New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_12	= 189	78 (0.870)	54 (0.730)	27/294	1.5	41.1%	intergenic (–/+139)	–/Xen14_01540	–/hypothetical protein
	?	Xen14_21	= 59	NA (NA)					intergenic (–/+18)	–/add	–/Adenosine deaminase

GGCGAAACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_12/42‑189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGGCTCTCTTACCAGCCGCGCCCTAAC‑‑‑‑‑‑‑  <  Xen14_21/59‑1                                                                                                                                                                                                                        GGCGAAACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGg                                                                  >  1:2198734/1‑149  GCGAAACTGGGGCGATGGCATGACAACAAACACACCGGTCGCCCCGGTTGGGTAGTCGTGTGGGATGGCTGGTTCAGACTTCAGGATGTGGTTGAGGGTTACTTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCA                                                                 <  1:1475123/150‑1    GAAACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATA                                                               >  1:3790870/1‑150    GAAACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGACTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGgtac                                                               >  1:1438076/1‑146     AAACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATCAAGTCTCCTGATCAGGAGATCTGATCAAGAGACAGGGgtaca                                                              <  1:2230479/150‑6     AAACTGGGGCGATGGCAGGACAACAAACGCACTGGCCGCCCCGTTTGGGTATTCATGTGGGAGGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGgtaca                                                              <  1:4014513/150‑6      AACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGC                                                             >  1:375668/1‑150       ACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGCCTCTTGATCATGAGATCTGATCAAGAGACAGGGCATAGCC                                                            <  1:3989776/150‑1         TGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGgtacagaga                                                          >  1:4218109/1‑141         TGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGgtacagaga                                                          >  1:1373764/1‑141         TGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGG                                                          >  1:831292/1‑150         TGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGG                                                          >  1:831291/1‑150          GGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGA                                                         >  1:1813447/1‑150          GGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGA                                                         >  1:711687/1‑150          GGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGA                                                         >  1:3397/1‑150           GGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGgtacagagaga                                                        >  1:2829930/1‑139           GGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAG                                                        <  1:1708083/150‑1            GGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGG                                                       <  1:225906/150‑1            GGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGG                                                       <  1:2022228/150‑1             GCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCGGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCcgagggggggca                                                      >  1:293694/1‑138             GCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCGGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCcgagggggggca                                                      >  1:293696/1‑138             GCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCGGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGACCAAGAGACAGGGCcgagggggggca                                                      >  1:314001/1‑138              CGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGgtacagagagaggc                                                     >  1:3108755/1‑136              CGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTT                                                     >  1:871115/1‑150              CGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCAGGAGGTT                                                     >  1:4067393/1‑150                atgaCATGACAACAAACACACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAATTCTCTGGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTT                                                   <  1:1324639/146‑1                ATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTT                                                   <  1:1822305/150‑1                ATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTT                                                   <  1:1016365/150‑1                ATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTT                                                   <  1:1822304/150‑1                  GGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCCCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTC                                                 >  1:766276/1‑150                   aCATGACAGCAAACACACCGGTCACCCCGGTTGGTTATTCATGTGGGATGGTTGGTTCAGACTTCAGGATGTGGTTGGGGGTTACTTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCA                                                <  1:964718/149‑1                   GCATGACAGCAAACGCACCGTTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTAAGACTTCAGGATCTGGGTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATTGGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCA                                                <  1:1251751/150‑1                   GCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCA                                                <  1:3188995/150‑1                     ATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGATTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAA                                              >  1:2819451/1‑150                     ATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGATTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCAGGAAGTTTTTCAAA                                              >  1:3832300/1‑150                      TGACAGCAAACGCACCGTTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAAT                                             <  1:326796/150‑1                      TGACAGCAAACGCACCGGTCGCCCCGTTTGGGTAGTCATGTGGGGTGGCTGGTTCAGACTTCAGGAGGTGGTTGAGGGTTACCTGGTGATGAGTTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAAT                                             <  1:326794/150‑1                      TGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCGTGTTGGATGGCTGGTTCAGACTTCAGGATGTGGTTGAGGGTTACCTGGTGATGAAGTCTCTGGATCAGGAGATCGGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAAT                                             <  1:3692238/150‑1                                 aCACCGGTCGCCCCGGTTGGGTAGTCATGTGGAATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAG                                  <  1:712875/149‑1                                        TCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGATACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAANAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCT                           <  1:3949138/150‑1                                          GCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCGGGATATGGTTGAGGGTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCGAATGCGCCTATAAGACTCTCTTA                         >  1:1198976/1‑150                                          GCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTA                         >  1:679865/1‑150                                           CCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTAC                        <  1:2141161/150‑1                                              CGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTGGAGGGTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAG                     <  1:2492978/150‑1                                                 TTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGTTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCGAGGGACAGGGCATAGCCGGAGGTTTTTTAAATGCGCCTATAAGACTCTCTTACCAGCCG                  <  1:3291627/150‑1                                                    GGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGC               <  1:344618/150‑1                                                     GTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCC              >  1:2633655/1‑150                                                     GTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCC              >  1:2073604/1‑150                                                      TAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATAGGGTTGAGGGTTACCTGGTGATGAATTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCCC             <  1:3113889/150‑1                                                        GTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCCCTA           <  1:62197/150‑1                                                              TGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCCCTAACaggc     <  1:1524449/150‑5                                                               GGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCCCTgacaggcg    >  1:2319716/1‑142                                                                 GATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGTCTATAAGACTCTCTTACCAGCCGCGCCCTAACaggcgca  >  1:4280226/1‑143                                                                 GATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGACTCTCTTACCAGCCGCGCCCTAACaggcgca  <  1:2820569/150‑8                                                                                                                                                                                                                        GGCGAAACTGGGGCGATGGCATGACAGCAAACGCACCGGTCGCCCCGGTTGGGTAGTCATGTGGGATGGCTGGTTCAGACTTCAGGATATGGTTGAGGGTTACCTGGTGATGAAGTCTCTTGATCAGGAGATCTGATCAAGAGACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_12/42‑189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGGCTCTCTTACCAGCCGCGCCCTAAC‑‑‑‑‑‑‑  <  Xen14_21/59‑1

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.