New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_118	1 =	0 (0.000)	31 (0.070)	22/234	1.4	100%	intergenic (–/+257)	–/cbpM	–/Chaperone modulatory protein CbpM
	?	Xen14_184	= 442	0 (0.000)					intergenic (–/–)	–/–	–/–

GCGACGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Xen14_118/142‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtttatgaaacattcatttgaagtaaaacTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACTCTTTCAACTTTCT  <  Xen14_184/442‑372                                                                                                                                                                                                                       gtGACGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCT                                                                 >  1:4297168/3‑150  CGACGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGTATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTG                                                                >  1:2869236/1‑150  CGACGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTG                                                                >  1:560076/1‑150  CGACGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTG                                                                >  1:560075/1‑150     CGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCGCCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAA                                                             >  1:3558518/1‑150          AACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCAT                                                        >  1:2918121/1‑150                TCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTG                                                  >  1:2836882/1‑150                TCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGCAAATCATTACCTG                                                  <  1:1760488/150‑1                TCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGCAAATCATTACCTG                                                  <  1:1760489/150‑1                    ATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATCAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTG                                              >  1:1926828/1‑150                    ATCAGGCCCACAAAAAGCACCGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTG                                              <  1:3826486/150‑1                          CCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATG                                        >  1:808270/1‑150                          CCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATG                                        >  1:4095173/1‑150                          CCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATG                                        >  1:1942239/1‑150                             ACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAG                                     <  1:4097224/150‑1                             ACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAG                                     >  1:1596653/1‑150                              CAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGG                                    >  1:1617281/1‑150                              CAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGG                                    >  1:1617279/1‑150                                    GCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCAT                              >  1:3642143/1‑150                                            CCCGTAGGCTGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGG                      >  1:3428954/1‑150                                            CCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGG                      <  1:2772446/150‑1                                                TAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAA                  <  1:2425280/150‑1                                                   GCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACT               >  1:1062729/1‑150                                                    CCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACTC              >  1:1079207/1‑150                                                      GGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACTCTT            <  1:3159926/150‑1                                                          AAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTATGGCAAAACTCTTTCAA        <  1:1799062/150‑1                                                           AGGCGTTCTGAACTGCATCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACCTTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCGGGCATCATTTCTACGGCAAAACTCTTTCAAC       >  1:1371394/1‑150                                                           AGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACTTTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACTCTTTCAAC       <  1:1557503/150‑1                                                           AGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACTCTTTCAAC       >  1:3831712/1‑150                                                                TTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCGGGCATCATTTCTACGGCAAAACTCTTTCAACTTTCT  <  1:2288777/150‑1                                                                TTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAACTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCGGGCATCATTTCTACGGCAAAACTCTTTCAACTTTCT  <  1:2288776/150‑1                                                                                                                                                                                                                       GCGACGCTTAACGCATCTTATCAGGCCCACAAAAAGCACTGTTCCCGTAGGCCGGATAAGGCGTTCTGAACTGCACCCCAAATGTTGGACATAATCTGACATCTGAAGGTACAGTTTATGAAACATTCATTTGAAGTAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Xen14_118/142‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtttatgaaacattcatttgaagtaaaacTTGCCGCTGTAAATCATTACCTGGCTGGTCATGCAGGCATCATTTCTACGGCAAAACTCTTTCAACTTTCT  <  Xen14_184/442‑372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.