| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_117 | = 77 | 29 (0.430) | 38 (0.560) | 29/292 | 1.7 | 36.8% | intergenic (–/+1345) | –/nleF | –/Effector protein NleF |
| ? | Xen14_7 | 136257 = | 102 (1.510) | coding (569/651 nt) | zinT | Metal‑binding protein ZinT | |||||
‑‑‑‑‑‑‑‑‑TTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAATATAGG > Xen14_117/1‑225 | cttcagttatttAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTCTTATGTCTGTAg > 1:2464508/10‑119 (MQ=17)cgttagggatttAAAAGAACATTGCCCGGTAGGAACAACGAGAATGTACCAAGACAAATAAGTAAGAAAAACTCAAGCACGCTCATACTGGAGGCGTTTCTTTTTTATTATGTCTGGAGAAAAAAACCGAGAAAAAGGCGAACGATAAAt < 1:3301986/141‑1 (MQ=19) agttatttAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGAGAACGATAAATacac > 1:1475006/6‑150 (MQ=255) agttatttAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAAGCGAACGATAACTacac > 1:1475007/6‑150 (MQ=255) tatttAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTGTGTAGAAAAAAACCGAGAAAAAGGAGAACGATAAATCcacatc > 1:3258410/3‑148 (MQ=21) tAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAg > 1:2143677/1‑150 (MQ=255) aacagaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtc > 1:200763‑M1/1‑74 (MQ=255) aacagaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAACACACAACTCAGc > 1:1405356/1‑150 (MQ=255) cagaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctc < 1:4160472‑M1/150‑79 (MQ=255) agaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCtat > 1:3671161/1‑150 (MQ=255) gaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAACCTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTGTTATGTCTGTAGAAAAAAAACGAGAAAAAGGAGAACGATAAGTACACAACTCAGCtata > 1:3711065/1‑150 (MQ=25) gaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCtata < 1:1461476/150‑1 (MQ=255) gaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCtata < 1:1461478/150‑1 (MQ=255) gaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCtata < 1:1461479/150‑1 (MQ=255) gTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaaagtattatccctatcagttgagtagcgaagaagtggccgaggagatgatgtctaattgctt > 1:3726152‑M1/1‑65 (MQ=255) cTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAGCTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttt < 1:1508815‑M1/150‑90 (MQ=255) cTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttt < 1:1545387‑M1/150‑90 (MQ=255) cTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGc < 1:2143955/150‑1 (MQ=255) cTGGTAGTAACAACCATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttt < 1:1545388‑M1/150‑90 (MQ=255) cTGGTAATAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACACTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttt < 1:1508819‑M1/150‑90 (MQ=255) tGGTAGTAACAACTATAATTTACCAAGACAAGTAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCa < 1:2171582/150‑1 (MQ=255) tGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgattttttt < 1:1890737‑M1/150‑91 (MQ=255) gtagtaACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgc < 1:723355‑M1/150‑93 (MQ=255) gtaACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgct > 1:2606742‑M1/1‑55 (MQ=255) taACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTCTTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCaa > 1:2338321/1‑150 (MQ=255) acaacTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTTATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgac < 1:2362537‑M1/150‑99 (MQ=255) caacTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgact > 1:54642‑M1/1‑51 (MQ=255) acTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttc > 1:2129303‑M1/1‑49 (MQ=255) cTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttca > 1:1489898‑M1/1‑48 (MQ=255) cTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAAt < 1:3619782/112‑1 (MQ=255) ataATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagt < 1:1818144‑M1/150‑105 (MQ=255) ataATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagt < 1:1818143‑M1/150‑105 (MQ=255) taATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagtt > 1:1670079‑M1/1‑45 (MQ=255) aaTTTACCAAGACGAATAGGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctc < 1:4193241‑M1/122‑79 (MQ=255) aaTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagtta > 1:1931321‑M1/1‑44 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttat > 1:1356960‑M1/1‑43 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgattttttt < 1:875329‑M1/133‑91 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTCTAGAAAAAAACCAAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACCGGCAGCGTAAACGTCTCCAgg > 1:4089938/1‑150 (MQ=38) ccAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaac > 1:2050059‑M1/1‑38 (MQ=255) ccAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaac < 1:1346566‑M1/150‑113 (MQ=255) cAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgact < 1:1132034‑M1/136‑100 (MQ=255) cAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgact < 1:1132030‑M1/136‑100 (MQ=255) aaGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgcctgacatggaaccctgtccaacgtattatccctatcaggtgagtagcgactaagtggtcgaggatataatgtctcattgatttttttgcgctgacttcagttatttaacag > 1:1734351‑M1/1‑36 (MQ=255) aaGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacag < 1:980280‑M1/150‑115 (MQ=255) aaGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGt < 1:3342114/150‑1 (MQ=255) cAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATc > 1:3454643/1‑150 (MQ=255) cAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATc < 1:3639928/150‑1 (MQ=255) cAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATc < 1:3639930/150‑1 (MQ=255) cAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAAACGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATc > 1:3955521/1‑150 (MQ=255) aagtaagAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcc < 1:132102‑M1/150‑124 (MQ=255) gtaagAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctg > 1:3037519‑M1/1‑25 (MQ=255) gtaagAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTTTAGAAAAAAACCAAGAAAAAGGCGAACGATAAATACCCAACTCAACTATCCAGACCGGCAGCGCAAAGGTCTCCAAGAGCAAGTCATCtctcctg > 1:3406960/1‑144 (MQ=255) taagAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctgg < 1:3961804‑M1/150‑127 (MQ=255) agAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggta > 1:12368‑M1/1‑22 (MQ=255) aaaaaCTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTaaa < 1:3892170/150‑1 (MQ=255) aaCTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctntcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaac > 1:3949878‑M1/1‑17 (MQ=255) aaCTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaac > 1:3954951‑M1/1‑17 (MQ=255) aaCTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCt < 1:1234017/150‑1 (MQ=255) aCTCAGACACGTTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctg < 1:2271455‑M1/112‑97 (MQ=255) aCTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctg < 1:582320‑M1/112‑97 (MQ=255) aCTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTTTAGAAAAAAAACGAGAAAAAAGCGAACGATCAATACACAACTCAGCTATACAGACTGGCAACGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTa > 1:3285857/1‑150 (MQ=255) gACACGCTCATACTTGAGTCGTGTCTTTTTTCTTCTGTCTCTAGAAAAAAAACGAGAAAAAGGCGAACGACAAATACACAACTCCGCTATCCCGAATGGGAGCGTAAATGTCTCCAGGAGCAAGTCATCTCTCCCGGTAAAGcccaccag > 1:304750/1‑143 (MQ=255) cacGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGaa < 1:2897476/150‑1 (MQ=255) gCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagta < 1:2834544‑M1/137‑132 (MQ=255) cTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaacaactataattta > 1:1502409‑M1/1‑5 (MQ=255) cATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatt < 1:3881576‑M1/111‑109 (MQ=255) aTACTTGGGTCGTTTCTTTTTTATTATGTCTGGAGAAAAAAACCGAGAAAAAGGCGAACGAGAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAATATAgg < 1:2196268/150‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑TTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAATATAGG > Xen14_117/1‑225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |