New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_118	3283 =	NA (NA)	43 (0.440)	29/296	1.4	28.5%	intergenic (+24/–)	agp/–	Glucose‑1‑phosphatase/–
	?	Xen14_43	39549 =	108 (0.880)					intergenic (‑13/+372)	yhdJ_2/Xen14_03575	DNA adenine methyltransferase YhdJ/hypothetical protein

ATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑  >  Xen14_118/3135‑3355                                                                                                                                                     |                                                                                 aTGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCt                                                                                 <  1:1765012/150‑1 (MQ=255)  tGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTg                                                                                <  1:2353985/150‑1 (MQ=255)       tAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTctct                                                                           <  1:1838419/150‑1 (MQ=255)          cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCGCCCGCGTGAAGCCTGTCTCTtat                                                                        <  1:1833355/150‑1 (MQ=255)          cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                        >  1:1538509/1‑150 (MQ=255)          cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                        >  1:1538513/1‑150 (MQ=255)          cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                        >  1:3832878/1‑150 (MQ=255)          cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTAGTGAATGAAGTGGTGAAATAACAGAAACCTCCCCCGCGTGAAGCCTGTCtattat                                                                        >  1:2966908/1‑150 (MQ=255)           ccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtata                                                                       <  1:1841156/150‑1 (MQ=255)           ccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtata                                                                       >  1:2292369/1‑150 (MQ=255)            cTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAGGGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATac                                                                      <  1:2214450/150‑1 (MQ=255)            cTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATac                                                                      <  1:3045992/150‑1 (MQ=255)            cTGCAGGCACCTGCGCAGCGCGCGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATac                                                                      <  1:2214451/150‑1 (MQ=255)               cAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATAcaca                                                                   <  1:3326218/150‑1 (MQ=255)                   cACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATc                                                               >  1:193097/1‑150 (MQ=255)                   cACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATc                                                               >  1:193099/1‑150 (MQ=255)                   cACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAAATCCCCCGCGTGAAGCCTGTCTCTTATACACAAATc                                                               >  1:193101/1‑150 (MQ=255)                   cACCTGCGCAGCGCGTGACGCTGGAATTAAGCGATTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATc                                                               >  1:3632501/1‑150 (MQ=255)                     ccTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccc                                                             >  1:2568802/1‑150 (MQ=255)                      cTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATcccc                                                            <  1:355050/150‑1 (MQ=255)                       tGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCa                                                           <  1:3390197/150‑1 (MQ=255)                       tGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCa                                                           <  1:3390194/150‑1 (MQ=255)                       tGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCa                                                           <  1:3390195/150‑1 (MQ=255)                         cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccccccc                                                         <  1:1646911/150‑4 (MQ=255)                         cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:467082/1‑150 (MQ=255)                         cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:2574264/1‑150 (MQ=255)                         cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:467083/1‑150 (MQ=255)                         cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         <  1:1646912/150‑1 (MQ=255)                         cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:467087/1‑150 (MQ=255)                             gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                     <  1:1064148/150‑1 (MQ=255)                             gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                     <  1:1064152/150‑1 (MQ=255)                             gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                     <  1:1064151/150‑1 (MQ=255)                                   gACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccccgggtggggatttg                                               <  1:168109/150‑14 (MQ=255)                                      gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATCCACAACCCCCCAACCGGGGATTTGTGa                                            >  1:1283513/1‑150 (MQ=255)                                      gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGa                                            <  1:3282383/150‑1 (MQ=255)                                        tGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtg                                          <  1:2659321/150‑1 (MQ=255)                                           aaTTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtgtct                                       >  1:2825780/1‑150 (MQ=255)                                            aTTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtgtctg                                      >  1:2400819/1‑150 (MQ=255)                                                  cGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCATGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTc                                >  1:300127/1‑150 (MQ=255)                                                         ccGATAGATGCCACCGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTa                         >  1:4141700/1‑150 (MQ=255)                                                         ccGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTa                         >  1:2950379/1‑150 (MQ=255)                                                              aGATGCCAATGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAggggg                    <  1:414469/150‑1 (MQ=255)                                                                aTGCCAACAGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGAc                  <  1:3779763/150‑1 (MQ=255)                                                                  gCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATATACAAATCCCCACCCTGGGATTTGTGAt                                           <  1:3471736/123‑1 (MQ=255)                                                                   ccAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGActct               >  1:836505/1‑150 (MQ=255)                                                                         gTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCat         >  1:453720/1‑149 (MQ=255)                                                                           ttttGCCCAAGGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGGTTTGTGAtgtctg                                      <  1:3189586/119‑1 (MQ=255)                                                                            tttGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGa                   >  1:1703267/1‑137 (MQ=255)                                                                            tttGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccg      >  1:1640255/1‑146 (MQ=255)                                                                                cccAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtag  <  1:88271/150‑9 (MQ=255)                                                                                cccAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtag  <  1:88272/150‑9 (MQ=255)                                                                                                                                                     |                                                                                 ATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑  >  Xen14_118/3135‑3355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.