New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_12	= 189	78 (0.870)	54 (0.730)	27/294	1.5	41.1%	intergenic (–/+139)	–/Xen14_01540	–/hypothetical protein
	?	Xen14_21	= 59	NA (NA)					intergenic (–/+18)	–/add	–/Adenosine deaminase

‑‑‑‑‑‑‑GTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGT  >  Xen14_21/1‑205                                                                  |                                                                                                                                                   tgcgcctgTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGa                                                                <  1:739591/143‑1 (MQ=255)       tgTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCNCTGAGGAAAGCCATTTCCAGACCATTa                                                          >  1:3900354/2‑150 (MQ=255)          tAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATc                                                       >  1:2319034/1‑150 (MQ=255)            gggCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCtg                                                     >  1:518875/1‑150 (MQ=255)               cgcgGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGc                                                  <  1:1466185/150‑1 (MQ=255)               cgcgGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGc                                                  <  1:1466189/150‑1 (MQ=255)                       gTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGa                                          >  1:2181829/1‑150 (MQ=255)                       gTAAGAGAGCCTTATAGGCGCACTTGCACAACCTCCGGCTATGCCAGAGGATATTTATTTGTTCCTTCTCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTTCGCTGAGGAAAGCCATTTCCAGACCACTAATCTGTGCCTGGCGGa                                          >  1:2181826/1‑150 (MQ=37)                         aaGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGAtt                                        <  1:1319021/150‑1 (MQ=255)                         aaGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGAtt                                        <  1:710498/150‑1 (MQ=255)                           gagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCCGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTg                                      <  1:478134/150‑1 (MQ=255)                                 cTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTcgcg                                >  1:2019053/1‑150 (MQ=255)                                  gcgtaGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTACGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCgg                               <  1:60622/147‑1 (MQ=255)                                   tataTGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTACGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCggg                              <  1:3436626/150‑1 (MQ=255)                                      aGGCGCATTTGAAAAACCTTCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATa                           <  1:3159360/150‑1 (MQ=255)                                       ggCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATaa                          >  1:2764012/1‑150 (MQ=255)                                       ggCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATaa                          >  1:2232000/1‑150 (MQ=255)                                                 aaaaaCCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCt                <  1:3652856/150‑1 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCCGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg          >  1:99829/1‑150 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg          <  1:3555446/150‑1 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg          <  1:2837692/150‑1 (MQ=255)                                                       cTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGcgcg          <  1:2837691/150‑1 (MQ=255)                                                             cTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGTGGATTTGCTCGCGGGATAACCcagcag                  >  1:3083320/1‑136 (MQ=255)                                                              tATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACgg   <  1:2095950/150‑1 (MQ=255)                                                               aTGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGt  <  1:3638843/150‑1 (MQ=255)                                                               aTGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGt  <  1:1033407/150‑1 (MQ=255)                                                                  |                                                                                                                                                   ‑‑‑‑‑‑‑GTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTTGTTACTTCGCGGCGACTTTTTCTCGCAGTGCGCGTTTTTCCTCTGCGCTGAGGAAAGCCATTTCCAGACCATTAATCTGTGCCTGGCGGATTTGCTCGCGGGATAACCCAGCAGCTGGCGCGGCAACGGT  >  Xen14_21/1‑205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.