MQ=255) cgcgTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGG‑AAACGGGAATTTT‑TTTGGCTcccca > 1:434000/1‑249 (MQ=255) tAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATc < 1:871782/250‑1 (MQ=255) aGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATTCTCCACCTGCACCACGCAAAGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGG‑AAAA‑GGAAATTTAtttctgttttctataaa > 1:432494/1‑236 (MQ=255) gTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGCGGGA‑AAAC‑GGATtttttttggccccccaaacggg > 1:327599/1‑233 (MQ=255) ttGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAA‑GGGAATTTATTCGGCTCCCAAAACGGttt > 1:289566/1‑250 (MQ=255) aCGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGTAAAAC‑GAAATTTT‑TTCTGCTccccaaacgggtttcccctgtttt > 1:551934/1‑230 (MQ=255) aCGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTc < 1:146192/250‑1 (MQ=255) aTTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGGATTTTTTTTGGCTccccaaaccgtttgcccctgtttacc > 1:310377/1‑227 (MQ=255) aTTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAAtttt < 1:624558/216‑1 (MQ=255) cccaccTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCAc < 1:671619/250‑1 (MQ=255) gCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAA‑GGAATTTTTTTTCGCTCCCAAATCGGTTCGCCCCTGTTTACCCCCAccgtacc > 1:473861/1‑244 (MQ=255) gCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGG‑AAAA‑GGGAATTTATTCGGCTCCCCAAACGGTTCCCCCCTGtttccccccaccttacc > 1:57886/1‑235 (MQ=255) gCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGG‑AAAA‑GGAATTTTTTTTGGCTCCCCAAACGGTTCGCCCCTGTTCAcccc > 1:627548/1‑240 (MQ=255) cATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGa > 1:580864/1‑149 (MQ=255) cATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTc < 1:899050/153‑1 (MQ=255) aTTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGACACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACgg < 1:153352/251‑1 (MQ=255) cACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAt < 1:377411/155‑1 (MQ=255) tCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCAt < 1:722499/251‑1 (MQ=255) tGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGG‑AAAA‑GGGAATTTATTCCGCTCCCCAAAAGGTTCTCCCCCGTTTACCCCCACGGTACCATCTTC‑TTTTACCGTCAGCAACATTTTTCCGTTTTTCGt > 1:103440/1‑251 (MQ=255) ttCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGTAAAAG‑GGAATTTT‑TTCGGCTCCCCAAACGGTTCGCCCCTGTTTACCCCCCCGTTACCATCTTC‑TTTCACCGGCAGCAGCATTTTTCCGTTTTTCGGGCttt > 1:173223/1‑250 (MQ=255) aaTAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGc < 1:756257/251‑1 (MQ=255) aTAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCg < 1:549832/251‑1 (MQ=255) ggACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGTAAAAG‑GGAATTTT‑TTCGGCTCCCAAAACGGGTCTCCCATGTTTACCCCCACGTTACCCTCTTT‑TTTTACGGTCAGCAGCATTTTGCCCGTTTGCGTGCTTACGGCGATgg > 1:158792/1‑249 (MQ=255) aGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAttt > 1:274631/1‑114 (MQ=255) gttCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTTCGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTAACATCTTCTTTTCCCGG‑CCGCAGCATTTTTCCGTTTTTCGTGCtttccgcggttgtttttttattt > 1:849345/1‑230 (MQ=255) gttCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGc < 1:465211/228‑1 (MQ=255) gttCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGG‑AAAA‑GGAATTTTTTTTGGCTCCCAAAACTGTTCGCCCATGTTTACCCCCCCGTTACCCTCTTC‑TTTCAACGTCAGCAGCATTTTGCCGTTTTTCGTGCTTTCGGCGCTGTC‑tttttttttt > 1:781099/1‑247 (MQ=255) caTTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCa < 1:485309/162‑1 (MQ=255) aTTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGc < 1:372439/251‑1 (MQ=255) gTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCCGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTTCCCTTTTGCGTGCTTACGGCg > 1:26460/1‑222 (MQ=255) tttGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGc < 1:562815/251‑1 (MQ=255) tcctccACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCCCACGTTACCATCTTC‑TTTCACCGTCAGCAGCATTTTGCCGTTTTTCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTTAGCCTTTGAGCGTCACGaa > 1:820226/1‑251 (MQ=255) tcctccACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAA‑GGAATTTTATTCGGCTCCCAAATCGGGTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGGAATGTC‑TTTTTTAt > 1:245067/1‑226 (MQ=255) cctccACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCCTGTTCACCCGCACGTTTCCATCTTC‑TTTTACCGCTAGCCGCATTTTGACGGTTTGCTTGGTTACGGCGATGTCTTTTTTTTTTGGTT‑AGCCTTTTTGCGTCACgtaa > 1:703598/1‑248 (MQ=255) cctccACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGaaa > 1:554669/1‑251 (MQ=255) cctccACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGaaa < 1:429680/251‑1 (MQ=255) ccACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGGTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACgg > 1:624954/1‑251 (MQ=255) cACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAAt > 1:84397/1‑80 (MQ=255) cACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCAt < 1:630065/161‑1 (MQ=255) cACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCCCGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACggg > 1:440477/1‑251 (MQ=255) cACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGcc < 1:846444/231‑1 (MQ=255) caccacGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAAc < 1:843847/251‑1 (MQ=255) caccacGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAAc < 1:7135/251‑1 (MQ=255) cAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTTGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTTTTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTg > 1:643289/1‑250 (MQ=255) gCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCAt < 1:559663/159‑1 (MQ=255) gCCCATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGGGCGCCGTTGCca > 1:696359/1‑250 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAc > 1:748968/1‑81 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCagcagc < 1:158722/156‑1 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGc < 1:898169/182‑1 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGtt > 1:870751/1‑201 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCcaca > 1:565804/1‑251 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGGTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGGTGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCcaca > 1:727593/1‑251 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAAACGGTTCTCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCCTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCcaca > 1:146801/1‑251 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAA‑GGGATTTTTTTTGGCTCCCCAATCGGTTTGCCCATGTTCACCCGCCCGTTACCATTTTC‑TTTTACGGTCAGCAGCATTTTGCCGTTTTGCGGGCTTTCGGCGACGTC‑TTTTTTATTGGTTAAGGCTTTTAGGGTCACGAAACGGGCGAAACAGCGGGCGCCGTTGCcaca > 1:336546/1‑251 (MQ=255) cccATAGATACCGCGCTGCACAGCACCGTTTAGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAAt > 1:799968/1‑86 (MQ=255) cATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGGATTTTATTCCGCTCCCCAATCGGTTCGCCCACGTTCACCCGCACGTTAACATCTTC‑TTTCCCGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGCTGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCCAAACAGCGGGCGCCGTTGCCACAtt > 1:131805/1‑251 (MQ=255) cATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTcagcag < 1:738395/153‑1 (MQ=255) cATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTTCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACAtt > 1:361704/1‑251 (MQ=255) cATAGATACCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCtt > 1:588760/1‑206 (MQ=255) aCCGCGCTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCAc < 1:756091/251‑1 (MQ=255) gcgcTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACtt > 1:230829/1‑250 (MQ=255) gcgcTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCC‑TTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCg > 1:613505/1‑251 (MQ=255) cTGCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACAt < 1:752452/237‑1 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCTGCGCCCAAATCGGTTCGCCCCTGTTTACCCACACGTTACCATCTTT‑TTTCACGGGCAGCAGCATTTTGCCCTTTTTCGTGCTTACGGCGATGTC‑TTTTTTTTTGGTTAAGCCTTTGAGCGTCCCGAAACGGGCGAAACAACGTGCGCCGTTGCCCCATTGCGCCACTTCGccg > 1:71895/1‑248 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCCTGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCGCTg > 1:279399/1‑250 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAg < 1:716572/217‑1 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCGCTg > 1:808876/1‑250 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCGCTg > 1:279636/1‑250 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGGTTTTCGTGCTTACGGCGATGTC‑TTTTTTTTTGGTTAAGCCTTTGAGCGTCACGAAACGGGCCAAACAGCGTGCGCCGGTGCCACATTGCGCCACTTCGCTg > 1:20035/1‑250 (MQ=255) gCACAGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCCCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCCCGGTCCGCAGCATTTTTCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGCGCGCCGGTGCCCCATTGCGCCCCTTCGCTg > 1:515628/1‑250 (MQ=255) cacaGCACCGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTT‑‑‑CCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCGCTGCCGTc < 1:99560/251‑1 (MQ=255) | AATACCCACCGCCACCGCCGCACAAGCGCCGCTACCGCAAGCCTGGGTTTCGCCGGTACCGCGTTCGTATACGCGTAGTTTGATGTGATGACGATTCACCACCTGCATAAAGCCCGCATTCACCCGTTCCGGAAAACGTTCATGATTTTCCAATAGCGGACCGAGTTGTTCCACATTGGCGGTTTGAATATCCTCCACCTGCACCACGCAATGCGGATTGCCCATAGATACCGCGCTGCACAGCACTGTTTGGATTTCCGTACGCAGAATATAATTTTTCTCAAATTTATTGGC‑GGT‑AAAC‑GGAATTTTATTCGGCTCCCAAATCGGTTCGCCCATGTTCACCCGCACGTTACCATCTTC‑TTTCACGGTCAGCAGCATTTTGCCGTTTTGCGTGCTTACGGCGATGTC‑TTTTTTATTGGTTAAGCCTTTGAGCGTCACGAAACGGGCAAAACAGCGTGCGCCGTTGCCACATTGCGCCACTTCGCTGCCGTC > 1/1342263‑1342754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |