breseq  version 0.38.1  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA Xen14_126 1,873 C→T P29P (CCC→CCT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,876 T→A G30G (GGT→GGA)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,885 G→T V33V (GTG→GTT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,888 C→A A34A (GCC→GCA)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,897 T→A A37A (GCT→GCA)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,900 A→T R38R (CGA→CGT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,942 A→G R52R (AGA→AGG)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,945 T→C L53L (CTT→CTC)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,951 A→G Q55Q (CAA→CAG)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,964 A→G I60V (ATA→GTT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,966 A→T I60V (ATA→GTT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,979 T→C S65P (TCG→CCG)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,023 G→A V79V (GTG→GTA)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,026 G→A E80E (GAG→GAA)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,043 C→A P86Q (CCG→CAG)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,053 G→T P89P (CCG→CCT)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,059 T→G A91A (GCT→GCG)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,062 T→C A92A (GCT→GCC)  Xen14_04726 → hypothetical protein
JC Xen14_143 77 +GCTCTGC coding (230/279 nt) Xen14_04759 ← hypothetical protein
RA Xen14_143 136 G→A S57S (AGC→AGT)  Xen14_04759 ← hypothetical protein
RA Xen14_143 155 G→A A51V (GCG→GTG)  Xen14_04759 ← hypothetical protein
RA Xen14_143 594 C→T intergenic (‑288/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 630 A→C intergenic (‑324/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 651 T→G intergenic (‑345/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 654 A→C intergenic (‑348/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 696 G→A intergenic (‑390/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 700 C→G intergenic (‑394/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 726 G→A intergenic (‑420/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 742 C→G intergenic (‑436/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 753 C→T intergenic (‑447/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 782 2 bp→GT intergenic (‑476/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 785 T→A intergenic (‑479/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 793 A→G intergenic (‑487/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 807 C→T intergenic (‑501/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 839 C→T intergenic (‑533/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 858 G→A intergenic (‑552/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 879 A→G intergenic (‑573/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 915 C→T intergenic (‑609/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 960 T→C intergenic (‑654/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 967 C→T intergenic (‑661/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 996 G→A intergenic (‑690/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 1,030 A→C intergenic (‑724/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_17 79,736 T→C L178L (CTA→CTG)  Xen14_02064 ← IS4 family transposase ISEc13
RA Xen14_17 79,802 T→G G156G (GGA→GGC)  Xen14_02064 ← IS4 family transposase ISEc13
RA Xen14_17 80,371 G→A intergenic (‑102/–) Xen14_02064 ← / – IS4 family transposase ISEc13/–
RA Xen14_19 57,809 Δ1 bp intergenic (‑425/+56) fimA_2 ← / ← Xen14_02204 Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1
RA Xen14_191 220 2 bp→GA intergenic (–/–) – / – –/–
RA Xen14_191 226 2 bp→GA intergenic (–/–) – / – –/–
RA Xen14_191 229 C→T intergenic (–/–) – / – –/–
RA Xen14_191 251 A→G intergenic (–/–) – / – –/–
RA Xen14_191 268 A→G intergenic (–/–) – / – –/–
RA Xen14_191 275 A→G intergenic (–/–) – / – –/–
RA Xen14_191 292 T→C intergenic (–/–) – / – –/–
RA Xen14_191 310 G→A intergenic (–/–) – / – –/–
RA Xen14_191 334 T→A intergenic (–/–) – / – –/–
RA Xen14_191 358 G→A intergenic (–/–) – / – –/–
RA Xen14_191 370 A→C intergenic (–/–) – / – –/–
RA Xen14_202 78 A→G intergenic (–/–) – / – –/–
RA Xen14_202 105 G→A intergenic (–/–) – / – –/–
RA Xen14_202 109 A→T intergenic (–/–) – / – –/–
RA Xen14_202 126 C→G intergenic (–/–) – / – –/–
RA Xen14_202 134 C→T intergenic (–/–) – / – –/–
RA Xen14_202 140 G→A intergenic (–/–) – / – –/–
RA Xen14_202 191 G→T intergenic (–/–) – / – –/–
RA Xen14_202 244 A→T intergenic (–/–) – / – –/–
RA Xen14_202 259 2 bp→GG intergenic (–/–) – / – –/–
RA Xen14_202 266 2 bp→TC intergenic (–/–) – / – –/–
RA Xen14_202 294 C→A intergenic (–/–) – / – –/–
RA Xen14_202 314 T→A intergenic (–/–) – / – –/–
RA Xen14_202 320 A→G intergenic (–/–) – / – –/–
RA Xen14_202 323 G→A intergenic (–/–) – / – –/–
RA Xen14_202 332 C→T intergenic (–/–) – / – –/–
RA Xen14_202 335 T→A intergenic (–/–) – / – –/–
RA Xen14_202 341 A→G intergenic (–/–) – / – –/–
RA Xen14_202 344 T→C intergenic (–/–) – / – –/–
RA Xen14_38 48,371 G→T A155A (GCC→GCA)  Xen14_03355 ← IS21 family transposase IS100kyp
RA Xen14_65 17,250 G→A intergenic (+111/–) gmd_2 → / – GDP‑mannose 4,6‑dehydratase/–
RA Xen14_83 11,287 T→C intergenic (+24/–) Xen14_04442 → / – hypothetical protein/–
RA Xen14_83 11,302 G→C intergenic (+39/–) Xen14_04442 → / – hypothetical protein/–
RA Xen14_83 11,305 T→C intergenic (+42/–) Xen14_04442 → / – hypothetical protein/–
RA Xen14_83 11,315 T→C intergenic (+52/–) Xen14_04442 → / – hypothetical protein/–

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ Xen14_126 1 177 177 NA [0] [89] 92 –/Xen14_04725 –/hypothetical protein
* * ÷ Xen14_183 1 43 43 NA [0] [49] 111 –/– –/–
* * ÷ Xen14_189 448 453 6 91 [11] [0] NA –/– –/–
* * ÷ Xen14_197 403 433 31 183 [32] [0] NA –/– –/–
* * ÷ Xen14_34 53053 53084 32 119 [33] [0] NA gpr_2/– L‑glyceraldehyde 3‑phosphate reductase/–
* * ÷ Xen14_46 40318 40351 34 63 [62] [0] NA Xen14_03701/– hypothetical protein/–
* * ÷ Xen14_49 1 55 55 NA [0] [50] 153 –/gldA –/Glycerol dehydrogenase
* * ÷ Xen14_58 24541 24572 32 349 [39] [0] NA yjjW/– Putative glycyl‑radical enzyme activating enzyme YjjW/–
* * ÷ Xen14_60 1 31 31 NA [0] [19] 57 –/hisI –/Histidine biosynthesis bifunctional protein HisIE
* * ÷ Xen14_62 1 43 43 NA [0] [16] 47 –/Xen14_04136 –/hypothetical protein
* * ÷ Xen14_67 1 27 27 NA [0] [15] 59 –/gltJ –/Glutamate/aspartate import permease protein GltJ
* * ÷ Xen14_7 136431 136514 84 33 [31] [0] NA zinT/– Metal‑binding protein ZinT/–
* * ÷ Xen14_73 13054 13160 107 70 [68] [0] NA Xen14_04329/– hypothetical protein/–
* * ÷ Xen14_76 1 32 32 NA [0] [31] 221 –/norW –/Nitric oxide reductase FlRd‑NAD(+) reductase
* * ÷ Xen14_79 12305 12553 249 95 [92] [0] NA [yceD_4] [yceD_4]
* * ÷ Xen14_85 11156 11197 42 93 [29] [0] NA Xen14_04471/– hypothetical protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Xen14_1 1 =0 (0.000)37 (0.560)
+25 bp
26/246 0.9 100% intergenic (–/‑286) –/Xen14_00001 –/hypothetical protein
?Xen14_148 943 = NA (NA)intergenic (‑46/–) Xen14_04761/– hypothetical protein/–
* ? Xen14_1 242480 =NA (NA)389 (2.930) 119/296 0.0 74.7% coding (66/375 nt) Xen14_00217 IS3 family transposase ISLad1
?Xen14_105 4697 = 132 (0.750)coding (418/480 nt) Xen14_04638 IS3 family transposase ISCfr6
* ? Xen14_10 = 471523 (2.970)366 (2.690) 159/268 0.0 60.7% intergenic (–/+246) –/hemG –/Protoporphyrinogen IX dehydrogenase [menaquinone]
?Xen14_23 = 73961 0 (0.000)intergenic (+235/–) gmhB/– D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase/–
* ? Xen14_10 = 1072170 (0.000)146 (0.260)
+TGAGTTCGGCATGGGG
83/264 0.7 100% intergenic (‑122/–) Xen14_01449/– tRNA‑Asp(gtc)/–
?Xen14_123 = 2714 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_102 = 55520 (0.000)44 (0.050)
+AGGAGAGC
20/280 2.2 100% intergenic (‑46/–) pinR/– Serine recombinase PinR/–
?Xen14_141 1 = 0 (0.000)intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
* ? Xen14_105 3420 =150 (0.850)103 (0.960) 54/186 0.3 68.6% intergenic (+42/+32) hypF/Xen14_04636 Carbamoyltransferase HypF/IS3 family transposase IS1397
?Xen14_49 56 = 0 (0.000)intergenic (–/+131) –/gldA –/Glycerol dehydrogenase
* ? Xen14_105 = 3625710 (4.040)94 (1.190)
+70 bp
54/156 0.0 31.6% coding (46/219 nt) Xen14_04636 IS3 family transposase IS1397
?Xen14_115 3560 = 61 (0.490)coding (448/486 nt) Xen14_04696 hypothetical protein
* ? Xen14_105 3688 =430 (2.450)104 (0.790)
+G
40/294 1.5 28.5% intergenic (‑18/‑140) Xen14_04636/Xen14_04637 IS3 family transposase IS1397/hypothetical protein
?Xen14_12 = 188 95 (1.060)intergenic (–/+140) –/Xen14_01540 –/hypothetical protein
* ? Xen14_106 = 1601150 (1.200)74 (0.140) 40/296 2.9 49.7% coding (17/453 nt) Xen14_04641 IS256 family transposase IS1414
?Xen14_167 = 666 0 (0.000)intergenic (+42/–) Xen14_04773/– IS3 family transposase IS629/–
* ? Xen14_107 4859 =NA (NA)85 (0.740)
+CC
48/292 0.6 37.9% coding (263/333 nt) torR_1 TorCAD operon transcriptional regulatory protein TorR
?Xen14_85 2720 = 141 (0.940)coding (689/819 nt) Xen14_04464 hypothetical protein
* ? Xen14_108 128 =115 (0.890)219 (1.900) 98/262 0.0 28.9% intergenic (–/‑193) –/Xen14_04652 –/hypothetical protein
?Xen14_27 108 = 978 (8.450)intergenic (–/‑43) –/Xen14_02709 –/IS66 family transposase IS682
* ? Xen14_11 = 6467 (0.540)44 (0.700)
+76 bp
23/144 2.1 61.3% intergenic (–/‑186) –/sacX –/Negative regulator of SacY activity
?Xen14_138 37 = 47 (0.360)coding (1191/1197 nt) scrY_2 Sucrose porin
* ? Xen14_110 1 =0 (0.000)35 (0.050) 30/246 0.7 100% intergenic (–/+87) –/ompW –/Outer membrane protein W
?Xen14_168 26 = 0 (0.000)intergenic (–/+34) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_113 1 =0 (0.000)166 (0.870)
+22 bp
96/252 0.1 100% intergenic (–/+326) –/Xen14_04684 –/tRNA‑Thr(ggt)
?Xen14_187 = 464 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_113 = 42750 (0.000)83 (0.680) 52/220 1.3 59.9% intergenic (‑176/–) murB/– UDP‑N‑acetylenolpyruvoylglucosamine reductase/–
?Xen14_3 166191 = 111 (0.990)intergenic (‑55/–) Xen14_00565/– tRNA‑Thr(ggt)/–
* ? Xen14_115 = 77NA (NA)72 (0.580) 41/296 2.8 39.1% intergenic (–/‑777) –/Xen14_04695 –/hypothetical protein
?Xen14_43 = 39557 112 (0.910)intergenic (‑21/+364) yhdJ_2/Xen14_03575 DNA adenine methyltransferase YhdJ/hypothetical protein
* ? Xen14_115 = 78NA (NA)75 (0.120)
+35 bp
48/226 0.9 100% intergenic (–/‑776) –/Xen14_04695 –/hypothetical protein
?Xen14_168 1 = 0 (0.000)intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_117 = 7729 (0.430)38 (0.560) 29/292 1.7 36.8% intergenic (–/+1345) –/nleF –/Effector protein NleF
?Xen14_7 136257 = 102 (1.510)coding (569/651 nt) zinT Metal‑binding protein ZinT
* ? Xen14_118 1 =0 (0.000)31 (0.070) 22/234 1.4 100% intergenic (–/+257) –/cbpM –/Chaperone modulatory protein CbpM
?Xen14_184 = 442 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_118 3283 =NA (NA)43 (0.440) 29/296 1.4 28.5% intergenic (+24/–) agp/– Glucose‑1‑phosphatase/–
?Xen14_43 39549 = 108 (0.880)intergenic (‑13/+372) yhdJ_2/Xen14_03575 DNA adenine methyltransferase YhdJ/hypothetical protein
* ? Xen14_119 = 32080 (0.000)54 (0.080) 38/246 1.3 100% intergenic (+81/–) crcB/– Putative fluoride ion transporter CrcB/–
?Xen14_168 26 = 0 (0.000)intergenic (–/+34) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_12 = 18895 (1.060)57 (1.230) 31/178 0.2 66.6% intergenic (–/+140) –/Xen14_01540 –/hypothetical protein
?Xen14_29 60 = 0 (0.000)intergenic (–/+63) –/trpA –/Tryptophan synthase alpha chain
* ? Xen14_12 = 18895 (1.060)54 (0.410) 31/296 2.5 36.2% intergenic (–/+140) –/Xen14_01540 –/hypothetical protein
?Xen14_68 16331 = NA (NA)intergenic (+51/–) rph/– Ribonuclease PH/–
* ? Xen14_12 = 18978 (0.870)54 (0.730) 27/294 1.5 41.1% intergenic (–/+139) –/Xen14_01540 –/hypothetical protein
?Xen14_21 = 59 NA (NA)intergenic (–/+18) –/add –/Adenosine deaminase
* ? Xen14_121 1 =0 (0.000)62 (0.140) 43/236 0.9 100% intergenic (–/+117) –/Xen14_04715 –/hypothetical protein
?Xen14_184 = 443 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_123 1 =0 (0.000)580 (0.790)
+34 bp
182/228 0.6 100% intergenic (–/–) –/– –/–
?Xen14_205 = 404 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_123 = 2649324 (0.300)205 (0.410)
+27 bp
109/242 0.0 56.8% intergenic (–/–) –/– –/–
?Xen14_3 = 166278 57 (0.380)intergenic (‑142/–) Xen14_00565/– tRNA‑Thr(ggt)/–
* ? Xen14_123 = 27140 (0.000)275 (0.490)
+TCCCA
124/286 0.0 100% intergenic (–/–) –/– –/–
?Xen14_4 1 = 0 (0.000)intergenic (–/+787) –/Xen14_00566 –/IS110 family transposase ISCro5
* ? Xen14_124 1 =0 (0.000)89 (0.660)
+A
61/294 0.9 100% intergenic (–/‑29) –/Xen14_04720 –/hypothetical protein
?Xen14_165 = 691 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_124 1 =0 (0.000)84 (0.620)
+G
61/294 0.9 100% intergenic (–/‑29) –/Xen14_04720 –/hypothetical protein
?Xen14_165 = 691 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_124 = 25760 (0.000)47 (0.620)
+28 bp
33/240 0.4 100% intergenic (+232/–) sctC_2/– Type 3 secretion system secretin/–
?Xen14_21 74761 = NA (NA)intergenic (+146/–) hipA/– Serine/threonine‑protein kinase toxin HipA/–
* ? Xen14_126 = 2082208 (0.740)814 (1.670)
+47 bp
127/202 0.0 92.0% coding (296/420 nt) Xen14_04726 hypothetical protein
?Xen14_206 = 403 0 (0.000)intergenic (+94/–) Xen14_04788/– hypothetical protein/–
* ? Xen14_126 2440 =NA (NA)26 (0.260)
+65 bp
22/166 0.9 100% intergenic (+148/–) Xen14_04727/– hypothetical protein/–
?Xen14_99 = 6045 0 (0.000)intergenic (‑484/–) Xen14_04599/– hypothetical protein/–
* ? Xen14_13 = 983180 (0.000)70 (0.120) 40/218 0.8 100% intergenic (+227/–) gltI/– Glutamate/aspartate import solute‑binding protein/–
?Xen14_168 = 590 0 (0.000)intergenic (‑72/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
* ? Xen14_131 846 =54 (0.630)85 (0.670) 44/296 0.7 75.9% coding (93/573 nt) Xen14_04737 hypothetical protein
?Xen14_151 1 = 0 (0.000)intergenic (–/‑66) –/Xen14_04764 –/hypothetical protein
* ? Xen14_134 212 =85 (0.850)54 (0.590)
+GTATCAGTTAGCG
31/270 1.5 41.0% intergenic (–/+635) –/Xen14_04742 –/tRNA‑Arg(tct)
?Xen14_134 = 213 85 (0.850)intergenic (–/+634) –/Xen14_04742 –/tRNA‑Arg(tct)
* ? Xen14_134 693 =70 (0.700)38 (0.340) 29/296 1.9 35.2% intergenic (–/+154) –/Xen14_04742 –/tRNA‑Arg(tct)
?Xen14_90 = 74 NA (NA)coding (1/747 nt) yafV Omega‑amidase YafV
* ? Xen14_134 = 69568 (0.680)49 (0.410) 29/296 1.9 41.9% intergenic (–/+152) –/Xen14_04742 –/tRNA‑Arg(tct)
?Xen14_162 691 = NA (NA)coding (388/390 nt) Xen14_04771 hypothetical protein
* ? Xen14_134 1002 =68 (0.680)48 (0.640)
+50 bp
32/196 0.7 51.0% intergenic (‑79/+19) Xen14_04742/Xen14_04743 tRNA‑Arg(tct)/tRNA‑Met(cat)
?Xen14_96 = 5905 71 (0.560)noncoding (59/77 nt) Xen14_04572 tRNA‑Arg(tcg)
* ? Xen14_136 1 =0 (0.000)91 (0.870) 55/218 0.3 100% intergenic (–/+298) –/intA_4 –/Prophage integrase IntA
?Xen14_170 = 580 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_136 = 15661 (0.010)649 (0.630)
+C
157/294 0.0 99.9% intergenic (‑55/–) intA_6/– Prophage integrase IntA/–
?Xen14_141 1 = 0 (0.000)intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
* ? Xen14_138 = 75NA (NA)78 (0.900)
+62 bp
54/172 0.2 100% coding (1153/1197 nt) scrY_2 Sucrose porin
?Xen14_45 = 40401 0 (0.000)intergenic (‑73/–) Xen14_03654/– hypothetical protein/–
* ? Xen14_141 1 =0 (0.000)44 (0.050)
+GCTCTCC
30/282 1.1 100% intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
?Xen14_39 = 48485 0 (0.000)intergenic (‑47/–) Xen14_03386/– hypothetical protein/–
* ? Xen14_141 1 =0 (0.000)43 (0.040)
+GCTCTCCT
32/280 2.7 100% intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
?Xen14_75 1 = 0 (0.000)intergenic (–/‑127) –/Xen14_04339 –/hypothetical protein
* ? Xen14_145 1 =0 (0.000)60 (0.200) 40/210 2.1 100% intergenic (–/–) –/– –/–
?Xen14_183 44 = 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_145 1 =0 (0.000)36 (0.130) 27/210 0.7 100% intergenic (–/–) –/– –/–
?Xen14_32 = 55348 0 (0.000)intergenic (+261/–) Xen14_03070/– hypothetical protein/–
* ? Xen14_145 1 =0 (0.000)345 (1.050) 109/214 0.0 100% intergenic (–/–) –/– –/–
?Xen14_54 42 = 0 (0.000)intergenic (–/‑49) –/hokA –/Protein HokA
* ? Xen14_145 1 =0 (0.000)61 (0.190) 41/212 2.4 100% intergenic (–/–) –/– –/–
?Xen14_85 = 11155 0 (0.000)intergenic (+105/–) Xen14_04471/– hypothetical protein/–
* ? Xen14_145 1 =0 (0.000)55 (0.170)
+33 bp
30/230 1.3 66.9% intergenic (–/–) –/– –/–
?Xen14_86 = 3481 70 (0.800)coding (44/213 nt) Xen14_04476 hypothetical protein
* ? Xen14_148 = 9890 (0.000)57 (0.660) 38/202 0.1 100% intergenic (‑92/–) Xen14_04761/– hypothetical protein/–
?Xen14_182 = 431 0 (0.000)intergenic (+22/–) Xen14_04782/– hypothetical protein/–
* ? Xen14_149 1 =0 (0.000)123 (0.960) 85/296 0.1 100% intergenic (–/+60) –/neo –/Aminoglycoside 3'‑phosphotransferase
?Xen14_82 1 = 0 (0.000)intergenic (–/‑679) –/Xen14_04422 –/hypothetical protein
* ? Xen14_149 = 9800 (0.000)104 (0.810) 64/296 0.7 100% intergenic (‑104/–) neo/– Aminoglycoside 3'‑phosphotransferase/–
?Xen14_82 1 = 0 (0.000)intergenic (–/‑679) –/Xen14_04422 –/hypothetical protein
* ? Xen14_156 328 =253 (1.200)44 (0.330) 29/280 1.7 22.0% coding (516/822 nt) Xen14_04768 hypothetical protein
?Xen14_88 = 9844 72 (1.050)coding (156/345 nt) Xen14_04512 hypothetical protein
* ? Xen14_159 = 72933 (0.290)52 (0.540) 31/296 2.0 46.6% intergenic (+397/–) Xen14_04769/– hypothetical protein/–
?Xen14_60 = 18896 86 (1.120)intergenic (+512/+385) Xen14_04101/yeeW hypothetical protein/Protein YeeW
* ? Xen14_160 1 =0 (0.000)68 (0.420) 48/282 0.8 100% intergenic (–/‑16) –/Xen14_04770 –/hypothetical protein
?Xen14_189 = 446 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_160 1 =0 (0.000)80 (0.500) 57/284 0.6 100% intergenic (–/‑16) –/Xen14_04770 –/hypothetical protein
?Xen14_189 = 447 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_160 = 7800 (0.000)69 (0.560)
+25 bp
50/246 0.7 68.9% intergenic (+524/–) Xen14_04770/– hypothetical protein/–
?Xen14_96 = 5300 75 (0.590)coding (8/1782 nt) Xen14_04570 hypothetical protein
* ? Xen14_163 = 7530 (0.000)72 (0.350) 57/294 1.0 49.1% intergenic (‑125/–) ompX_3/– Outer membrane protein X/–
?Xen14_170 = 168 149 (1.010)intergenic (–/–) –/– –/–
* ? Xen14_163 = 7530 (0.000)259 (0.960) 132/276 0.1 100% intergenic (‑125/–) ompX_3/– Outer membrane protein X/–
?Xen14_193 = 434 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_166 = 6850 (0.000)3228 (2.800) 234/244 -0.0 95.2% intergenic (–/–) –/– –/–
?Xen14_17 = 79810 326 (2.190)coding (460/741 nt) Xen14_02064 IS4 family transposase ISEc13
* ? Xen14_168 1 =0 (0.000)435 (0.620) 144/244 0.0 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_31 27 = 0 (0.000)intergenic (–/‑202) –/aspT_2 –/Aspartate/alanine antiporter
* ? Xen14_168 1 =0 (0.000)45 (0.070) 37/242 2.2 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_46 = 40324 0 (0.000)intergenic (‑92/–) Xen14_03701/– hypothetical protein/–
* ? Xen14_168 1 =0 (0.000)43 (0.060) 31/242 2.3 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_67 28 = 0 (0.000)intergenic (–/‑63) –/gltJ –/Glutamate/aspartate import permease protein GltJ
* ? Xen14_168 1 =0 (0.000)72 (0.100) 43/246 2.1 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_80 26 = 0 (0.000)intergenic (–/+67) –/arcA –/Aerobic respiration control protein ArcA
* ? Xen14_168 = 6290 (0.000)19 (0.040) 12/172 2.1 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_2 63 = 0 (0.000)intergenic (–/+66) –/ydgJ –/putative oxidoreductase YdgJ
* ? Xen14_168 = 6290 (0.000)58 (0.080)
+ACCCCCAGCCTAGCT
36/266 0.6 82.2% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_29 = 59 28 (0.430)intergenic (–/+64) –/trpA –/Tryptophan synthase alpha chain
* ? Xen14_168 = 6290 (0.000)31 (0.050) 24/210 1.4 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_62 44 = 0 (0.000)intergenic (–/+117) –/Xen14_04136 –/hypothetical protein
* ? Xen14_168 = 6290 (0.000)278 (0.430) 107/222 0.0 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_68 = 16345 0 (0.000)intergenic (+65/–) rph/– Ribonuclease PH/–
* ? Xen14_169 1 =0 (0.000)100 (0.970) 63/194 0.1 100% intergenic (–/+5) –/Xen14_04775 –/IS66 family transposase ISCro1
?Xen14_82 = 11932 0 (0.000)intergenic (+623/–) Xen14_04434/– hypothetical protein/–
* ? Xen14_171 1 =0 (0.000)85 (0.760) 45/294 1.1 62.7% intergenic (–/+60) –/Xen14_04776 –/hypothetical protein
?Xen14_64 = 2419 101 (1.200)coding (62/699 nt) Xen14_04183 hypothetical protein
* ? Xen14_172 1 =0 (0.000)31 (0.460) 21/294 1.4 38.0% intergenic (–/+60) –/Xen14_04777 –/hypothetical protein
?Xen14_64 = 2419 101 (1.200)coding (62/699 nt) Xen14_04183 hypothetical protein
* ? Xen14_174 1 =0 (0.000)83 (0.780)
+29 bp
33/238 1.7 66.3% intergenic (–/–) –/– –/–
?Xen14_96 5121 = 105 (0.830)coding (187/1782 nt) Xen14_04570 hypothetical protein
* ? Xen14_177 1 =0 (0.000)69 (0.600)
+24 bp
46/248 0.8 69.9% intergenic (–/–) –/– –/–
?Xen14_96 = 5308 71 (0.560)intergenic (‑1/+489) Xen14_04570/Xen14_04571 hypothetical protein/tRNA‑Arg(tct)
* ? Xen14_177 1 =0 (0.000)56 (0.480)
+24 bp
40/248 1.1 65.3% intergenic (–/–) –/– –/–
?Xen14_96 = 5308 71 (0.560)intergenic (‑1/+489) Xen14_04570/Xen14_04571 hypothetical protein/tRNA‑Arg(tct)
* ? Xen14_177 = 5490 (0.000)39 (0.460)
+57 bp
26/182 1.3 69.4% intergenic (–/–) –/– –/–
?Xen14_96 5541 = 56 (0.440)intergenic (‑234/+256) Xen14_04570/Xen14_04571 hypothetical protein/tRNA‑Arg(tct)
* ? Xen14_177 = 5490 (0.000)26 (0.310)
+57 bp
23/182 1.6 60.2% intergenic (–/–) –/– –/–
?Xen14_96 5541 = 56 (0.440)intergenic (‑234/+256) Xen14_04570/Xen14_04571 hypothetical protein/tRNA‑Arg(tct)
* ? Xen14_180 = 5260 (0.000)151 (1.460) 91/234 0.0 100% intergenic (–/–) –/– –/–
?Xen14_197 = 402 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_183 = 4770 (0.000)49 (0.470)
+GGTGCCGATCA
34/274 2.4 40.1% intergenic (–/–) –/– –/–
?Xen14_75 12904 = 158 (1.470)intergenic (+578/–) Xen14_04344/– hypothetical protein/–
* ? Xen14_184 = 4730 (0.000)85 (0.190) 50/232 1.4 100% intergenic (–/–) –/– –/–
?Xen14_34 = 53052 0 (0.000)intergenic (+42/–) gpr_2/– L‑glyceraldehyde 3‑phosphate reductase/–
* ? Xen14_184 = 4730 (0.000)310 (0.680) 123/232 0.0 100% intergenic (–/–) –/– –/–
?Xen14_58 = 24540 0 (0.000)intergenic (+147/–) yjjW/– Putative glycyl‑radical enzyme activating enzyme YjjW/–
* ? Xen14_184 = 4730 (0.000)38 (0.090) 31/234 1.0 100% intergenic (–/–) –/– –/–
?Xen14_60 32 = 0 (0.000)intergenic (–/+159) –/hisI –/Histidine biosynthesis bifunctional protein HisIE
* ? Xen14_184 = 4730 (0.000)190 (0.430) 99/232 0.0 100% intergenic (–/–) –/– –/–
?Xen14_76 33 = 0 (0.000)intergenic (–/+178) –/norW –/Nitric oxide reductase FlRd‑NAD(+) reductase
* ? Xen14_188 = 4580 (0.000)99 (0.550)
+29 bp
61/238 1.3 61.7% intergenic (–/–) –/– –/–
?Xen14_45 = 36472 153 (0.920)intergenic (‑79/+18) Xen14_03645/Xen14_03646 hypothetical protein/hypothetical protein
* ? Xen14_188 = 4580 (0.000)82 (0.460)
+29 bp
56/238 1.8 57.1% intergenic (–/–) –/– –/–
?Xen14_45 = 36472 153 (0.920)intergenic (‑79/+18) Xen14_03645/Xen14_03646 hypothetical protein/hypothetical protein
* ? Xen14_19 57504 =6 (0.040)82 (0.620) 57/278 1.8 91.8% intergenic (‑120/+361) fimA_2/Xen14_02204 Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1
?Xen14_19 57818 = 9 (0.070)intergenic (‑434/+47) fimA_2/Xen14_02204 Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1
* ? Xen14_19 = 5751211 (0.080)96 (0.730) 63/278 1.3 90.8% intergenic (‑128/+353) fimA_2/Xen14_02204 Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1
?Xen14_19 = 57808 9 (0.070)intergenic (‑424/+57) fimA_2/Xen14_02204 Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1
* ? Xen14_20 1 =0 (0.000)66 (1.040) 45/192 0.2 100% intergenic (–/‑80) –/Xen14_02217 –/hypothetical protein
?Xen14_33 = 53189 0 (0.000)intergenic (+37/–) Xen14_03104/– ISNCY family transposase ISRor2/–
* ? Xen14_200 1 =0 (0.000)95 (0.290)
+64 bp
56/168 0.2 100% intergenic (–/–) –/– –/–
?Xen14_26 = 75 NA (NA)intergenic (–/‑145) –/Xen14_02639 –/hypothetical protein
* ? Xen14_204 1 =0 (0.000)104 (0.830)
+ATTGCTGGG
59/278 0.8 100% intergenic (–/–) –/– –/–
?Xen14_90 = 74 NA (NA)coding (1/747 nt) yafV Omega‑amidase YafV
* ? Xen14_21 = 75NA (NA)20 (0.350)
+23 bp
16/250 2.7 100% intergenic (–/+2) –/add –/Adenosine deaminase
?Xen14_93 = 7777 0 (0.000)intergenic (‑302/–) ghrA/– Glyoxylate/hydroxypyruvate reductase A/–
* ? Xen14_37 = 4288543 (0.430)34 (0.520)
+51 bp
22/194 2.6 54.7% noncoding (1/76 nt) Xen14_03291 tRNA‑Val(tac)
?Xen14_55 = 54 NA (NA)intergenic (–/‑434) –/nadA –/Quinolinate synthase A
* ? Xen14_38 15257 =116 (0.940)69 (0.620) 48/268 1.3 50.0% intergenic (‑104/‑373) xerC_4/Xen14_03318 Tyrosine recombinase XerC/hypothetical protein
?Xen14_61 77 = 33 (0.300)intergenic (–/‑67) –/hin_4 –/DNA‑invertase hin
* ? Xen14_38 15257 =116 (0.940)51 (0.480) 40/268 2.1 41.8% intergenic (‑104/‑373) xerC_4/Xen14_03318 Tyrosine recombinase XerC/hypothetical protein
?Xen14_63 = 19808 37 (0.360)intergenic (+293/–) Xen14_04181/– hypothetical protein/–
* ? Xen14_41 1 =0 (0.000)60 (0.990) 41/162 0.2 100% noncoding (1/76 nt) Xen14_03432 tRNA‑Arg(acg)
?Xen14_76 = 12864 0 (0.000)intergenic (+63/–) Xen14_04356/– tRNA‑Arg(acg)/–
* ? Xen14_55 1 =0 (0.000)33 (0.530)
+55 bp
19/186 3.0 100% intergenic (–/‑487) –/nadA –/Quinolinate synthase A
?Xen14_55 = 54 NA (NA)intergenic (–/‑434) –/nadA –/Quinolinate synthase A
* ? Xen14_55 = 267150 (0.000)53 (0.520)
+GTAGCAGTAAT
37/274 2.1 100% intergenic (‑222/–) Xen14_03965/– hypothetical protein/–
?Xen14_90 = 74 NA (NA)coding (1/747 nt) yafV Omega‑amidase YafV
* ? Xen14_75 12904 =158 (1.470)73 (0.720)
+TGATCGGCA
37/278 2.1 33.1% intergenic (+578/–) Xen14_04344/– hypothetical protein/–
?Xen14_75 = 12904 156 (1.450)intergenic (+578/–) Xen14_04344/– hypothetical protein/–
* ? Xen14_86 1 =0 (0.000)46 (0.430)
+C
38/294 1.4 100% intergenic (–/+378) –/Xen14_04472 –/hypothetical protein
?Xen14_96 = 6916 0 (0.000)intergenic (‑44/–) Xen14_04574/– hypothetical protein/–
* ? Xen14_86 1 =0 (0.000)82 (0.770)
+T
60/294 0.2 100% intergenic (–/+378) –/Xen14_04472 –/hypothetical protein
?Xen14_96 = 6916 0 (0.000)intergenic (‑44/–) Xen14_04574/– hypothetical protein/–