| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,454,535 | Δ12 bp | intergenic (+1/‑34) | unknown → / → unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,454,534 | 0 | A | . | 100.0% | 93.4 / NA | 22 | coding (1737/1737 nt) | unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,535 | 0 | G | . | 100.0% | 93.4 / NA | 22 | intergenic (+1/‑45) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,536 | 0 | T | . | 100.0% | 93.4 / NA | 22 | intergenic (+2/‑44) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,537 | 0 | C | . | 100.0% | 93.4 / NA | 22 | intergenic (+3/‑43) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,538 | 0 | A | . | 100.0% | 93.4 / NA | 22 | intergenic (+4/‑42) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,539 | 0 | G | . | 100.0% | 93.4 / NA | 22 | intergenic (+5/‑41) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,540 | 0 | T | . | 100.0% | 93.4 / NA | 22 | intergenic (+6/‑40) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,541 | 0 | T | . | 100.0% | 93.4 / NA | 22 | intergenic (+7/‑39) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,542 | 0 | C | . | 100.0% | 93.4 / NA | 22 | intergenic (+8/‑38) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,543 | 0 | T | . | 100.0% | 93.4 / NA | 22 | intergenic (+9/‑37) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,544 | 0 | A | . | 100.0% | 93.4 / NA | 22 | intergenic (+10/‑36) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (9/13); total (9/13) | |||||||||||
| * | 1 | 1,454,545 | 0 | T | . | 100.0% | 93.4 / NA | 22 | intergenic (+11/‑35) | unknown/unknown | Coupling protein VirD4, ATPase required for T‑DNA transfer/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/13); total (9/13) | |||||||||||
CGACCGTTGCTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGTAAGCCAATACTGTGTAATAAAGCGGTTTACTATAACGACCCTTATTTTATTGACAAATTGAAAGCGGTTTCCCCGCAATTACGCGCACTAGGCAAGAAATTACCGACTAAAGCGCAACTGGAAAAAGCCATGTTCAGTGGTGAGCTCTCCGCCCAATCCATTTAAGTCAGTTCTATATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAATTTTTACTTATGAATACGTTAATCTCTGCTTGTTTTTTAAGCGCGTGCAACTCGTCACCGCCGGAACCGCCACAAATTAATGAAGAC > 1/1454298‑1454675 |||||||||||| cGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTaatccacaaaaactg < 1:47410/250‑14 (MQ=255) acTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTaatccacaaaaactgtgaataac > 1:134825/2‑229 (MQ=255) cTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTaatccacaaaaactgtgaataacca < 1:244723/251‑24 (MQ=255) tgATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtacc < 1:434082/250‑4 (MQ=255) tgATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtacc < 1:403990/250‑4 (MQ=255) aaataacagcaaaccgattatatgtAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATg < 1:136376/207‑1 (MQ=255) caaaccgattatatgtAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAg < 1:41541/236‑1 (MQ=255) ccgattatatgtAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtac > 1:636159/10‑227 (MQ=255) atgtAATAAGGCAGTGTATTACAACGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGt > 1:412919/2‑251 (MQ=255) taataaggcagtgtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCa > 1:565257/20‑250 (MQ=255) taataaggcagtgtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCa > 1:165664/20‑250 (MQ=255) aataaggcagtgtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCAcc < 1:646724/233‑1 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtacc < 1:614625/200‑4 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtac > 1:669767/8‑204 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtac < 1:745828/199‑3 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAg > 1:466134/8‑222 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCAc < 1:504059/232‑1 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCACCACCAGAAc > 1:643527/8‑248 (MQ=255) gtattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCACCACCAGAACCg > 1:659897/8‑250 (MQ=255) tattacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCACCACCAGAACCGc < 1:817973/244‑1 (MQ=255) attacaaCGATCCTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGtt < 1:467659/194‑1 (MQ=255) atccTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAAtacc < 1:777520/194‑4 (MQ=255) tccTTATTTTATAGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAGCGCGTGCAGCTCGTCACCACCAGAACCGCCGCAAAttgata > 1:274096/2‑247 (MQ=255) tttttataGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATCCCTGTTTGTTTTTTAAGCGCGTGCAGCTCGTCACCACCAGAACCGCCGCAAATTGATAAAGAc < 1:497178/250‑1 (MQ=255) tttataGACAAACTCAAAGCGGTATCTCCGCAATTGCGAGCATTAGGTAAAAAATTACCGACAAAAGAACAATTGGAAAAAGCTATGTTCAGTGGCGAGCTGTCAGTCCAATCAATTTA‑‑‑‑‑‑‑‑‑‑‑‑ATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAAATTTTACTTATGAATATGTTAATACCTGTTTGCTTTTTAAg < 1:233148/203‑1 (MQ=255) |||||||||||| CGACCGTTGCTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGTAAGCCAATACTGTGTAATAAAGCGGTTTACTATAACGACCCTTATTTTATTGACAAATTGAAAGCGGTTTCCCCGCAATTACGCGCACTAGGCAAGAAATTACCGACTAAAGCGCAACTGGAAAAAGCCATGTTCAGTGGTGAGCTCTCCGCCCAATCCATTTAAGTCAGTTCTATATCCACAAAAACTGTGAATAACCAGGAGGATAATATGAAAAAATTTTTACTTATGAATACGTTAATCTCTGCTTGTTTTTTAAGCGCGTGCAACTCGTCACCGCCGGAACCGCCACAAATTAATGAAGAC > 1/1454298‑1454675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |