New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_21	= 75	NA (NA)	20 (0.350) +AAATATGGCGGTGAGGGGGGGAT	16/250	2.7	100%	intergenic (–/+2)	–/add	–/Adenosine deaminase
	?	Xen14_93	= 7777	0 (0.000)					intergenic (‑302/–)	ghrA/–	Glyoxylate/hydroxypyruvate reductase A/–

‑‑‑‑‑‑‑GTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGAATGATATC  >  Xen14_21/1‑223                                                                                  |                                                                                                                                                     tgcgcctgTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGa                                                                                  <  1:739591/143‑1 (MQ=255)       tgTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCNCTGAGGAAAGCCATTTCCAGACCATTa                                                                            >  1:3900354/2‑150 (MQ=255)          tAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATc                                                                         >  1:2319034/1‑150 (MQ=255)            gggCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCtg                                                                       >  1:518875/1‑150 (MQ=255)               cgcgGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGc                                                                    <  1:1466185/150‑1 (MQ=255)               cgcgGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGc                                                                    <  1:1466189/150‑1 (MQ=255)                       gTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGa                                                            >  1:2181829/1‑150 (MQ=255)                       gTAAGAGAGCCTTATAGGCGCACTTGCACAACCTCCGGCTATGCCAGAGGATATTTATTTGTTCCTTCTCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTTCGCTGAGGAAAGCCATTTCCAGACCACTAATCTGTGCCTGGCGGa                                                            >  1:2181826/1‑150 (MQ=37)                         aaGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGAtt                                                          <  1:1319021/150‑1 (MQ=255)                         aaGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGAtt                                                          <  1:710498/150‑1 (MQ=255)                           gagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCCGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTg                                                        <  1:478134/150‑1 (MQ=255)                                 cTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTcgcg                                                  >  1:2019053/1‑150 (MQ=255)                                  gcgtaGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTACGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCgg                                                 <  1:60622/147‑1 (MQ=255)                                   tataTGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTACGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCggg                                                <  1:3436626/150‑1 (MQ=255)                                      aGGCGCATTTGAAAAACCTTCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATa                                             <  1:3159360/150‑1 (MQ=255)                                       ggCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATaa                                            >  1:2232000/1‑150 (MQ=255)                                       ggCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATaa                                            >  1:2764012/1‑150 (MQ=255)                                                 aaaaaCCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCt                                  <  1:3652856/150‑1 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCCGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg                            >  1:99829/1‑150 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg                            <  1:2837692/150‑1 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg                            <  1:2837691/150‑1 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg                            <  1:3555446/150‑1 (MQ=255)                                                             cTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGTGGATTTGCTCGCGGGATAACCcagcag                                    >  1:3083320/1‑136 (MQ=255)                                                              tATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACgg                     <  1:2095950/150‑1 (MQ=255)                                                               aTGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGt                    <  1:3638843/150‑1 (MQ=255)                                                               aTGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGt                    <  1:1033407/150‑1 (MQ=255)                                                                    ggaggaTATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGc                                                       <  1:211795/110‑1 (MQ=255)                                                                         atatTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGGAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGa          <  1:1397438/150‑1 (MQ=255)                                                                         atatTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCACTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGa          <  1:1708560/150‑1 (MQ=255)                                                                          tatttattCGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGaa         <  1:1921450/150‑1 (MQ=255)                                                                           atttatttGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGAAt        <  1:2908842/150‑1 (MQ=255)                                                                               atttGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGAATGata    >  1:1647922/1‑150 (MQ=255)                                                                                 ttGTTACTTCGCTGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGAATGATATc  <  1:1068599/150‑1 (MQ=255)                                                                                  |                                                                                                                                                     ‑‑‑‑‑‑‑GTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGTATATTCGTGAATGATATC  >  Xen14_21/1‑223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.