New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_124	= 2576	0 (0.000)	47 (0.620) +CCTTCGGTTTTCATCAGTCCTGATAACA	33/240	0.4	100%	intergenic (+232/–)	sctC_2/–	Type 3 secretion system secretin/–
	?	Xen14_21	74761 =	NA (NA)					intergenic (+146/–)	hipA/–	Serine/threonine‑protein kinase toxin HipA/–

GACGGCAGTTGAAACCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCTTTTTATACATAA‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_21/74614‑74837                                                                                                                                                    |                                                                                          gACGGCAGTTGAAACCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTg                                                                                         <  1:781769/150‑1 (MQ=255) gACGGCAGTTGAAACCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTg                                                                                         <  1:781764/150‑1 (MQ=255)   cGGCAGTTGAAACCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTgcg                                                                                       <  1:3932631/150‑1 (MQ=255)             aaCCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGa                                                                             >  1:4233183/1‑150 (MQ=255)              aCCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGac                                                                            <  1:609589/150‑1 (MQ=255)                   tgtgTTGATGTTGCACGGTCGGTTAAGCCGAGAATACTGTATTAAGTAAGATATGGGGTTTTGTTCGTTGTTAATAAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGNGCATAATGTGACAcgcg                                                                       <  1:3750479/150‑1 (MQ=255)                      gtTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTa                                                                    <  1:992840/150‑1 (MQ=255)                      gtTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTa                                                                    <  1:992837/150‑1 (MQ=255)                        tGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATg                                                                  >  1:1050365/1‑150 (MQ=255)                           ggTTGCACCGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTg                                                               >  1:272227/1‑150 (MQ=255)                                cACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTGTATGTTGGTGCGCATAATGTGACACGCGTTATGGTGAAAAg                                                          <  1:2911769/150‑1 (MQ=255)                                  cggtcggtTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGc                                                        >  1:4278806/1‑150 (MQ=255)                                  cggtcggtTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCAAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGc                                                        >  1:4136484/1‑150 (MQ=255)                                            aGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGTAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATa                                              >  1:1976286/1‑150 (MQ=255)                                                       cGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCCACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGc                                   <  1:471853/150‑1 (MQ=255)                                                           aTTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCg                               >  1:2523401/1‑150 (MQ=255)                                                           aTTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCg                               >  1:2523398/1‑150 (MQ=255)                                                                gtaagATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCtt                          >  1:2525894/1‑150 (MQ=255)                                                                   agATATGGGTTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCTTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCttttt                       <  1:896141/150‑1 (MQ=255)                                                                   agATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCttttt                       <  1:896140/150‑1 (MQ=255)                                                                        tGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCtt                          <  1:935310/142‑1 (MQ=255)                                                                            gTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTCTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCTTTTTATACATaac              <  1:3021809/150‑2 (MQ=255)                                                                                 ggTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCTTTTTATACATaacgccat         >  1:2617625/1‑144 (MQ=255)                                                                                   tCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCTTTTTATACATaacgccattg       <  1:3773730/150‑9 (MQ=255)                                                                                       tgttAATGAGCAGAACAATCCATGCACCGCCAACGACTGTATTCTCCCTTAGTTTATGTTGGTGCGCATGATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGTGGCCTTTTTCTACATaacgcccttatgca   >  1:2654653/1‑138 (MQ=18)                                                                                        gttAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCTTTTTATACATaacgccattgtgcgc  >  1:3560609/1‑137 (MQ=255)                                                                                                                                                    |                                                                                          GACGGCAGTTGAAACCAATGTGTTGAGGTTGCACGGTCGGTTAAGCCGAGAATACGGTATTAAGTAAGATATGGGGTTTTGGTCGTTGTTAATGAGCAGAACAATCCATGAACCGCCAACGACTGGATTCTCCCTTGGTTTATGTTGGTGCGCATAATGTGACACGCGTTATGTTGAAAAGGCCGCTGCGATACTTTCCACCGCAGCGGCCTTTTTATACATAA‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_21/74614‑74837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.