| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_102 | = 5552 | 0 (0.000) | 44 (0.050) +AGGAGAGC |
20/280 | 2.2 | 100% | intergenic (‑46/–) | pinR/– | Serine recombinase PinR/– |
| ? | Xen14_141 | 1 = | 0 (0.000) | intergenic (–/‑23) | –/Xen14_04755 | –/hypothetical protein | |||||
TAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_102/5404‑5552 | tAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCa < 1:2754729‑M1/150‑2 (MQ=255) agagagCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCGCCTGATTCag < 1:4137530‑M1/150‑3 (MQ=255) agagagCACATCAACGGTATTACACCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCag > 1:3064534‑M1/1‑148 (MQ=255) agagagCACATCAACGGTATTACACCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCag > 1:3064535‑M1/1‑148 (MQ=255) gagCACATCAACGGTATTATGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggag < 1:3070884‑M1/150‑6 (MQ=255) gCACATCAACGGTATTATGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagag < 1:2371724‑M1/150‑8 (MQ=255) acaTCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagct < 1:1542612‑M1/150‑10 (MQ=255) acaTCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCagga < 1:3646331‑M1/145‑5 (MQ=255) tACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcactttt > 1:2488590‑M1/1‑128 (MQ=255) aCGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttg < 1:3534540‑M1/150‑24 (MQ=255) aaaCGGTCAATAGCTACCACAACTAACGCATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCGGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagt < 1:997443‑M1/150‑31 (MQ=255) cGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttat > 1:2252907‑M1/1‑117 (MQ=255) ggTCAATAGCTACCACAACTAACGTATCGTCACACCCTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCGCTCCTGATTCaggagagcttatggtcacttttgagacagttatg < 1:1873794‑M1/150‑35 (MQ=255) gTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatgg < 1:4165017‑M1/150‑36 (MQ=255) tAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaatt < 1:1937057‑M1/150‑41 (MQ=255) tAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGATGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTCATTCaggagagcttatggtcacttttgagacagttatggaaatt < 1:2361974‑M1/150‑41 (MQ=255) aCCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGGGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGTGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaat < 1:3686180‑M1/150‑46 (MQ=255) catacgtacagatactgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagg < 1:3432389‑M1/138‑60 (MQ=255) tCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCCGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggg < 1:4001407‑M1/150‑61 (MQ=255) cGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggga < 1:3836429‑M1/150‑62 (MQ=255) cGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggga < 1:3007998‑M1/150‑62 (MQ=255) cGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaagtaaaatcctgcacaagcaggga < 1:4099800‑M1/150‑62 (MQ=255) gTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa > 1:4175176‑M1/1‑88 (MQ=255) gTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa < 1:697780‑M1/150‑63 (MQ=255) ttacgcacacctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagtttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3666114‑M1/140‑64 (MQ=255) ttacgcacacctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:2632598‑M1/11‑87 (MQ=255) tcatcttcccctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgtacaagcagggaat > 1:1110029‑M1/11‑87 (MQ=255) tcatcttcccctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3767108‑M1/140‑64 (MQ=255) tCACACCTTACTGTCGCGAACGGTGCAATAGTGATCCAAACCTAACGCCGGAAATCAGATCCATGGGGTAATCTGCTCTCCTGATTTatgagagtttatggtcacttttgagacagttatggaaattaaaatcctgtacaagcagggaat < 1:4089966‑M1/150‑64 (MQ=255) cgttcagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3337402‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:1574873‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3337404‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaac > 1:3388826‑M1/9‑87 (MQ=255) tacgcacacctgtcacgaaCGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatg < 1:734392‑M1/141‑65 (MQ=255) catcttcccctgtcacgaaCGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatg > 1:2387659‑M1/10‑86 (MQ=255) catcttcccctgtcacgaaCGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatg > 1:2387658‑M1/10‑86 (MQ=255) cgccttACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag > 1:287547‑M1/3‑84 (MQ=255) cgcacacctgtcacgAACGGTGCAATAGTGATCCACACCCAACTCCTGAAATCAGATCCAGGGGGTAGTCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:2943005‑M1/143‑67 (MQ=255) cgcacacctgtcacaAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:2199171‑M1/143‑67 (MQ=255) ccagatactgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:379506‑M1/145‑67 (MQ=255) ccagatactgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:4308248‑M1/145‑67 (MQ=255) cacCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag > 1:1038281‑M1/1‑84 (MQ=255) cacacctgtcaCGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagta > 1:2917632‑M1/6‑82 (MQ=255) cacacctgtcaCGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagta < 1:4324629‑M1/145‑69 (MQ=255) tcccctgtcACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtag > 1:741826‑M1/5‑81 (MQ=255) acacctgtcACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtag < 1:3704699‑M1/146‑70 (MQ=255) cctGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccg > 1:1788951‑M1/2‑78 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcggggaatgagtagccgg > 1:3172319‑M1/1‑77 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcggggaatgagtagccgg > 1:3172320‑M1/1‑77 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccgg > 1:3816989‑M1/1‑77 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccgg > 1:2291703‑M1/1‑77 (MQ=255) | TAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_102/5404‑5552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |