| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_168 | 1 = | 0 (0.000) | 43 (0.060) | 31/242 | 2.3 | 100% | intergenic (–/+59) | –/Xen14_04774 | –/IS200/IS605 family transposase IS200C |
| ? | Xen14_67 | 28 = | 0 (0.000) | intergenic (–/‑63) | –/gltJ | –/Glutamate/aspartate import permease protein GltJ | |||||
GATTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Xen14_168/99‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACA > Xen14_67/28‑145 GATTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTC < 1:3492176/150‑1 ATTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCT > 1:1724501/1‑150 ATTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCT > 1:1724500/1‑150 ATTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCT > 1:1724497/1‑150 TTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTCGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTG < 1:3131275/150‑1 TCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTTCGGCTATGCCGGAGGATATTTATTCTGG < 1:1545193/150‑1 CAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATG < 1:1803625/150‑1 AGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGT < 1:2182360/150‑1 GCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTC > 1:338648/1‑150 GCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCATTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTC > 1:3574705/1‑150 CCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTA > 1:1357671/1‑150 GTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATA > 1:3211102/1‑150 TTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAG < 1:2021342/150‑1 TACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGGGTAGATTTATGTCTATAGAC > 1:1921694/1‑150 CGGGCCGTCAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTG > 1:2124568/1‑150 GGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGA > 1:3477515/1‑150 GCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCTGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCT < 1:1229310/139‑1 GTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTG > 1:2008016/1‑150 AGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGG < 1:2935185/150‑1 GTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAACCTTATAGGCGCATTTGAAACACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGT > 1:4132199/1‑150 TAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTA > 1:1147975/1‑150 AACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAT > 1:1648777/1‑150 CGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTT > 1:2179019/1‑150 CGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTCGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTT > 1:413824/1‑150 GAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTT > 1:4005912/1‑150 AAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTT < 1:1341434/150‑1 ATGCAAATGTCAGATCGTGTGCGCCTGGGAGTGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCTGGAGAATATTTATTCTGGAGTAGATTGATGTCTAGAGGCTGGAACTGGGGGAGTTTGTTACAAC < 1:3528656/150‑1 atgcAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACA > 1:3737989/5‑150 CAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTT < 1:660094/142‑1 AATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCC > 1:2023676/1‑150 AATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCC > 1:2023673/1‑150 TCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGT > 1:1711830/1‑150 CAGATCGTGTGCGCCTGTTGGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTATAACAAGCCCCGTT > 1:2600667/1‑150 CAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTCTTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTT > 1:597938/1‑150 CAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTT > 1:597927/1‑150 CAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTT > 1:597928/1‑150 CAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTT > 1:597933/1‑150 AGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTC > 1:3566878/1‑150 TCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGC < 1:1233629/150‑1 TCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGC < 1:1233630/150‑1 TCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGC < 1:1233634/150‑1 CGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCA < 1:1873827/150‑1 GTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACA > 1:1720843/1‑150 GATTCCCTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTGGATGCAAATGTCAGATCGTGTGCGCCTGTTAGGGCGCGGCTGGTAAGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Xen14_168/99‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACA > Xen14_67/28‑145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |