| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,810,912 | C→T | C110C (TGC→TGT) | unknown → | Phosphatidylglycerophosphatase A (EC 3.1.3.27) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,810,912 | 0 | C | T | 94.5% | 205.1 / NA | 73 | C110C (TGC→TGT) | unknown | Phosphatidylglycerophosphatase A (EC 3.1.3.27) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (38/31); minor base G (4/0); total (42/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTCCCGCGCCCGGCACTTGGGGCAGTTTGGTCGGCGTGATTTTAGGCGCGTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGCGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTATGTGAGC > 1/1810670‑1811151 | cGTCCCGCGCCCGGCACTTGGGGCAGTTTGGTCGGCGTGATTTTAGGCGCGTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGc < 1:641531/251‑1 (MQ=255) cgcCCGGCACTTGGGGCAGTTTGGTCGGCGTGATTTTAGGCGCGTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTg < 1:527265/251‑1 (MQ=255) cGGCACTTGGGGCAGTTTGGTCGGCGTGATTTTAGGCGCGTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACtt < 1:879449/251‑1 (MQ=255) ttAGGCGCGTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATcc < 1:563812/251‑1 (MQ=255) gcgTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGTTTTTTGCCGTGCCGCC‑AGTGTCCTTATTTTTGGGTGCCATCGCTTTTGTGGCTTTTCCTCTGTTTTGTTTTTTTAAAA‑CTtattctattc > 1:393894/1‑250 (MQ=255) cgTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGGTATTAGCCCTGCCGCA‑AGTGTGATTATTTTGGGGTGGCATCGCTTTCGTGGCTTTTCGTCTG‑TTTGATATTTTTAAACCTTATCCTTTTCg > 1:349038/1‑250 (MQ=255) ttATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCt < 1:345555/250‑1 (MQ=255) aTTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGGGGCATCGCTTTCGGGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTAtt > 1:64038/1‑251 (MQ=255) aTTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGGGTCATTATTATTGTGTGCCATCGCCTTCGTGACTTTCCGTCTG‑TTTGATATTTTTAAAcc > 1:664335/1‑234 (MQ=255) gcCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCC‑AGTGTCATTATTATGGTGTGCCATCGCTTTTGTGACTTTCCGTCTG‑TTTTATATTTTTAAAc > 1:538055/1‑227 (MQ=255) aaaaCATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTTTGTTATTACCCGTGCCGCA‑AGTGGCCTTATTTTGGTGTGCCCTCGCTTTTGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTTTCCTATTCGCTCTTTTTACGAAAAACTCACCaaagg > 1:395479/1‑248 (MQ=255) cATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGTTATTAACCGTGCCGCA‑AGGGTCATTATTATGGGGTGCCCTCGCTTTCGTGACTTTTCGTCTG‑TTTGATATTTTTAAACCCTATCCTATTTGCTATTTTGACGAAAAACTCACCAACGGCttt > 1:512727/1‑251 (MQ=255) tttGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑tgg < 1:118515/251‑1 (MQ=255) tttGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑tgg < 1:394649/251‑1 (MQ=255) cACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTTTTAGCCGTGCCGCA‑AGTGTCATTATTTTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTTAAACCTTTTCCTATTCGCTATTTTTACGAAAAAATCACCAACGGCTTTGGCATTA‑TGGTGGGCGat > 1:529991/1‑251 (MQ=255) tcATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGGGCTATTTGCCGCGCCGCACAG‑GTCATTTTTATGGGGTGCCATTACTTTTCTGACCTTCCGTCTG‑GTTGGTTTTTTTAAACCTTATCCTATTCGCCATTTTGAAGCAAAACTTACCAACCGCTTTTGGATTATTGGT‑GACGATATTTTTGCAGCAgggtta > 1:666364/2‑247 (MQ=255) gCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTc < 1:618507/153‑1 (MQ=255) tttGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGc < 1:529548/251‑1 (MQ=255) tGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCAt < 1:824149/251‑1 (MQ=255) tGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGGGCCGCA‑AGTGGCATTATTATGGGGGGCCATCGCTTTCGTGACTTTTCGTCTG‑TTTGATATTTTTAAAACTTATCCTATTCGCTATTTTTACGAAAAACTCACCAACGGCTTTTGCATTA‑TGGTGGACGATATTTTTGCAGCAGGCTACAGCAt > 1:666630/1‑251 (MQ=255) ggCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGGGCCGCA‑AGGGTCATTATTATGGGGTGCCATCGCTTTTGTGGCTTTTCGTCTG‑TTTGATATTTTTAAAACTTATcc > 1:167362/1‑172 (MQ=255) cGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGTTATTAGCCGGGCCGCA‑AGTGTCATTATTATGGGGTGCCATCGCTTTCGTGACTTTCCGGCTG‑TTTGATATTTTTAAACCTTATCCTATTTGCTATTTTGACGAAAAAATCACCAAAGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTAtttt > 1:548439/1‑251 (MQ=255) cGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATcc < 1:245623/161‑1 (MQ=255) tcAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTa < 1:158261/250‑1 (MQ=255) aGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAAACTTTTCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTT‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTTTTTTTTTAtt > 1:302980/1‑251 (MQ=255) gTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTAttttt < 1:143588/245‑1 (MQ=255) gTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGGGCCGCA‑AGGGGCATTATTATGGGGTGCCATCGCTTTTGTGACTTTCCGTCTG‑TTTGATATTTTTAAAACTTATCCTATTCGCTATTTTTACGAAAAAATCACCAACGGCTTTTGCATTA‑TGGTGGACGATATTTTTGCAGCAGGCTACAGCATCGTTGTTATTTTTGttttt > 1:566989/1‑247 (MQ=255) tGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTTTCCGGGCCGCA‑AGGGTCATTATTTTTGGGGGCCCTCGCTTTCGTGACTTTTCGTCTG‑GTTGATATTTTTAAACCCTATTCTATTCGCTATTTTTACGAAAAACTCACCCACGGCTTTTGCATTT‑TGGGGGACGATATTTTGGCAGCAGGCTACAGCATCGTTTTTATTTTTTTTTTAGca > 1:760366/1‑250 (MQ=255) tGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGGGCCGCC‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTTCGTCTG‑TTTTATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGGTTTTGGATTA‑TGGGGGACGATATTTTGGCAGCAGGGTACAGCATCGGTGTTATTTTTTTAtttgga > 1:522860/1‑246 (MQ=255) aCATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTTTGTTATTAGCCGGGCCGCA‑AGCGTCCTTTTTATGGTGTGCCATTGCCTTTGTGTCTTTCCGGCCG‑TTTGATATTTTAAAACCTTATCCTTTTTTCTATTTTGACGGAAAAATCACCAACGGCTTTTGCATTT‑TGGGGGACGCTATTTTTGGAGCATGCTACAGCAt > 1:383726/1‑226 (MQ=255) ggCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCCTCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTAt > 1:133074/1‑251 (MQ=255) ggCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGGGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAAACTTATCCTATTCGCTATTTTTACGAAAAACTCACCAACGGCTTTTGCATTA‑TGGTGGACGATATTTTTGCAGCAGGCTACAGCATCGTTGTTTTTTTTGTATTAGCACATTTTAt > 1:796969/1‑251 (MQ=255) cGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATc < 1:466692/250‑1 (MQ=255) gTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCt < 1:702928/148‑1 (MQ=255) gATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTc < 1:186186/139‑1 (MQ=255) gATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGcac < 1:868187/235‑1 (MQ=255) tCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTATTCCTTTTGTTATTAACCGGGGCGCC‑AGGGTTATTATTATGGGGTGCCATCGCTTTTGTGACTTTCCGGCTG‑TTTGGTATTTTAAAACCTTTTCCTATTTCCTATTTTTTCGGAAAAATCACCCACGGGTTTTGGATTA‑TGGGGGACGATATTTTTGCAGCAGGCTACAGCAt > 1:443057/1‑210 (MQ=255) cGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTTCTTGTGTTATTAGCCGTGCCGCC‑AGTGTCATTATTTTGGGGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTTAAACCTTATCCTATTCGCTATTTTTACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTTTATTAGCACATTTTATCTAGGc > 1:39232/1‑243 (MQ=255) gcaTTGTGTGGGATGAAATCGTGGCGGTTTTTCTTTTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTTTGGTGTGCCCTCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTTACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTTGCAGCAGGCTACAGCATCGTTGTTTTTTTTGTATTAGCACATTTTATc > 1:229806/1‑233 (MQ=255) gcaTTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCC‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTTAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TAGTGGACGATATTTTTGCAGCAGGCTACAGCATCGTTGTTATTTTTTTATTAGCACATTTTTTCTAGGCAATCAGATGttta > 1:424266/1‑249 (MQ=255) aTTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACGTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAAt < 1:264712/251‑1 (MQ=255) aTTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAAt < 1:818830/251‑1 (MQ=255) aTTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGGTATTTGCCGTGCCGCA‑AGGGTCCTTTTTATGGGGGGGCATTGCTTTTGTGTCTTTCCGTCTG‑TTTGATATTTTAAAACCCTATCCTTTTTGCTATTTTGACGAAAAACTTACCAACGGCGTTGGCATTA‑TGGTGGACGATATTTTTGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTTTTTAGGCCATTAGATGTTTAAt > 1:131961/1‑251 (MQ=255) gtgtgGGATGAAATCGTGGCGGTTTTTCTTGTTTTTTTTGCCGTGCCGCC‑AGTGTCATTTTTTTGGGGTGCCCTCGCTTTCGTGACCTTCCGTCTG‑TTTTATATTTTTAAAACTTATCCTTTTCGCTATTTTTACGAAAAACTTACCAACAGGTTTTGCATTT‑TGGTGGACGATATTTTTGCAGCAGGCTCAAGCCTCGTTGTTTTTTTTTTATTTGCACATTTTTTCTCGGCAATCCGATGTTAAAtttt > 1:1451/1‑250 (MQ=255) gtgtgGGATGAAATCGTGGCGGTTTTTCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTTTTATGGGGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TTGTGGACGATATTTTTGCAGCCGGCTACAGCCTCGTTGTTTTTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAAtttt > 1:764342/1‑250 (MQ=255) gtgtgGGATGAAATCGTGGCGGTTTTCCTTGTGGTATTAGCCGTGCCGCC‑AGTGGCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGGCGATATTTTTGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTTTCTAGGCAATCAGATGTTAAAtttt > 1:380050/1‑250 (MQ=255) tgGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATg < 1:54281/251‑1 (MQ=255) ggATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTTGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAAATCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGGTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATgtt > 1:163364/1‑251 (MQ=255) ggATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑tgg < 1:324838/161‑1 (MQ=255) ggATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATgt < 1:269028/250‑1 (MQ=255) aaaTCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATgttcgtt < 1:616226/250‑1 (MQ=255) ccTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTg > 1:861330/1‑249 (MQ=255) gtTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGgc < 1:687502/150‑1 (MQ=255) gtTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTaaa < 1:48386/215‑1 (MQ=255) gtTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTccc > 1:500230/1‑250 (MQ=255) ttattaGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATc < 1:751169/195‑1 (MQ=255) ttattaGCCGTGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTcccc < 1:824052/250‑1 (MQ=255) tGCCGCA‑AGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGAtt > 1:834879/1‑251 (MQ=255) aGTGTCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTa > 1:678072/1‑251 (MQ=255) gtgtCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTg > 1:827706/1‑224 (MQ=255) tCATTATTATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGgc > 1:743163/1‑128 (MQ=255) attattATGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGt < 1:139875/187‑1 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGgc > 1:358158/1‑125 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGc < 1:256317/138‑1 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGc < 1:298535/138‑1 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCgttg > 1:636077/1‑145 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGcac > 1:15622/1‑163 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTATGTGAg > 1:28708/1‑250 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTATGTGAg > 1:816417/1‑250 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTATGTGAg > 1:669213/1‑250 (MQ=255) ttattaTGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTATGTGAGc < 1:706491/251‑1 (MQ=255) tattatGGTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTgg > 1:592385/1‑123 (MQ=255) ggTGTGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATg > 1:79880/1‑178 (MQ=255) | CGTCCCGCGCCCGGCACTTGGGGCAGTTTGGTCGGCGTGATTTTAGGCGCGTTATTGCTGCCGGTACTCGGCGCAAAAACATTTTTTATTTTGACCGCACTTTGCTTCTTCATCGGCATTTGGCTATGCGAACGCACCAGTCATGACATGGGCGTGCACGATCACGGCAGCATTGTGTGGGATGAAATCGTGGCGGTTTTCCTTGTGTTATTAGCCGTGCCGCA‑AGTGTCATTATTATGGTGCGCCATCGCTTTCGTGACTTTCCGTCTG‑TTTGATATTTTAAAACCTTATCCTATTCGCTATTTTGACGAAAAACTCACCAACGGCTTTGGCATTA‑TGGTGGACGATATTTTGGCAGCAGGCTACAGCATCGTTGTTATTTTTGTATTAGCACATTTTATCTAGGCAATCAGATGTTAAATTTAATGTTCGTTCATTTGGTGGGATTGCTTTCCCCCGGACCGGATTTTTTCTATGTGAGC > 1/1810670‑1811151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |