New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_126	2440 =	NA (NA)	26 (0.260) +TCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCAGAT	22/166	0.9	100%	intergenic (+148/–)	Xen14_04727/–	hypothetical protein/–
	?	Xen14_99	= 6045	0 (0.000)					intergenic (‑484/–)	Xen14_04599/–	hypothetical protein/–

AAGGAGGAGCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_126/2292‑2515                                                                                                                                                     |                                                                                           aaGGAGGAGCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTg                                                                                           >  1:671407/1‑150 (MQ=255)  aggaggAGCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGt                                                                                          >  1:3780491/1‑150 (MQ=255)  aggaggAGCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGt                                                                                          >  1:3817351/1‑150 (MQ=255)    gaggagCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTAt                                                                                        >  1:4455389/1‑150 (MQ=255)     aggagCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGCATg                                                                                       <  1:693289/150‑1 (MQ=255)          cAGTAATGGATTAAGTGATAACAAATGCCCAGAAAGAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTcc                                                                                  <  1:3399102/150‑1 (MQ=255)             tAATGGATTAAGTGATAGCAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTccacc                                                                               <  1:3618699/150‑1 (MQ=255)               aTGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCcaccac                                                                             <  1:1951768/150‑1 (MQ=255)                 ggATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATg                                                                                       <  1:1152890/138‑1 (MQ=255)                 ggATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATg                                                                                       <  1:1152885/138‑1 (MQ=255)                 ggATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATg                                                                                       <  1:2633084/138‑1 (MQ=255)                         tGATAACAAATGCCCAGAAATAGAGGTTCAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAAt                                                                   >  1:2348641/1‑150 (MQ=255)                          gATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACATCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAAtt                                                                  >  1:3510219/1‑150 (MQ=255)                           aTAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAAttt                                                                 >  1:3413037/1‑150 (MQ=255)                           aTAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAAttt                                                                 >  1:3413039/1‑150 (MQ=255)                            tAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAAtttt                                                                >  1:4198363/1‑150 (MQ=255)                               cAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTAt                                                             >  1:2530498/1‑150 (MQ=255)                                aaaTGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTAtt                                                            <  1:3103137/150‑1 (MQ=255)                                  aTGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATtct                                                          <  1:3065872/150‑1 (MQ=255)                                    gCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATtct                                                          >  1:1332365/1‑148 (MQ=255)                                    gCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATtct                                                          >  1:1387734/1‑148 (MQ=255)                                     cccAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCtt                                                       >  1:441537/1‑150 (MQ=255)                                                 ggTTTAAACCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATAtt                                           >  1:1056571/1‑150 (MQ=255)                                                  gTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTc                                          >  1:3276767/1‑150 (MQ=255)                                                  gTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGACGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTc                                          >  1:2829378/1‑150 (MQ=255)                                                     tAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCAc                                       <  1:3527529/150‑1 (MQ=255)                                                     tAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCAc                                       >  1:709564/1‑150 (MQ=255)                                                      aaaTCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGACTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACg                                      <  1:3043366/150‑1 (MQ=255)                                                       aaTCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACgg                                     >  1:318917/1‑150 (MQ=255)                                                       aaTCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACgg                                     >  1:541632/1‑150 (MQ=255)                                                        aTCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACggg                                    >  1:2370988/1‑150 (MQ=255)                                                           cTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGt                                 <  1:3358218/150‑1 (MQ=255)                                                              cTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCAt                              <  1:3376340/150‑1 (MQ=255)                                                                tagttagtACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTa                            >  1:1639407/1‑150 (MQ=255)                                                                                 cTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTGAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgg           <  1:1882948/150‑7 (MQ=255)                                                                                 cTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgg           >  1:3435190/1‑144 (MQ=255)                                                                                  tATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtggg          <  1:4421135/150‑8 (MQ=255)                                                                                   aTTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgggg         <  1:1200342/150‑9 (MQ=255)                                                                                   aTTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgggg         <  1:1200343/150‑9 (MQ=255)                                                                                   aTTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgggg         <  1:502105/150‑9 (MQ=255)                                                                                   aTTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgggg         <  1:502100/150‑9 (MQ=255)                                                                                   aTTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgggg         <  1:1649586/150‑9 (MQ=255)                                                                                   aTTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtgggg         >  1:3608910/1‑142 (MQ=255)                                                                                    ttttGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtggggt        <  1:320725/150‑10 (MQ=255)                                                                                        gatgaAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtggggtcttt    >  1:2302171/1‑137 (MQ=255)                                                                                        gatgaAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtggggtcttt    >  1:289256/1‑137 (MQ=255)                                                                                          tgaAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGccttgtggggtcttttg  <  1:2368028/150‑16 (MQ=18)                                                                                              aaTTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGcc                 >  1:2425736/1‑131 (MQ=255)                                                                                                                                                     |                                                                                           AAGGAGGAGCAGTAATGGATTAAGTGATAACAAATGCCCAGAAATAGAGGTTTAAATCCTGCTTAGTTAGTACATAAATACTATTTTGATGAAAATTATTATATGTCACCTCGGATTTTAATCAGGCGCCCAGATTAAATCAAGTATTTGTATGGGTCCACCACATATTGCAATTTTTATTCTCTTTTAAAATATATTCCACGGGCGTCATTAGTGCGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_126/2292‑2515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.