New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_115	= 78	NA (NA)	75 (0.120) +GCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGA	48/226	0.9	100%	intergenic (–/‑776)	–/Xen14_04695	–/hypothetical protein
	?	Xen14_168	1 =	0 (0.000)					intergenic (–/+59)	–/Xen14_04774	–/IS200/IS605 family transposase IS200C

‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTTCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTAAGATTC  >  Xen14_115/1‑227                                                                                           |                                                                                                                                                      tatgtgggatggctGGTTCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACg                                                                                            >  1:3926914/14‑150 (MQ=255)        gatggctGGTTCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTgg                                                                                     <  1:3059306/144‑1 (MQ=255)        gatggctGGTTCAGACATAAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCGGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTgg                                                                                     <  1:543780/144‑1 (MQ=255)           ggctGGTTCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTACAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAat                                                                                  >  1:943881/4‑150 (MQ=255)                gTTCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAGCGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATAtt                                                                             >  1:4450529/1‑150 (MQ=255)                  tCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTag                                                                           <  1:114645/150‑1 (MQ=255)                  tCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTag                                                                           <  1:780748/150‑1 (MQ=255)                  tCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTag                                                                           <  1:780749/150‑1 (MQ=255)                  tCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTag                                                                           <  1:114641/150‑1 (MQ=255)                  tCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTag                                                                           <  1:114646/150‑1 (MQ=255)                     gACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAgaga                                                                        <  1:3032662/150‑1 (MQ=255)                          cAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACaaa                                                                   <  1:2795969/150‑1 (MQ=255)                              atatGGCTGAGGGTTACCTGGTGAGGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGATAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAAtt                                                               <  1:3886402/150‑1 (MQ=255)                                  ggCTGGGGGTTACCTGGTGATAAAGTTTCTTGATCAGGAGATTTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCaa                                                           <  1:1869263/150‑1 (MQ=255)                                  ggCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCaa                                                           <  1:2544769/150‑1 (MQ=255)                                   gCTGGGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATTGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAat                                                          <  1:4113860/150‑1 (MQ=255)                                   gCTGAGGGTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATAGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAat                                                          <  1:3219248/150‑1 (MQ=255)                                   gCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACGGGTCAAAGATGGGGGACAATGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAANAATTTCAat                                                          >  1:3914676/1‑150 (MQ=255)                                   gCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAat                                                          <  1:1842483/150‑1 (MQ=255)                                    cTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAata                                                         <  1:1505315/150‑1 (MQ=255)                                          gTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATgtggt                                                   <  1:2491788/150‑1 (MQ=255)                                          gTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGATAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATgtggt                                                   <  1:2431741/150‑1 (MQ=255)                                            tccctgggtatgaATTCTCTTGATCAGGAGATCTAATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGGCGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGtggtgg                                                 <  1:985691/141‑1 (MQ=255)                                               cTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGGATATATTAAAGAACAAAAATTTCAATATGTGGTGGACg                                              >  1:3289593/1‑150 (MQ=255)                                                 ggTGATGAAGTCTCTTGATCAGGAGATCTGATCAGGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCa                                            <  1:1947040/150‑1 (MQ=255)                                                   tgatgaATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGTGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATa                                          <  1:697894/150‑1 (MQ=255)                                                   tgatgaATTCCCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGTGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGAc                                               <  1:3941242/145‑1 (MQ=255)                                                   tgatgaAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATa                                          <  1:697897/150‑1 (MQ=255)                                                     atgaAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACGACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACa                                        >  1:4131036/1‑150 (MQ=255)                                                     atgaAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACGACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACa                                        >  1:3825104/1‑150 (MQ=255)                                                     atgaAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATATGGTGGACGCATACa                                        >  1:2551491/1‑150 (MQ=255)                                                      tgaAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGATCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACag                                       >  1:60053/1‑150 (MQ=255)                                                        aaGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACagag                                     >  1:353287/1‑150 (MQ=255)                                                            ctctTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATTAGGGACAACGTCTGGTACTGTATCCCAGCACAGGCCTCACACTCTTGACGCCAGTGGAATCTCTTCGCGGAGACAAATTTCCATATGTGATGGACGCATCCAGATGAtt                                 >  1:2766306/1‑150 (MQ=255)                                                            ctctTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGAtt                                 <  1:3301784/150‑1 (MQ=255)                                                             tcttgatcagatctccTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTg                                >  1:2027855/16‑150 (MQ=255)                                                             tcttgatcagatctccTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTg                                >  1:2027858/16‑150 (MQ=255)                                                             tcttgatcagatctccTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTg                                >  1:2027859/16‑150 (MQ=255)                                                             tctTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTg                                >  1:2566306/1‑150 (MQ=255)                                                               ttGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGAc                              <  1:900379/150‑1 (MQ=255)                                                                  accAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGc                           <  1:561693/148‑1 (MQ=255)                                                                  aTCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGc                           >  1:4042485/1‑150 (MQ=255)                                                                    cAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCAt                         >  1:1988832/1‑150 (MQ=255)                                                                     aGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGAAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCAtt                        >  1:3076025/1‑150 (MQ=255)                                                                         gaTCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCAGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAANATNTTAGAGAACAAAAATTTCAATATGTGGTNGACGCATACAGAGGATTGACAGCATTCCCa                    >  1:3748002/1‑150 (MQ=255)                                                                            cTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACGGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATAc                 <  1:2779824/150‑1 (MQ=255)                                                                              gATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGAGGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTa               >  1:3544208/1‑150 (MQ=255)                                                                              gATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTa               >  1:3800386/1‑150 (MQ=255)                                                                               aTCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTaa              >  1:3494765/1‑150 (MQ=255)                                                                                tCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAAt             <  1:1179869/150‑1 (MQ=255)                                                                                tCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAAt             <  1:1179870/150‑1 (MQ=255)                                                                                    gagaCAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGtt         >  1:789841/1‑150 (MQ=255)                                                                                     agaCAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTa        <  1:3460207/150‑1 (MQ=255)                                                                                     agaCAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTa        <  1:3305469/150‑1 (MQ=255)                                                                                     agaCAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTGGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTa        <  1:2865516/150‑1 (MQ=255)                                                                                          ggTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTccc                     >  1:4168413/1‑132 (MQ=255)                                                                                          ggTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTAAGAtt   <  1:1711954/150‑1 (MQ=255)                                                                                          ggTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTAAGAtt   >  1:2825486/1‑150 (MQ=255)                                                                                           gTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTAAGATTc  >  1:2467112/1‑150 (MQ=255)                                                                                           |                                                                                                                                                      ‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTTCAGACATCAGGATATGGCTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGTCAAAGATGGGGGACAACGTCTGGTGCTGTATAACAGCACAGGCCTCACACTCTTGACGCCCGTGGAATATATTAGAGAACAAAAATTTCAATATGTGGTGGACGCATACAGAGGATTGACAGCATTCCCATACTAATTGTTAAGATTC  >  Xen14_115/1‑227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.