#=GENOME_DIFF	1.0
#=CREATED	22:23:28 30 Oct 2024
#=PROGRAM	breseq 0.38.1 
#=COMMAND	breseq -j 32 -r /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen14.gff /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0003_good_1.fq.gz -o /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/breseq/Xen14_23B/
#=REFSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen14.gff
#=READSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0003_good_1.fq.gz
#=CONVERTED-BASES	668794458
#=CONVERTED-READS	4487615
#=INPUT-BASES	668798173
#=INPUT-READS	4487640
#=MAPPED-BASES	611959281
#=MAPPED-READS	4111343
SNP	1	159	Xen14_126	1873	T
SNP	2	160	Xen14_126	1876	A
SNP	3	161	Xen14_126	1885	T
SNP	4	162	Xen14_126	1888	A
SNP	5	163	Xen14_126	1897	A
SNP	6	164	Xen14_126	1900	T
SNP	7	165	Xen14_126	1942	G
SNP	8	166	Xen14_126	1945	C
SNP	9	167	Xen14_126	1951	G
SNP	10	168	Xen14_126	1964	G
SNP	11	169	Xen14_126	1966	T
SNP	12	170	Xen14_126	1979	C
SNP	13	172	Xen14_126	2023	A
SNP	14	173	Xen14_126	2026	A
SNP	15	174	Xen14_126	2043	A
SNP	16	175	Xen14_126	2053	T
SNP	17	176	Xen14_126	2059	G
SNP	18	177	Xen14_126	2062	C
INS	19	953	Xen14_143	77	GCTCTGC
SNP	20	273	Xen14_143	136	A
SNP	21	274	Xen14_143	155	A
SNP	22	280	Xen14_143	594	T
SNP	23	281	Xen14_143	630	C
SNP	24	282	Xen14_143	651	G
SNP	25	283	Xen14_143	654	C
SNP	26	284	Xen14_143	696	A
SNP	27	285	Xen14_143	700	G
SNP	28	286	Xen14_143	726	A
SNP	29	287	Xen14_143	742	G
SNP	30	288	Xen14_143	753	T
SUB	31	289,290	Xen14_143	782	2	GT
SNP	32	291	Xen14_143	785	A
SNP	33	292	Xen14_143	793	G
SNP	34	293	Xen14_143	807	T
SNP	35	294	Xen14_143	839	T
SNP	36	295	Xen14_143	858	A
SNP	37	296	Xen14_143	879	G
SNP	38	297	Xen14_143	915	T
SNP	39	298	Xen14_143	960	C
SNP	40	299	Xen14_143	967	T
SNP	41	300	Xen14_143	996	A
SNP	42	301	Xen14_143	1030	C
SNP	43	347	Xen14_17	79736	C
SNP	44	348	Xen14_17	79802	G
SNP	45	349	Xen14_17	80371	A
DEL	46	371	Xen14_19	57809	1
SUB	47	373,374	Xen14_191	220	2	GA
SUB	48	375,376	Xen14_191	226	2	GA
SNP	49	377	Xen14_191	229	T
SNP	50	378	Xen14_191	251	G
SNP	51	379	Xen14_191	268	G
SNP	52	380	Xen14_191	275	G
SNP	53	381	Xen14_191	292	C
SNP	54	382	Xen14_191	310	A
SNP	55	383	Xen14_191	334	A
SNP	56	384	Xen14_191	358	A
SNP	57	385	Xen14_191	370	C
SNP	58	396	Xen14_202	78	G
SNP	59	397	Xen14_202	105	A
SNP	60	398	Xen14_202	109	T
SNP	61	399	Xen14_202	126	G
SNP	62	400	Xen14_202	134	T
SNP	63	401	Xen14_202	140	A
SNP	64	402	Xen14_202	191	T
SNP	65	403	Xen14_202	244	T
SUB	66	404,405	Xen14_202	259	2	GG
SUB	67	406,407	Xen14_202	266	2	TC
SNP	68	408	Xen14_202	294	A
SNP	69	409	Xen14_202	314	A
SNP	70	410	Xen14_202	320	G
SNP	71	411	Xen14_202	323	A
SNP	72	412	Xen14_202	332	T
SNP	73	413	Xen14_202	335	A
SNP	74	414	Xen14_202	341	G
SNP	75	415	Xen14_202	344	C
SNP	76	491	Xen14_38	48371	T
SNP	77	600	Xen14_65	17250	A
SNP	78	631	Xen14_83	11287	C
SNP	79	632	Xen14_83	11302	C
SNP	80	633	Xen14_83	11305	C
SNP	81	634	Xen14_83	11315	C
RA	82	.	Xen14_1	34347	0	G	A	bias_e_value=1.2811	bias_p_value=2.58103e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.3	fisher_strand_p_value=1.34986e-08	frequency=3.623e-01	ks_quality_p_value=1	major_base=G	major_cov=29/15	major_frequency=6.377e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.623e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=29/15	total_cov=29/45
RA	83	.	Xen14_1	45445	0	G	A	bias_e_value=1.06588e-07	bias_p_value=2.14742e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.9	fisher_strand_p_value=5.95561e-16	frequency=2.981e-01	ks_quality_p_value=1	major_base=G	major_cov=59/14	major_frequency=7.019e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.981e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=59/14	total_cov=59/49
RA	84	.	Xen14_10	78	0	G	T	bias_e_value=4655960	bias_p_value=0.938032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=0.669282	frequency=5.445e-01	ks_quality_p_value=1	major_base=T	major_cov=119/199	major_frequency=5.445e-01	minor_base=G	minor_cov=105/161	new_cov=119/199	polymorphism_frequency=5.445e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=105/161	total_cov=225/360
RA	85	.	Xen14_10	132	0	T	G	bias_e_value=1648520	bias_p_value=0.332125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1125.0	fisher_strand_p_value=0.108144	frequency=6.587e-01	ks_quality_p_value=0.932204	major_base=G	major_cov=277/331	major_frequency=6.587e-01	minor_base=T	minor_cov=126/189	new_cov=277/331	polymorphism_frequency=6.587e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=126/189	total_cov=404/520
RA	86	.	Xen14_10	205	0	G	A	bias_e_value=1797790	bias_p_value=0.362198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.7	fisher_strand_p_value=0.114295	frequency=5.092e-01	ks_quality_p_value=1	major_base=A	major_cov=216/254	major_frequency=5.092e-01	minor_base=G	minor_cov=232/221	new_cov=216/254	polymorphism_frequency=5.092e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=232/221	total_cov=450/476
RA	87	.	Xen14_10	249	0	A	G	bias_e_value=2538110	bias_p_value=0.511351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=816.7	fisher_strand_p_value=0.199387	frequency=3.390e-01	ks_quality_p_value=0.970569	major_base=A	major_cov=288/291	major_frequency=6.610e-01	minor_base=G	minor_cov=134/163	new_cov=134/163	polymorphism_frequency=3.390e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=288/291	total_cov=423/454
RA	88	.	Xen14_10	252	0	G	A	bias_e_value=1788120	bias_p_value=0.360251	consensus_reject=FREQUENCY_CUTOFF	consensus_score=788.7	fisher_strand_p_value=0.113399	frequency=3.435e-01	ks_quality_p_value=1	major_base=G	major_cov=287/275	major_frequency=6.565e-01	minor_base=A	minor_cov=133/161	new_cov=133/161	polymorphism_frequency=3.435e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=287/275	total_cov=420/437
RA	89	.	Xen14_10	263	0	C	T	bias_e_value=1731510	bias_p_value=0.348846	consensus_reject=FREQUENCY_CUTOFF	consensus_score=771.3	fisher_strand_p_value=0.131778	frequency=3.446e-01	ks_quality_p_value=0.821194	major_base=C	major_cov=284/279	major_frequency=6.554e-01	minor_base=T	minor_cov=133/163	new_cov=133/163	polymorphism_frequency=3.446e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=284/279	total_cov=417/443
RA	90	.	Xen14_10	266	0	T	C	bias_e_value=2865690	bias_p_value=0.577348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.5	fisher_strand_p_value=0.379162	frequency=5.097e-01	ks_quality_p_value=0.623489	major_base=C	major_cov=213/232	major_frequency=5.097e-01	minor_base=T	minor_cov=218/210	new_cov=213/232	polymorphism_frequency=5.097e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=218/210	total_cov=431/442
RA	91	.	Xen14_10	394	0	T	C	bias_e_value=4879710	bias_p_value=0.98311	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1144.8	fisher_strand_p_value=0.831339	frequency=2.960e-01	ks_quality_p_value=0.988681	major_base=T	major_cov=363/310	major_frequency=7.040e-01	minor_base=C	minor_cov=155/128	new_cov=155/128	polymorphism_frequency=2.960e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=363/310	total_cov=518/438
RA	92	.	Xen14_10	472	0	G	A	bias_e_value=1935850	bias_p_value=0.390014	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.9	fisher_strand_p_value=0.153658	frequency=4.347e-01	ks_quality_p_value=0.829484	major_base=G	major_cov=160/130	major_frequency=5.653e-01	minor_base=A	minor_cov=108/115	new_cov=108/115	polymorphism_frequency=4.347e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=160/130	total_cov=268/246
RA	93	.	Xen14_10	510	0	G	C	bias_e_value=2197600	bias_p_value=0.44275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=992.2	fisher_strand_p_value=0.156239	frequency=2.826e-01	ks_quality_p_value=0.987879	major_base=G	major_cov=208/188	major_frequency=7.174e-01	minor_base=C	minor_cov=71/85	new_cov=71/85	polymorphism_frequency=2.826e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=208/188	total_cov=281/274
RA	94	.	Xen14_10	512	0	G	T	bias_e_value=1614400	bias_p_value=0.325253	consensus_reject=FREQUENCY_CUTOFF	consensus_score=943.0	fisher_strand_p_value=0.155282	frequency=2.808e-01	ks_quality_p_value=0.630054	major_base=G	major_cov=210/187	major_frequency=7.192e-01	minor_base=T	minor_cov=71/84	new_cov=71/84	polymorphism_frequency=2.808e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=210/187	total_cov=281/272
RA	95	.	Xen14_10	559	1	.	T	bias_e_value=538536	bias_p_value=0.108498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=809.9	fisher_strand_p_value=0.05587	frequency=3.640e-01	ks_quality_p_value=0.405686	major_base=.	major_cov=182/150	major_frequency=6.360e-01	minor_base=T	minor_cov=87/103	new_cov=87/103	polymorphism_frequency=3.640e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=182/150	total_cov=269/253
RA	96	.	Xen14_10	560	0	A	G	bias_e_value=958638	bias_p_value=0.193136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=453.2	fisher_strand_p_value=0.0700449	frequency=3.678e-01	ks_quality_p_value=0.682368	major_base=A	major_cov=177/153	major_frequency=6.322e-01	minor_base=G	minor_cov=87/105	new_cov=87/105	polymorphism_frequency=3.678e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=177/153	total_cov=274/258
RA	97	.	Xen14_10	571	0	C	T	bias_e_value=1249030	bias_p_value=0.251642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=575.9	fisher_strand_p_value=0.0683131	frequency=3.199e-01	ks_quality_p_value=1	major_base=C	major_cov=183/155	major_frequency=6.801e-01	minor_base=T	minor_cov=72/87	new_cov=72/87	polymorphism_frequency=3.199e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=183/155	total_cov=255/242
RA	98	.	Xen14_10	572	0	C	T	bias_e_value=614875	bias_p_value=0.123878	consensus_reject=FREQUENCY_CUTOFF	consensus_score=587.2	fisher_strand_p_value=0.026822	frequency=3.159e-01	ks_quality_p_value=1	major_base=C	major_cov=186/154	major_frequency=6.841e-01	minor_base=T	minor_cov=69/88	new_cov=69/88	polymorphism_frequency=3.159e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=186/154	total_cov=255/242
RA	99	.	Xen14_10	574	0	G	A	bias_e_value=891708	bias_p_value=0.179652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=562.7	fisher_strand_p_value=0.0434297	frequency=3.225e-01	ks_quality_p_value=1	major_base=G	major_cov=182/152	major_frequency=6.775e-01	minor_base=A	minor_cov=71/88	new_cov=71/88	polymorphism_frequency=3.225e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=182/152	total_cov=253/240
RA	100	.	Xen14_10	575	0	A	G	bias_e_value=987189	bias_p_value=0.198888	consensus_reject=FREQUENCY_CUTOFF	consensus_score=529.0	fisher_strand_p_value=0.0522061	frequency=3.271e-01	ks_quality_p_value=0.952004	major_base=A	major_cov=176/149	major_frequency=6.729e-01	minor_base=G	minor_cov=70/88	new_cov=70/88	polymorphism_frequency=3.271e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=176/149	total_cov=246/237
RA	101	.	Xen14_10	610	0	C	T	bias_e_value=2957160	bias_p_value=0.595776	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.8	fisher_strand_p_value=0.291972	frequency=5.011e-01	ks_quality_p_value=0.854277	major_base=T	major_cov=105/113	major_frequency=5.011e-01	minor_base=C	minor_cov=116/101	new_cov=105/113	polymorphism_frequency=5.011e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=116/101	total_cov=223/214
RA	102	.	Xen14_10	54246	0	G	T	bias_e_value=0.0249991	bias_p_value=5.03655e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.6	fisher_strand_p_value=2.16598e-10	frequency=2.885e-01	ks_quality_p_value=1	major_base=G	major_cov=47/27	major_frequency=7.115e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.885e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=47/27	total_cov=47/61
RA	103	.	Xen14_10	72499	0	C	G	bias_e_value=2.59303e-10	bias_p_value=5.22417e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.2	fisher_strand_p_value=1.23696e-18	frequency=3.211e-01	ks_quality_p_value=1	major_base=C	major_cov=12/62	major_frequency=6.789e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.211e-01	polymorphism_score=55.9	prediction=polymorphism	ref_cov=12/62	total_cov=51/62
RA	104	.	Xen14_10	98248	0	G	C	bias_e_value=0.000361269	bias_p_value=7.27845e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.2	fisher_strand_p_value=2.63105e-12	frequency=2.990e-01	ks_quality_p_value=1	major_base=G	major_cov=49/19	major_frequency=7.010e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.990e-01	polymorphism_score=40.0	prediction=polymorphism	ref_cov=49/19	total_cov=49/64
RA	105	.	Xen14_104	5019	0	G	A	bias_e_value=1412380	bias_p_value=0.284552	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.0	fisher_strand_p_value=0.445768	frequency=5.000e-01	ks_quality_p_value=0.181686	major_base=G	major_cov=30/25	major_frequency=5.000e-01	minor_base=A	minor_cov=25/30	new_cov=25/30	polymorphism_frequency=5.000e-01	polymorphism_score=123.0	prediction=polymorphism	ref_cov=30/25	total_cov=55/55
RA	106	.	Xen14_106	4199	0	A	G	bias_e_value=39.4795	bias_p_value=7.95391e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.5	fisher_strand_p_value=5.13769e-07	frequency=2.059e-01	ks_quality_p_value=1	major_base=A	major_cov=35/46	major_frequency=7.941e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.059e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=35/46	total_cov=56/46
RA	107	.	Xen14_106	4200	0	C	G	bias_e_value=0.000661799	bias_p_value=1.33332e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.7	fisher_strand_p_value=4.93177e-12	frequency=3.152e-01	ks_quality_p_value=1	major_base=C	major_cov=17/46	major_frequency=6.848e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.152e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=17/46	total_cov=56/46
RA	108	.	Xen14_106	4201	0	C	G	bias_e_value=28.5361	bias_p_value=5.74915e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.1	fisher_strand_p_value=3.63221e-07	frequency=2.088e-01	ks_quality_p_value=1	major_base=C	major_cov=27/45	major_frequency=7.912e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.088e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=27/45	total_cov=56/46
RA	109	.	Xen14_108	130	0	T	A	bias_e_value=3796190	bias_p_value=0.764816	consensus_reject=FREQUENCY_CUTOFF	consensus_score=478.3	fisher_strand_p_value=0.404221	frequency=3.033e-01	ks_quality_p_value=0.984979	major_base=T	major_cov=116/116	major_frequency=6.967e-01	minor_base=A	minor_cov=45/56	new_cov=45/56	polymorphism_frequency=3.033e-01	polymorphism_score=281.9	prediction=polymorphism	ref_cov=116/116	total_cov=162/172
RA	110	.	Xen14_108	132	0	T	C	bias_e_value=3826240	bias_p_value=0.77087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=389.1	fisher_strand_p_value=0.404782	frequency=3.006e-01	ks_quality_p_value=1	major_base=T	major_cov=118/117	major_frequency=6.994e-01	minor_base=C	minor_cov=45/56	new_cov=45/56	polymorphism_frequency=3.006e-01	polymorphism_score=203.4	prediction=polymorphism	ref_cov=118/117	total_cov=163/173
RA	111	.	Xen14_108	133	0	G	A	bias_e_value=3591560	bias_p_value=0.723588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=382.7	fisher_strand_p_value=0.404177	frequency=3.024e-01	ks_quality_p_value=0.880568	major_base=G	major_cov=117/116	major_frequency=6.976e-01	minor_base=A	minor_cov=45/56	new_cov=45/56	polymorphism_frequency=3.024e-01	polymorphism_score=205.1	prediction=polymorphism	ref_cov=117/116	total_cov=163/173
RA	112	.	Xen14_108	139	0	G	A	bias_e_value=3236820	bias_p_value=0.65212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=392.8	fisher_strand_p_value=0.342434	frequency=2.979e-01	ks_quality_p_value=0.854303	major_base=G	major_cov=118/120	major_frequency=7.021e-01	minor_base=A	minor_cov=44/57	new_cov=44/57	polymorphism_frequency=2.979e-01	polymorphism_score=203.8	prediction=polymorphism	ref_cov=118/120	total_cov=163/177
RA	113	.	Xen14_108	144	0	C	T	bias_e_value=4602520	bias_p_value=0.927267	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.6	fisher_strand_p_value=0.643721	frequency=3.434e-01	ks_quality_p_value=0.999976	major_base=C	major_cov=102/116	major_frequency=6.566e-01	minor_base=T	minor_cov=57/57	new_cov=57/57	polymorphism_frequency=3.434e-01	polymorphism_score=236.9	prediction=polymorphism	ref_cov=102/116	total_cov=159/173
RA	114	.	Xen14_108	154	0	A	T	bias_e_value=4598030	bias_p_value=0.926362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=439.5	fisher_strand_p_value=0.641658	frequency=3.225e-01	ks_quality_p_value=1	major_base=A	major_cov=110/119	major_frequency=6.775e-01	minor_base=T	minor_cov=56/53	new_cov=56/53	polymorphism_frequency=3.225e-01	polymorphism_score=307.7	prediction=polymorphism	ref_cov=110/119	total_cov=166/172
RA	115	.	Xen14_108	181	0	G	A	bias_e_value=4411250	bias_p_value=0.888732	consensus_reject=FREQUENCY_CUTOFF	consensus_score=407.5	fisher_strand_p_value=0.57918	frequency=2.473e-01	ks_quality_p_value=0.979025	major_base=G	major_cov=110/100	major_frequency=7.527e-01	minor_base=A	minor_cov=33/36	new_cov=33/36	polymorphism_frequency=2.473e-01	polymorphism_score=130.2	prediction=polymorphism	ref_cov=110/100	total_cov=143/136
RA	116	.	Xen14_11	10	0	G	C	bias_e_value=2563830	bias_p_value=0.516533	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.2	fisher_strand_p_value=0.458944	frequency=4.286e-01	ks_quality_p_value=0.428571	major_base=G	major_cov=8/8	major_frequency=5.714e-01	minor_base=C	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=4.286e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=8/8	total_cov=12/16
RA	117	.	Xen14_11	29531	0	C	T	bias_e_value=0.000419751	bias_p_value=8.45669e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.5	fisher_strand_p_value=3.07427e-12	frequency=3.704e-01	ks_quality_p_value=1	major_base=C	major_cov=26/42	major_frequency=6.296e-01	minor_base=T	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.704e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=26/42	total_cov=84/42
RA	118	.	Xen14_11	105176	0	C	T	bias_e_value=5.19776e-07	bias_p_value=1.04719e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=3.04183e-15	frequency=2.733e-01	ks_quality_p_value=1	major_base=C	major_cov=38/79	major_frequency=7.267e-01	minor_base=T	minor_cov=43/1	new_cov=43/1	polymorphism_frequency=2.733e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=38/79	total_cov=81/80
RA	119	.	Xen14_112	3820	0	A	G	bias_e_value=62458.4	bias_p_value=0.0125834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.0	fisher_strand_p_value=0.005873	frequency=2.143e-01	ks_quality_p_value=0.290591	major_base=A	major_cov=46/31	major_frequency=7.857e-01	minor_base=G	minor_cov=5/16	new_cov=5/16	polymorphism_frequency=2.143e-01	polymorphism_score=34.7	prediction=polymorphism	ref_cov=46/31	total_cov=51/47
RA	120	.	Xen14_112	4026	0	A	G	bias_e_value=521975	bias_p_value=0.105162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.7	fisher_strand_p_value=0.234847	frequency=3.947e-01	ks_quality_p_value=0.0927803	major_base=A	major_cov=41/28	major_frequency=6.053e-01	minor_base=G	minor_cov=32/13	new_cov=32/13	polymorphism_frequency=3.947e-01	polymorphism_score=95.4	prediction=polymorphism	ref_cov=41/28	total_cov=73/41
RA	121	.	Xen14_112	4036	0	A	G	bias_e_value=1263160	bias_p_value=0.254487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.1	fisher_strand_p_value=0.183949	frequency=4.180e-01	ks_quality_p_value=0.377151	major_base=A	major_cov=41/30	major_frequency=5.820e-01	minor_base=G	minor_cov=36/15	new_cov=36/15	polymorphism_frequency=4.180e-01	polymorphism_score=110.6	prediction=polymorphism	ref_cov=41/30	total_cov=77/45
RA	122	.	Xen14_112	4044	0	A	C	bias_e_value=26367.1	bias_p_value=0.00531216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.4	fisher_strand_p_value=0.250369	frequency=4.407e-01	ks_quality_p_value=0.00253753	major_base=A	major_cov=38/28	major_frequency=5.593e-01	minor_base=C	minor_cov=36/16	new_cov=36/16	polymorphism_frequency=4.407e-01	polymorphism_score=158.5	prediction=polymorphism	ref_cov=38/28	total_cov=74/44
RA	123	.	Xen14_112	4051	0	A	G	bias_e_value=2104340	bias_p_value=0.423959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.6	fisher_strand_p_value=0.144463	frequency=4.444e-01	ks_quality_p_value=1	major_base=A	major_cov=38/32	major_frequency=5.556e-01	minor_base=G	minor_cov=38/18	new_cov=38/18	polymorphism_frequency=4.444e-01	polymorphism_score=120.6	prediction=polymorphism	ref_cov=38/32	total_cov=77/50
RA	124	.	Xen14_112	4065	0	A	G	bias_e_value=2114540	bias_p_value=0.426014	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.3	fisher_strand_p_value=0.860731	frequency=4.397e-01	ks_quality_p_value=0.169073	major_base=A	major_cov=49/30	major_frequency=5.603e-01	minor_base=G	minor_cov=40/22	new_cov=40/22	polymorphism_frequency=4.397e-01	polymorphism_score=136.7	prediction=polymorphism	ref_cov=49/30	total_cov=89/52
RA	125	.	Xen14_112	4183	0	G	A	bias_e_value=2853610	bias_p_value=0.574915	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.4	fisher_strand_p_value=0.528411	frequency=5.370e-01	ks_quality_p_value=0.4442	major_base=A	major_cov=37/50	major_frequency=5.370e-01	minor_base=G	minor_cov=36/39	new_cov=37/50	polymorphism_frequency=5.370e-01	polymorphism_score=167.8	prediction=polymorphism	ref_cov=36/39	total_cov=73/89
RA	126	.	Xen14_112	4409	0	A	G	bias_e_value=4693950	bias_p_value=0.945687	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.3	fisher_strand_p_value=0.689065	frequency=5.149e-01	ks_quality_p_value=1	major_base=G	major_cov=20/32	major_frequency=5.149e-01	minor_base=A	minor_cov=21/28	new_cov=20/32	polymorphism_frequency=5.149e-01	polymorphism_score=108.8	prediction=polymorphism	ref_cov=21/28	total_cov=41/60
RA	127	.	Xen14_117	1411	0	C	G	bias_e_value=0.523531	bias_p_value=1.05475e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.2	fisher_strand_p_value=5.25703e-09	frequency=2.286e-01	ks_quality_p_value=1	major_base=C	major_cov=11/43	major_frequency=7.714e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.286e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=11/43	total_cov=30/43
RA	128	.	Xen14_117	2703	0	A	G	bias_e_value=2.07653	bias_p_value=4.18357e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.8	fisher_strand_p_value=2.24794e-08	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=17/40	major_frequency=7.500e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.500e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=17/40	total_cov=36/40
RA	129	.	Xen14_12	56193	0	T	C	bias_e_value=18.7997	bias_p_value=3.78756e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.6	fisher_strand_p_value=2.32747e-07	frequency=2.128e-01	ks_quality_p_value=1	major_base=T	major_cov=45/29	major_frequency=7.872e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.128e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=45/29	total_cov=45/49
RA	130	.	Xen14_12	88639	0	C	G	bias_e_value=1.75865	bias_p_value=3.54313e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.2	fisher_strand_p_value=1.88603e-08	frequency=2.466e-01	ks_quality_p_value=1	major_base=C	major_cov=15/40	major_frequency=7.534e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.466e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=15/40	total_cov=38/40
RA	131	.	Xen14_122	1668	0	G	A	bias_e_value=11.4871	bias_p_value=2.31429e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.0	fisher_strand_p_value=1.37775e-07	frequency=2.130e-01	ks_quality_p_value=1	major_base=G	major_cov=48/37	major_frequency=7.870e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.130e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=48/37	total_cov=48/61
RA	132	.	Xen14_125	78	0	T	C	bias_e_value=2927870	bias_p_value=0.589875	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=0.245201	frequency=5.278e-01	ks_quality_p_value=1	major_base=C	major_cov=18/20	major_frequency=5.278e-01	minor_base=T	minor_cov=21/13	new_cov=18/20	polymorphism_frequency=5.278e-01	polymorphism_score=73.6	prediction=polymorphism	ref_cov=21/13	total_cov=39/33
RA	133	.	Xen14_125	402	0	G	A	bias_e_value=588138	bias_p_value=0.118492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.5	fisher_strand_p_value=0.523368	frequency=3.711e-01	ks_quality_p_value=0.0484265	major_base=G	major_cov=27/34	major_frequency=6.289e-01	minor_base=A	minor_cov=13/23	new_cov=13/23	polymorphism_frequency=3.711e-01	polymorphism_score=73.9	prediction=polymorphism	ref_cov=27/34	total_cov=40/57
RA	134	.	Xen14_125	612	0	C	T	bias_e_value=4917170	bias_p_value=0.990658	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=0.866465	frequency=4.965e-01	ks_quality_p_value=1	major_base=C	major_cov=37/34	major_frequency=5.035e-01	minor_base=T	minor_cov=38/32	new_cov=38/32	polymorphism_frequency=4.965e-01	polymorphism_score=155.1	prediction=polymorphism	ref_cov=37/34	total_cov=75/66
RA	135	.	Xen14_125	628	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.9	fisher_strand_p_value=1	frequency=4.853e-01	ks_quality_p_value=1	major_base=G	major_cov=37/33	major_frequency=5.147e-01	minor_base=A	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=4.853e-01	polymorphism_score=142.7	prediction=polymorphism	ref_cov=37/33	total_cov=72/64
RA	136	.	Xen14_125	874	0	C	A	bias_e_value=545071	bias_p_value=0.109815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=0.023014	frequency=4.656e-01	ks_quality_p_value=1	major_base=C	major_cov=28/42	major_frequency=5.344e-01	minor_base=A	minor_cov=37/24	new_cov=37/24	polymorphism_frequency=4.656e-01	polymorphism_score=171.0	prediction=polymorphism	ref_cov=28/42	total_cov=65/66
RA	137	.	Xen14_125	930	0	T	.	bias_e_value=4898720	bias_p_value=0.986942	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.2	fisher_strand_p_value=0.842808	frequency=4.804e-01	ks_quality_p_value=1	major_base=T	major_cov=29/24	major_frequency=5.196e-01	minor_base=.	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=4.804e-01	polymorphism_score=180.3	prediction=polymorphism	ref_cov=29/24	total_cov=54/48
RA	138	.	Xen14_125	968	0	C	T	bias_e_value=3439090	bias_p_value=0.69287	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.7	fisher_strand_p_value=0.592402	frequency=4.921e-01	ks_quality_p_value=0.55252	major_base=C	major_cov=36/28	major_frequency=5.079e-01	minor_base=T	minor_cov=31/31	new_cov=31/31	polymorphism_frequency=4.921e-01	polymorphism_score=139.9	prediction=polymorphism	ref_cov=36/28	total_cov=68/59
RA	139	.	Xen14_125	1120	0	C	T	bias_e_value=2278800	bias_p_value=0.459108	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.0	fisher_strand_p_value=0.261007	frequency=4.779e-01	ks_quality_p_value=0.625404	major_base=C	major_cov=24/35	major_frequency=5.221e-01	minor_base=T	minor_cov=28/26	new_cov=28/26	polymorphism_frequency=4.779e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=24/35	total_cov=52/61
RA	140	.	Xen14_125	1428	0	A	G	bias_e_value=3746180	bias_p_value=0.754741	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.4	fisher_strand_p_value=0.625386	frequency=4.671e-01	ks_quality_p_value=0.619407	major_base=A	major_cov=35/46	major_frequency=5.329e-01	minor_base=G	minor_cov=34/37	new_cov=34/37	polymorphism_frequency=4.671e-01	polymorphism_score=158.1	prediction=polymorphism	ref_cov=35/46	total_cov=69/83
RA	141	.	Xen14_125	1485	0	T	A	bias_e_value=665166	bias_p_value=0.13401	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.0	fisher_strand_p_value=0.0963262	frequency=3.838e-01	ks_quality_p_value=0.307935	major_base=T	major_cov=20/41	major_frequency=6.162e-01	minor_base=A	minor_cov=19/19	new_cov=19/19	polymorphism_frequency=3.838e-01	polymorphism_score=107.6	prediction=polymorphism	ref_cov=20/41	total_cov=40/60
RA	142	.	Xen14_125	1515	0	G	A	bias_e_value=982397	bias_p_value=0.197923	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.7	fisher_strand_p_value=0.130989	frequency=4.348e-01	ks_quality_p_value=0.376972	major_base=G	major_cov=22/43	major_frequency=5.652e-01	minor_base=A	minor_cov=24/26	new_cov=24/26	polymorphism_frequency=4.348e-01	polymorphism_score=106.6	prediction=polymorphism	ref_cov=22/43	total_cov=46/69
RA	143	.	Xen14_125	1698	0	A	T	bias_e_value=4900290	bias_p_value=0.987258	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.7	fisher_strand_p_value=0.84467	frequency=5.577e-01	ks_quality_p_value=1	major_base=T	major_cov=28/30	major_frequency=5.577e-01	minor_base=A	minor_cov=21/25	new_cov=28/30	polymorphism_frequency=5.577e-01	polymorphism_score=134.6	prediction=polymorphism	ref_cov=21/25	total_cov=49/56
RA	144	.	Xen14_125	1702	0	T	G	bias_e_value=4440120	bias_p_value=0.894547	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.7	fisher_strand_p_value=0.577449	frequency=5.130e-01	ks_quality_p_value=1	major_base=G	major_cov=28/31	major_frequency=5.130e-01	minor_base=T	minor_cov=30/26	new_cov=28/31	polymorphism_frequency=5.130e-01	polymorphism_score=159.5	prediction=polymorphism	ref_cov=30/26	total_cov=58/57
RA	145	.	Xen14_125	1741	0	G	A	bias_e_value=1109100	bias_p_value=0.223449	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.2	fisher_strand_p_value=0.0581071	frequency=4.911e-01	ks_quality_p_value=1	major_base=G	major_cov=35/22	major_frequency=5.089e-01	minor_base=A	minor_cov=23/32	new_cov=23/32	polymorphism_frequency=4.911e-01	polymorphism_score=124.0	prediction=polymorphism	ref_cov=35/22	total_cov=58/54
RA	146	.	Xen14_125	1742	0	A	T	bias_e_value=1538710	bias_p_value=0.310002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.2	fisher_strand_p_value=0.0913694	frequency=4.779e-01	ks_quality_p_value=1	major_base=A	major_cov=35/24	major_frequency=5.221e-01	minor_base=T	minor_cov=23/31	new_cov=23/31	polymorphism_frequency=4.779e-01	polymorphism_score=162.0	prediction=polymorphism	ref_cov=35/24	total_cov=58/55
RA	147	.	Xen14_125	1790	0	A	G	bias_e_value=671451	bias_p_value=0.135277	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.5	fisher_strand_p_value=0.111594	frequency=4.724e-01	ks_quality_p_value=0.269035	major_base=A	major_cov=41/26	major_frequency=5.276e-01	minor_base=G	minor_cov=28/32	new_cov=28/32	polymorphism_frequency=4.724e-01	polymorphism_score=133.7	prediction=polymorphism	ref_cov=41/26	total_cov=69/58
RA	148	.	Xen14_125	1884	0	C	T	bias_e_value=2181990	bias_p_value=0.439605	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.4	fisher_strand_p_value=0.493169	frequency=4.565e-01	ks_quality_p_value=0.309564	major_base=C	major_cov=36/39	major_frequency=5.435e-01	minor_base=T	minor_cov=26/37	new_cov=26/37	polymorphism_frequency=4.565e-01	polymorphism_score=138.3	prediction=polymorphism	ref_cov=36/39	total_cov=62/76
RA	149	.	Xen14_125	1947	0	T	A	bias_e_value=4578350	bias_p_value=0.922396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.2	fisher_strand_p_value=0.632858	frequency=4.785e-01	ks_quality_p_value=1	major_base=T	major_cov=33/52	major_frequency=5.215e-01	minor_base=A	minor_cov=34/44	new_cov=34/44	polymorphism_frequency=4.785e-01	polymorphism_score=236.5	prediction=polymorphism	ref_cov=33/52	total_cov=68/97
RA	150	.	Xen14_125	2035	0	A	C	bias_e_value=2939190	bias_p_value=0.592156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.0	fisher_strand_p_value=0.602428	frequency=5.903e-01	ks_quality_p_value=0.409722	major_base=C	major_cov=35/50	major_frequency=5.903e-01	minor_base=A	minor_cov=21/38	new_cov=35/50	polymorphism_frequency=5.903e-01	polymorphism_score=163.3	prediction=polymorphism	ref_cov=21/38	total_cov=57/88
RA	151	.	Xen14_125	2379	0	T	A	bias_e_value=3512440	bias_p_value=0.707649	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.340792	frequency=5.122e-01	ks_quality_p_value=1	major_base=A	major_cov=11/10	major_frequency=5.122e-01	minor_base=T	minor_cov=14/6	new_cov=11/10	polymorphism_frequency=5.122e-01	polymorphism_score=56.1	prediction=polymorphism	ref_cov=14/6	total_cov=27/21
RA	152	.	Xen14_125	2442	0	A	G	bias_e_value=4687120	bias_p_value=0.944311	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.5	fisher_strand_p_value=1	frequency=4.138e-01	ks_quality_p_value=0.685397	major_base=A	major_cov=22/12	major_frequency=5.862e-01	minor_base=G	minor_cov=15/9	new_cov=15/9	polymorphism_frequency=4.138e-01	polymorphism_score=47.1	prediction=polymorphism	ref_cov=22/12	total_cov=37/21
RA	153	.	Xen14_126	1734	0	T	C	bias_e_value=4418460	bias_p_value=0.890184	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.8	fisher_strand_p_value=0.569602	frequency=3.653e-01	ks_quality_p_value=1	major_base=T	major_cov=114/98	major_frequency=6.347e-01	minor_base=C	minor_cov=61/61	new_cov=61/61	polymorphism_frequency=3.653e-01	polymorphism_score=253.5	prediction=polymorphism	ref_cov=114/98	total_cov=175/160
RA	154	.	Xen14_126	1739	0	A	G	bias_e_value=4946710	bias_p_value=0.996609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=354.4	fisher_strand_p_value=0.918783	frequency=4.162e-01	ks_quality_p_value=1	major_base=A	major_cov=122/108	major_frequency=5.838e-01	minor_base=G	minor_cov=86/78	new_cov=86/78	polymorphism_frequency=4.162e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=122/108	total_cov=208/186
RA	155	.	Xen14_126	1768	0	C	T	bias_e_value=4716630	bias_p_value=0.950256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.9	fisher_strand_p_value=0.759317	frequency=6.003e-01	ks_quality_p_value=0.924041	major_base=T	major_cov=205/220	major_frequency=6.003e-01	minor_base=C	minor_cov=140/143	new_cov=205/220	polymorphism_frequency=6.003e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=140/143	total_cov=346/364
RA	156	.	Xen14_126	1770	0	C	T	bias_e_value=4772920	bias_p_value=0.961596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=0.758931	frequency=5.983e-01	ks_quality_p_value=0.969756	major_base=T	major_cov=204/219	major_frequency=5.983e-01	minor_base=C	minor_cov=141/143	new_cov=204/219	polymorphism_frequency=5.983e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=141/143	total_cov=346/364
RA	157	.	Xen14_126	1825	0	G	C	bias_e_value=4861660	bias_p_value=0.979475	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1067.2	fisher_strand_p_value=0.804355	frequency=7.035e-01	ks_quality_p_value=1	major_base=C	major_cov=444/434	major_frequency=7.035e-01	minor_base=G	minor_cov=184/186	new_cov=444/434	polymorphism_frequency=7.035e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=184/186	total_cov=629/622
RA	158	.	Xen14_126	1855	0	T	G	bias_e_value=4957540	bias_p_value=0.998791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2105.9	fisher_strand_p_value=0.951228	frequency=7.596e-01	ks_quality_p_value=1	major_base=G	major_cov=574/535	major_frequency=7.596e-01	minor_base=T	minor_cov=181/170	new_cov=574/535	polymorphism_frequency=7.596e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=181/170	total_cov=755/706
RA	159	.	Xen14_126	1873	0	C	T	bias_e_value=4924350	bias_p_value=0.992105	consensus_score=3145.9	fisher_strand_p_value=0.877	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=677/684	major_frequency=8.775e-01	minor_base=C	minor_cov=96/94	new_cov=677/684	polymorphism_frequency=8.775e-01	polymorphism_score=299.2	prediction=consensus	ref_cov=96/94	total_cov=773/779
RA	160	.	Xen14_126	1876	0	T	A	bias_e_value=4949340	bias_p_value=0.99714	consensus_score=3652.8	fisher_strand_p_value=0.938392	frequency=1	ks_quality_p_value=0.986076	major_base=A	major_cov=679/683	major_frequency=8.776e-01	minor_base=T	minor_cov=94/96	new_cov=679/683	polymorphism_frequency=8.776e-01	polymorphism_score=inf	prediction=consensus	ref_cov=94/96	total_cov=773/782
RA	161	.	Xen14_126	1885	0	G	T	bias_e_value=4870040	bias_p_value=0.981163	consensus_score=3682.0	fisher_strand_p_value=0.812289	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=664/668	major_frequency=8.810e-01	minor_base=G	minor_cov=88/92	new_cov=664/668	polymorphism_frequency=8.810e-01	polymorphism_score=inf	prediction=consensus	ref_cov=88/92	total_cov=754/760
RA	162	.	Xen14_126	1888	0	C	A	bias_e_value=4586410	bias_p_value=0.92402	consensus_score=3718.6	fisher_strand_p_value=0.636429	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=667/674	major_frequency=8.805e-01	minor_base=C	minor_cov=94/88	new_cov=667/674	polymorphism_frequency=8.805e-01	polymorphism_score=inf	prediction=consensus	ref_cov=94/88	total_cov=762/762
RA	163	.	Xen14_126	1897	0	T	A	bias_e_value=4953620	bias_p_value=0.998001	consensus_score=3863.3	fisher_strand_p_value=0.937446	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=677/692	major_frequency=8.815e-01	minor_base=T	minor_cov=90/94	new_cov=677/692	polymorphism_frequency=8.815e-01	polymorphism_score=inf	prediction=consensus	ref_cov=90/94	total_cov=773/786
RA	164	.	Xen14_126	1900	0	A	T	bias_e_value=3323720	bias_p_value=0.669627	consensus_score=3202.3	fisher_strand_p_value=0.307075	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=608/627	major_frequency=8.014e-01	minor_base=A	minor_cov=161/145	new_cov=608/627	polymorphism_frequency=8.014e-01	polymorphism_score=inf	prediction=consensus	ref_cov=161/145	total_cov=773/774
RA	165	.	Xen14_126	1942	0	A	G	bias_e_value=4919910	bias_p_value=0.991209	consensus_score=3454.4	fisher_strand_p_value=0.870369	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=680/662	major_frequency=8.882e-01	minor_base=A	minor_cov=84/85	new_cov=680/662	polymorphism_frequency=8.882e-01	polymorphism_score=258.1	prediction=consensus	ref_cov=84/85	total_cov=764/748
RA	166	.	Xen14_126	1945	0	T	C	bias_e_value=4919380	bias_p_value=0.991103	consensus_score=3468.2	fisher_strand_p_value=0.870129	frequency=1	ks_quality_p_value=0.999399	major_base=C	major_cov=685/662	major_frequency=8.891e-01	minor_base=T	minor_cov=84/84	new_cov=685/662	polymorphism_frequency=8.891e-01	polymorphism_score=260.1	prediction=consensus	ref_cov=84/84	total_cov=769/748
RA	167	.	Xen14_126	1951	0	A	G	bias_e_value=4557310	bias_p_value=0.918157	consensus_score=3513.0	fisher_strand_p_value=0.623736	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=686/671	major_frequency=8.904e-01	minor_base=A	minor_cov=81/86	new_cov=686/671	polymorphism_frequency=8.904e-01	polymorphism_score=254.2	prediction=consensus	ref_cov=81/86	total_cov=767/757
RA	168	.	Xen14_126	1964	0	A	G	bias_e_value=3489120	bias_p_value=0.70295	consensus_score=3078.6	fisher_strand_p_value=0.33665	frequency=1	ks_quality_p_value=0.999417	major_base=G	major_cov=604/618	major_frequency=8.729e-01	minor_base=A	minor_cov=81/97	new_cov=604/618	polymorphism_frequency=8.729e-01	polymorphism_score=287.8	prediction=consensus	ref_cov=81/97	total_cov=685/715
RA	169	.	Xen14_126	1966	0	A	T	bias_e_value=3620480	bias_p_value=0.729415	consensus_score=3546.1	fisher_strand_p_value=0.37757	frequency=1	ks_quality_p_value=0.957676	major_base=T	major_cov=602/618	major_frequency=8.733e-01	minor_base=A	minor_cov=81/96	new_cov=602/618	polymorphism_frequency=8.733e-01	polymorphism_score=inf	prediction=consensus	ref_cov=81/96	total_cov=685/715
RA	170	.	Xen14_126	1979	0	T	C	bias_e_value=458374	bias_p_value=0.0923483	consensus_score=2825.0	fisher_strand_p_value=0.0185215	frequency=1	ks_quality_p_value=0.999296	major_base=C	major_cov=556/580	major_frequency=8.659e-01	minor_base=T	minor_cov=69/107	new_cov=556/580	polymorphism_frequency=8.659e-01	polymorphism_score=286.9	prediction=consensus	ref_cov=69/107	total_cov=625/688
RA	171	.	Xen14_126	1987	0	A	G	bias_e_value=3125150	bias_p_value=0.629622	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2056.8	fisher_strand_p_value=0.274691	frequency=7.781e-01	ks_quality_p_value=1	major_base=G	major_cov=452/523	major_frequency=7.781e-01	minor_base=A	minor_cov=118/160	new_cov=452/523	polymorphism_frequency=7.781e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=118/160	total_cov=571/683
RA	172	.	Xen14_126	2023	0	G	A	bias_e_value=143708	bias_p_value=0.0289527	consensus_score=2314.8	fisher_strand_p_value=0.0045252	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=520/450	major_frequency=8.427e-01	minor_base=G	minor_cov=76/105	new_cov=520/450	polymorphism_frequency=8.427e-01	polymorphism_score=309.9	prediction=consensus	ref_cov=76/105	total_cov=599/556
RA	173	.	Xen14_126	2026	0	G	A	bias_e_value=147840	bias_p_value=0.0297852	consensus_score=2311.6	fisher_strand_p_value=0.00467991	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=522/450	major_frequency=8.416e-01	minor_base=G	minor_cov=77/106	new_cov=522/450	polymorphism_frequency=8.416e-01	polymorphism_score=314.1	prediction=consensus	ref_cov=77/106	total_cov=600/556
RA	174	.	Xen14_126	2043	0	C	A	bias_e_value=52806.9	bias_p_value=0.010639	consensus_score=2627.7	fisher_strand_p_value=0.00140596	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=504/421	major_frequency=8.379e-01	minor_base=C	minor_cov=74/105	new_cov=504/421	polymorphism_frequency=8.379e-01	polymorphism_score=inf	prediction=consensus	ref_cov=74/105	total_cov=578/527
RA	175	.	Xen14_126	2053	0	G	T	bias_e_value=2089.18	bias_p_value=0.000420905	consensus_score=2382.3	fisher_strand_p_value=3.76213e-05	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=471/382	major_frequency=8.322e-01	minor_base=G	minor_cov=65/107	new_cov=471/382	polymorphism_frequency=8.322e-01	polymorphism_score=inf	prediction=consensus	ref_cov=65/107	total_cov=537/490
RA	176	.	Xen14_126	2059	0	T	G	bias_e_value=354.539	bias_p_value=7.14287e-05	consensus_score=1966.0	fisher_strand_p_value=5.44384e-06	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=372/303	major_frequency=8.036e-01	minor_base=T	minor_cov=58/107	new_cov=372/303	polymorphism_frequency=8.036e-01	polymorphism_score=inf	prediction=consensus	ref_cov=58/107	total_cov=432/413
RA	177	.	Xen14_126	2062	0	T	C	bias_e_value=762.646	bias_p_value=0.00015365	consensus_score=1513.7	fisher_strand_p_value=1.25024e-05	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=373/305	major_frequency=8.052e-01	minor_base=T	minor_cov=59/105	new_cov=373/305	polymorphism_frequency=8.052e-01	polymorphism_score=294.5	prediction=consensus	ref_cov=59/105	total_cov=432/412
RA	178	.	Xen14_126	2063	0	C	A	bias_e_value=347.775	bias_p_value=7.0066e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1744.0	fisher_strand_p_value=5.3315e-06	frequency=7.976e-01	ks_quality_p_value=1	major_base=A	major_cov=373/305	major_frequency=7.976e-01	minor_base=C	minor_cov=61/111	new_cov=373/305	polymorphism_frequency=7.976e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/111	total_cov=434/417
RA	179	.	Xen14_126	2066	0	A	G	bias_e_value=657.758	bias_p_value=0.000132518	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1485.9	fisher_strand_p_value=1.06435e-05	frequency=7.937e-01	ks_quality_p_value=1	major_base=G	major_cov=373/308	major_frequency=7.937e-01	minor_base=A	minor_cov=64/113	new_cov=373/308	polymorphism_frequency=7.937e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/113	total_cov=438/421
RA	180	.	Xen14_126	2068	0	T	G	bias_e_value=3162.46	bias_p_value=0.000637139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1928.5	fisher_strand_p_value=5.94285e-05	frequency=7.889e-01	ks_quality_p_value=0.999009	major_base=G	major_cov=372/308	major_frequency=7.889e-01	minor_base=T	minor_cov=69/113	new_cov=372/308	polymorphism_frequency=7.889e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=69/113	total_cov=442/421
RA	181	.	Xen14_126	2071	0	G	A	bias_e_value=336.979	bias_p_value=6.7891e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=391.2	fisher_strand_p_value=5.15262e-06	frequency=5.766e-01	ks_quality_p_value=1	major_base=A	major_cov=287/210	major_frequency=5.766e-01	minor_base=G	minor_cov=153/212	new_cov=287/210	polymorphism_frequency=5.766e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=153/212	total_cov=441/424
RA	182	.	Xen14_131	849	0	C	G	bias_e_value=3640080	bias_p_value=0.733364	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.2	fisher_strand_p_value=0.365493	frequency=5.645e-01	ks_quality_p_value=1	major_base=G	major_cov=39/31	major_frequency=5.645e-01	minor_base=C	minor_cov=25/29	new_cov=39/31	polymorphism_frequency=5.645e-01	polymorphism_score=171.9	prediction=polymorphism	ref_cov=25/29	total_cov=64/60
RA	183	.	Xen14_131	852	0	T	C	bias_e_value=346893	bias_p_value=0.0698882	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.4	fisher_strand_p_value=0.372233	frequency=5.600e-01	ks_quality_p_value=0.0351916	major_base=C	major_cov=39/31	major_frequency=5.600e-01	minor_base=T	minor_cov=26/29	new_cov=39/31	polymorphism_frequency=5.600e-01	polymorphism_score=120.6	prediction=polymorphism	ref_cov=26/29	total_cov=65/60
RA	184	.	Xen14_131	870	0	G	A	bias_e_value=2624960	bias_p_value=0.528849	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.6	fisher_strand_p_value=0.685485	frequency=4.694e-01	ks_quality_p_value=0.298117	major_base=G	major_cov=23/29	major_frequency=5.306e-01	minor_base=A	minor_cov=23/23	new_cov=23/23	polymorphism_frequency=4.694e-01	polymorphism_score=100.0	prediction=polymorphism	ref_cov=23/29	total_cov=46/52
RA	185	.	Xen14_131	871	0	C	T	bias_e_value=1010790	bias_p_value=0.203644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.8	fisher_strand_p_value=0.230178	frequency=4.747e-01	ks_quality_p_value=0.222841	major_base=C	major_cov=21/31	major_frequency=5.253e-01	minor_base=T	minor_cov=25/22	new_cov=25/22	polymorphism_frequency=4.747e-01	polymorphism_score=104.0	prediction=polymorphism	ref_cov=21/31	total_cov=46/53
RA	186	.	Xen14_131	905	0	C	A	bias_e_value=3126910	bias_p_value=0.629975	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.4	fisher_strand_p_value=0.274965	frequency=5.537e-01	ks_quality_p_value=1	major_base=A	major_cov=33/34	major_frequency=5.537e-01	minor_base=C	minor_cov=21/33	new_cov=33/34	polymorphism_frequency=5.537e-01	polymorphism_score=163.9	prediction=polymorphism	ref_cov=21/33	total_cov=54/67
RA	187	.	Xen14_131	908	0	G	A	bias_e_value=2269130	bias_p_value=0.457159	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=0.353829	frequency=5.667e-01	ks_quality_p_value=0.458305	major_base=A	major_cov=33/35	major_frequency=5.667e-01	minor_base=G	minor_cov=20/32	new_cov=33/35	polymorphism_frequency=5.667e-01	polymorphism_score=108.8	prediction=polymorphism	ref_cov=20/32	total_cov=53/67
RA	188	.	Xen14_131	936	0	C	T	bias_e_value=2419700	bias_p_value=0.487495	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.7	fisher_strand_p_value=0.444546	frequency=5.088e-01	ks_quality_p_value=0.403375	major_base=T	major_cov=24/34	major_frequency=5.088e-01	minor_base=C	minor_cov=19/37	new_cov=24/34	polymorphism_frequency=5.088e-01	polymorphism_score=126.5	prediction=polymorphism	ref_cov=19/37	total_cov=43/71
RA	189	.	Xen14_131	993	0	C	T	bias_e_value=1180780	bias_p_value=0.23789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.2	fisher_strand_p_value=0.657429	frequency=3.778e-01	ks_quality_p_value=0.0962237	major_base=C	major_cov=20/36	major_frequency=6.222e-01	minor_base=T	minor_cov=14/20	new_cov=14/20	polymorphism_frequency=3.778e-01	polymorphism_score=69.4	prediction=polymorphism	ref_cov=20/36	total_cov=34/56
RA	190	.	Xen14_131	1292	0	A	G	bias_e_value=1242730	bias_p_value=0.250371	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.4	fisher_strand_p_value=0.0678402	frequency=3.962e-01	ks_quality_p_value=1	major_base=A	major_cov=19/45	major_frequency=6.038e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=3.962e-01	polymorphism_score=87.1	prediction=polymorphism	ref_cov=19/45	total_cov=39/67
RA	191	.	Xen14_131	1298	0	A	G	bias_e_value=2308860	bias_p_value=0.465164	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.6	fisher_strand_p_value=0.166595	frequency=4.595e-01	ks_quality_p_value=1	major_base=A	major_cov=17/43	major_frequency=5.405e-01	minor_base=G	minor_cov=21/30	new_cov=21/30	polymorphism_frequency=4.595e-01	polymorphism_score=112.5	prediction=polymorphism	ref_cov=17/43	total_cov=38/73
RA	192	.	Xen14_131	1352	0	G	A	bias_e_value=2352850	bias_p_value=0.474026	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.0	fisher_strand_p_value=0.316912	frequency=6.456e-01	ks_quality_p_value=0.541415	major_base=A	major_cov=45/57	major_frequency=6.456e-01	minor_base=G	minor_cov=20/36	new_cov=45/57	polymorphism_frequency=6.456e-01	polymorphism_score=115.7	prediction=polymorphism	ref_cov=20/36	total_cov=65/93
RA	193	.	Xen14_131	1358	0	C	T	bias_e_value=4205110	bias_p_value=0.847199	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.500904	frequency=6.604e-01	ks_quality_p_value=1	major_base=T	major_cov=45/60	major_frequency=6.604e-01	minor_base=C	minor_cov=20/34	new_cov=45/60	polymorphism_frequency=6.604e-01	polymorphism_score=108.7	prediction=polymorphism	ref_cov=20/34	total_cov=65/94
RA	194	.	Xen14_131	1376	0	A	G	bias_e_value=4768480	bias_p_value=0.960702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.9	fisher_strand_p_value=0.733082	frequency=6.871e-01	ks_quality_p_value=1	major_base=G	major_cov=48/64	major_frequency=6.871e-01	minor_base=A	minor_cov=20/31	new_cov=48/64	polymorphism_frequency=6.871e-01	polymorphism_score=99.9	prediction=polymorphism	ref_cov=20/31	total_cov=68/95
RA	195	.	Xen14_131	1401	0	A	C	bias_e_value=4557410	bias_p_value=0.918178	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=0.62378	frequency=7.344e-01	ks_quality_p_value=1	major_base=C	major_cov=68/73	major_frequency=7.344e-01	minor_base=A	minor_cov=22/29	new_cov=68/73	polymorphism_frequency=7.344e-01	polymorphism_score=129.2	prediction=polymorphism	ref_cov=22/29	total_cov=90/102
RA	196	.	Xen14_131	1414	0	A	C	bias_e_value=4575030	bias_p_value=0.921727	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.5	fisher_strand_p_value=0.631398	frequency=7.196e-01	ks_quality_p_value=1	major_base=C	major_cov=67/69	major_frequency=7.196e-01	minor_base=A	minor_cov=24/29	new_cov=67/69	polymorphism_frequency=7.196e-01	polymorphism_score=133.5	prediction=polymorphism	ref_cov=24/29	total_cov=91/98
RA	197	.	Xen14_131	1429	0	G	A	bias_e_value=4921150	bias_p_value=0.991461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.2	fisher_strand_p_value=0.872194	frequency=6.743e-01	ks_quality_p_value=1	major_base=A	major_cov=52/66	major_frequency=6.743e-01	minor_base=G	minor_cov=26/31	new_cov=52/66	polymorphism_frequency=6.743e-01	polymorphism_score=112.7	prediction=polymorphism	ref_cov=26/31	total_cov=79/97
RA	198	.	Xen14_131	1505	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.5	fisher_strand_p_value=1	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=55/64	major_frequency=7.000e-01	minor_base=T	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=3.000e-01	polymorphism_score=94.7	prediction=polymorphism	ref_cov=55/64	total_cov=80/92
RA	199	.	Xen14_131	1684	1	.	T	bias_e_value=69746.7	bias_p_value=0.0140518	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=0.00779115	frequency=5.545e-01	ks_quality_p_value=0.248926	major_base=T	major_cov=37/24	major_frequency=5.545e-01	minor_base=.	minor_cov=17/32	new_cov=37/24	polymorphism_frequency=5.545e-01	polymorphism_score=178.5	prediction=polymorphism	ref_cov=17/32	total_cov=54/56
RA	200	.	Xen14_131	1794	0	C	T	bias_e_value=391806	bias_p_value=0.0789368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.7	fisher_strand_p_value=0.0152245	frequency=2.706e-01	ks_quality_p_value=1	major_base=C	major_cov=30/32	major_frequency=7.294e-01	minor_base=T	minor_cov=18/5	new_cov=18/5	polymorphism_frequency=2.706e-01	polymorphism_score=41.1	prediction=polymorphism	ref_cov=30/32	total_cov=48/37
RA	201	.	Xen14_131	1818	0	A	C	bias_e_value=503439	bias_p_value=0.101428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.6	fisher_strand_p_value=0.0733619	frequency=2.838e-01	ks_quality_p_value=0.283784	major_base=A	major_cov=28/25	major_frequency=7.162e-01	minor_base=C	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=2.838e-01	polymorphism_score=55.8	prediction=polymorphism	ref_cov=28/25	total_cov=44/30
RA	202	.	Xen14_131	1828	0	C	T	bias_e_value=3139110	bias_p_value=0.632434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.0	fisher_strand_p_value=0.276874	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=30/22	major_frequency=7.222e-01	minor_base=T	minor_cov=15/5	new_cov=15/5	polymorphism_frequency=2.778e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=30/22	total_cov=45/27
RA	203	.	Xen14_131	1829	0	T	G	bias_e_value=2434640	bias_p_value=0.490506	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.8	fisher_strand_p_value=0.181076	frequency=2.917e-01	ks_quality_p_value=1	major_base=T	major_cov=29/22	major_frequency=7.083e-01	minor_base=G	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=2.917e-01	polymorphism_score=56.4	prediction=polymorphism	ref_cov=29/22	total_cov=45/27
RA	204	.	Xen14_131	1842	0	G	A	bias_e_value=1936890	bias_p_value=0.390224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.3	fisher_strand_p_value=0.400898	frequency=3.182e-01	ks_quality_p_value=0.318182	major_base=G	major_cov=28/17	major_frequency=6.818e-01	minor_base=A	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=3.182e-01	polymorphism_score=38.9	prediction=polymorphism	ref_cov=28/17	total_cov=44/22
RA	205	.	Xen14_131	1843	0	T	C	bias_e_value=1936890	bias_p_value=0.390224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.4	fisher_strand_p_value=0.400898	frequency=3.182e-01	ks_quality_p_value=0.318182	major_base=T	major_cov=28/17	major_frequency=6.818e-01	minor_base=C	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=3.182e-01	polymorphism_score=39.1	prediction=polymorphism	ref_cov=28/17	total_cov=44/22
RA	206	.	Xen14_131	1845	0	A	G	bias_e_value=1510370	bias_p_value=0.304293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.5	fisher_strand_p_value=0.275466	frequency=3.231e-01	ks_quality_p_value=0.323077	major_base=A	major_cov=27/17	major_frequency=6.769e-01	minor_base=G	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=3.231e-01	polymorphism_score=39.6	prediction=polymorphism	ref_cov=27/17	total_cov=43/22
RA	207	.	Xen14_131	1905	0	G	A	bias_e_value=3929630	bias_p_value=0.791699	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.3	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.428571	major_base=G	major_cov=15/5	major_frequency=5.714e-01	minor_base=A	minor_cov=12/3	new_cov=12/3	polymorphism_frequency=4.286e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=15/5	total_cov=27/8
RA	208	.	Xen14_132	890	0	C	T	bias_e_value=1392790	bias_p_value=0.280604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.5	fisher_strand_p_value=0.079425	frequency=2.560e-01	ks_quality_p_value=1	major_base=C	major_cov=84/70	major_frequency=7.440e-01	minor_base=T	minor_cov=21/32	new_cov=21/32	polymorphism_frequency=2.560e-01	polymorphism_score=96.2	prediction=polymorphism	ref_cov=84/70	total_cov=105/102
RA	209	.	Xen14_132	970	0	T	C	bias_e_value=543149	bias_p_value=0.109428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.9	fisher_strand_p_value=0.0251939	frequency=4.735e-01	ks_quality_p_value=0.909405	major_base=T	major_cov=73/86	major_frequency=5.265e-01	minor_base=C	minor_cov=47/96	new_cov=47/96	polymorphism_frequency=4.735e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=73/86	total_cov=120/182
RA	210	.	Xen14_132	976	0	G	A	bias_e_value=600513	bias_p_value=0.120985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.7	fisher_strand_p_value=0.0260257	frequency=4.803e-01	ks_quality_p_value=1	major_base=G	major_cov=72/86	major_frequency=5.197e-01	minor_base=A	minor_cov=48/98	new_cov=48/98	polymorphism_frequency=4.803e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=72/86	total_cov=120/184
RA	211	.	Xen14_132	988	0	G	A	bias_e_value=80783.5	bias_p_value=0.0162754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.2	fisher_strand_p_value=0.0440535	frequency=4.847e-01	ks_quality_p_value=0.0522214	major_base=G	major_cov=82/86	major_frequency=5.153e-01	minor_base=A	minor_cov=59/99	new_cov=59/99	polymorphism_frequency=4.847e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=82/86	total_cov=141/187
RA	212	.	Xen14_132	995	0	T	C	bias_e_value=1271760	bias_p_value=0.256221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.7	fisher_strand_p_value=0.0716496	frequency=4.938e-01	ks_quality_p_value=0.97736	major_base=T	major_cov=76/88	major_frequency=5.062e-01	minor_base=C	minor_cov=58/102	new_cov=58/102	polymorphism_frequency=4.938e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/88	total_cov=134/190
RA	213	.	Xen14_132	1000	0	A	T	bias_e_value=1767750	bias_p_value=0.356148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=0.112103	frequency=4.954e-01	ks_quality_p_value=0.994813	major_base=A	major_cov=73/90	major_frequency=5.046e-01	minor_base=T	minor_cov=57/103	new_cov=57/103	polymorphism_frequency=4.954e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=73/90	total_cov=130/193
RA	214	.	Xen14_132	1030	0	G	A	bias_e_value=3256230	bias_p_value=0.656031	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.8	fisher_strand_p_value=0.295739	frequency=4.651e-01	ks_quality_p_value=1	major_base=G	major_cov=73/88	major_frequency=5.349e-01	minor_base=A	minor_cov=55/85	new_cov=55/85	polymorphism_frequency=4.651e-01	polymorphism_score=314.9	prediction=polymorphism	ref_cov=73/88	total_cov=128/173
RA	215	.	Xen14_132	1032	0	T	G	bias_e_value=4377880	bias_p_value=0.882009	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.1	fisher_strand_p_value=0.555394	frequency=4.696e-01	ks_quality_p_value=1	major_base=T	major_cov=68/89	major_frequency=5.304e-01	minor_base=G	minor_cov=55/84	new_cov=55/84	polymorphism_frequency=4.696e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/89	total_cov=123/173
RA	216	.	Xen14_132	1093	0	A	C	bias_e_value=4067170	bias_p_value=0.81941	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.5	fisher_strand_p_value=0.464117	frequency=4.343e-01	ks_quality_p_value=0.997278	major_base=A	major_cov=77/78	major_frequency=5.657e-01	minor_base=C	minor_cov=53/66	new_cov=53/66	polymorphism_frequency=4.343e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=77/78	total_cov=130/145
RA	217	.	Xen14_132	1114	0	G	T	bias_e_value=3819570	bias_p_value=0.769525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.9	fisher_strand_p_value=0.403298	frequency=4.386e-01	ks_quality_p_value=1	major_base=G	major_cov=79/81	major_frequency=5.614e-01	minor_base=T	minor_cov=55/70	new_cov=55/70	polymorphism_frequency=4.386e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=79/81	total_cov=134/151
RA	218	.	Xen14_132	1118	0	T	A	bias_e_value=3449060	bias_p_value=0.694879	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.4	fisher_strand_p_value=0.331813	frequency=3.811e-01	ks_quality_p_value=0.991878	major_base=T	major_cov=87/90	major_frequency=6.189e-01	minor_base=A	minor_cov=47/62	new_cov=47/62	polymorphism_frequency=3.811e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=87/90	total_cov=135/152
RA	219	.	Xen14_132	1210	0	T	A	bias_e_value=4919780	bias_p_value=0.991183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.5	fisher_strand_p_value=0.911195	frequency=5.202e-01	ks_quality_p_value=0.954991	major_base=A	major_cov=84/83	major_frequency=5.202e-01	minor_base=T	minor_cov=76/78	new_cov=84/83	polymorphism_frequency=5.202e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/78	total_cov=162/162
RA	220	.	Xen14_132	1212	0	A	T	bias_e_value=4942700	bias_p_value=0.995802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.0	fisher_strand_p_value=0.911761	frequency=5.184e-01	ks_quality_p_value=0.997827	major_base=T	major_cov=86/83	major_frequency=5.184e-01	minor_base=A	minor_cov=78/79	new_cov=86/83	polymorphism_frequency=5.184e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=78/79	total_cov=164/162
RA	221	.	Xen14_132	1219	0	G	A	bias_e_value=4946040	bias_p_value=0.996475	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.3	fisher_strand_p_value=1	frequency=5.093e-01	ks_quality_p_value=0.917221	major_base=A	major_cov=87/78	major_frequency=5.093e-01	minor_base=G	minor_cov=83/76	new_cov=87/78	polymorphism_frequency=5.093e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=83/76	total_cov=171/154
RA	222	.	Xen14_132	1228	0	A	G	bias_e_value=4570280	bias_p_value=0.92077	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.4	fisher_strand_p_value=0.661084	frequency=4.759e-01	ks_quality_p_value=0.951961	major_base=A	major_cov=88/86	major_frequency=5.241e-01	minor_base=G	minor_cov=84/74	new_cov=84/74	polymorphism_frequency=4.759e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=88/86	total_cov=173/160
RA	223	.	Xen14_132	1234	0	T	C	bias_e_value=4445870	bias_p_value=0.895707	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.1	fisher_strand_p_value=0.579595	frequency=4.648e-01	ks_quality_p_value=0.999955	major_base=T	major_cov=86/89	major_frequency=5.352e-01	minor_base=C	minor_cov=80/72	new_cov=80/72	polymorphism_frequency=4.648e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=86/89	total_cov=166/162
RA	224	.	Xen14_132	1235	0	T	A	bias_e_value=4222160	bias_p_value=0.850635	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.7	fisher_strand_p_value=0.505909	frequency=4.587e-01	ks_quality_p_value=1	major_base=T	major_cov=86/91	major_frequency=5.413e-01	minor_base=A	minor_cov=79/71	new_cov=79/71	polymorphism_frequency=4.587e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=86/91	total_cov=166/162
RA	225	.	Xen14_132	1311	0	T	C	bias_e_value=1305660	bias_p_value=0.26305	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.0	fisher_strand_p_value=0.162265	frequency=2.581e-01	ks_quality_p_value=0.447499	major_base=T	major_cov=73/88	major_frequency=7.419e-01	minor_base=C	minor_cov=32/24	new_cov=32/24	polymorphism_frequency=2.581e-01	polymorphism_score=105.0	prediction=polymorphism	ref_cov=73/88	total_cov=105/112
RA	226	.	Xen14_132	1623	0	T	G	bias_e_value=247071	bias_p_value=0.0497771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=421.7	fisher_strand_p_value=0.196823	frequency=2.188e-01	ks_quality_p_value=0.0439888	major_base=T	major_cov=91/84	major_frequency=7.812e-01	minor_base=G	minor_cov=20/29	new_cov=20/29	polymorphism_frequency=2.188e-01	polymorphism_score=129.7	prediction=polymorphism	ref_cov=91/84	total_cov=112/113
RA	227	.	Xen14_132	1629	0	C	A	bias_e_value=61952.3	bias_p_value=0.0124815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=455.0	fisher_strand_p_value=0.258587	frequency=2.159e-01	ks_quality_p_value=0.00653804	major_base=C	major_cov=91/87	major_frequency=7.841e-01	minor_base=A	minor_cov=20/29	new_cov=20/29	polymorphism_frequency=2.159e-01	polymorphism_score=119.4	prediction=polymorphism	ref_cov=91/87	total_cov=111/116
RA	228	.	Xen14_132	1634	0	A	C	bias_e_value=3301060	bias_p_value=0.665063	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.2	fisher_strand_p_value=0.303229	frequency=2.889e-01	ks_quality_p_value=1	major_base=A	major_cov=75/85	major_frequency=7.111e-01	minor_base=C	minor_cov=36/29	new_cov=36/29	polymorphism_frequency=2.889e-01	polymorphism_score=142.8	prediction=polymorphism	ref_cov=75/85	total_cov=111/114
RA	229	.	Xen14_132	1637	0	C	T	bias_e_value=36312.3	bias_p_value=0.00731581	consensus_reject=FREQUENCY_CUTOFF	consensus_score=329.7	fisher_strand_p_value=0.19571	frequency=2.197e-01	ks_quality_p_value=0.00467451	major_base=C	major_cov=91/83	major_frequency=7.803e-01	minor_base=T	minor_cov=20/29	new_cov=20/29	polymorphism_frequency=2.197e-01	polymorphism_score=88.6	prediction=polymorphism	ref_cov=91/83	total_cov=111/112
RA	230	.	Xen14_132	1638	0	G	A	bias_e_value=283227	bias_p_value=0.0570615	consensus_reject=FREQUENCY_CUTOFF	consensus_score=346.5	fisher_strand_p_value=0.261237	frequency=2.232e-01	ks_quality_p_value=0.0391208	major_base=G	major_cov=91/83	major_frequency=7.768e-01	minor_base=A	minor_cov=21/29	new_cov=21/29	polymorphism_frequency=2.232e-01	polymorphism_score=89.3	prediction=polymorphism	ref_cov=91/83	total_cov=112/112
RA	231	.	Xen14_132	1640	0	A	T	bias_e_value=61499.7	bias_p_value=0.0123903	consensus_reject=FREQUENCY_CUTOFF	consensus_score=459.2	fisher_strand_p_value=0.196264	frequency=2.178e-01	ks_quality_p_value=0.00854144	major_base=A	major_cov=92/84	major_frequency=7.822e-01	minor_base=T	minor_cov=20/29	new_cov=20/29	polymorphism_frequency=2.178e-01	polymorphism_score=126.3	prediction=polymorphism	ref_cov=92/84	total_cov=113/113
RA	232	.	Xen14_132	1641	0	T	C	bias_e_value=463984	bias_p_value=0.0934785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.0	fisher_strand_p_value=0.341089	frequency=2.308e-01	ks_quality_p_value=0.0550949	major_base=T	major_cov=87/83	major_frequency=7.692e-01	minor_base=C	minor_cov=22/29	new_cov=22/29	polymorphism_frequency=2.308e-01	polymorphism_score=89.9	prediction=polymorphism	ref_cov=87/83	total_cov=109/112
RA	233	.	Xen14_132	1670	0	T	C	bias_e_value=1198710	bias_p_value=0.241503	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=0.116583	frequency=3.624e-01	ks_quality_p_value=0.553888	major_base=T	major_cov=107/83	major_frequency=6.376e-01	minor_base=C	minor_cov=50/58	new_cov=50/58	polymorphism_frequency=3.624e-01	polymorphism_score=225.3	prediction=polymorphism	ref_cov=107/83	total_cov=157/141
RA	234	.	Xen14_132	1719	0	T	C	bias_e_value=3536610	bias_p_value=0.712518	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.0	fisher_strand_p_value=0.376548	frequency=4.409e-01	ks_quality_p_value=0.917131	major_base=T	major_cov=76/66	major_frequency=5.591e-01	minor_base=C	minor_cov=53/59	new_cov=53/59	polymorphism_frequency=4.409e-01	polymorphism_score=250.0	prediction=polymorphism	ref_cov=76/66	total_cov=129/125
RA	235	.	Xen14_132	1729	0	C	T	bias_e_value=3183500	bias_p_value=0.641377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.2	fisher_strand_p_value=0.291201	frequency=4.249e-01	ks_quality_p_value=0.974952	major_base=C	major_cov=72/62	major_frequency=5.751e-01	minor_base=T	minor_cov=46/53	new_cov=46/53	polymorphism_frequency=4.249e-01	polymorphism_score=219.1	prediction=polymorphism	ref_cov=72/62	total_cov=118/115
RA	236	.	Xen14_133	96	0	T	G	bias_e_value=4627700	bias_p_value=0.93234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=425.6	fisher_strand_p_value=0.655464	frequency=2.614e-01	ks_quality_p_value=1	major_base=T	major_cov=103/75	major_frequency=7.386e-01	minor_base=G	minor_cov=39/24	new_cov=39/24	polymorphism_frequency=2.614e-01	polymorphism_score=171.6	prediction=polymorphism	ref_cov=103/75	total_cov=142/99
RA	237	.	Xen14_133	98	0	T	C	bias_e_value=4517660	bias_p_value=0.910168	consensus_reject=FREQUENCY_CUTOFF	consensus_score=351.4	fisher_strand_p_value=0.656152	frequency=2.603e-01	ks_quality_p_value=0.925512	major_base=T	major_cov=104/75	major_frequency=7.397e-01	minor_base=C	minor_cov=39/24	new_cov=39/24	polymorphism_frequency=2.603e-01	polymorphism_score=119.8	prediction=polymorphism	ref_cov=104/75	total_cov=143/99
RA	238	.	Xen14_133	108	0	A	G	bias_e_value=4917350	bias_p_value=0.990695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=376.5	fisher_strand_p_value=0.887884	frequency=2.614e-01	ks_quality_p_value=0.976163	major_base=A	major_cov=110/85	major_frequency=7.386e-01	minor_base=G	minor_cov=40/29	new_cov=40/29	polymorphism_frequency=2.614e-01	polymorphism_score=133.5	prediction=polymorphism	ref_cov=110/85	total_cov=150/114
RA	239	.	Xen14_133	111	0	G	A	bias_e_value=4864310	bias_p_value=0.980009	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.8	fisher_strand_p_value=0.887809	frequency=2.604e-01	ks_quality_p_value=0.908783	major_base=G	major_cov=110/86	major_frequency=7.396e-01	minor_base=A	minor_cov=40/29	new_cov=40/29	polymorphism_frequency=2.604e-01	polymorphism_score=133.2	prediction=polymorphism	ref_cov=110/86	total_cov=150/115
RA	240	.	Xen14_133	116	0	G	T	bias_e_value=4162420	bias_p_value=0.8386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=585.1	fisher_strand_p_value=0.488682	frequency=2.473e-01	ks_quality_p_value=1	major_base=G	major_cov=111/99	major_frequency=7.527e-01	minor_base=T	minor_cov=40/29	new_cov=40/29	polymorphism_frequency=2.473e-01	polymorphism_score=166.6	prediction=polymorphism	ref_cov=111/99	total_cov=151/128
RA	241	.	Xen14_133	117	0	G	A	bias_e_value=4012980	bias_p_value=0.808492	consensus_reject=FREQUENCY_CUTOFF	consensus_score=427.0	fisher_strand_p_value=0.488682	frequency=2.473e-01	ks_quality_p_value=0.918703	major_base=G	major_cov=111/99	major_frequency=7.527e-01	minor_base=A	minor_cov=40/29	new_cov=40/29	polymorphism_frequency=2.473e-01	polymorphism_score=131.4	prediction=polymorphism	ref_cov=111/99	total_cov=151/128
RA	242	.	Xen14_133	120	0	G	A	bias_e_value=3804440	bias_p_value=0.766478	consensus_reject=FREQUENCY_CUTOFF	consensus_score=433.6	fisher_strand_p_value=0.408337	frequency=2.465e-01	ks_quality_p_value=0.979482	major_base=G	major_cov=112/102	major_frequency=7.535e-01	minor_base=A	minor_cov=41/29	new_cov=41/29	polymorphism_frequency=2.465e-01	polymorphism_score=131.4	prediction=polymorphism	ref_cov=112/102	total_cov=153/131
RA	243	.	Xen14_133	126	0	G	C	bias_e_value=3979080	bias_p_value=0.801663	consensus_reject=FREQUENCY_CUTOFF	consensus_score=582.4	fisher_strand_p_value=0.441062	frequency=2.739e-01	ks_quality_p_value=0.998785	major_base=G	major_cov=116/104	major_frequency=7.261e-01	minor_base=C	minor_cov=48/35	new_cov=48/35	polymorphism_frequency=2.739e-01	polymorphism_score=248.4	prediction=polymorphism	ref_cov=116/104	total_cov=165/139
RA	244	.	Xen14_133	153	0	T	G	bias_e_value=4675420	bias_p_value=0.941954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=433.2	fisher_strand_p_value=0.69399	frequency=2.787e-01	ks_quality_p_value=0.978736	major_base=T	major_cov=108/99	major_frequency=7.213e-01	minor_base=G	minor_cov=44/36	new_cov=44/36	polymorphism_frequency=2.787e-01	polymorphism_score=223.9	prediction=polymorphism	ref_cov=108/99	total_cov=152/136
RA	245	.	Xen14_133	156	0	A	C	bias_e_value=4501150	bias_p_value=0.906843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=453.8	fisher_strand_p_value=0.600681	frequency=2.749e-01	ks_quality_p_value=1	major_base=A	major_cov=111/100	major_frequency=7.251e-01	minor_base=C	minor_cov=45/35	new_cov=45/35	polymorphism_frequency=2.749e-01	polymorphism_score=220.8	prediction=polymorphism	ref_cov=111/100	total_cov=156/135
RA	246	.	Xen14_133	171	0	C	T	bias_e_value=4222050	bias_p_value=0.850613	consensus_reject=FREQUENCY_CUTOFF	consensus_score=349.2	fisher_strand_p_value=0.51587	frequency=2.892e-01	ks_quality_p_value=0.980631	major_base=C	major_cov=101/103	major_frequency=7.108e-01	minor_base=T	minor_cov=45/38	new_cov=45/38	polymorphism_frequency=2.892e-01	polymorphism_score=163.3	prediction=polymorphism	ref_cov=101/103	total_cov=147/141
RA	247	.	Xen14_133	186	0	A	G	bias_e_value=4800380	bias_p_value=0.967128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=395.3	fisher_strand_p_value=0.795096	frequency=2.700e-01	ks_quality_p_value=0.949322	major_base=A	major_cov=106/113	major_frequency=7.300e-01	minor_base=G	minor_cov=41/40	new_cov=41/40	polymorphism_frequency=2.700e-01	polymorphism_score=158.9	prediction=polymorphism	ref_cov=106/113	total_cov=147/153
RA	248	.	Xen14_133	195	0	G	T	bias_e_value=3040220	bias_p_value=0.612511	consensus_reject=FREQUENCY_CUTOFF	consensus_score=510.5	fisher_strand_p_value=0.354851	frequency=2.680e-01	ks_quality_p_value=0.737466	major_base=G	major_cov=98/115	major_frequency=7.320e-01	minor_base=T	minor_cov=41/37	new_cov=41/37	polymorphism_frequency=2.680e-01	polymorphism_score=201.7	prediction=polymorphism	ref_cov=98/115	total_cov=139/152
RA	249	.	Xen14_133	198	0	A	G	bias_e_value=3909490	bias_p_value=0.787643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.6	fisher_strand_p_value=0.427994	frequency=2.637e-01	ks_quality_p_value=0.990236	major_base=A	major_cov=100/115	major_frequency=7.363e-01	minor_base=G	minor_cov=40/37	new_cov=40/37	polymorphism_frequency=2.637e-01	polymorphism_score=149.6	prediction=polymorphism	ref_cov=100/115	total_cov=140/152
RA	250	.	Xen14_133	1536	0	G	T	bias_e_value=4927680	bias_p_value=0.992775	consensus_reject=FREQUENCY_CUTOFF	consensus_score=659.7	fisher_strand_p_value=0.882225	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=119/109	major_frequency=8.000e-01	minor_base=T	minor_cov=31/26	new_cov=31/26	polymorphism_frequency=2.000e-01	polymorphism_score=135.2	prediction=polymorphism	ref_cov=119/109	total_cov=150/135
RA	251	.	Xen14_133	1641	0	A	G	bias_e_value=1181660	bias_p_value=0.238068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=335.9	fisher_strand_p_value=0.214722	frequency=2.400e-01	ks_quality_p_value=0.294915	major_base=A	major_cov=90/81	major_frequency=7.600e-01	minor_base=G	minor_cov=23/31	new_cov=23/31	polymorphism_frequency=2.400e-01	polymorphism_score=100.7	prediction=polymorphism	ref_cov=90/81	total_cov=114/112
RA	252	.	Xen14_133	1650	0	G	T	bias_e_value=3460050	bias_p_value=0.697094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=420.0	fisher_strand_p_value=0.331116	frequency=2.392e-01	ks_quality_p_value=1	major_base=G	major_cov=84/75	major_frequency=7.608e-01	minor_base=T	minor_cov=22/28	new_cov=22/28	polymorphism_frequency=2.392e-01	polymorphism_score=121.4	prediction=polymorphism	ref_cov=84/75	total_cov=107/103
RA	253	.	Xen14_134	279	0	T	C	bias_e_value=4564870	bias_p_value=0.91968	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.4	fisher_strand_p_value=0.626981	frequency=3.861e-01	ks_quality_p_value=1	major_base=T	major_cov=47/50	major_frequency=6.139e-01	minor_base=C	minor_cov=27/34	new_cov=27/34	polymorphism_frequency=3.861e-01	polymorphism_score=126.0	prediction=polymorphism	ref_cov=47/50	total_cov=74/84
RA	254	.	Xen14_134	342	0	A	T	bias_e_value=3615370	bias_p_value=0.728385	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.2	fisher_strand_p_value=0.632501	frequency=4.259e-01	ks_quality_p_value=0.570084	major_base=A	major_cov=38/55	major_frequency=5.741e-01	minor_base=T	minor_cov=31/38	new_cov=31/38	polymorphism_frequency=4.259e-01	polymorphism_score=203.7	prediction=polymorphism	ref_cov=38/55	total_cov=69/93
RA	255	.	Xen14_134	523	0	G	T	bias_e_value=4208900	bias_p_value=0.847964	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.502011	frequency=4.894e-01	ks_quality_p_value=1	major_base=G	major_cov=40/32	major_frequency=5.106e-01	minor_base=T	minor_cov=34/35	new_cov=34/35	polymorphism_frequency=4.894e-01	polymorphism_score=194.4	prediction=polymorphism	ref_cov=40/32	total_cov=74/67
RA	256	.	Xen14_134	572	0	C	A	bias_e_value=1997400	bias_p_value=0.402415	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.0	fisher_strand_p_value=0.243108	frequency=4.895e-01	ks_quality_p_value=0.549325	major_base=C	major_cov=42/31	major_frequency=5.105e-01	minor_base=A	minor_cov=33/37	new_cov=33/37	polymorphism_frequency=4.895e-01	polymorphism_score=201.3	prediction=polymorphism	ref_cov=42/31	total_cov=75/68
RA	257	.	Xen14_134	648	0	T	C	bias_e_value=1174750	bias_p_value=0.236677	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=0.0628213	frequency=5.086e-01	ks_quality_p_value=1	major_base=C	major_cov=24/35	major_frequency=5.086e-01	minor_base=T	minor_cov=34/23	new_cov=24/35	polymorphism_frequency=5.086e-01	polymorphism_score=126.3	prediction=polymorphism	ref_cov=34/23	total_cov=58/58
RA	258	.	Xen14_134	828	0	A	G	bias_e_value=1345740	bias_p_value=0.271125	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.2	fisher_strand_p_value=0.0757175	frequency=5.116e-01	ks_quality_p_value=1	major_base=G	major_cov=22/44	major_frequency=5.116e-01	minor_base=A	minor_cov=31/32	new_cov=22/44	polymorphism_frequency=5.116e-01	polymorphism_score=142.0	prediction=polymorphism	ref_cov=31/32	total_cov=53/76
RA	259	.	Xen14_134	839	0	A	G	bias_e_value=872377	bias_p_value=0.175757	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=0.139202	frequency=4.959e-01	ks_quality_p_value=0.303111	major_base=A	major_cov=29/32	major_frequency=5.041e-01	minor_base=G	minor_cov=20/40	new_cov=20/40	polymorphism_frequency=4.959e-01	polymorphism_score=136.3	prediction=polymorphism	ref_cov=29/32	total_cov=49/72
RA	260	.	Xen14_134	1015	0	A	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=1	frequency=5.214e-01	ks_quality_p_value=1	major_base=T	major_cov=34/39	major_frequency=5.214e-01	minor_base=A	minor_cov=31/36	new_cov=34/39	polymorphism_frequency=5.214e-01	polymorphism_score=202.2	prediction=polymorphism	ref_cov=31/36	total_cov=65/75
RA	261	.	Xen14_134	1099	0	T	G	bias_e_value=1288910	bias_p_value=0.259676	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.1	fisher_strand_p_value=0.0713312	frequency=3.085e-01	ks_quality_p_value=1	major_base=T	major_cov=24/41	major_frequency=6.915e-01	minor_base=G	minor_cov=17/12	new_cov=17/12	polymorphism_frequency=3.085e-01	polymorphism_score=79.3	prediction=polymorphism	ref_cov=24/41	total_cov=41/54
RA	262	.	Xen14_137	156	0	G	A	bias_e_value=3431510	bias_p_value=0.691343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=367.5	fisher_strand_p_value=0.327077	frequency=2.594e-01	ks_quality_p_value=0.996554	major_base=G	major_cov=98/99	major_frequency=7.406e-01	minor_base=A	minor_cov=29/40	new_cov=29/40	polymorphism_frequency=2.594e-01	polymorphism_score=130.9	prediction=polymorphism	ref_cov=98/99	total_cov=127/139
RA	263	.	Xen14_137	246	0	C	T	bias_e_value=4446130	bias_p_value=0.895758	consensus_reject=FREQUENCY_CUTOFF	consensus_score=388.9	fisher_strand_p_value=0.579664	frequency=2.556e-01	ks_quality_p_value=1	major_base=C	major_cov=107/94	major_frequency=7.444e-01	minor_base=T	minor_cov=34/35	new_cov=34/35	polymorphism_frequency=2.556e-01	polymorphism_score=130.3	prediction=polymorphism	ref_cov=107/94	total_cov=142/129
RA	264	.	Xen14_137	574	0	T	C	bias_e_value=99402.1	bias_p_value=0.0200265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=345.6	fisher_strand_p_value=0.00296472	frequency=2.510e-01	ks_quality_p_value=0.988666	major_base=T	major_cov=94/88	major_frequency=7.490e-01	minor_base=C	minor_cov=18/43	new_cov=18/43	polymorphism_frequency=2.510e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=94/88	total_cov=112/131
RA	265	.	Xen14_137	678	0	T	C	bias_e_value=1437420	bias_p_value=0.289596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=366.3	fisher_strand_p_value=0.410592	frequency=2.091e-01	ks_quality_p_value=0.202163	major_base=T	major_cov=82/92	major_frequency=7.909e-01	minor_base=C	minor_cov=25/21	new_cov=25/21	polymorphism_frequency=2.091e-01	polymorphism_score=81.8	prediction=polymorphism	ref_cov=82/92	total_cov=107/113
RA	266	.	Xen14_137	939	0	C	T	bias_e_value=2936200	bias_p_value=0.591554	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.5	fisher_strand_p_value=0.527482	frequency=2.647e-01	ks_quality_p_value=0.467121	major_base=C	major_cov=75/75	major_frequency=7.353e-01	minor_base=T	minor_cov=30/24	new_cov=30/24	polymorphism_frequency=2.647e-01	polymorphism_score=103.7	prediction=polymorphism	ref_cov=75/75	total_cov=105/100
RA	267	.	Xen14_137	942	0	C	T	bias_e_value=3945920	bias_p_value=0.794981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.2	fisher_strand_p_value=0.875838	frequency=2.692e-01	ks_quality_p_value=0.493773	major_base=C	major_cov=78/74	major_frequency=7.308e-01	minor_base=T	minor_cov=30/26	new_cov=30/26	polymorphism_frequency=2.692e-01	polymorphism_score=104.5	prediction=polymorphism	ref_cov=78/74	total_cov=108/100
RA	268	.	Xen14_137	984	0	T	C	bias_e_value=3566820	bias_p_value=0.718603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.3	fisher_strand_p_value=0.351112	frequency=2.829e-01	ks_quality_p_value=1	major_base=T	major_cov=77/70	major_frequency=7.171e-01	minor_base=C	minor_cov=35/23	new_cov=35/23	polymorphism_frequency=2.829e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=77/70	total_cov=113/93
RA	269	.	Xen14_137	1017	0	A	T	bias_e_value=1479080	bias_p_value=0.297989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.9	fisher_strand_p_value=0.0864062	frequency=3.160e-01	ks_quality_p_value=1	major_base=A	major_cov=84/74	major_frequency=6.840e-01	minor_base=T	minor_cov=48/25	new_cov=48/25	polymorphism_frequency=3.160e-01	polymorphism_score=204.1	prediction=polymorphism	ref_cov=84/74	total_cov=132/99
RA	270	.	Xen14_137	1449	0	G	C	bias_e_value=393970	bias_p_value=0.0793727	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.1	fisher_strand_p_value=0.194168	frequency=2.500e-01	ks_quality_p_value=0.0789461	major_base=G	major_cov=75/78	major_frequency=7.500e-01	minor_base=C	minor_cov=19/32	new_cov=19/32	polymorphism_frequency=2.500e-01	polymorphism_score=149.0	prediction=polymorphism	ref_cov=75/78	total_cov=95/110
RA	271	.	Xen14_138	1284	0	A	G	bias_e_value=864.77	bias_p_value=0.000174225	consensus_reject=FREQUENCY_CUTOFF	consensus_score=349.3	fisher_strand_p_value=0.0214868	frequency=7.660e-01	ks_quality_p_value=0.000667214	major_base=G	major_cov=101/79	major_frequency=7.660e-01	minor_base=A	minor_cov=21/34	new_cov=101/79	polymorphism_frequency=7.660e-01	polymorphism_score=101.2	prediction=polymorphism	ref_cov=21/34	total_cov=126/113
RA	272	.	Xen14_14	52367	0	C	T	bias_e_value=0.00583746	bias_p_value=1.17607e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.0	fisher_strand_p_value=4.74781e-11	frequency=2.239e-01	ks_quality_p_value=1	major_base=C	major_cov=39/65	major_frequency=7.761e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.239e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=39/65	total_cov=69/65
RA	273	.	Xen14_143	136	0	G	A	bias_e_value=2476090	bias_p_value=0.498855	consensus_score=1836.5	fisher_strand_p_value=0.186001	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=400/384	major_frequency=8.358e-01	minor_base=G	minor_cov=69/85	new_cov=400/384	polymorphism_frequency=8.358e-01	polymorphism_score=265.8	prediction=consensus	ref_cov=69/85	total_cov=469/469
RA	274	.	Xen14_143	155	0	G	A	bias_e_value=4910920	bias_p_value=0.9894	consensus_score=1387.3	fisher_strand_p_value=0.857976	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=324/308	major_frequency=8.030e-01	minor_base=G	minor_cov=78/77	new_cov=324/308	polymorphism_frequency=8.030e-01	polymorphism_score=277.4	prediction=consensus	ref_cov=78/77	total_cov=404/386
RA	275	.	Xen14_143	206	0	A	T	bias_e_value=4918380	bias_p_value=0.990902	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.912235	frequency=5.242e-01	ks_quality_p_value=0.951704	major_base=T	major_cov=91/82	major_frequency=5.242e-01	minor_base=A	minor_cov=84/73	new_cov=91/82	polymorphism_frequency=5.242e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=84/73	total_cov=175/155
RA	276	.	Xen14_143	216	0	C	T	bias_e_value=4207120	bias_p_value=0.847605	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.0	fisher_strand_p_value=0.521918	frequency=4.096e-01	ks_quality_p_value=0.960862	major_base=C	major_cov=73/74	major_frequency=5.904e-01	minor_base=T	minor_cov=55/47	new_cov=55/47	polymorphism_frequency=4.096e-01	polymorphism_score=220.0	prediction=polymorphism	ref_cov=73/74	total_cov=129/121
RA	277	.	Xen14_143	480	0	G	C	bias_e_value=3145060	bias_p_value=0.633633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.7	fisher_strand_p_value=0.369132	frequency=6.622e-01	ks_quality_p_value=0.752602	major_base=C	major_cov=149/147	major_frequency=6.622e-01	minor_base=G	minor_cov=83/68	new_cov=149/147	polymorphism_frequency=6.622e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=83/68	total_cov=235/216
RA	278	.	Xen14_143	498	0	C	T	bias_e_value=2913620	bias_p_value=0.587004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=407.4	fisher_strand_p_value=0.243165	frequency=7.114e-01	ks_quality_p_value=1	major_base=T	major_cov=206/223	major_frequency=7.114e-01	minor_base=C	minor_cov=93/81	new_cov=206/223	polymorphism_frequency=7.114e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=93/81	total_cov=299/304
RA	279	.	Xen14_143	501	0	C	T	bias_e_value=2656000	bias_p_value=0.535101	consensus_reject=FREQUENCY_CUTOFF	consensus_score=416.1	fisher_strand_p_value=0.208316	frequency=7.140e-01	ks_quality_p_value=1	major_base=T	major_cov=207/225	major_frequency=7.140e-01	minor_base=C	minor_cov=93/80	new_cov=207/225	polymorphism_frequency=7.140e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=93/80	total_cov=300/305
RA	280	.	Xen14_143	594	0	C	T	bias_e_value=4918680	bias_p_value=0.990962	consensus_score=2856.7	fisher_strand_p_value=0.868597	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=568/686	major_frequency=8.825e-01	minor_base=C	minor_cov=74/93	new_cov=568/686	polymorphism_frequency=8.825e-01	polymorphism_score=263.2	prediction=consensus	ref_cov=74/93	total_cov=643/779
RA	281	.	Xen14_143	630	0	A	C	bias_e_value=2765640	bias_p_value=0.557192	consensus_score=3778.4	fisher_strand_p_value=0.24026	frequency=1	ks_quality_p_value=0.926947	major_base=C	major_cov=629/676	major_frequency=8.753e-01	minor_base=A	minor_cov=81/105	new_cov=629/676	polymorphism_frequency=8.753e-01	polymorphism_score=inf	prediction=consensus	ref_cov=81/105	total_cov=711/781
RA	282	.	Xen14_143	651	0	T	G	bias_e_value=4275190	bias_p_value=0.861319	consensus_score=3677.6	fisher_strand_p_value=0.521959	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=566/678	major_frequency=8.736e-01	minor_base=T	minor_cov=77/103	new_cov=566/678	polymorphism_frequency=8.736e-01	polymorphism_score=inf	prediction=consensus	ref_cov=77/103	total_cov=643/782
RA	283	.	Xen14_143	654	0	A	C	bias_e_value=4962470	bias_p_value=0.999786	consensus_score=3626.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979375	major_base=C	major_cov=562/681	major_frequency=8.747e-01	minor_base=A	minor_cov=81/97	new_cov=562/681	polymorphism_frequency=8.747e-01	polymorphism_score=inf	prediction=consensus	ref_cov=81/97	total_cov=644/779
RA	284	.	Xen14_143	696	0	G	A	bias_e_value=4953590	bias_p_value=0.997996	consensus_score=2996.5	fisher_strand_p_value=0.937359	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=621/591	major_frequency=8.670e-01	minor_base=G	minor_cov=96/90	new_cov=621/591	polymorphism_frequency=8.670e-01	polymorphism_score=299.7	prediction=consensus	ref_cov=96/90	total_cov=720/681
RA	285	.	Xen14_143	700	0	C	G	bias_e_value=4794470	bias_p_value=0.965938	consensus_score=3503.3	fisher_strand_p_value=0.750614	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=621/592	major_frequency=8.702e-01	minor_base=C	minor_cov=95/86	new_cov=621/592	polymorphism_frequency=8.702e-01	polymorphism_score=inf	prediction=consensus	ref_cov=95/86	total_cov=720/681
RA	286	.	Xen14_143	726	0	G	A	bias_e_value=2959900	bias_p_value=0.596329	consensus_score=2913.3	fisher_strand_p_value=0.251302	frequency=1	ks_quality_p_value=0.994116	major_base=A	major_cov=608/568	major_frequency=8.731e-01	minor_base=G	minor_cov=97/74	new_cov=608/568	polymorphism_frequency=8.731e-01	polymorphism_score=273.4	prediction=consensus	ref_cov=97/74	total_cov=708/642
RA	287	.	Xen14_143	742	0	C	G	bias_e_value=3426720	bias_p_value=0.690378	consensus_score=3512.2	fisher_strand_p_value=0.328098	frequency=1	ks_quality_p_value=0.990831	major_base=G	major_cov=629/590	major_frequency=8.763e-01	minor_base=C	minor_cov=96/76	new_cov=629/590	polymorphism_frequency=8.763e-01	polymorphism_score=inf	prediction=consensus	ref_cov=96/76	total_cov=726/669
RA	288	.	Xen14_143	753	0	C	T	bias_e_value=3523090	bias_p_value=0.709795	consensus_score=3019.5	fisher_strand_p_value=0.364621	frequency=1	ks_quality_p_value=0.94013	major_base=T	major_cov=636/572	major_frequency=8.779e-01	minor_base=C	minor_cov=95/73	new_cov=636/572	polymorphism_frequency=8.779e-01	polymorphism_score=263.3	prediction=consensus	ref_cov=95/73	total_cov=731/647
RA	289	.	Xen14_143	782	0	A	G	bias_e_value=4393490	bias_p_value=0.885154	consensus_score=2312.8	fisher_strand_p_value=0.613028	frequency=1	ks_quality_p_value=0.914781	major_base=G	major_cov=513/443	major_frequency=8.520e-01	minor_base=A	minor_cov=93/73	new_cov=513/443	polymorphism_frequency=8.520e-01	polymorphism_score=278.5	prediction=consensus	ref_cov=93/73	total_cov=606/517
RA	290	.	Xen14_143	783	0	C	T	bias_e_value=3789390	bias_p_value=0.763445	consensus_score=2320.2	fisher_strand_p_value=0.396664	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=512/446	major_frequency=8.538e-01	minor_base=C	minor_cov=94/70	new_cov=512/446	polymorphism_frequency=8.538e-01	polymorphism_score=268.4	prediction=consensus	ref_cov=94/70	total_cov=607/518
RA	291	.	Xen14_143	785	0	T	A	bias_e_value=3993880	bias_p_value=0.804644	consensus_score=2757.0	fisher_strand_p_value=0.444181	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=512/446	major_frequency=8.554e-01	minor_base=T	minor_cov=92/70	new_cov=512/446	polymorphism_frequency=8.554e-01	polymorphism_score=inf	prediction=consensus	ref_cov=92/70	total_cov=605/517
RA	292	.	Xen14_143	793	0	A	G	bias_e_value=2814560	bias_p_value=0.567046	consensus_score=2722.8	fisher_strand_p_value=0.232904	frequency=1	ks_quality_p_value=0.984671	major_base=G	major_cov=561/525	major_frequency=8.730e-01	minor_base=A	minor_cov=90/68	new_cov=561/525	polymorphism_frequency=8.730e-01	polymorphism_score=254.2	prediction=consensus	ref_cov=90/68	total_cov=651/593
RA	293	.	Xen14_143	807	0	C	T	bias_e_value=1333750	bias_p_value=0.26871	consensus_score=2731.1	fisher_strand_p_value=0.0747875	frequency=1	ks_quality_p_value=0.999951	major_base=T	major_cov=536/540	major_frequency=8.827e-01	minor_base=C	minor_cov=83/60	new_cov=536/540	polymorphism_frequency=8.827e-01	polymorphism_score=224.9	prediction=consensus	ref_cov=83/60	total_cov=619/600
RA	294	.	Xen14_143	839	0	C	T	bias_e_value=876462	bias_p_value=0.17658	consensus_score=3075.7	fisher_strand_p_value=0.0424539	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=571/610	major_frequency=9.002e-01	minor_base=C	minor_cov=76/55	new_cov=571/610	polymorphism_frequency=9.002e-01	polymorphism_score=192.8	prediction=consensus	ref_cov=76/55	total_cov=647/667
RA	295	.	Xen14_143	858	0	G	A	bias_e_value=3523580	bias_p_value=0.709892	consensus_score=3035.6	fisher_strand_p_value=0.342882	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=571/582	major_frequency=9.036e-01	minor_base=G	minor_cov=67/56	new_cov=571/582	polymorphism_frequency=9.036e-01	polymorphism_score=165.1	prediction=consensus	ref_cov=67/56	total_cov=639/640
RA	296	.	Xen14_143	879	0	A	G	bias_e_value=4452470	bias_p_value=0.897036	consensus_score=2923.5	fisher_strand_p_value=0.582016	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=586/541	major_frequency=8.944e-01	minor_base=A	minor_cov=73/60	new_cov=586/541	polymorphism_frequency=8.944e-01	polymorphism_score=200.4	prediction=consensus	ref_cov=73/60	total_cov=659/601
RA	297	.	Xen14_143	915	0	C	T	bias_e_value=1243260	bias_p_value=0.250479	consensus_score=2411.7	fisher_strand_p_value=0.0678802	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=549/523	major_frequency=8.103e-01	minor_base=C	minor_cov=145/106	new_cov=549/523	polymorphism_frequency=8.103e-01	polymorphism_score=inf	prediction=consensus	ref_cov=145/106	total_cov=694/630
RA	298	.	Xen14_143	960	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_score=3080.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=657/543	major_frequency=8.929e-01	minor_base=T	minor_cov=79/65	new_cov=657/543	polymorphism_frequency=8.929e-01	polymorphism_score=214.2	prediction=consensus	ref_cov=79/65	total_cov=739/608
RA	299	.	Xen14_143	967	0	C	T	bias_e_value=4963540	bias_p_value=0.999999	consensus_score=3056.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998952	major_base=T	major_cov=644/538	major_frequency=8.955e-01	minor_base=C	minor_cov=75/63	new_cov=644/538	polymorphism_frequency=8.955e-01	polymorphism_score=210.6	prediction=consensus	ref_cov=75/63	total_cov=719/602
RA	300	.	Xen14_143	996	0	G	A	bias_e_value=4391800	bias_p_value=0.884812	consensus_score=2794.1	fisher_strand_p_value=0.564207	frequency=1	ks_quality_p_value=0.992891	major_base=A	major_cov=607/472	major_frequency=8.984e-01	minor_base=G	minor_cov=65/57	new_cov=607/472	polymorphism_frequency=8.984e-01	polymorphism_score=181.4	prediction=consensus	ref_cov=65/57	total_cov=674/529
RA	301	.	Xen14_143	1030	0	A	C	bias_e_value=4211730	bias_p_value=0.848535	consensus_score=2212.1	fisher_strand_p_value=0.502841	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=406/345	major_frequency=8.930e-01	minor_base=A	minor_cov=45/45	new_cov=406/345	polymorphism_frequency=8.930e-01	polymorphism_score=187.6	prediction=consensus	ref_cov=45/45	total_cov=455/390
RA	302	.	Xen14_147	768	0	C	T	bias_e_value=1954840	bias_p_value=0.393839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=506.4	fisher_strand_p_value=0.142457	frequency=2.535e-01	ks_quality_p_value=0.907778	major_base=C	major_cov=119/146	major_frequency=7.465e-01	minor_base=T	minor_cov=49/41	new_cov=49/41	polymorphism_frequency=2.535e-01	polymorphism_score=172.2	prediction=polymorphism	ref_cov=119/146	total_cov=168/187
RA	303	.	Xen14_147	922	0	T	C	bias_e_value=4912670	bias_p_value=0.989751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.6	fisher_strand_p_value=0.894303	frequency=3.045e-01	ks_quality_p_value=0.961965	major_base=T	major_cov=89/96	major_frequency=6.955e-01	minor_base=C	minor_cov=40/41	new_cov=40/41	polymorphism_frequency=3.045e-01	polymorphism_score=161.1	prediction=polymorphism	ref_cov=89/96	total_cov=129/137
RA	304	.	Xen14_147	930	0	C	T	bias_e_value=4160470	bias_p_value=0.838206	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.2	fisher_strand_p_value=0.677508	frequency=3.074e-01	ks_quality_p_value=0.720484	major_base=C	major_cov=85/84	major_frequency=6.926e-01	minor_base=T	minor_cov=35/40	new_cov=35/40	polymorphism_frequency=3.074e-01	polymorphism_score=149.5	prediction=polymorphism	ref_cov=85/84	total_cov=121/124
RA	305	.	Xen14_15	27494	0	C	T	bias_e_value=0.288584	bias_p_value=5.81407e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.1	fisher_strand_p_value=2.81008e-09	frequency=3.239e-01	ks_quality_p_value=1	major_base=C	major_cov=11/37	major_frequency=6.761e-01	minor_base=T	minor_cov=22/1	new_cov=22/1	polymorphism_frequency=3.239e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=11/37	total_cov=33/38
RA	306	.	Xen14_15	49175	0	G	T	bias_e_value=0.080056	bias_p_value=1.61288e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.5	fisher_strand_p_value=7.31953e-10	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=51/23	major_frequency=7.629e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.371e-01	polymorphism_score=27.8	prediction=polymorphism	ref_cov=51/23	total_cov=51/46
RA	307	.	Xen14_151	18	0	C	T	bias_e_value=970467	bias_p_value=0.195519	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.4	fisher_strand_p_value=0.0485823	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=31/35	major_frequency=7.500e-01	minor_base=T	minor_cov=16/6	new_cov=16/6	polymorphism_frequency=2.500e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=31/35	total_cov=47/41
RA	308	.	Xen14_151	933	0	C	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.1	fisher_strand_p_value=1	frequency=6.538e-01	ks_quality_p_value=1	major_base=A	major_cov=11/6	major_frequency=6.538e-01	minor_base=C	minor_cov=6/3	new_cov=11/6	polymorphism_frequency=6.538e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=6/3	total_cov=17/9
RA	309	.	Xen14_154	81	0	A	T	bias_e_value=2943650	bias_p_value=0.593055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.4	fisher_strand_p_value=0.583005	frequency=2.838e-01	ks_quality_p_value=0.424475	major_base=A	major_cov=56/50	major_frequency=7.162e-01	minor_base=T	minor_cov=25/17	new_cov=25/17	polymorphism_frequency=2.838e-01	polymorphism_score=112.7	prediction=polymorphism	ref_cov=56/50	total_cov=81/67
RA	310	.	Xen14_154	84	0	C	T	bias_e_value=1362020	bias_p_value=0.274404	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.0	fisher_strand_p_value=0.285696	frequency=2.642e-01	ks_quality_p_value=0.26949	major_base=C	major_cov=58/59	major_frequency=7.358e-01	minor_base=T	minor_cov=25/17	new_cov=25/17	polymorphism_frequency=2.642e-01	polymorphism_score=78.6	prediction=polymorphism	ref_cov=58/59	total_cov=83/76
RA	311	.	Xen14_154	93	0	A	G	bias_e_value=4525270	bias_p_value=0.911703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.2	fisher_strand_p_value=0.610368	frequency=2.857e-01	ks_quality_p_value=1	major_base=A	major_cov=59/61	major_frequency=7.143e-01	minor_base=G	minor_cov=26/22	new_cov=26/22	polymorphism_frequency=2.857e-01	polymorphism_score=91.3	prediction=polymorphism	ref_cov=59/61	total_cov=85/83
RA	312	.	Xen14_154	105	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.7	fisher_strand_p_value=1	frequency=2.789e-01	ks_quality_p_value=1	major_base=G	major_cov=66/71	major_frequency=7.211e-01	minor_base=A	minor_cov=26/27	new_cov=26/27	polymorphism_frequency=2.789e-01	polymorphism_score=99.1	prediction=polymorphism	ref_cov=66/71	total_cov=92/98
RA	313	.	Xen14_154	108	0	G	C	bias_e_value=4922560	bias_p_value=0.991744	consensus_reject=FREQUENCY_CUTOFF	consensus_score=369.5	fisher_strand_p_value=0.874285	frequency=2.741e-01	ks_quality_p_value=1	major_base=G	major_cov=71/72	major_frequency=7.259e-01	minor_base=C	minor_cov=26/28	new_cov=26/28	polymorphism_frequency=2.741e-01	polymorphism_score=157.9	prediction=polymorphism	ref_cov=71/72	total_cov=97/100
RA	314	.	Xen14_154	111	0	C	T	bias_e_value=3994570	bias_p_value=0.804782	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.2	fisher_strand_p_value=0.75145	frequency=2.634e-01	ks_quality_p_value=0.591326	major_base=C	major_cov=78/73	major_frequency=7.366e-01	minor_base=T	minor_cov=26/28	new_cov=26/28	polymorphism_frequency=2.634e-01	polymorphism_score=101.5	prediction=polymorphism	ref_cov=78/73	total_cov=104/101
RA	315	.	Xen14_154	114	0	T	C	bias_e_value=4589120	bias_p_value=0.924567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.3	fisher_strand_p_value=0.637641	frequency=2.584e-01	ks_quality_p_value=1	major_base=T	major_cov=81/74	major_frequency=7.416e-01	minor_base=C	minor_cov=26/28	new_cov=26/28	polymorphism_frequency=2.584e-01	polymorphism_score=99.3	prediction=polymorphism	ref_cov=81/74	total_cov=107/102
RA	316	.	Xen14_154	150	0	C	T	bias_e_value=3789480	bias_p_value=0.763463	consensus_reject=FREQUENCY_CUTOFF	consensus_score=372.1	fisher_strand_p_value=0.396683	frequency=2.567e-01	ks_quality_p_value=1	major_base=C	major_cov=105/89	major_frequency=7.433e-01	minor_base=T	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=2.567e-01	polymorphism_score=126.6	prediction=polymorphism	ref_cov=105/89	total_cov=137/124
RA	317	.	Xen14_154	153	0	T	A	bias_e_value=4426710	bias_p_value=0.891846	consensus_reject=FREQUENCY_CUTOFF	consensus_score=474.5	fisher_strand_p_value=0.574072	frequency=2.557e-01	ks_quality_p_value=0.997381	major_base=T	major_cov=104/91	major_frequency=7.443e-01	minor_base=A	minor_cov=33/34	new_cov=33/34	polymorphism_frequency=2.557e-01	polymorphism_score=180.0	prediction=polymorphism	ref_cov=104/91	total_cov=137/125
RA	318	.	Xen14_154	162	0	C	T	bias_e_value=2483920	bias_p_value=0.500434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.3	fisher_strand_p_value=0.225725	frequency=2.852e-01	ks_quality_p_value=0.82818	major_base=C	major_cov=102/91	major_frequency=7.148e-01	minor_base=T	minor_cov=34/43	new_cov=34/43	polymorphism_frequency=2.852e-01	polymorphism_score=150.9	prediction=polymorphism	ref_cov=102/91	total_cov=136/134
RA	319	.	Xen14_154	474	0	T	C	bias_e_value=4933390	bias_p_value=0.993925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.6	fisher_strand_p_value=0.891818	frequency=3.227e-01	ks_quality_p_value=1	major_base=T	major_cov=73/97	major_frequency=6.773e-01	minor_base=C	minor_cov=36/45	new_cov=36/45	polymorphism_frequency=3.227e-01	polymorphism_score=165.8	prediction=polymorphism	ref_cov=73/97	total_cov=110/143
RA	320	.	Xen14_156	569	0	A	G	bias_e_value=1199990	bias_p_value=0.241762	consensus_reject=FREQUENCY_CUTOFF	consensus_score=434.7	fisher_strand_p_value=0.112596	frequency=2.179e-01	ks_quality_p_value=0.574342	major_base=A	major_cov=93/90	major_frequency=7.821e-01	minor_base=G	minor_cov=19/32	new_cov=19/32	polymorphism_frequency=2.179e-01	polymorphism_score=92.0	prediction=polymorphism	ref_cov=93/90	total_cov=112/122
RA	321	.	Xen14_156	574	0	C	A	bias_e_value=1361590	bias_p_value=0.274319	consensus_reject=FREQUENCY_CUTOFF	consensus_score=525.7	fisher_strand_p_value=0.346349	frequency=2.194e-01	ks_quality_p_value=0.2222	major_base=C	major_cov=94/91	major_frequency=7.806e-01	minor_base=A	minor_cov=22/30	new_cov=22/30	polymorphism_frequency=2.194e-01	polymorphism_score=123.0	prediction=polymorphism	ref_cov=94/91	total_cov=116/121
RA	322	.	Xen14_156	605	0	A	T	bias_e_value=4742590	bias_p_value=0.955487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=537.6	fisher_strand_p_value=0.776194	frequency=2.617e-01	ks_quality_p_value=0.923565	major_base=A	major_cov=93/96	major_frequency=7.383e-01	minor_base=T	minor_cov=31/36	new_cov=31/36	polymorphism_frequency=2.617e-01	polymorphism_score=180.2	prediction=polymorphism	ref_cov=93/96	total_cov=124/134
RA	323	.	Xen14_156	611	0	A	G	bias_e_value=4667480	bias_p_value=0.940354	consensus_reject=FREQUENCY_CUTOFF	consensus_score=440.6	fisher_strand_p_value=0.675129	frequency=2.566e-01	ks_quality_p_value=1	major_base=A	major_cov=96/101	major_frequency=7.434e-01	minor_base=G	minor_cov=31/37	new_cov=31/37	polymorphism_frequency=2.566e-01	polymorphism_score=125.0	prediction=polymorphism	ref_cov=96/101	total_cov=127/138
RA	324	.	Xen14_156	620	0	T	C	bias_e_value=4926910	bias_p_value=0.992621	consensus_reject=FREQUENCY_CUTOFF	consensus_score=441.3	fisher_strand_p_value=0.881001	frequency=2.329e-01	ks_quality_p_value=1	major_base=T	major_cov=95/96	major_frequency=7.671e-01	minor_base=C	minor_cov=30/28	new_cov=30/28	polymorphism_frequency=2.329e-01	polymorphism_score=103.4	prediction=polymorphism	ref_cov=95/96	total_cov=125/124
RA	325	.	Xen14_156	623	0	C	T	bias_e_value=4920990	bias_p_value=0.991428	consensus_reject=FREQUENCY_CUTOFF	consensus_score=412.5	fisher_strand_p_value=0.880249	frequency=2.427e-01	ks_quality_p_value=0.990574	major_base=C	major_cov=90/91	major_frequency=7.573e-01	minor_base=T	minor_cov=30/28	new_cov=30/28	polymorphism_frequency=2.427e-01	polymorphism_score=105.9	prediction=polymorphism	ref_cov=90/91	total_cov=120/119
RA	326	.	Xen14_156	632	0	T	C	bias_e_value=4653010	bias_p_value=0.937439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.6	fisher_strand_p_value=0.762531	frequency=2.468e-01	ks_quality_p_value=0.875779	major_base=T	major_cov=86/91	major_frequency=7.532e-01	minor_base=C	minor_cov=30/28	new_cov=30/28	polymorphism_frequency=2.468e-01	polymorphism_score=108.2	prediction=polymorphism	ref_cov=86/91	total_cov=116/119
RA	327	.	Xen14_156	650	0	T	C	bias_e_value=2651060	bias_p_value=0.534107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=389.6	fisher_strand_p_value=0.876948	frequency=2.348e-01	ks_quality_p_value=0.236824	major_base=T	major_cov=82/94	major_frequency=7.652e-01	minor_base=C	minor_cov=26/28	new_cov=26/28	polymorphism_frequency=2.348e-01	polymorphism_score=98.9	prediction=polymorphism	ref_cov=82/94	total_cov=108/123
RA	328	.	Xen14_156	653	0	G	A	bias_e_value=4375540	bias_p_value=0.881536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=364.1	fisher_strand_p_value=0.554592	frequency=2.672e-01	ks_quality_p_value=1	major_base=G	major_cov=85/85	major_frequency=7.328e-01	minor_base=A	minor_cov=28/34	new_cov=28/34	polymorphism_frequency=2.672e-01	polymorphism_score=111.4	prediction=polymorphism	ref_cov=85/85	total_cov=113/119
RA	329	.	Xen14_156	704	0	C	T	bias_e_value=3939860	bias_p_value=0.793761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=338.4	fisher_strand_p_value=0.431013	frequency=3.063e-01	ks_quality_p_value=1	major_base=C	major_cov=105/83	major_frequency=6.937e-01	minor_base=T	minor_cov=42/41	new_cov=42/41	polymorphism_frequency=3.063e-01	polymorphism_score=160.1	prediction=polymorphism	ref_cov=105/83	total_cov=147/125
RA	330	.	Xen14_156	785	0	T	C	bias_e_value=3748530	bias_p_value=0.755213	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.5	fisher_strand_p_value=1	frequency=3.567e-01	ks_quality_p_value=0.387867	major_base=T	major_cov=69/41	major_frequency=6.433e-01	minor_base=C	minor_cov=38/23	new_cov=38/23	polymorphism_frequency=3.567e-01	polymorphism_score=125.8	prediction=polymorphism	ref_cov=69/41	total_cov=107/64
RA	331	.	Xen14_159	78	0	G	A	bias_e_value=4871290	bias_p_value=0.981416	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.9	fisher_strand_p_value=0.813508	frequency=5.405e-01	ks_quality_p_value=1	major_base=A	major_cov=15/25	major_frequency=5.405e-01	minor_base=G	minor_cov=14/20	new_cov=15/25	polymorphism_frequency=5.405e-01	polymorphism_score=70.8	prediction=polymorphism	ref_cov=14/20	total_cov=29/45
RA	332	.	Xen14_159	80	0	G	A	bias_e_value=4871290	bias_p_value=0.981416	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	fisher_strand_p_value=0.813508	frequency=5.405e-01	ks_quality_p_value=1	major_base=A	major_cov=15/25	major_frequency=5.405e-01	minor_base=G	minor_cov=14/20	new_cov=15/25	polymorphism_frequency=5.405e-01	polymorphism_score=72.4	prediction=polymorphism	ref_cov=14/20	total_cov=29/45
RA	333	.	Xen14_159	91	0	T	G	bias_e_value=3745730	bias_p_value=0.754649	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=0.387272	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=20/25	major_frequency=5.000e-01	minor_base=G	minor_cov=15/30	new_cov=15/30	polymorphism_frequency=5.000e-01	polymorphism_score=132.5	prediction=polymorphism	ref_cov=20/25	total_cov=35/55
RA	334	.	Xen14_159	338	0	T	C	bias_e_value=3097230	bias_p_value=0.623996	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.1	fisher_strand_p_value=0.56364	frequency=5.203e-01	ks_quality_p_value=0.479675	major_base=C	major_cov=42/22	major_frequency=5.203e-01	minor_base=T	minor_cov=42/17	new_cov=42/22	polymorphism_frequency=5.203e-01	polymorphism_score=133.1	prediction=polymorphism	ref_cov=42/17	total_cov=84/39
RA	335	.	Xen14_159	582	0	T	C	bias_e_value=4001250	bias_p_value=0.806129	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.2	fisher_strand_p_value=0.861733	frequency=4.923e-01	ks_quality_p_value=0.517579	major_base=T	major_cov=30/36	major_frequency=5.077e-01	minor_base=C	minor_cov=28/36	new_cov=28/36	polymorphism_frequency=4.923e-01	polymorphism_score=144.2	prediction=polymorphism	ref_cov=30/36	total_cov=58/72
RA	336	.	Xen14_16	39947	0	C	G	bias_e_value=0.190056	bias_p_value=3.82905e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.6	fisher_strand_p_value=1.81225e-09	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=9/46	major_frequency=7.857e-01	minor_base=G	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.143e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=9/46	total_cov=28/46
RA	337	.	Xen14_16	41593	0	A	C	bias_e_value=0.00227333	bias_p_value=4.58005e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.9	fisher_strand_p_value=1.77848e-11	frequency=2.614e-01	ks_quality_p_value=1	major_base=A	major_cov=15/50	major_frequency=7.386e-01	minor_base=C	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.614e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=15/50	total_cov=44/50
RA	338	.	Xen14_16	56948	0	G	C	bias_e_value=0.00123473	bias_p_value=2.48759e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.0	fisher_strand_p_value=9.4272e-12	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=53/14	major_frequency=7.528e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.472e-01	polymorphism_score=32.8	prediction=polymorphism	ref_cov=53/14	total_cov=55/46
RA	339	.	Xen14_16	56949	0	T	C	bias_e_value=0.246049	bias_p_value=4.95713e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.8	fisher_strand_p_value=2.37666e-09	frequency=2.083e-01	ks_quality_p_value=1	major_base=T	major_cov=54/22	major_frequency=7.917e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.083e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=54/22	total_cov=54/42
RA	340	.	Xen14_162	274	0	G	C	bias_e_value=2.04918e-09	bias_p_value=4.12846e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.7	fisher_strand_p_value=1.02915e-17	frequency=2.357e-01	ks_quality_p_value=1	major_base=G	major_cov=85/22	major_frequency=7.643e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.357e-01	polymorphism_score=40.9	prediction=polymorphism	ref_cov=85/22	total_cov=87/66
RA	341	.	Xen14_17	79584	0	T	A	bias_e_value=2179350	bias_p_value=0.439072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=475.6	fisher_strand_p_value=0.285993	frequency=2.305e-01	ks_quality_p_value=0.532824	major_base=T	major_cov=109/78	major_frequency=7.695e-01	minor_base=A	minor_cov=28/28	new_cov=28/28	polymorphism_frequency=2.305e-01	polymorphism_score=146.2	prediction=polymorphism	ref_cov=109/78	total_cov=138/106
RA	342	.	Xen14_17	79607	0	A	G	bias_e_value=1729920	bias_p_value=0.348526	consensus_reject=FREQUENCY_CUTOFF	consensus_score=516.5	fisher_strand_p_value=0.108071	frequency=7.319e-01	ks_quality_p_value=1	major_base=G	major_cov=360/235	major_frequency=7.319e-01	minor_base=A	minor_cov=118/100	new_cov=360/235	polymorphism_frequency=7.319e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=118/100	total_cov=482/335
RA	343	.	Xen14_17	79624	0	T	G	bias_e_value=2172370	bias_p_value=0.437665	consensus_reject=FREQUENCY_CUTOFF	consensus_score=932.6	fisher_strand_p_value=0.151656	frequency=7.606e-01	ks_quality_p_value=0.999876	major_base=G	major_cov=510/332	major_frequency=7.606e-01	minor_base=T	minor_cov=147/118	new_cov=510/332	polymorphism_frequency=7.606e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=147/118	total_cov=658/451
RA	344	.	Xen14_17	79625	0	G	A	bias_e_value=2381540	bias_p_value=0.479806	consensus_reject=FREQUENCY_CUTOFF	consensus_score=961.9	fisher_strand_p_value=0.174878	frequency=7.606e-01	ks_quality_p_value=1	major_base=A	major_cov=510/335	major_frequency=7.606e-01	minor_base=G	minor_cov=148/118	new_cov=510/335	polymorphism_frequency=7.606e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=148/118	total_cov=658/453
RA	345	.	Xen14_17	79627	0	T	C	bias_e_value=2762690	bias_p_value=0.556597	consensus_reject=FREQUENCY_CUTOFF	consensus_score=973.3	fisher_strand_p_value=0.222312	frequency=7.633e-01	ks_quality_p_value=1	major_base=C	major_cov=511/337	major_frequency=7.633e-01	minor_base=T	minor_cov=147/116	new_cov=511/337	polymorphism_frequency=7.633e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=147/116	total_cov=658/453
RA	346	.	Xen14_17	79628	0	T	G	bias_e_value=2770130	bias_p_value=0.558096	consensus_reject=FREQUENCY_CUTOFF	consensus_score=940.0	fisher_strand_p_value=0.22331	frequency=7.615e-01	ks_quality_p_value=1	major_base=G	major_cov=510/336	major_frequency=7.615e-01	minor_base=T	minor_cov=148/117	new_cov=510/336	polymorphism_frequency=7.615e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=148/117	total_cov=658/455
RA	347	.	Xen14_17	79736	0	T	C	bias_e_value=116016	bias_p_value=0.0233737	consensus_score=9522.3	fisher_strand_p_value=0.00351767	frequency=1	ks_quality_p_value=0.999062	major_base=C	major_cov=1913/1836	major_frequency=9.184e-01	minor_base=T	minor_cov=142/191	new_cov=1913/1836	polymorphism_frequency=9.184e-01	polymorphism_score=inf	prediction=consensus	ref_cov=142/191	total_cov=2055/2027
RA	348	.	Xen14_17	79802	0	T	G	bias_e_value=5175.72	bias_p_value=0.00104275	consensus_score=11398.6	fisher_strand_p_value=0.00010532	frequency=1	ks_quality_p_value=0.971904	major_base=G	major_cov=2038/1847	major_frequency=9.158e-01	minor_base=T	minor_cov=149/208	new_cov=2038/1847	polymorphism_frequency=9.158e-01	polymorphism_score=inf	prediction=consensus	ref_cov=149/208	total_cov=2194/2059
RA	349	.	Xen14_17	80371	0	G	A	bias_e_value=2474900	bias_p_value=0.498616	consensus_score=120.6	fisher_strand_p_value=0.185859	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=22/31	major_frequency=9.636e-01	minor_base=G	minor_cov=2/0	new_cov=22/31	polymorphism_frequency=9.636e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=2/0	total_cov=24/31
RA	350	.	Xen14_170	78	0	A	G	bias_e_value=299454	bias_p_value=0.0603308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.3	fisher_strand_p_value=0.0353882	frequency=3.179e-01	ks_quality_p_value=0.3091	major_base=A	major_cov=59/44	major_frequency=6.821e-01	minor_base=G	minor_cov=18/30	new_cov=18/30	polymorphism_frequency=3.179e-01	polymorphism_score=95.0	prediction=polymorphism	ref_cov=59/44	total_cov=78/74
RA	351	.	Xen14_174	36	0	T	G	bias_e_value=4317150	bias_p_value=0.869773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.9	fisher_strand_p_value=0.535218	frequency=2.480e-01	ks_quality_p_value=1	major_base=T	major_cov=50/44	major_frequency=7.520e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=2.480e-01	polymorphism_score=80.0	prediction=polymorphism	ref_cov=50/44	total_cov=64/61
RA	352	.	Xen14_176	97	0	T	C	bias_e_value=3926560	bias_p_value=0.791081	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.4	fisher_strand_p_value=1	frequency=2.278e-01	ks_quality_p_value=0.427842	major_base=T	major_cov=65/57	major_frequency=7.722e-01	minor_base=C	minor_cov=19/17	new_cov=19/17	polymorphism_frequency=2.278e-01	polymorphism_score=63.9	prediction=polymorphism	ref_cov=65/57	total_cov=84/75
RA	353	.	Xen14_176	208	0	T	C	bias_e_value=53680.4	bias_p_value=0.010815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.3	fisher_strand_p_value=0.00143639	frequency=3.143e-01	ks_quality_p_value=0.997498	major_base=T	major_cov=78/90	major_frequency=6.857e-01	minor_base=C	minor_cov=53/24	new_cov=53/24	polymorphism_frequency=3.143e-01	polymorphism_score=153.6	prediction=polymorphism	ref_cov=78/90	total_cov=131/116
RA	354	.	Xen14_176	353	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.8	fisher_strand_p_value=1	frequency=2.941e-01	ks_quality_p_value=1	major_base=C	major_cov=102/78	major_frequency=7.059e-01	minor_base=T	minor_cov=42/33	new_cov=42/33	polymorphism_frequency=2.941e-01	polymorphism_score=146.5	prediction=polymorphism	ref_cov=102/78	total_cov=144/111
RA	355	.	Xen14_176	427	0	T	C	bias_e_value=2727260	bias_p_value=0.549458	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.5	fisher_strand_p_value=0.25491	frequency=2.810e-01	ks_quality_p_value=0.853628	major_base=T	major_cov=80/94	major_frequency=7.190e-01	minor_base=C	minor_cov=37/31	new_cov=37/31	polymorphism_frequency=2.810e-01	polymorphism_score=134.5	prediction=polymorphism	ref_cov=80/94	total_cov=117/125
RA	356	.	Xen14_176	454	0	C	G	bias_e_value=2882260	bias_p_value=0.580687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=348.5	fisher_strand_p_value=0.758035	frequency=2.985e-01	ks_quality_p_value=0.314928	major_base=C	major_cov=68/73	major_frequency=7.015e-01	minor_base=G	minor_cov=31/29	new_cov=31/29	polymorphism_frequency=2.985e-01	polymorphism_score=180.4	prediction=polymorphism	ref_cov=68/73	total_cov=99/102
RA	357	.	Xen14_176	493	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.0	fisher_strand_p_value=1	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=43/47	major_frequency=7.143e-01	minor_base=T	minor_cov=17/19	new_cov=17/19	polymorphism_frequency=2.857e-01	polymorphism_score=68.2	prediction=polymorphism	ref_cov=43/47	total_cov=61/66
RA	358	.	Xen14_18	586	0	A	C	bias_e_value=1137490	bias_p_value=0.22917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.1	fisher_strand_p_value=0.412618	frequency=2.717e-01	ks_quality_p_value=0.145728	major_base=A	major_cov=63/71	major_frequency=7.283e-01	minor_base=C	minor_cov=27/23	new_cov=27/23	polymorphism_frequency=2.717e-01	polymorphism_score=139.3	prediction=polymorphism	ref_cov=63/71	total_cov=90/94
RA	359	.	Xen14_18	44420	0	C	T	bias_e_value=0.000678444	bias_p_value=1.36686e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.1	fisher_strand_p_value=5.06064e-12	frequency=2.867e-01	ks_quality_p_value=1	major_base=C	major_cov=49/58	major_frequency=7.133e-01	minor_base=T	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=2.867e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=49/58	total_cov=99/58
RA	360	.	Xen14_18	62060	0	G	A	bias_e_value=0.0301429	bias_p_value=6.07286e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.6	fisher_strand_p_value=2.6338e-10	frequency=2.302e-01	ks_quality_p_value=1	major_base=G	major_cov=68/39	major_frequency=7.698e-01	minor_base=A	minor_cov=1/31	new_cov=1/31	polymorphism_frequency=2.302e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=68/39	total_cov=69/72
RA	361	.	Xen14_182	78	0	A	G	bias_e_value=2391170	bias_p_value=0.481747	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.7	fisher_strand_p_value=0.175992	frequency=3.843e-01	ks_quality_p_value=1	major_base=A	major_cov=62/79	major_frequency=6.157e-01	minor_base=G	minor_cov=47/41	new_cov=47/41	polymorphism_frequency=3.843e-01	polymorphism_score=183.4	prediction=polymorphism	ref_cov=62/79	total_cov=109/120
RA	362	.	Xen14_182	96	0	A	G	bias_e_value=3576460	bias_p_value=0.720546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.8	fisher_strand_p_value=0.352972	frequency=3.440e-01	ks_quality_p_value=1	major_base=A	major_cov=77/87	major_frequency=6.560e-01	minor_base=G	minor_cov=46/40	new_cov=46/40	polymorphism_frequency=3.440e-01	polymorphism_score=179.5	prediction=polymorphism	ref_cov=77/87	total_cov=123/127
RA	363	.	Xen14_182	145	0	T	C	bias_e_value=3850290	bias_p_value=0.775714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=440.1	fisher_strand_p_value=0.414048	frequency=2.500e-01	ks_quality_p_value=0.990654	major_base=T	major_cov=96/117	major_frequency=7.500e-01	minor_base=C	minor_cov=36/35	new_cov=36/35	polymorphism_frequency=2.500e-01	polymorphism_score=134.8	prediction=polymorphism	ref_cov=96/117	total_cov=133/152
RA	364	.	Xen14_182	146	0	A	G	bias_e_value=3856650	bias_p_value=0.776996	consensus_reject=FREQUENCY_CUTOFF	consensus_score=442.2	fisher_strand_p_value=0.412597	frequency=2.526e-01	ks_quality_p_value=0.997631	major_base=A	major_cov=96/117	major_frequency=7.474e-01	minor_base=G	minor_cov=37/35	new_cov=37/35	polymorphism_frequency=2.526e-01	polymorphism_score=137.5	prediction=polymorphism	ref_cov=96/117	total_cov=133/152
RA	365	.	Xen14_184	137	0	G	A	bias_e_value=4929610	bias_p_value=0.993165	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2014.8	fisher_strand_p_value=0.885381	frequency=2.075e-01	ks_quality_p_value=1	major_base=G	major_cov=426/506	major_frequency=7.925e-01	minor_base=A	minor_cov=113/131	new_cov=113/131	polymorphism_frequency=2.075e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=426/506	total_cov=542/638
RA	366	.	Xen14_185	394	0	C	T	bias_e_value=4136380	bias_p_value=0.833353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.9	fisher_strand_p_value=0.481431	frequency=4.034e-01	ks_quality_p_value=1	major_base=C	major_cov=142/105	major_frequency=5.966e-01	minor_base=T	minor_cov=90/77	new_cov=90/77	polymorphism_frequency=4.034e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=142/105	total_cov=232/182
RA	367	.	Xen14_19	11376	0	T	G	bias_e_value=0.00472934	bias_p_value=9.52816e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.7	fisher_strand_p_value=3.81278e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=T	major_cov=63/29	major_frequency=7.797e-01	minor_base=G	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.203e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=63/29	total_cov=64/55
RA	368	.	Xen14_19	20736	0	G	A	bias_e_value=0.000122497	bias_p_value=2.46793e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.8	fisher_strand_p_value=8.57369e-13	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=79/33	major_frequency=8.000e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.000e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=79/33	total_cov=79/61
RA	369	.	Xen14_19	47521	0	G	A	bias_e_value=0.000136853	bias_p_value=2.75718e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.5	fisher_strand_p_value=9.61691e-13	frequency=2.089e-01	ks_quality_p_value=1	major_base=G	major_cov=80/45	major_frequency=7.911e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.089e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=80/45	total_cov=80/81
RA	370	.	Xen14_19	57512	0	A	.	bias_e_value=526063	bias_p_value=0.105985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.3	fisher_strand_p_value=0.18848	frequency=4.947e-01	ks_quality_p_value=0.116748	major_base=A	major_cov=40/55	major_frequency=5.053e-01	minor_base=.	minor_cov=49/44	new_cov=49/44	polymorphism_frequency=4.947e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=40/55	total_cov=89/99
RA	371	.	Xen14_19	57809	0	T	.	consensus_score=46.2	frequency=1	major_base=.	major_cov=5/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/7
RA	372	.	Xen14_191	160	0	T	C	bias_e_value=4963530	bias_p_value=0.999999	consensus_reject=FREQUENCY_CUTOFF	consensus_score=459.0	fisher_strand_p_value=1	frequency=7.971e-01	ks_quality_p_value=0.998307	major_base=C	major_cov=134/141	major_frequency=7.971e-01	minor_base=T	minor_cov=34/36	new_cov=134/141	polymorphism_frequency=7.971e-01	polymorphism_score=122.6	prediction=polymorphism	ref_cov=34/36	total_cov=168/177
RA	373	.	Xen14_191	220	0	A	G	bias_e_value=4936870	bias_p_value=0.994628	consensus_score=1394.9	fisher_strand_p_value=0.898149	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=280/316	major_frequency=8.976e-01	minor_base=A	minor_cov=31/37	new_cov=280/316	polymorphism_frequency=8.976e-01	polymorphism_score=99.8	prediction=consensus	ref_cov=31/37	total_cov=312/355
RA	374	.	Xen14_191	221	0	C	A	bias_e_value=4962870	bias_p_value=0.999865	consensus_score=1566.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983624	major_base=A	major_cov=280/318	major_frequency=8.992e-01	minor_base=C	minor_cov=31/36	new_cov=280/318	polymorphism_frequency=8.992e-01	polymorphism_score=155.2	prediction=consensus	ref_cov=31/36	total_cov=313/355
RA	375	.	Xen14_191	226	0	A	G	bias_e_value=4963320	bias_p_value=0.999957	consensus_score=1381.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990748	major_base=G	major_cov=278/317	major_frequency=8.894e-01	minor_base=A	minor_cov=34/40	new_cov=278/317	polymorphism_frequency=8.894e-01	polymorphism_score=112.8	prediction=consensus	ref_cov=34/40	total_cov=314/358
RA	376	.	Xen14_191	227	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_score=1383.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=279/318	major_frequency=8.910e-01	minor_base=G	minor_cov=34/39	new_cov=279/318	polymorphism_frequency=8.910e-01	polymorphism_score=108.7	prediction=consensus	ref_cov=34/39	total_cov=314/357
RA	377	.	Xen14_191	229	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_score=1384.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=280/318	major_frequency=8.886e-01	minor_base=C	minor_cov=35/40	new_cov=280/318	polymorphism_frequency=8.886e-01	polymorphism_score=111.5	prediction=consensus	ref_cov=35/40	total_cov=315/359
RA	378	.	Xen14_191	251	0	A	G	bias_e_value=4941170	bias_p_value=0.995493	consensus_score=1869.1	fisher_strand_p_value=0.906572	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=342/426	major_frequency=9.057e-01	minor_base=A	minor_cov=35/45	new_cov=342/426	polymorphism_frequency=9.057e-01	polymorphism_score=113.4	prediction=consensus	ref_cov=35/45	total_cov=377/472
RA	379	.	Xen14_191	268	0	A	G	bias_e_value=4094810	bias_p_value=0.824979	consensus_score=1984.0	fisher_strand_p_value=0.482384	frequency=1	ks_quality_p_value=0.974652	major_base=G	major_cov=349/447	major_frequency=9.076e-01	minor_base=A	minor_cov=39/42	new_cov=349/447	polymorphism_frequency=9.076e-01	polymorphism_score=114.3	prediction=consensus	ref_cov=39/42	total_cov=389/492
RA	380	.	Xen14_191	275	0	A	G	bias_e_value=4940540	bias_p_value=0.995366	consensus_score=1978.4	fisher_strand_p_value=0.905285	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=338/446	major_frequency=9.095e-01	minor_base=A	minor_cov=33/45	new_cov=338/446	polymorphism_frequency=9.095e-01	polymorphism_score=110.1	prediction=consensus	ref_cov=33/45	total_cov=371/491
RA	381	.	Xen14_191	292	0	T	C	bias_e_value=4940800	bias_p_value=0.99542	consensus_score=2017.6	fisher_strand_p_value=0.905829	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=324/451	major_frequency=9.064e-01	minor_base=T	minor_cov=34/46	new_cov=324/451	polymorphism_frequency=9.064e-01	polymorphism_score=114.0	prediction=consensus	ref_cov=34/46	total_cov=360/498
RA	382	.	Xen14_191	310	0	G	A	bias_e_value=4764840	bias_p_value=0.959969	consensus_score=1976.8	fisher_strand_p_value=0.735728	frequency=1	ks_quality_p_value=0.993212	major_base=A	major_cov=329/436	major_frequency=8.958e-01	minor_base=G	minor_cov=40/49	new_cov=329/436	polymorphism_frequency=8.958e-01	polymorphism_score=134.1	prediction=consensus	ref_cov=40/49	total_cov=369/485
RA	383	.	Xen14_191	334	0	T	A	bias_e_value=4963520	bias_p_value=0.999997	consensus_score=1949.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997364	major_base=A	major_cov=307/361	major_frequency=9.003e-01	minor_base=T	minor_cov=34/40	new_cov=307/361	polymorphism_frequency=9.003e-01	polymorphism_score=165.7	prediction=consensus	ref_cov=34/40	total_cov=343/403
RA	384	.	Xen14_191	358	0	G	A	bias_e_value=4835960	bias_p_value=0.974297	consensus_score=1351.8	fisher_strand_p_value=0.897771	frequency=1	ks_quality_p_value=0.871059	major_base=A	major_cov=245/287	major_frequency=8.867e-01	minor_base=G	minor_cov=32/36	new_cov=245/287	polymorphism_frequency=8.867e-01	polymorphism_score=105.9	prediction=consensus	ref_cov=32/36	total_cov=278/323
RA	385	.	Xen14_191	370	0	A	C	bias_e_value=4772790	bias_p_value=0.961571	consensus_score=1416.2	fisher_strand_p_value=0.784564	frequency=1	ks_quality_p_value=0.937968	major_base=C	major_cov=231/255	major_frequency=8.901e-01	minor_base=A	minor_cov=30/30	new_cov=231/255	polymorphism_frequency=8.901e-01	polymorphism_score=127.7	prediction=consensus	ref_cov=30/30	total_cov=262/288
RA	386	.	Xen14_193	156	0	C	T	bias_e_value=2475510	bias_p_value=0.498738	consensus_reject=FREQUENCY_CUTOFF	consensus_score=609.4	fisher_strand_p_value=0.205428	frequency=2.457e-01	ks_quality_p_value=0.905093	major_base=C	major_cov=177/133	major_frequency=7.543e-01	minor_base=T	minor_cov=50/51	new_cov=50/51	polymorphism_frequency=2.457e-01	polymorphism_score=192.9	prediction=polymorphism	ref_cov=177/133	total_cov=227/184
RA	387	.	Xen14_193	361	0	C	T	bias_e_value=4853670	bias_p_value=0.977865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=559.4	fisher_strand_p_value=0.797113	frequency=2.241e-01	ks_quality_p_value=1	major_base=C	major_cov=131/139	major_frequency=7.759e-01	minor_base=T	minor_cov=36/42	new_cov=36/42	polymorphism_frequency=2.241e-01	polymorphism_score=142.9	prediction=polymorphism	ref_cov=131/139	total_cov=167/181
RA	388	.	Xen14_195	206	0	C	T	bias_e_value=1815400	bias_p_value=0.365748	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.4	fisher_strand_p_value=0.249375	frequency=2.222e-01	ks_quality_p_value=0.464911	major_base=C	major_cov=44/40	major_frequency=7.778e-01	minor_base=T	minor_cov=9/15	new_cov=9/15	polymorphism_frequency=2.222e-01	polymorphism_score=39.3	prediction=polymorphism	ref_cov=44/40	total_cov=53/56
RA	389	.	Xen14_195	224	0	A	G	bias_e_value=2892780	bias_p_value=0.582805	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.7	fisher_strand_p_value=0.49646	frequency=2.273e-01	ks_quality_p_value=0.483843	major_base=A	major_cov=42/43	major_frequency=7.727e-01	minor_base=G	minor_cov=10/15	new_cov=10/15	polymorphism_frequency=2.273e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=42/43	total_cov=52/58
RA	390	.	Xen14_195	272	0	A	G	bias_e_value=753798	bias_p_value=0.151867	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.7	fisher_strand_p_value=0.649381	frequency=2.381e-01	ks_quality_p_value=0.053683	major_base=A	major_cov=37/43	major_frequency=7.619e-01	minor_base=G	minor_cov=10/15	new_cov=10/15	polymorphism_frequency=2.381e-01	polymorphism_score=44.0	prediction=polymorphism	ref_cov=37/43	total_cov=47/58
RA	391	.	Xen14_195	275	0	C	G	bias_e_value=3182210	bias_p_value=0.641118	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.6	fisher_strand_p_value=0.817874	frequency=2.381e-01	ks_quality_p_value=0.346877	major_base=C	major_cov=36/44	major_frequency=7.619e-01	minor_base=G	minor_cov=10/15	new_cov=10/15	polymorphism_frequency=2.381e-01	polymorphism_score=69.7	prediction=polymorphism	ref_cov=36/44	total_cov=46/59
RA	392	.	Xen14_195	323	0	G	T	bias_e_value=2388400	bias_p_value=0.481188	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.4	fisher_strand_p_value=0.629489	frequency=2.791e-01	ks_quality_p_value=0.27907	major_base=G	major_cov=28/34	major_frequency=7.209e-01	minor_base=T	minor_cov=9/15	new_cov=9/15	polymorphism_frequency=2.791e-01	polymorphism_score=59.3	prediction=polymorphism	ref_cov=28/34	total_cov=37/49
RA	393	.	Xen14_195	341	0	T	C	bias_e_value=681187	bias_p_value=0.137238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.4	fisher_strand_p_value=0.393941	frequency=2.319e-01	ks_quality_p_value=0.0776355	major_base=T	major_cov=24/29	major_frequency=7.681e-01	minor_base=C	minor_cov=5/11	new_cov=5/11	polymorphism_frequency=2.319e-01	polymorphism_score=26.2	prediction=polymorphism	ref_cov=24/29	total_cov=29/40
RA	394	.	Xen14_2	58921	0	C	T	bias_e_value=21802.2	bias_p_value=0.00439246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.7	fisher_strand_p_value=0.000512124	frequency=2.647e-01	ks_quality_p_value=1	major_base=C	major_cov=24/26	major_frequency=7.353e-01	minor_base=T	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.647e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=24/26	total_cov=42/27
RA	395	.	Xen14_2	147889	0	C	G	bias_e_value=187.274	bias_p_value=3.773e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.8	fisher_strand_p_value=2.73198e-06	frequency=2.535e-01	ks_quality_p_value=1	major_base=C	major_cov=21/32	major_frequency=7.465e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.535e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=21/32	total_cov=44/32
RA	396	.	Xen14_202	78	0	A	G	bias_e_value=249796	bias_p_value=0.0503262	consensus_score=1348.7	fisher_strand_p_value=0.00926254	frequency=1	ks_quality_p_value=0.94723	major_base=G	major_cov=263/229	major_frequency=9.407e-01	minor_base=A	minor_cov=9/22	new_cov=263/229	polymorphism_frequency=9.407e-01	polymorphism_score=35.9	prediction=consensus	ref_cov=9/22	total_cov=272/251
RA	397	.	Xen14_202	105	0	G	A	bias_e_value=666342	bias_p_value=0.134247	consensus_score=1829.7	fisher_strand_p_value=0.0302885	frequency=1	ks_quality_p_value=0.981547	major_base=A	major_cov=356/317	major_frequency=9.373e-01	minor_base=G	minor_cov=16/29	new_cov=356/317	polymorphism_frequency=9.373e-01	polymorphism_score=55.1	prediction=consensus	ref_cov=16/29	total_cov=372/346
RA	398	.	Xen14_202	109	0	A	T	bias_e_value=771884	bias_p_value=0.155511	consensus_score=1952.8	fisher_strand_p_value=0.0374138	frequency=1	ks_quality_p_value=0.960912	major_base=T	major_cov=354/316	major_frequency=9.318e-01	minor_base=A	minor_cov=18/31	new_cov=354/316	polymorphism_frequency=9.318e-01	polymorphism_score=99.8	prediction=consensus	ref_cov=18/31	total_cov=374/348
RA	399	.	Xen14_202	126	0	C	G	bias_e_value=2768310	bias_p_value=0.557728	consensus_score=2316.1	fisher_strand_p_value=0.224787	frequency=1	ks_quality_p_value=0.992342	major_base=G	major_cov=404/386	major_frequency=9.305e-01	minor_base=C	minor_cov=25/34	new_cov=404/386	polymorphism_frequency=9.305e-01	polymorphism_score=136.7	prediction=consensus	ref_cov=25/34	total_cov=429/422
RA	400	.	Xen14_202	134	0	C	T	bias_e_value=2426500	bias_p_value=0.488865	consensus_score=2164.1	fisher_strand_p_value=0.235697	frequency=1	ks_quality_p_value=0.764188	major_base=T	major_cov=419/388	major_frequency=9.287e-01	minor_base=C	minor_cov=27/35	new_cov=419/388	polymorphism_frequency=9.287e-01	polymorphism_score=82.5	prediction=consensus	ref_cov=27/35	total_cov=446/424
RA	401	.	Xen14_202	140	0	G	A	bias_e_value=2060780	bias_p_value=0.415184	consensus_score=2148.3	fisher_strand_p_value=0.139963	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=428/368	major_frequency=9.299e-01	minor_base=G	minor_cov=26/34	new_cov=428/368	polymorphism_frequency=9.299e-01	polymorphism_score=74.0	prediction=consensus	ref_cov=26/34	total_cov=454/402
RA	402	.	Xen14_202	191	0	G	T	bias_e_value=4152680	bias_p_value=0.836637	consensus_score=2710.3	fisher_strand_p_value=0.489809	frequency=1	ks_quality_p_value=0.992127	major_base=T	major_cov=504/422	major_frequency=9.187e-01	minor_base=G	minor_cov=48/34	new_cov=504/422	polymorphism_frequency=9.187e-01	polymorphism_score=179.2	prediction=consensus	ref_cov=48/34	total_cov=552/457
RA	403	.	Xen14_202	244	0	A	T	bias_e_value=4611500	bias_p_value=0.929075	consensus_score=2752.0	fisher_strand_p_value=0.665129	frequency=1	ks_quality_p_value=0.974007	major_base=T	major_cov=498/452	major_frequency=9.100e-01	minor_base=A	minor_cov=52/42	new_cov=498/452	polymorphism_frequency=9.100e-01	polymorphism_score=208.2	prediction=consensus	ref_cov=52/42	total_cov=551/496
RA	404	.	Xen14_202	259	0	A	G	bias_e_value=4775210	bias_p_value=0.962057	consensus_score=2191.9	fisher_strand_p_value=0.741657	frequency=1	ks_quality_p_value=0.994377	major_base=G	major_cov=441/409	major_frequency=9.033e-01	minor_base=A	minor_cov=49/42	new_cov=441/409	polymorphism_frequency=9.033e-01	polymorphism_score=131.4	prediction=consensus	ref_cov=49/42	total_cov=490/452
RA	405	.	Xen14_202	260	0	A	G	bias_e_value=4462910	bias_p_value=0.899139	consensus_score=2198.8	fisher_strand_p_value=0.585925	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=439/411	major_frequency=9.014e-01	minor_base=A	minor_cov=51/42	new_cov=439/411	polymorphism_frequency=9.014e-01	polymorphism_score=129.5	prediction=consensus	ref_cov=51/42	total_cov=490/453
RA	406	.	Xen14_202	266	0	C	T	bias_e_value=3389960	bias_p_value=0.682973	consensus_score=2200.8	fisher_strand_p_value=0.318558	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=441/412	major_frequency=9.055e-01	minor_base=C	minor_cov=51/38	new_cov=441/412	polymorphism_frequency=9.055e-01	polymorphism_score=128.8	prediction=consensus	ref_cov=51/38	total_cov=492/450
RA	407	.	Xen14_202	267	0	A	C	bias_e_value=4214490	bias_p_value=0.849089	consensus_score=2480.6	fisher_strand_p_value=0.503648	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=442/410	major_frequency=9.054e-01	minor_base=A	minor_cov=50/39	new_cov=442/410	polymorphism_frequency=9.054e-01	polymorphism_score=183.1	prediction=consensus	ref_cov=50/39	total_cov=492/450
RA	408	.	Xen14_202	294	0	C	A	bias_e_value=4779100	bias_p_value=0.962841	consensus_score=2424.9	fisher_strand_p_value=0.740077	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=427/447	major_frequency=9.066e-01	minor_base=C	minor_cov=46/44	new_cov=427/447	polymorphism_frequency=9.066e-01	polymorphism_score=199.4	prediction=consensus	ref_cov=46/44	total_cov=473/491
RA	409	.	Xen14_202	314	0	T	A	bias_e_value=4963540	bias_p_value=1	consensus_score=1947.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=327/400	major_frequency=9.122e-01	minor_base=T	minor_cov=31/39	new_cov=327/400	polymorphism_frequency=9.122e-01	polymorphism_score=151.2	prediction=consensus	ref_cov=31/39	total_cov=358/441
RA	410	.	Xen14_202	320	0	A	G	bias_e_value=4716500	bias_p_value=0.950229	consensus_score=1503.0	fisher_strand_p_value=0.701565	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=278/357	major_frequency=9.020e-01	minor_base=A	minor_cov=28/41	new_cov=278/357	polymorphism_frequency=9.020e-01	polymorphism_score=98.0	prediction=consensus	ref_cov=28/41	total_cov=306/398
RA	411	.	Xen14_202	323	0	G	A	bias_e_value=4481060	bias_p_value=0.902796	consensus_score=1527.9	fisher_strand_p_value=0.59552	frequency=1	ks_quality_p_value=0.995502	major_base=A	major_cov=278/360	major_frequency=9.101e-01	minor_base=G	minor_cov=25/38	new_cov=278/360	polymorphism_frequency=9.101e-01	polymorphism_score=87.7	prediction=consensus	ref_cov=25/38	total_cov=303/398
RA	412	.	Xen14_202	332	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_score=1342.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999752	major_base=T	major_cov=245/329	major_frequency=9.054e-01	minor_base=C	minor_cov=25/35	new_cov=245/329	polymorphism_frequency=9.054e-01	polymorphism_score=86.6	prediction=consensus	ref_cov=25/35	total_cov=270/367
RA	413	.	Xen14_202	335	0	T	A	bias_e_value=4929890	bias_p_value=0.993221	consensus_score=1491.2	fisher_strand_p_value=0.885847	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=242/329	major_frequency=9.136e-01	minor_base=T	minor_cov=22/32	new_cov=242/329	polymorphism_frequency=9.136e-01	polymorphism_score=114.9	prediction=consensus	ref_cov=22/32	total_cov=265/364
RA	414	.	Xen14_202	341	0	A	G	bias_e_value=4961220	bias_p_value=0.999533	consensus_score=1132.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969598	major_base=G	major_cov=197/300	major_frequency=9.053e-01	minor_base=A	minor_cov=21/31	new_cov=197/300	polymorphism_frequency=9.053e-01	polymorphism_score=73.8	prediction=consensus	ref_cov=21/31	total_cov=218/331
RA	415	.	Xen14_202	344	0	T	C	bias_e_value=2996300	bias_p_value=0.603661	consensus_score=1062.1	fisher_strand_p_value=0.255151	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=186/300	major_frequency=8.934e-01	minor_base=T	minor_cov=27/31	new_cov=186/300	polymorphism_frequency=8.934e-01	polymorphism_score=71.9	prediction=consensus	ref_cov=27/31	total_cov=213/331
RA	416	.	Xen14_205	259	0	T	A	bias_e_value=3622750	bias_p_value=0.729872	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1738.0	fisher_strand_p_value=0.366728	frequency=2.745e-01	ks_quality_p_value=0.987214	major_base=T	major_cov=371/385	major_frequency=7.255e-01	minor_base=A	minor_cov=131/155	new_cov=131/155	polymorphism_frequency=2.745e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=371/385	total_cov=503/541
RA	417	.	Xen14_205	264	0	A	T	bias_e_value=3615480	bias_p_value=0.728407	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1819.6	fisher_strand_p_value=0.394308	frequency=2.602e-01	ks_quality_p_value=0.914513	major_base=A	major_cov=387/372	major_frequency=7.398e-01	minor_base=T	minor_cov=128/139	new_cov=128/139	polymorphism_frequency=2.602e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=387/372	total_cov=517/512
RA	418	.	Xen14_23	67342	0	T	G	bias_e_value=4.76116e-08	bias_p_value=9.59228e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.6	fisher_strand_p_value=2.60055e-16	frequency=2.645e-01	ks_quality_p_value=1	major_base=T	major_cov=70/19	major_frequency=7.355e-01	minor_base=G	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.645e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=70/19	total_cov=70/57
RA	419	.	Xen14_23	71933	0	G	A	bias_e_value=0.0008472	bias_p_value=1.70685e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.1	fisher_strand_p_value=6.37387e-12	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=61/27	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=61/27	total_cov=61/55
RA	420	.	Xen14_24	9196	0	G	C	bias_e_value=2.07904e-09	bias_p_value=4.18863e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.8	fisher_strand_p_value=1.04454e-17	frequency=3.736e-01	ks_quality_p_value=1	major_base=G	major_cov=49/8	major_frequency=6.264e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.736e-01	polymorphism_score=61.0	prediction=polymorphism	ref_cov=49/8	total_cov=49/45
RA	421	.	Xen14_24	9197	0	T	C	bias_e_value=0.00154212	bias_p_value=3.10691e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.9	fisher_strand_p_value=1.18782e-11	frequency=2.708e-01	ks_quality_p_value=1	major_base=T	major_cov=51/19	major_frequency=7.292e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.708e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=51/19	total_cov=51/45
RA	422	.	Xen14_24	9198	0	T	C	bias_e_value=0.00520937	bias_p_value=1.04953e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.8	fisher_strand_p_value=4.21677e-11	frequency=2.604e-01	ks_quality_p_value=1	major_base=T	major_cov=51/20	major_frequency=7.396e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.604e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=51/20	total_cov=51/45
RA	423	.	Xen14_24	53314	0	G	A	bias_e_value=101.001	bias_p_value=2.03486e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.3	fisher_strand_p_value=1.40579e-06	frequency=2.674e-01	ks_quality_p_value=1	major_base=G	major_cov=38/25	major_frequency=7.326e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.674e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=38/25	total_cov=39/47
RA	424	.	Xen14_25	2449	0	G	A	bias_e_value=0.00798772	bias_p_value=1.60928e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.0	fisher_strand_p_value=6.58358e-11	frequency=3.175e-01	ks_quality_p_value=1	major_base=G	major_cov=36/7	major_frequency=6.825e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.175e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=36/7	total_cov=36/39
RA	425	.	Xen14_25	61732	0	G	C	bias_e_value=0.213791	bias_p_value=4.30724e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.6	fisher_strand_p_value=2.05056e-09	frequency=3.548e-01	ks_quality_p_value=1	major_base=G	major_cov=30/10	major_frequency=6.452e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.548e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=30/10	total_cov=30/38
RA	426	.	Xen14_25	61736	0	T	C	bias_e_value=0.00180187	bias_p_value=3.63021e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=1.39653e-11	frequency=4.242e-01	ks_quality_p_value=1	major_base=T	major_cov=30/8	major_frequency=5.758e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=4.242e-01	polymorphism_score=45.4	prediction=polymorphism	ref_cov=30/8	total_cov=30/36
RA	427	.	Xen14_26	42031	0	T	C	bias_e_value=190.424	bias_p_value=3.83646e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.0	fisher_strand_p_value=2.78156e-06	frequency=2.049e-01	ks_quality_p_value=1	major_base=T	major_cov=45/52	major_frequency=7.951e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.049e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=45/52	total_cov=45/78
RA	428	.	Xen14_26	64884	0	C	A	bias_e_value=0.000831824	bias_p_value=1.67587e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=310.6	fisher_strand_p_value=6.25375e-12	frequency=2.014e-01	ks_quality_p_value=1	major_base=C	major_cov=75/36	major_frequency=7.986e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.014e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=75/36	total_cov=75/64
RA	429	.	Xen14_27	34495	0	G	A	bias_e_value=0.0663709	bias_p_value=1.33717e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.7	fisher_strand_p_value=6.01471e-10	frequency=2.296e-01	ks_quality_p_value=1	major_base=G	major_cov=66/38	major_frequency=7.704e-01	minor_base=A	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=2.296e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=66/38	total_cov=67/70
RA	430	.	Xen14_27	69396	0	T	C	bias_e_value=0.00301932	bias_p_value=6.083e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.6	fisher_strand_p_value=2.38948e-11	frequency=2.029e-01	ks_quality_p_value=1	major_base=T	major_cov=72/38	major_frequency=7.971e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.029e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=72/38	total_cov=73/66
RA	431	.	Xen14_27	70010	0	A	T	bias_e_value=1875920	bias_p_value=0.377939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.2	fisher_strand_p_value=0.12166	frequency=3.161e-01	ks_quality_p_value=1	major_base=A	major_cov=71/61	major_frequency=6.839e-01	minor_base=T	minor_cov=25/36	new_cov=25/36	polymorphism_frequency=3.161e-01	polymorphism_score=169.2	prediction=polymorphism	ref_cov=71/61	total_cov=97/98
RA	432	.	Xen14_27	70100	0	C	T	bias_e_value=1619270	bias_p_value=0.326233	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.7	fisher_strand_p_value=0.109181	frequency=4.868e-01	ks_quality_p_value=0.899959	major_base=C	major_cov=70/66	major_frequency=5.132e-01	minor_base=T	minor_cov=53/76	new_cov=53/76	polymorphism_frequency=4.868e-01	polymorphism_score=293.1	prediction=polymorphism	ref_cov=70/66	total_cov=123/142
RA	433	.	Xen14_27	70319	0	C	T	bias_e_value=4338870	bias_p_value=0.874148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.9	fisher_strand_p_value=0.542292	frequency=5.259e-01	ks_quality_p_value=1	major_base=T	major_cov=76/66	major_frequency=5.259e-01	minor_base=C	minor_cov=63/65	new_cov=76/66	polymorphism_frequency=5.259e-01	polymorphism_score=288.4	prediction=polymorphism	ref_cov=63/65	total_cov=139/131
RA	434	.	Xen14_27	70334	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.5	fisher_strand_p_value=1	frequency=5.090e-01	ks_quality_p_value=1	major_base=G	major_cov=78/63	major_frequency=5.090e-01	minor_base=A	minor_cov=75/61	new_cov=78/63	polymorphism_frequency=5.090e-01	polymorphism_score=307.3	prediction=polymorphism	ref_cov=75/61	total_cov=153/124
RA	435	.	Xen14_27	70510	0	A	G	bias_e_value=1938630	bias_p_value=0.390575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.9	fisher_strand_p_value=0.127729	frequency=4.863e-01	ks_quality_p_value=1	major_base=A	major_cov=66/84	major_frequency=5.137e-01	minor_base=G	minor_cov=76/66	new_cov=76/66	polymorphism_frequency=4.863e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/84	total_cov=143/150
RA	436	.	Xen14_27	70545	0	G	T	bias_e_value=4645520	bias_p_value=0.93593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=0.732917	frequency=4.951e-01	ks_quality_p_value=0.906102	major_base=G	major_cov=71/85	major_frequency=5.049e-01	minor_base=T	minor_cov=73/80	new_cov=73/80	polymorphism_frequency=4.951e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/85	total_cov=144/165
RA	437	.	Xen14_27	70578	0	C	T	bias_e_value=4719600	bias_p_value=0.950854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.0	fisher_strand_p_value=0.722522	frequency=4.610e-01	ks_quality_p_value=0.973443	major_base=C	major_cov=64/95	major_frequency=5.390e-01	minor_base=T	minor_cov=58/78	new_cov=58/78	polymorphism_frequency=4.610e-01	polymorphism_score=304.5	prediction=polymorphism	ref_cov=64/95	total_cov=123/173
RA	438	.	Xen14_27	70598	0	G	T	bias_e_value=3273080	bias_p_value=0.659425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.7	fisher_strand_p_value=0.341081	frequency=4.558e-01	ks_quality_p_value=0.875262	major_base=G	major_cov=61/99	major_frequency=5.442e-01	minor_base=T	minor_cov=59/75	new_cov=59/75	polymorphism_frequency=4.558e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/99	total_cov=120/174
RA	439	.	Xen14_27	70661	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.5	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=55/69	major_frequency=5.000e-01	minor_base=C	minor_cov=56/68	new_cov=55/69	polymorphism_frequency=5.000e-01	polymorphism_score=281.1	prediction=polymorphism	ref_cov=56/68	total_cov=111/137
RA	440	.	Xen14_27	70693	0	T	A	bias_e_value=3655000	bias_p_value=0.736369	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.1	fisher_strand_p_value=0.368491	frequency=5.328e-01	ks_quality_p_value=1	major_base=A	major_cov=64/66	major_frequency=5.328e-01	minor_base=T	minor_cov=49/65	new_cov=64/66	polymorphism_frequency=5.328e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=49/65	total_cov=114/132
RA	441	.	Xen14_27	70865	0	T	C	bias_e_value=4862870	bias_p_value=0.979718	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.9	fisher_strand_p_value=0.805478	frequency=4.737e-01	ks_quality_p_value=1	major_base=T	major_cov=65/75	major_frequency=5.263e-01	minor_base=C	minor_cov=56/70	new_cov=56/70	polymorphism_frequency=4.737e-01	polymorphism_score=285.8	prediction=polymorphism	ref_cov=65/75	total_cov=121/145
RA	442	.	Xen14_27	71183	0	A	G	bias_e_value=4160150	bias_p_value=0.838143	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.9	fisher_strand_p_value=0.488045	frequency=5.972e-01	ks_quality_p_value=1	major_base=G	major_cov=35/51	major_frequency=5.972e-01	minor_base=A	minor_cov=20/38	new_cov=35/51	polymorphism_frequency=5.972e-01	polymorphism_score=123.6	prediction=polymorphism	ref_cov=20/38	total_cov=55/89
RA	443	.	Xen14_28	78	0	T	C	bias_e_value=208699	bias_p_value=0.0420464	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.9	fisher_strand_p_value=0.131853	frequency=7.156e-01	ks_quality_p_value=0.0535691	major_base=C	major_cov=29/49	major_frequency=7.156e-01	minor_base=T	minor_cov=17/14	new_cov=29/49	polymorphism_frequency=7.156e-01	polymorphism_score=58.5	prediction=polymorphism	ref_cov=17/14	total_cov=46/63
RA	444	.	Xen14_28	132	0	G	C	bias_e_value=4170900	bias_p_value=0.840308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.8	fisher_strand_p_value=0.491076	frequency=7.073e-01	ks_quality_p_value=1	major_base=C	major_cov=50/66	major_frequency=7.073e-01	minor_base=G	minor_cov=24/24	new_cov=50/66	polymorphism_frequency=7.073e-01	polymorphism_score=141.2	prediction=polymorphism	ref_cov=24/24	total_cov=75/90
RA	445	.	Xen14_28	207	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.7	fisher_strand_p_value=1	frequency=7.113e-01	ks_quality_p_value=1	major_base=C	major_cov=61/77	major_frequency=7.113e-01	minor_base=T	minor_cov=25/31	new_cov=61/77	polymorphism_frequency=7.113e-01	polymorphism_score=106.3	prediction=polymorphism	ref_cov=25/31	total_cov=86/108
RA	446	.	Xen14_28	233	0	A	G	bias_e_value=3724530	bias_p_value=0.750379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.0	fisher_strand_p_value=0.746217	frequency=7.273e-01	ks_quality_p_value=0.512985	major_base=G	major_cov=57/87	major_frequency=7.273e-01	minor_base=A	minor_cov=23/31	new_cov=57/87	polymorphism_frequency=7.273e-01	polymorphism_score=102.4	prediction=polymorphism	ref_cov=23/31	total_cov=80/118
RA	447	.	Xen14_28	252	0	C	T	bias_e_value=4924050	bias_p_value=0.992044	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.6	fisher_strand_p_value=0.876538	frequency=6.957e-01	ks_quality_p_value=1	major_base=T	major_cov=56/88	major_frequency=6.957e-01	minor_base=C	minor_cov=23/40	new_cov=56/88	polymorphism_frequency=6.957e-01	polymorphism_score=123.0	prediction=polymorphism	ref_cov=23/40	total_cov=80/128
RA	448	.	Xen14_28	276	0	T	C	bias_e_value=1647740	bias_p_value=0.33197	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.1	fisher_strand_p_value=0.745311	frequency=7.430e-01	ks_quality_p_value=0.135171	major_base=C	major_cov=56/103	major_frequency=7.430e-01	minor_base=T	minor_cov=21/34	new_cov=56/103	polymorphism_frequency=7.430e-01	polymorphism_score=103.2	prediction=polymorphism	ref_cov=21/34	total_cov=77/137
RA	449	.	Xen14_28	48676	0	G	A	bias_e_value=2.10487	bias_p_value=4.24067e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.7	fisher_strand_p_value=2.28038e-08	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=38/18	major_frequency=7.273e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=38/18	total_cov=38/39
RA	450	.	Xen14_29	31773	0	C	G	bias_e_value=0.294502	bias_p_value=5.9333e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.1	fisher_strand_p_value=2.87067e-09	frequency=3.023e-01	ks_quality_p_value=1	major_base=C	major_cov=2/28	major_frequency=6.977e-01	minor_base=G	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=3.023e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=2/28	total_cov=16/28
RA	451	.	Xen14_3	38678	0	C	T	bias_e_value=0.0010236	bias_p_value=2.06224e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.9	fisher_strand_p_value=7.75795e-12	frequency=2.026e-01	ks_quality_p_value=1	major_base=C	major_cov=45/77	major_frequency=7.974e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.026e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=45/77	total_cov=76/77
RA	452	.	Xen14_3	40725	0	C	G	bias_e_value=8.64312e-13	bias_p_value=1.74132e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.9	fisher_strand_p_value=3.62269e-21	frequency=3.033e-01	ks_quality_p_value=1	major_base=C	major_cov=12/73	major_frequency=6.967e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.033e-01	polymorphism_score=54.9	prediction=polymorphism	ref_cov=12/73	total_cov=59/73
RA	453	.	Xen14_3	81286	0	A	C	bias_e_value=2.01053e-11	bias_p_value=4.0506e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.2	fisher_strand_p_value=9.03124e-20	frequency=3.780e-01	ks_quality_p_value=1	major_base=A	major_cov=19/60	major_frequency=6.220e-01	minor_base=C	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=3.780e-01	polymorphism_score=54.1	prediction=polymorphism	ref_cov=19/60	total_cov=69/60
RA	454	.	Xen14_3	81290	0	T	C	bias_e_value=0.825073	bias_p_value=1.66227e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.1	fisher_strand_p_value=8.4876e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=43/61	major_frequency=8.000e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.000e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=43/61	total_cov=69/61
RA	455	.	Xen14_3	81322	0	A	C	bias_e_value=24.6344	bias_p_value=4.96308e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.1	fisher_strand_p_value=3.10481e-07	frequency=2.269e-01	ks_quality_p_value=1	major_base=A	major_cov=40/52	major_frequency=7.731e-01	minor_base=C	minor_cov=26/1	new_cov=26/1	polymorphism_frequency=2.269e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=40/52	total_cov=69/53
RA	456	.	Xen14_3	84467	0	C	G	bias_e_value=1.75344e-13	bias_p_value=3.53265e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.6	fisher_strand_p_value=7.10858e-22	frequency=3.040e-01	ks_quality_p_value=1	major_base=C	major_cov=12/75	major_frequency=6.960e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.040e-01	polymorphism_score=61.4	prediction=polymorphism	ref_cov=12/75	total_cov=59/75
RA	457	.	Xen14_3	150582	0	C	T	bias_e_value=1.42416e-06	bias_p_value=2.86924e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.2	fisher_strand_p_value=8.5937e-15	frequency=3.188e-01	ks_quality_p_value=1	major_base=C	major_cov=34/60	major_frequency=6.812e-01	minor_base=T	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.188e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=34/60	total_cov=80/60
RA	458	.	Xen14_3	166143	0	G	A	bias_e_value=4896410	bias_p_value=0.986476	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.4	fisher_strand_p_value=0.840109	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=48/36	major_frequency=7.000e-01	minor_base=A	minor_cov=22/14	new_cov=22/14	polymorphism_frequency=3.000e-01	polymorphism_score=66.0	prediction=polymorphism	ref_cov=48/36	total_cov=70/50
RA	459	.	Xen14_3	166152	0	T	C	bias_e_value=4217610	bias_p_value=0.849719	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.1	fisher_strand_p_value=0.504568	frequency=4.514e-01	ks_quality_p_value=1	major_base=T	major_cov=47/32	major_frequency=5.486e-01	minor_base=C	minor_cov=35/30	new_cov=35/30	polymorphism_frequency=4.514e-01	polymorphism_score=141.6	prediction=polymorphism	ref_cov=47/32	total_cov=82/62
RA	460	.	Xen14_3	166234	0	G	A	bias_e_value=2128030	bias_p_value=0.428733	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.5	fisher_strand_p_value=0.22603	frequency=3.432e-01	ks_quality_p_value=0.650094	major_base=G	major_cov=102/97	major_frequency=6.568e-01	minor_base=A	minor_cov=45/59	new_cov=45/59	polymorphism_frequency=3.432e-01	polymorphism_score=216.6	prediction=polymorphism	ref_cov=102/97	total_cov=147/156
RA	461	.	Xen14_31	58729	0	A	G	bias_e_value=3843400	bias_p_value=0.774326	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.4	fisher_strand_p_value=0.408624	frequency=4.079e-01	ks_quality_p_value=1	major_base=A	major_cov=47/43	major_frequency=5.921e-01	minor_base=G	minor_cov=37/25	new_cov=37/25	polymorphism_frequency=4.079e-01	polymorphism_score=128.1	prediction=polymorphism	ref_cov=47/43	total_cov=85/68
RA	462	.	Xen14_31	58747	0	C	A	bias_e_value=2166060	bias_p_value=0.436395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.2	fisher_strand_p_value=0.428183	frequency=3.818e-01	ks_quality_p_value=0.352571	major_base=C	major_cov=40/28	major_frequency=6.182e-01	minor_base=A	minor_cov=28/14	new_cov=28/14	polymorphism_frequency=3.818e-01	polymorphism_score=106.8	prediction=polymorphism	ref_cov=40/28	total_cov=70/42
RA	463	.	Xen14_31	58754	0	G	A	bias_e_value=2626140	bias_p_value=0.529087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.1	fisher_strand_p_value=0.641943	frequency=3.412e-01	ks_quality_p_value=0.318571	major_base=G	major_cov=33/23	major_frequency=6.588e-01	minor_base=A	minor_cov=19/10	new_cov=19/10	polymorphism_frequency=3.412e-01	polymorphism_score=54.2	prediction=polymorphism	ref_cov=33/23	total_cov=52/33
RA	464	.	Xen14_35	33446	0	G	A	bias_e_value=0.00051774	bias_p_value=1.04309e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.2	fisher_strand_p_value=3.82221e-12	frequency=2.468e-01	ks_quality_p_value=1	major_base=G	major_cov=68/48	major_frequency=7.532e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.468e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=68/48	total_cov=68/89
RA	465	.	Xen14_35	45757	0	A	G	bias_e_value=7.48738e-06	bias_p_value=1.50848e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.0	fisher_strand_p_value=4.76229e-14	frequency=2.315e-01	ks_quality_p_value=1	major_base=A	major_cov=16/67	major_frequency=7.685e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.315e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=16/67	total_cov=41/67
RA	466	.	Xen14_35	45758	0	A	G	bias_e_value=0.000157332	bias_p_value=3.16976e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.0	fisher_strand_p_value=1.1112e-12	frequency=2.130e-01	ks_quality_p_value=1	major_base=A	major_cov=18/67	major_frequency=7.870e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.130e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=18/67	total_cov=41/67
RA	467	.	Xen14_36	12183	0	C	T	bias_e_value=0.461469	bias_p_value=9.29717e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.0	fisher_strand_p_value=4.60336e-09	frequency=2.738e-01	ks_quality_p_value=1	major_base=C	major_cov=20/41	major_frequency=7.262e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.738e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=20/41	total_cov=48/41
RA	468	.	Xen14_37	179	0	C	T	bias_e_value=2531030	bias_p_value=0.509925	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.1	fisher_strand_p_value=0.499899	frequency=4.024e-01	ks_quality_p_value=0.385382	major_base=C	major_cov=27/22	major_frequency=5.976e-01	minor_base=T	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=4.024e-01	polymorphism_score=65.9	prediction=polymorphism	ref_cov=27/22	total_cov=42/40
RA	469	.	Xen14_37	190	0	T	C	bias_e_value=4166600	bias_p_value=0.839442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.4	fisher_strand_p_value=0.48986	frequency=3.457e-01	ks_quality_p_value=1	major_base=T	major_cov=31/22	major_frequency=6.543e-01	minor_base=C	minor_cov=14/14	new_cov=14/14	polymorphism_frequency=3.457e-01	polymorphism_score=52.2	prediction=polymorphism	ref_cov=31/22	total_cov=45/37
RA	470	.	Xen14_37	195	0	T	G	bias_e_value=3313220	bias_p_value=0.667512	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.9	fisher_strand_p_value=0.305288	frequency=2.763e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.237e-01	minor_base=G	minor_cov=10/11	new_cov=10/11	polymorphism_frequency=2.763e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=34/21	total_cov=44/32
RA	471	.	Xen14_37	196	0	T	A	bias_e_value=2144570	bias_p_value=0.432065	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.7	fisher_strand_p_value=0.293604	frequency=2.568e-01	ks_quality_p_value=0.506409	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.568e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=34/21	total_cov=44/32
RA	472	.	Xen14_37	42807	0	A	.	bias_e_value=2598460	bias_p_value=0.52351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.4	fisher_strand_p_value=0.20101	frequency=3.137e-01	ks_quality_p_value=1	major_base=A	major_cov=41/29	major_frequency=6.863e-01	minor_base=.	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.137e-01	polymorphism_score=108.3	prediction=polymorphism	ref_cov=41/29	total_cov=55/47
RA	473	.	Xen14_38	15362	0	T	A	bias_e_value=1381810	bias_p_value=0.278393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.3	fisher_strand_p_value=0.0785541	frequency=5.119e-01	ks_quality_p_value=1	major_base=A	major_cov=75/76	major_frequency=5.119e-01	minor_base=T	minor_cov=56/88	new_cov=75/76	polymorphism_frequency=5.119e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/88	total_cov=131/164
RA	474	.	Xen14_38	15487	0	C	A	bias_e_value=3536330	bias_p_value=0.712462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.7	fisher_strand_p_value=0.346965	frequency=5.450e-01	ks_quality_p_value=0.995175	major_base=A	major_cov=62/59	major_frequency=5.450e-01	minor_base=C	minor_cov=45/56	new_cov=62/59	polymorphism_frequency=5.450e-01	polymorphism_score=313.8	prediction=polymorphism	ref_cov=45/56	total_cov=108/115
RA	475	.	Xen14_38	15801	0	A	G	bias_e_value=4864060	bias_p_value=0.979959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.7	fisher_strand_p_value=0.806594	frequency=4.624e-01	ks_quality_p_value=1	major_base=A	major_cov=72/71	major_frequency=5.376e-01	minor_base=G	minor_cov=64/59	new_cov=64/59	polymorphism_frequency=4.624e-01	polymorphism_score=276.9	prediction=polymorphism	ref_cov=72/71	total_cov=136/131
RA	476	.	Xen14_38	15816	0	A	T	bias_e_value=4295670	bias_p_value=0.865445	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.5	fisher_strand_p_value=0.528365	frequency=4.488e-01	ks_quality_p_value=1	major_base=A	major_cov=66/74	major_frequency=5.512e-01	minor_base=T	minor_cov=59/55	new_cov=59/55	polymorphism_frequency=4.488e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/74	total_cov=126/129
RA	477	.	Xen14_38	15848	0	G	A	bias_e_value=4488930	bias_p_value=0.904381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=0.595888	frequency=4.675e-01	ks_quality_p_value=1	major_base=G	major_cov=71/52	major_frequency=5.325e-01	minor_base=A	minor_cov=58/50	new_cov=58/50	polymorphism_frequency=4.675e-01	polymorphism_score=244.7	prediction=polymorphism	ref_cov=71/52	total_cov=129/102
RA	478	.	Xen14_38	15864	0	C	T	bias_e_value=3849230	bias_p_value=0.775502	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.1	fisher_strand_p_value=0.40994	frequency=4.233e-01	ks_quality_p_value=1	major_base=C	major_cov=66/58	major_frequency=5.767e-01	minor_base=T	minor_cov=43/48	new_cov=43/48	polymorphism_frequency=4.233e-01	polymorphism_score=197.6	prediction=polymorphism	ref_cov=66/58	total_cov=109/106
RA	479	.	Xen14_38	15866	0	T	G	bias_e_value=3762870	bias_p_value=0.758102	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.2	fisher_strand_p_value=0.40994	frequency=4.233e-01	ks_quality_p_value=0.953625	major_base=T	major_cov=66/58	major_frequency=5.767e-01	minor_base=G	minor_cov=43/48	new_cov=43/48	polymorphism_frequency=4.233e-01	polymorphism_score=279.4	prediction=polymorphism	ref_cov=66/58	total_cov=110/106
RA	480	.	Xen14_38	15869	0	A	G	bias_e_value=3047580	bias_p_value=0.613994	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.9	fisher_strand_p_value=0.268052	frequency=4.292e-01	ks_quality_p_value=0.9804	major_base=A	major_cov=67/54	major_frequency=5.708e-01	minor_base=G	minor_cov=43/48	new_cov=43/48	polymorphism_frequency=4.292e-01	polymorphism_score=202.2	prediction=polymorphism	ref_cov=67/54	total_cov=110/103
RA	481	.	Xen14_38	15879	0	C	T	bias_e_value=1902340	bias_p_value=0.383263	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.4	fisher_strand_p_value=0.181548	frequency=4.533e-01	ks_quality_p_value=0.684112	major_base=C	major_cov=67/56	major_frequency=5.467e-01	minor_base=T	minor_cov=46/56	new_cov=46/56	polymorphism_frequency=4.533e-01	polymorphism_score=228.3	prediction=polymorphism	ref_cov=67/56	total_cov=113/112
RA	482	.	Xen14_38	16010	0	C	T	bias_e_value=4431730	bias_p_value=0.892857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.3	fisher_strand_p_value=0.574387	frequency=5.481e-01	ks_quality_p_value=1	major_base=T	major_cov=47/67	major_frequency=5.481e-01	minor_base=C	minor_cov=43/51	new_cov=47/67	polymorphism_frequency=5.481e-01	polymorphism_score=208.3	prediction=polymorphism	ref_cov=43/51	total_cov=90/118
RA	483	.	Xen14_38	16016	0	T	C	bias_e_value=4663210	bias_p_value=0.939494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.0	fisher_strand_p_value=0.672947	frequency=5.789e-01	ks_quality_p_value=1	major_base=C	major_cov=51/70	major_frequency=5.789e-01	minor_base=T	minor_cov=40/48	new_cov=51/70	polymorphism_frequency=5.789e-01	polymorphism_score=190.5	prediction=polymorphism	ref_cov=40/48	total_cov=91/118
RA	484	.	Xen14_38	16020	0	G	A	bias_e_value=4659050	bias_p_value=0.938654	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.6	fisher_strand_p_value=0.670836	frequency=5.539e-01	ks_quality_p_value=1	major_base=A	major_cov=48/65	major_frequency=5.539e-01	minor_base=G	minor_cov=42/49	new_cov=48/65	polymorphism_frequency=5.539e-01	polymorphism_score=200.0	prediction=polymorphism	ref_cov=42/49	total_cov=90/114
RA	485	.	Xen14_38	16025	0	G	T	bias_e_value=4659050	bias_p_value=0.938654	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.0	fisher_strand_p_value=0.670836	frequency=5.588e-01	ks_quality_p_value=1	major_base=T	major_cov=49/65	major_frequency=5.588e-01	minor_base=G	minor_cov=42/48	new_cov=49/65	polymorphism_frequency=5.588e-01	polymorphism_score=273.7	prediction=polymorphism	ref_cov=42/48	total_cov=91/113
RA	486	.	Xen14_38	16124	0	G	A	bias_e_value=424261	bias_p_value=0.0854756	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.3	fisher_strand_p_value=0.0386254	frequency=2.819e-01	ks_quality_p_value=0.435101	major_base=G	major_cov=72/35	major_frequency=7.181e-01	minor_base=A	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.819e-01	polymorphism_score=80.6	prediction=polymorphism	ref_cov=72/35	total_cov=92/57
RA	487	.	Xen14_38	38835	0	C	G	bias_e_value=0.0028992	bias_p_value=5.84099e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.3	fisher_strand_p_value=2.29062e-11	frequency=2.105e-01	ks_quality_p_value=1	major_base=C	major_cov=25/65	major_frequency=7.895e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.105e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=25/65	total_cov=59/65
RA	488	.	Xen14_38	48227	0	A	G	bias_e_value=113732	bias_p_value=0.0229134	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=0.159931	frequency=3.533e-01	ks_quality_p_value=0.021466	major_base=A	major_cov=74/45	major_frequency=6.467e-01	minor_base=G	minor_cov=33/32	new_cov=33/32	polymorphism_frequency=3.533e-01	polymorphism_score=136.2	prediction=polymorphism	ref_cov=74/45	total_cov=107/77
RA	489	.	Xen14_38	48325	0	T	C	bias_e_value=3940240	bias_p_value=0.793837	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.9	fisher_strand_p_value=0.432686	frequency=6.134e-01	ks_quality_p_value=0.996342	major_base=C	major_cov=126/85	major_frequency=6.134e-01	minor_base=T	minor_cov=73/60	new_cov=126/85	polymorphism_frequency=6.134e-01	polymorphism_score=286.3	prediction=polymorphism	ref_cov=73/60	total_cov=200/145
RA	490	.	Xen14_38	48337	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=588.4	fisher_strand_p_value=1	frequency=7.462e-01	ks_quality_p_value=1	major_base=G	major_cov=209/185	major_frequency=7.462e-01	minor_base=A	minor_cov=71/63	new_cov=209/185	polymorphism_frequency=7.462e-01	polymorphism_score=257.8	prediction=polymorphism	ref_cov=71/63	total_cov=281/248
RA	491	.	Xen14_38	48371	0	G	T	bias_e_value=3609620	bias_p_value=0.727227	consensus_score=2394.1	fisher_strand_p_value=0.359445	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=465/421	major_frequency=8.661e-01	minor_base=G	minor_cov=66/71	new_cov=465/421	polymorphism_frequency=8.661e-01	polymorphism_score=inf	prediction=consensus	ref_cov=66/71	total_cov=531/492
RA	492	.	Xen14_4	75265	0	C	T	bias_e_value=1.08113e-05	bias_p_value=2.17815e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.8	fisher_strand_p_value=6.95983e-14	frequency=2.459e-01	ks_quality_p_value=1	major_base=C	major_cov=20/72	major_frequency=7.541e-01	minor_base=T	minor_cov=29/1	new_cov=29/1	polymorphism_frequency=2.459e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=20/72	total_cov=53/73
RA	493	.	Xen14_4	77336	0	A	C	bias_e_value=12.1327	bias_p_value=2.44437e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.3	fisher_strand_p_value=1.46024e-07	frequency=2.676e-01	ks_quality_p_value=1	major_base=A	major_cov=17/35	major_frequency=7.324e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.676e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=17/35	total_cov=37/35
RA	494	.	Xen14_42	27836	0	C	G	bias_e_value=8.06253e-10	bias_p_value=1.62435e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.2	fisher_strand_p_value=3.95493e-18	frequency=2.649e-01	ks_quality_p_value=1	major_base=C	major_cov=29/82	major_frequency=7.351e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.649e-01	polymorphism_score=65.0	prediction=polymorphism	ref_cov=29/82	total_cov=79/84
RA	495	.	Xen14_42	30734	0	C	T	bias_e_value=5.97988e-06	bias_p_value=1.20476e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.3	fisher_strand_p_value=3.77578e-14	frequency=2.395e-01	ks_quality_p_value=1	major_base=C	major_cov=48/79	major_frequency=7.605e-01	minor_base=T	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.395e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=48/79	total_cov=88/79
RA	496	.	Xen14_42	30762	0	C	T	bias_e_value=2.28243e-07	bias_p_value=4.5984e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.6	fisher_strand_p_value=1.30364e-15	frequency=2.331e-01	ks_quality_p_value=1	major_base=C	major_cov=40/85	major_frequency=7.669e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.331e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=40/85	total_cov=78/85
RA	497	.	Xen14_43	8323	0	C	G	bias_e_value=1.40052e-10	bias_p_value=2.82162e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.1	fisher_strand_p_value=6.58262e-19	frequency=2.593e-01	ks_quality_p_value=1	major_base=C	major_cov=19/81	major_frequency=7.407e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.593e-01	polymorphism_score=46.3	prediction=polymorphism	ref_cov=19/81	total_cov=63/81
RA	498	.	Xen14_43	39111	0	A	G	bias_e_value=4508810	bias_p_value=0.908385	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.9	fisher_strand_p_value=1	frequency=3.313e-01	ks_quality_p_value=0.603723	major_base=A	major_cov=54/55	major_frequency=6.687e-01	minor_base=G	minor_cov=27/27	new_cov=27/27	polymorphism_frequency=3.313e-01	polymorphism_score=110.3	prediction=polymorphism	ref_cov=54/55	total_cov=81/86
RA	499	.	Xen14_43	39114	0	G	A	bias_e_value=3887410	bias_p_value=0.783194	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.9	fisher_strand_p_value=0.870123	frequency=3.176e-01	ks_quality_p_value=0.481162	major_base=G	major_cov=56/60	major_frequency=6.824e-01	minor_base=A	minor_cov=27/27	new_cov=27/27	polymorphism_frequency=3.176e-01	polymorphism_score=108.3	prediction=polymorphism	ref_cov=56/60	total_cov=83/87
RA	500	.	Xen14_43	39195	0	G	A	bias_e_value=4842460	bias_p_value=0.975607	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.6	fisher_strand_p_value=0.790688	frequency=5.522e-01	ks_quality_p_value=0.99586	major_base=A	major_cov=66/61	major_frequency=5.522e-01	minor_base=G	minor_cov=56/47	new_cov=66/61	polymorphism_frequency=5.522e-01	polymorphism_score=229.2	prediction=polymorphism	ref_cov=56/47	total_cov=122/108
RA	501	.	Xen14_43	39246	0	A	G	bias_e_value=4937030	bias_p_value=0.994659	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.6	fisher_strand_p_value=0.898441	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=72/53	major_frequency=5.000e-01	minor_base=G	minor_cov=70/55	new_cov=70/55	polymorphism_frequency=5.000e-01	polymorphism_score=285.7	prediction=polymorphism	ref_cov=72/53	total_cov=142/108
RA	502	.	Xen14_43	39249	0	C	G	bias_e_value=3932910	bias_p_value=0.792361	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.8	fisher_strand_p_value=0.796527	frequency=5.123e-01	ks_quality_p_value=0.539032	major_base=G	major_cov=70/55	major_frequency=5.123e-01	minor_base=C	minor_cov=69/50	new_cov=70/55	polymorphism_frequency=5.123e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=69/50	total_cov=139/105
RA	503	.	Xen14_43	39258	0	T	A	bias_e_value=4936140	bias_p_value=0.994481	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.9	fisher_strand_p_value=0.897467	frequency=5.388e-01	ks_quality_p_value=0.999251	major_base=A	major_cov=73/59	major_frequency=5.388e-01	minor_base=T	minor_cov=64/49	new_cov=73/59	polymorphism_frequency=5.388e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/49	total_cov=137/108
RA	504	.	Xen14_43	39261	0	G	A	bias_e_value=4957690	bias_p_value=0.998821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.2	fisher_strand_p_value=1	frequency=5.385e-01	ks_quality_p_value=0.951844	major_base=A	major_cov=74/59	major_frequency=5.385e-01	minor_base=G	minor_cov=63/51	new_cov=74/59	polymorphism_frequency=5.385e-01	polymorphism_score=258.6	prediction=polymorphism	ref_cov=63/51	total_cov=137/110
RA	505	.	Xen14_43	39264	0	C	A	bias_e_value=4946440	bias_p_value=0.996555	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.2	fisher_strand_p_value=1	frequency=5.388e-01	ks_quality_p_value=0.918154	major_base=A	major_cov=73/59	major_frequency=5.388e-01	minor_base=C	minor_cov=62/51	new_cov=73/59	polymorphism_frequency=5.388e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=62/51	total_cov=135/111
RA	506	.	Xen14_43	39291	0	G	A	bias_e_value=4701670	bias_p_value=0.947242	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.5	fisher_strand_p_value=0.693276	frequency=5.408e-01	ks_quality_p_value=1	major_base=A	major_cov=67/59	major_frequency=5.408e-01	minor_base=G	minor_cov=60/47	new_cov=67/59	polymorphism_frequency=5.408e-01	polymorphism_score=239.0	prediction=polymorphism	ref_cov=60/47	total_cov=127/106
RA	507	.	Xen14_43	39293	0	C	A	bias_e_value=4498370	bias_p_value=0.906284	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.1	fisher_strand_p_value=0.599586	frequency=5.365e-01	ks_quality_p_value=1	major_base=A	major_cov=66/59	major_frequency=5.365e-01	minor_base=C	minor_cov=61/47	new_cov=66/59	polymorphism_frequency=5.365e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=61/47	total_cov=127/106
RA	508	.	Xen14_43	39296	0	C	T	bias_e_value=4851790	bias_p_value=0.977486	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.6	fisher_strand_p_value=0.795446	frequency=5.274e-01	ks_quality_p_value=1	major_base=T	major_cov=67/58	major_frequency=5.274e-01	minor_base=C	minor_cov=62/50	new_cov=67/58	polymorphism_frequency=5.274e-01	polymorphism_score=253.9	prediction=polymorphism	ref_cov=62/50	total_cov=129/109
RA	509	.	Xen14_43	39300	0	G	A	bias_e_value=4902810	bias_p_value=0.987766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.8	fisher_strand_p_value=0.896597	frequency=5.230e-01	ks_quality_p_value=0.945473	major_base=A	major_cov=67/58	major_frequency=5.230e-01	minor_base=G	minor_cov=63/51	new_cov=67/58	polymorphism_frequency=5.230e-01	polymorphism_score=260.5	prediction=polymorphism	ref_cov=63/51	total_cov=130/110
RA	510	.	Xen14_43	39312	0	G	A	bias_e_value=4954470	bias_p_value=0.998172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=1	frequency=5.608e-01	ks_quality_p_value=0.940151	major_base=A	major_cov=79/64	major_frequency=5.608e-01	minor_base=G	minor_cov=61/51	new_cov=79/64	polymorphism_frequency=5.608e-01	polymorphism_score=248.2	prediction=polymorphism	ref_cov=61/51	total_cov=140/115
RA	511	.	Xen14_43	39330	0	G	C	bias_e_value=3742060	bias_p_value=0.75391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.4	fisher_strand_p_value=0.396263	frequency=5.203e-01	ks_quality_p_value=0.975346	major_base=C	major_cov=78/63	major_frequency=5.203e-01	minor_base=G	minor_cov=65/65	new_cov=78/63	polymorphism_frequency=5.203e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/65	total_cov=143/128
RA	512	.	Xen14_43	39336	0	C	T	bias_e_value=3228570	bias_p_value=0.650457	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.328118	frequency=4.962e-01	ks_quality_p_value=0.887462	major_base=C	major_cov=64/69	major_frequency=5.038e-01	minor_base=T	minor_cov=71/60	new_cov=71/60	polymorphism_frequency=4.962e-01	polymorphism_score=302.3	prediction=polymorphism	ref_cov=64/69	total_cov=135/129
RA	513	.	Xen14_43	39338	0	G	A	bias_e_value=2872740	bias_p_value=0.578769	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.8	fisher_strand_p_value=0.264115	frequency=5.115e-01	ks_quality_p_value=0.898811	major_base=A	major_cov=72/61	major_frequency=5.115e-01	minor_base=G	minor_cov=59/68	new_cov=72/61	polymorphism_frequency=5.115e-01	polymorphism_score=291.9	prediction=polymorphism	ref_cov=59/68	total_cov=131/129
RA	514	.	Xen14_43	39342	0	A	G	bias_e_value=2414710	bias_p_value=0.486489	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.7	fisher_strand_p_value=0.178735	frequency=4.962e-01	ks_quality_p_value=1	major_base=A	major_cov=62/71	major_frequency=5.038e-01	minor_base=G	minor_cov=72/59	new_cov=72/59	polymorphism_frequency=4.962e-01	polymorphism_score=289.8	prediction=polymorphism	ref_cov=62/71	total_cov=134/131
RA	515	.	Xen14_43	39366	0	T	C	bias_e_value=2677540	bias_p_value=0.539441	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.4	fisher_strand_p_value=0.211094	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=68/60	major_frequency=5.000e-01	minor_base=T	minor_cov=57/71	new_cov=68/60	polymorphism_frequency=5.000e-01	polymorphism_score=289.5	prediction=polymorphism	ref_cov=57/71	total_cov=125/131
RA	516	.	Xen14_43	39408	0	A	G	bias_e_value=4639480	bias_p_value=0.934712	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.6	fisher_strand_p_value=0.691231	frequency=4.589e-01	ks_quality_p_value=0.956464	major_base=A	major_cov=55/70	major_frequency=5.411e-01	minor_base=G	minor_cov=50/56	new_cov=50/56	polymorphism_frequency=4.589e-01	polymorphism_score=236.3	prediction=polymorphism	ref_cov=55/70	total_cov=105/126
RA	517	.	Xen14_43	39411	0	G	A	bias_e_value=4698900	bias_p_value=0.946684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.5	fisher_strand_p_value=0.691759	frequency=4.696e-01	ks_quality_p_value=1	major_base=G	major_cov=54/68	major_frequency=5.304e-01	minor_base=A	minor_cov=51/57	new_cov=51/57	polymorphism_frequency=4.696e-01	polymorphism_score=239.8	prediction=polymorphism	ref_cov=54/68	total_cov=105/125
RA	518	.	Xen14_43	39417	0	G	A	bias_e_value=4484830	bias_p_value=0.903554	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.0	fisher_strand_p_value=0.594296	frequency=4.513e-01	ks_quality_p_value=1	major_base=G	major_cov=55/69	major_frequency=5.487e-01	minor_base=A	minor_cov=49/53	new_cov=49/53	polymorphism_frequency=4.513e-01	polymorphism_score=223.8	prediction=polymorphism	ref_cov=55/69	total_cov=104/122
RA	519	.	Xen14_43	39423	0	G	C	bias_e_value=4833050	bias_p_value=0.973711	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.9	fisher_strand_p_value=0.779644	frequency=4.238e-01	ks_quality_p_value=1	major_base=G	major_cov=55/66	major_frequency=5.762e-01	minor_base=C	minor_cov=43/46	new_cov=43/46	polymorphism_frequency=4.238e-01	polymorphism_score=284.7	prediction=polymorphism	ref_cov=55/66	total_cov=99/114
RA	520	.	Xen14_43	39424	0	G	T	bias_e_value=4835800	bias_p_value=0.974266	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=0.781883	frequency=4.225e-01	ks_quality_p_value=1	major_base=G	major_cov=56/67	major_frequency=5.775e-01	minor_base=T	minor_cov=43/47	new_cov=43/47	polymorphism_frequency=4.225e-01	polymorphism_score=246.0	prediction=polymorphism	ref_cov=56/67	total_cov=99/114
RA	521	.	Xen14_43	39425	0	A	G	bias_e_value=4298030	bias_p_value=0.865921	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.6	fisher_strand_p_value=0.780127	frequency=4.104e-01	ks_quality_p_value=0.678239	major_base=A	major_cov=56/69	major_frequency=5.896e-01	minor_base=G	minor_cov=41/46	new_cov=41/46	polymorphism_frequency=4.104e-01	polymorphism_score=189.0	prediction=polymorphism	ref_cov=56/69	total_cov=97/116
RA	522	.	Xen14_43	39435	0	G	A	bias_e_value=3428120	bias_p_value=0.690661	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.7	fisher_strand_p_value=0.35861	frequency=4.589e-01	ks_quality_p_value=0.90723	major_base=G	major_cov=56/69	major_frequency=5.411e-01	minor_base=A	minor_cov=54/52	new_cov=54/52	polymorphism_frequency=4.589e-01	polymorphism_score=236.3	prediction=polymorphism	ref_cov=56/69	total_cov=110/121
RA	523	.	Xen14_43	39539	0	A	C	bias_e_value=39767.4	bias_p_value=0.0080119	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.7	fisher_strand_p_value=0.00860118	frequency=4.400e-01	ks_quality_p_value=0.118018	major_base=A	major_cov=49/49	major_frequency=5.600e-01	minor_base=C	minor_cov=54/23	new_cov=54/23	polymorphism_frequency=4.400e-01	polymorphism_score=235.0	prediction=polymorphism	ref_cov=49/49	total_cov=103/72
RA	524	.	Xen14_43	39657	0	T	C	bias_e_value=2614990	bias_p_value=0.526841	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.9	fisher_strand_p_value=0.639124	frequency=4.606e-01	ks_quality_p_value=0.317767	major_base=T	major_cov=44/45	major_frequency=5.394e-01	minor_base=C	minor_cov=34/42	new_cov=34/42	polymorphism_frequency=4.606e-01	polymorphism_score=168.9	prediction=polymorphism	ref_cov=44/45	total_cov=78/87
RA	525	.	Xen14_43	39680	0	T	C	bias_e_value=2871850	bias_p_value=0.578589	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.8	fisher_strand_p_value=1	frequency=4.611e-01	ks_quality_p_value=0.237265	major_base=T	major_cov=51/46	major_frequency=5.389e-01	minor_base=C	minor_cov=44/39	new_cov=44/39	polymorphism_frequency=4.611e-01	polymorphism_score=180.7	prediction=polymorphism	ref_cov=51/46	total_cov=95/85
RA	526	.	Xen14_43	39862	0	C	A	bias_e_value=526840	bias_p_value=0.106142	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.3	fisher_strand_p_value=0.532789	frequency=4.691e-01	ks_quality_p_value=0.0413779	major_base=C	major_cov=42/44	major_frequency=5.309e-01	minor_base=A	minor_cov=41/35	new_cov=41/35	polymorphism_frequency=4.691e-01	polymorphism_score=217.2	prediction=polymorphism	ref_cov=42/44	total_cov=83/79
RA	527	.	Xen14_43	39877	0	G	A	bias_e_value=2327510	bias_p_value=0.468922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.3	fisher_strand_p_value=0.168699	frequency=4.419e-01	ks_quality_p_value=1	major_base=G	major_cov=45/51	major_frequency=5.581e-01	minor_base=A	minor_cov=44/32	new_cov=44/32	polymorphism_frequency=4.419e-01	polymorphism_score=161.8	prediction=polymorphism	ref_cov=45/51	total_cov=89/83
RA	528	.	Xen14_43	39878	0	T	C	bias_e_value=864944	bias_p_value=0.17426	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.4	fisher_strand_p_value=0.128526	frequency=4.368e-01	ks_quality_p_value=0.324614	major_base=T	major_cov=45/53	major_frequency=5.632e-01	minor_base=C	minor_cov=44/32	new_cov=44/32	polymorphism_frequency=4.368e-01	polymorphism_score=165.7	prediction=polymorphism	ref_cov=45/53	total_cov=89/85
RA	529	.	Xen14_43	39899	0	T	G	bias_e_value=600656	bias_p_value=0.121014	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.4	fisher_strand_p_value=0.227729	frequency=4.800e-01	ks_quality_p_value=0.114319	major_base=T	major_cov=40/51	major_frequency=5.200e-01	minor_base=G	minor_cov=45/39	new_cov=45/39	polymorphism_frequency=4.800e-01	polymorphism_score=262.3	prediction=polymorphism	ref_cov=40/51	total_cov=85/90
RA	530	.	Xen14_43	40767	0	G	A	bias_e_value=4225870	bias_p_value=0.851382	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.7	fisher_strand_p_value=0.776089	frequency=3.653e-01	ks_quality_p_value=0.653285	major_base=G	major_cov=57/82	major_frequency=6.347e-01	minor_base=A	minor_cov=31/49	new_cov=31/49	polymorphism_frequency=3.653e-01	polymorphism_score=169.7	prediction=polymorphism	ref_cov=57/82	total_cov=88/131
RA	531	.	Xen14_43	40794	0	G	A	bias_e_value=4739480	bias_p_value=0.954859	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.1	fisher_strand_p_value=0.894763	frequency=4.268e-01	ks_quality_p_value=0.799082	major_base=G	major_cov=57/80	major_frequency=5.732e-01	minor_base=A	minor_cov=44/58	new_cov=44/58	polymorphism_frequency=4.268e-01	polymorphism_score=225.6	prediction=polymorphism	ref_cov=57/80	total_cov=101/138
RA	532	.	Xen14_43	40897	0	A	T	bias_e_value=87952.3	bias_p_value=0.0177197	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.4	fisher_strand_p_value=0.0232228	frequency=4.750e-01	ks_quality_p_value=0.109387	major_base=A	major_cov=43/62	major_frequency=5.250e-01	minor_base=T	minor_cov=55/40	new_cov=55/40	polymorphism_frequency=4.750e-01	polymorphism_score=288.5	prediction=polymorphism	ref_cov=43/62	total_cov=99/102
RA	533	.	Xen14_43	41059	0	A	G	bias_e_value=2676540	bias_p_value=0.539241	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=0.231257	frequency=5.242e-01	ks_quality_p_value=0.912258	major_base=G	major_cov=62/57	major_frequency=5.242e-01	minor_base=A	minor_cov=65/43	new_cov=62/57	polymorphism_frequency=5.242e-01	polymorphism_score=242.7	prediction=polymorphism	ref_cov=65/43	total_cov=128/100
RA	534	.	Xen14_43	41061	0	T	C	bias_e_value=2817870	bias_p_value=0.567715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=0.229789	frequency=5.219e-01	ks_quality_p_value=1	major_base=C	major_cov=62/57	major_frequency=5.219e-01	minor_base=T	minor_cov=66/43	new_cov=62/57	polymorphism_frequency=5.219e-01	polymorphism_score=244.8	prediction=polymorphism	ref_cov=66/43	total_cov=128/100
RA	535	.	Xen14_43	41075	0	G	A	bias_e_value=1511090	bias_p_value=0.304437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.7	fisher_strand_p_value=0.089056	frequency=5.254e-01	ks_quality_p_value=1	major_base=A	major_cov=61/63	major_frequency=5.254e-01	minor_base=G	minor_cov=68/44	new_cov=61/63	polymorphism_frequency=5.254e-01	polymorphism_score=251.6	prediction=polymorphism	ref_cov=68/44	total_cov=129/107
RA	536	.	Xen14_43	41097	0	A	G	bias_e_value=2890970	bias_p_value=0.582442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.1	fisher_strand_p_value=0.240479	frequency=5.272e-01	ks_quality_p_value=0.997815	major_base=G	major_cov=67/59	major_frequency=5.272e-01	minor_base=A	minor_cov=69/44	new_cov=67/59	polymorphism_frequency=5.272e-01	polymorphism_score=254.8	prediction=polymorphism	ref_cov=69/44	total_cov=137/103
RA	537	.	Xen14_43	41107	0	T	C	bias_e_value=1517700	bias_p_value=0.30577	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.6	fisher_strand_p_value=0.0896077	frequency=5.187e-01	ks_quality_p_value=1	major_base=C	major_cov=67/58	major_frequency=5.187e-01	minor_base=T	minor_cov=75/41	new_cov=67/58	polymorphism_frequency=5.187e-01	polymorphism_score=262.8	prediction=polymorphism	ref_cov=75/41	total_cov=142/99
RA	538	.	Xen14_43	41131	0	T	A	bias_e_value=2234010	bias_p_value=0.450084	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.7	fisher_strand_p_value=0.16056	frequency=5.405e-01	ks_quality_p_value=0.985905	major_base=A	major_cov=79/61	major_frequency=5.405e-01	minor_base=T	minor_cov=78/41	new_cov=79/61	polymorphism_frequency=5.405e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=78/41	total_cov=157/102
RA	539	.	Xen14_43	41148	0	C	T	bias_e_value=2728950	bias_p_value=0.549798	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.4	fisher_strand_p_value=0.21848	frequency=5.255e-01	ks_quality_p_value=0.996985	major_base=T	major_cov=81/63	major_frequency=5.255e-01	minor_base=C	minor_cov=83/47	new_cov=81/63	polymorphism_frequency=5.255e-01	polymorphism_score=295.5	prediction=polymorphism	ref_cov=83/47	total_cov=165/110
RA	540	.	Xen14_43	41162	0	T	C	bias_e_value=3097420	bias_p_value=0.624035	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.3	fisher_strand_p_value=0.270394	frequency=5.527e-01	ks_quality_p_value=1	major_base=C	major_cov=85/67	major_frequency=5.527e-01	minor_base=T	minor_cov=77/46	new_cov=85/67	polymorphism_frequency=5.527e-01	polymorphism_score=271.2	prediction=polymorphism	ref_cov=77/46	total_cov=162/113
RA	541	.	Xen14_43	41182	0	T	C	bias_e_value=2549160	bias_p_value=0.513578	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.9	fisher_strand_p_value=0.196136	frequency=5.592e-01	ks_quality_p_value=0.993585	major_base=C	major_cov=72/65	major_frequency=5.592e-01	minor_base=T	minor_cov=66/42	new_cov=72/65	polymorphism_frequency=5.592e-01	polymorphism_score=241.9	prediction=polymorphism	ref_cov=66/42	total_cov=138/107
RA	542	.	Xen14_43	41209	0	T	A	bias_e_value=838368	bias_p_value=0.168905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.6	fisher_strand_p_value=0.22028	frequency=5.955e-01	ks_quality_p_value=0.181799	major_base=A	major_cov=56/50	major_frequency=5.955e-01	minor_base=T	minor_cov=45/27	new_cov=56/50	polymorphism_frequency=5.955e-01	polymorphism_score=211.0	prediction=polymorphism	ref_cov=45/27	total_cov=101/78
RA	543	.	Xen14_43	41219	1	.	T	bias_e_value=133209	bias_p_value=0.0268376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.5	fisher_strand_p_value=0.147561	frequency=5.854e-01	ks_quality_p_value=0.0280329	major_base=T	major_cov=52/44	major_frequency=5.854e-01	minor_base=.	minor_cov=45/23	new_cov=52/44	polymorphism_frequency=5.854e-01	polymorphism_score=248.3	prediction=polymorphism	ref_cov=45/23	total_cov=97/67
RA	544	.	Xen14_44	8912	0	C	T	bias_e_value=0.000517284	bias_p_value=1.04217e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.8	fisher_strand_p_value=3.81871e-12	frequency=2.362e-01	ks_quality_p_value=1	major_base=C	major_cov=32/65	major_frequency=7.638e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.362e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=32/65	total_cov=63/65
RA	545	.	Xen14_44	9689	0	G	C	bias_e_value=0.00910711	bias_p_value=1.8348e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.8	fisher_strand_p_value=7.54842e-11	frequency=3.014e-01	ks_quality_p_value=1	major_base=G	major_cov=40/11	major_frequency=6.986e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.014e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=40/11	total_cov=40/47
RA	546	.	Xen14_45	36169	0	C	G	bias_e_value=2119680	bias_p_value=0.42705	consensus_reject=FREQUENCY_CUTOFF	consensus_score=533.5	fisher_strand_p_value=0.349075	frequency=2.218e-01	ks_quality_p_value=0.418434	major_base=C	major_cov=89/97	major_frequency=7.782e-01	minor_base=G	minor_cov=21/32	new_cov=21/32	polymorphism_frequency=2.218e-01	polymorphism_score=151.4	prediction=polymorphism	ref_cov=89/97	total_cov=110/129
RA	547	.	Xen14_45	36193	0	A	C	bias_e_value=1486880	bias_p_value=0.299561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=348.9	fisher_strand_p_value=0.0870494	frequency=3.465e-01	ks_quality_p_value=1	major_base=A	major_cov=91/107	major_frequency=6.535e-01	minor_base=C	minor_cov=37/68	new_cov=37/68	polymorphism_frequency=3.465e-01	polymorphism_score=297.3	prediction=polymorphism	ref_cov=91/107	total_cov=128/175
RA	548	.	Xen14_45	36294	0	A	T	bias_e_value=791322	bias_p_value=0.159427	consensus_reject=FREQUENCY_CUTOFF	consensus_score=558.6	fisher_strand_p_value=0.037193	frequency=3.193e-01	ks_quality_p_value=0.998434	major_base=A	major_cov=106/201	major_frequency=6.807e-01	minor_base=T	minor_cov=65/79	new_cov=65/79	polymorphism_frequency=3.193e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=106/201	total_cov=172/280
RA	549	.	Xen14_45	36298	0	C	T	bias_e_value=777555	bias_p_value=0.156653	consensus_reject=FREQUENCY_CUTOFF	consensus_score=480.1	fisher_strand_p_value=0.0362955	frequency=3.106e-01	ks_quality_p_value=1	major_base=C	major_cov=107/206	major_frequency=6.894e-01	minor_base=T	minor_cov=63/78	new_cov=63/78	polymorphism_frequency=3.106e-01	polymorphism_score=284.6	prediction=polymorphism	ref_cov=107/206	total_cov=170/284
RA	550	.	Xen14_45	36361	0	A	C	bias_e_value=191875	bias_p_value=0.0386569	consensus_reject=FREQUENCY_CUTOFF	consensus_score=463.5	fisher_strand_p_value=0.00638566	frequency=3.267e-01	ks_quality_p_value=1	major_base=A	major_cov=94/176	major_frequency=6.733e-01	minor_base=C	minor_cov=65/66	new_cov=65/66	polymorphism_frequency=3.267e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=94/176	total_cov=159/242
RA	551	.	Xen14_5	17958	0	T	G	bias_e_value=4.62749e-08	bias_p_value=9.32297e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.7	fisher_strand_p_value=2.52553e-16	frequency=2.414e-01	ks_quality_p_value=1	major_base=T	major_cov=73/15	major_frequency=7.586e-01	minor_base=G	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=73/15	total_cov=73/43
RA	552	.	Xen14_5	40183	0	G	T	bias_e_value=0.124477	bias_p_value=2.50783e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.5	fisher_strand_p_value=1.1625e-09	frequency=2.059e-01	ks_quality_p_value=1	major_base=G	major_cov=57/24	major_frequency=7.941e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.059e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=57/24	total_cov=57/45
RA	553	.	Xen14_50	22424	0	C	A	bias_e_value=2.93532	bias_p_value=5.91376e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.9	fisher_strand_p_value=3.24136e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=48/21	major_frequency=7.931e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.069e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=48/21	total_cov=48/39
RA	554	.	Xen14_50	22432	0	C	A	bias_e_value=0.0578123	bias_p_value=1.16474e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.3	fisher_strand_p_value=5.20527e-10	frequency=2.353e-01	ks_quality_p_value=1	major_base=C	major_cov=49/16	major_frequency=7.647e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.353e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=49/16	total_cov=49/37
RA	555	.	Xen14_53	9824	0	C	T	bias_e_value=4.54729e-09	bias_p_value=9.16138e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.6	fisher_strand_p_value=2.33129e-17	frequency=3.206e-01	ks_quality_p_value=1	major_base=C	major_cov=24/65	major_frequency=6.794e-01	minor_base=T	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=3.206e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=24/65	total_cov=80/65
RA	556	.	Xen14_53	29874	0	A	G	bias_e_value=4122440	bias_p_value=0.830546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.5	fisher_strand_p_value=0.547412	frequency=2.807e-01	ks_quality_p_value=0.872488	major_base=A	major_cov=101/63	major_frequency=7.193e-01	minor_base=G	minor_cov=36/28	new_cov=36/28	polymorphism_frequency=2.807e-01	polymorphism_score=123.5	prediction=polymorphism	ref_cov=101/63	total_cov=137/91
RA	557	.	Xen14_53	30216	0	C	T	bias_e_value=2953120	bias_p_value=0.594963	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.3	fisher_strand_p_value=0.766258	frequency=4.332e-01	ks_quality_p_value=0.324747	major_base=C	major_cov=45/61	major_frequency=5.668e-01	minor_base=T	minor_cov=37/44	new_cov=37/44	polymorphism_frequency=4.332e-01	polymorphism_score=174.4	prediction=polymorphism	ref_cov=45/61	total_cov=82/106
RA	558	.	Xen14_57	26027	0	T	A	bias_e_value=2261600	bias_p_value=0.455642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.3	fisher_strand_p_value=0.161329	frequency=2.609e-01	ks_quality_p_value=1	major_base=T	major_cov=40/28	major_frequency=7.391e-01	minor_base=A	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=2.609e-01	polymorphism_score=61.4	prediction=polymorphism	ref_cov=40/28	total_cov=50/44
RA	559	.	Xen14_57	26165	0	C	T	bias_e_value=4170170	bias_p_value=0.84016	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.4	fisher_strand_p_value=1	frequency=4.811e-01	ks_quality_p_value=0.490868	major_base=C	major_cov=33/22	major_frequency=5.189e-01	minor_base=T	minor_cov=30/21	new_cov=30/21	polymorphism_frequency=4.811e-01	polymorphism_score=110.6	prediction=polymorphism	ref_cov=33/22	total_cov=63/43
RA	560	.	Xen14_58	4981	0	G	T	bias_e_value=1.0546e-05	bias_p_value=2.1247e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.1	fisher_strand_p_value=6.78346e-14	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=72/39	major_frequency=7.500e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.500e-01	polymorphism_score=46.3	prediction=polymorphism	ref_cov=72/39	total_cov=72/78
RA	561	.	Xen14_60	18851	0	T	A	bias_e_value=36674.8	bias_p_value=0.00738884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.4	fisher_strand_p_value=0.000925294	frequency=2.946e-01	ks_quality_p_value=1	major_base=T	major_cov=49/30	major_frequency=7.054e-01	minor_base=A	minor_cov=9/24	new_cov=9/24	polymorphism_frequency=2.946e-01	polymorphism_score=88.2	prediction=polymorphism	ref_cov=49/30	total_cov=58/54
RA	562	.	Xen14_60	22002	0	C	T	bias_e_value=4674760	bias_p_value=0.941821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.7	fisher_strand_p_value=0.678888	frequency=3.271e-01	ks_quality_p_value=1	major_base=C	major_cov=39/33	major_frequency=6.729e-01	minor_base=T	minor_cov=21/14	new_cov=21/14	polymorphism_frequency=3.271e-01	polymorphism_score=63.9	prediction=polymorphism	ref_cov=39/33	total_cov=60/47
RA	563	.	Xen14_60	22007	0	G	C	bias_e_value=1219130	bias_p_value=0.245617	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.2	fisher_strand_p_value=0.281047	frequency=3.168e-01	ks_quality_p_value=0.235128	major_base=G	major_cov=36/33	major_frequency=6.832e-01	minor_base=C	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.168e-01	polymorphism_score=95.8	prediction=polymorphism	ref_cov=36/33	total_cov=57/45
RA	564	.	Xen14_60	22014	0	G	A	bias_e_value=1074340	bias_p_value=0.216446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.0	fisher_strand_p_value=0.387686	frequency=3.137e-01	ks_quality_p_value=0.143581	major_base=G	major_cov=38/32	major_frequency=6.863e-01	minor_base=A	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.137e-01	polymorphism_score=60.2	prediction=polymorphism	ref_cov=38/32	total_cov=59/43
RA	565	.	Xen14_60	22016	0	C	T	bias_e_value=1735340	bias_p_value=0.349618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=0.278968	frequency=3.232e-01	ks_quality_p_value=0.389158	major_base=C	major_cov=35/32	major_frequency=6.768e-01	minor_base=T	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.232e-01	polymorphism_score=62.5	prediction=polymorphism	ref_cov=35/32	total_cov=56/43
RA	566	.	Xen14_60	22041	0	C	T	bias_e_value=2570280	bias_p_value=0.517833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.7	fisher_strand_p_value=0.650562	frequency=3.158e-01	ks_quality_p_value=0.303569	major_base=C	major_cov=39/26	major_frequency=6.842e-01	minor_base=T	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=3.158e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=39/26	total_cov=59/36
RA	567	.	Xen14_60	22047	0	T	A	bias_e_value=2207680	bias_p_value=0.44478	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.6	fisher_strand_p_value=0.507461	frequency=3.125e-01	ks_quality_p_value=0.306298	major_base=T	major_cov=39/27	major_frequency=6.875e-01	minor_base=A	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=3.125e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=39/27	total_cov=59/37
RA	568	.	Xen14_60	22059	0	C	A	bias_e_value=3071550	bias_p_value=0.618823	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.4	fisher_strand_p_value=0.462241	frequency=2.556e-01	ks_quality_p_value=0.57639	major_base=C	major_cov=40/27	major_frequency=7.444e-01	minor_base=A	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=2.556e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=40/27	total_cov=56/34
RA	569	.	Xen14_60	22062	0	G	C	bias_e_value=2694130	bias_p_value=0.542784	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.5	fisher_strand_p_value=0.460793	frequency=2.473e-01	ks_quality_p_value=0.462791	major_base=G	major_cov=41/29	major_frequency=7.527e-01	minor_base=C	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=2.473e-01	polymorphism_score=63.1	prediction=polymorphism	ref_cov=41/29	total_cov=57/36
RA	570	.	Xen14_60	22066	0	A	G	bias_e_value=2798790	bias_p_value=0.56387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.4	fisher_strand_p_value=0.459708	frequency=2.527e-01	ks_quality_p_value=0.494193	major_base=A	major_cov=40/28	major_frequency=7.473e-01	minor_base=G	minor_cov=16/7	new_cov=16/7	polymorphism_frequency=2.527e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=40/28	total_cov=56/35
RA	571	.	Xen14_60	22101	0	T	C	bias_e_value=23039.4	bias_p_value=0.00464173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.5	fisher_strand_p_value=0.00536289	frequency=2.286e-01	ks_quality_p_value=0.101654	major_base=T	major_cov=47/34	major_frequency=7.714e-01	minor_base=C	minor_cov=6/18	new_cov=6/18	polymorphism_frequency=2.286e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=47/34	total_cov=53/53
RA	572	.	Xen14_60	22116	0	T	C	bias_e_value=1853150	bias_p_value=0.373352	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.4	fisher_strand_p_value=0.271935	frequency=3.511e-01	ks_quality_p_value=0.439412	major_base=T	major_cov=45/40	major_frequency=6.489e-01	minor_base=C	minor_cov=19/27	new_cov=19/27	polymorphism_frequency=3.511e-01	polymorphism_score=93.3	prediction=polymorphism	ref_cov=45/40	total_cov=64/67
RA	573	.	Xen14_60	22143	0	G	A	bias_e_value=631370	bias_p_value=0.127202	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.0	fisher_strand_p_value=0.249418	frequency=4.333e-01	ks_quality_p_value=0.111238	major_base=G	major_cov=44/41	major_frequency=5.667e-01	minor_base=A	minor_cov=27/38	new_cov=27/38	polymorphism_frequency=4.333e-01	polymorphism_score=142.8	prediction=polymorphism	ref_cov=44/41	total_cov=71/79
RA	574	.	Xen14_60	22155	0	C	T	bias_e_value=407123	bias_p_value=0.0820228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.7	fisher_strand_p_value=0.0573541	frequency=4.658e-01	ks_quality_p_value=0.278379	major_base=C	major_cov=47/39	major_frequency=5.342e-01	minor_base=T	minor_cov=29/46	new_cov=29/46	polymorphism_frequency=4.658e-01	polymorphism_score=167.6	prediction=polymorphism	ref_cov=47/39	total_cov=76/85
RA	575	.	Xen14_60	22344	0	C	T	bias_e_value=3208440	bias_p_value=0.646402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.9	fisher_strand_p_value=0.832706	frequency=2.991e-01	ks_quality_p_value=0.345765	major_base=C	major_cov=36/39	major_frequency=7.009e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.991e-01	polymorphism_score=60.8	prediction=polymorphism	ref_cov=36/39	total_cov=50/57
RA	576	.	Xen14_64	201	0	T	A	bias_e_value=511179	bias_p_value=0.102987	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.7	fisher_strand_p_value=0.0212227	frequency=2.653e-01	ks_quality_p_value=1	major_base=T	major_cov=36/36	major_frequency=7.347e-01	minor_base=A	minor_cov=20/6	new_cov=20/6	polymorphism_frequency=2.653e-01	polymorphism_score=66.7	prediction=polymorphism	ref_cov=36/36	total_cov=56/42
RA	577	.	Xen14_64	859	0	T	C	bias_e_value=3713520	bias_p_value=0.74816	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.0	fisher_strand_p_value=0.834447	frequency=3.238e-01	ks_quality_p_value=0.455985	major_base=T	major_cov=42/29	major_frequency=6.762e-01	minor_base=C	minor_cov=21/13	new_cov=21/13	polymorphism_frequency=3.238e-01	polymorphism_score=64.9	prediction=polymorphism	ref_cov=42/29	total_cov=63/42
RA	578	.	Xen14_64	867	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.3	fisher_strand_p_value=1	frequency=3.426e-01	ks_quality_p_value=1	major_base=G	major_cov=41/30	major_frequency=6.574e-01	minor_base=A	minor_cov=21/16	new_cov=21/16	polymorphism_frequency=3.426e-01	polymorphism_score=71.5	prediction=polymorphism	ref_cov=41/30	total_cov=62/46
RA	579	.	Xen14_64	927	0	G	A	bias_e_value=1731040	bias_p_value=0.348752	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.2	fisher_strand_p_value=0.641708	frequency=3.851e-01	ks_quality_p_value=0.16857	major_base=G	major_cov=47/60	major_frequency=6.149e-01	minor_base=A	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=3.851e-01	polymorphism_score=141.3	prediction=polymorphism	ref_cov=47/60	total_cov=79/95
RA	580	.	Xen14_64	966	0	C	G	bias_e_value=2150180	bias_p_value=0.433194	consensus_reject=FREQUENCY_CUTOFF	consensus_score=410.6	fisher_strand_p_value=0.149277	frequency=2.053e-01	ks_quality_p_value=1	major_base=C	major_cov=71/80	major_frequency=7.947e-01	minor_base=G	minor_cov=13/26	new_cov=13/26	polymorphism_frequency=2.053e-01	polymorphism_score=105.9	prediction=polymorphism	ref_cov=71/80	total_cov=85/106
RA	581	.	Xen14_64	1145	0	A	G	bias_e_value=4621190	bias_p_value=0.931028	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.7	fisher_strand_p_value=0.652376	frequency=6.765e-01	ks_quality_p_value=1	major_base=G	major_cov=56/82	major_frequency=6.765e-01	minor_base=A	minor_cov=29/37	new_cov=56/82	polymorphism_frequency=6.765e-01	polymorphism_score=129.0	prediction=polymorphism	ref_cov=29/37	total_cov=85/119
RA	582	.	Xen14_64	1160	0	G	A	bias_e_value=1616990	bias_p_value=0.325773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=0.554068	frequency=6.667e-01	ks_quality_p_value=0.176983	major_base=A	major_cov=57/83	major_frequency=6.667e-01	minor_base=G	minor_cov=32/38	new_cov=57/83	polymorphism_frequency=6.667e-01	polymorphism_score=144.6	prediction=polymorphism	ref_cov=32/38	total_cov=89/121
RA	583	.	Xen14_64	1193	0	A	G	bias_e_value=4930090	bias_p_value=0.99326	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.1	fisher_strand_p_value=0.886168	frequency=6.606e-01	ks_quality_p_value=1	major_base=G	major_cov=75/69	major_frequency=6.606e-01	minor_base=A	minor_cov=40/34	new_cov=75/69	polymorphism_frequency=6.606e-01	polymorphism_score=152.5	prediction=polymorphism	ref_cov=40/34	total_cov=115/103
RA	584	.	Xen14_64	1211	0	G	T	bias_e_value=3661520	bias_p_value=0.737684	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.9	fisher_strand_p_value=0.36981	frequency=6.500e-01	ks_quality_p_value=1	major_base=T	major_cov=70/60	major_frequency=6.500e-01	minor_base=G	minor_cov=43/27	new_cov=70/60	polymorphism_frequency=6.500e-01	polymorphism_score=201.8	prediction=polymorphism	ref_cov=43/27	total_cov=113/87
RA	585	.	Xen14_64	1217	0	A	G	bias_e_value=2171670	bias_p_value=0.437524	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.7	fisher_strand_p_value=0.305144	frequency=6.439e-01	ks_quality_p_value=0.496691	major_base=G	major_cov=71/61	major_frequency=6.439e-01	minor_base=A	minor_cov=45/28	new_cov=71/61	polymorphism_frequency=6.439e-01	polymorphism_score=151.0	prediction=polymorphism	ref_cov=45/28	total_cov=116/89
RA	586	.	Xen14_64	1331	0	G	A	bias_e_value=2362190	bias_p_value=0.475909	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.2	fisher_strand_p_value=0.174443	frequency=6.079e-01	ks_quality_p_value=0.989723	major_base=A	major_cov=74/64	major_frequency=6.079e-01	minor_base=G	minor_cov=39/50	new_cov=74/64	polymorphism_frequency=6.079e-01	polymorphism_score=190.6	prediction=polymorphism	ref_cov=39/50	total_cov=113/114
RA	587	.	Xen14_64	1339	0	A	G	bias_e_value=3527940	bias_p_value=0.710771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.344124	frequency=6.062e-01	ks_quality_p_value=0.998781	major_base=G	major_cov=69/68	major_frequency=6.062e-01	minor_base=A	minor_cov=39/50	new_cov=69/68	polymorphism_frequency=6.062e-01	polymorphism_score=190.0	prediction=polymorphism	ref_cov=39/50	total_cov=108/118
RA	588	.	Xen14_64	1364	0	G	A	bias_e_value=4932830	bias_p_value=0.993814	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=0.890856	frequency=5.826e-01	ks_quality_p_value=0.999997	major_base=A	major_cov=62/65	major_frequency=5.826e-01	minor_base=G	minor_cov=43/48	new_cov=62/65	polymorphism_frequency=5.826e-01	polymorphism_score=195.1	prediction=polymorphism	ref_cov=43/48	total_cov=105/113
RA	589	.	Xen14_64	1391	0	A	G	bias_e_value=3961900	bias_p_value=0.798201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.4	fisher_strand_p_value=0.436328	frequency=5.361e-01	ks_quality_p_value=1	major_base=G	major_cov=38/51	major_frequency=5.361e-01	minor_base=A	minor_cov=38/39	new_cov=38/51	polymorphism_frequency=5.361e-01	polymorphism_score=169.2	prediction=polymorphism	ref_cov=38/39	total_cov=76/90
RA	590	.	Xen14_64	1397	0	A	G	bias_e_value=3957750	bias_p_value=0.797364	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.6	fisher_strand_p_value=0.43532	frequency=5.276e-01	ks_quality_p_value=1	major_base=G	major_cov=38/48	major_frequency=5.276e-01	minor_base=A	minor_cov=39/38	new_cov=38/48	polymorphism_frequency=5.276e-01	polymorphism_score=171.3	prediction=polymorphism	ref_cov=39/38	total_cov=77/86
RA	591	.	Xen14_64	1457	0	C	T	bias_e_value=792613	bias_p_value=0.159687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.0	fisher_strand_p_value=0.431992	frequency=3.761e-01	ks_quality_p_value=0.0861444	major_base=C	major_cov=34/34	major_frequency=6.239e-01	minor_base=T	minor_cov=17/24	new_cov=17/24	polymorphism_frequency=3.761e-01	polymorphism_score=84.5	prediction=polymorphism	ref_cov=34/34	total_cov=51/58
RA	592	.	Xen14_64	1848	0	G	A	bias_e_value=2507430	bias_p_value=0.505169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.4	fisher_strand_p_value=0.74337	frequency=6.013e-01	ks_quality_p_value=0.255294	major_base=A	major_cov=55/40	major_frequency=6.013e-01	minor_base=G	minor_cov=34/29	new_cov=55/40	polymorphism_frequency=6.013e-01	polymorphism_score=131.6	prediction=polymorphism	ref_cov=34/29	total_cov=89/69
RA	593	.	Xen14_64	1893	0	C	T	bias_e_value=1332480	bias_p_value=0.268453	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.9	fisher_strand_p_value=0.876018	frequency=6.069e-01	ks_quality_p_value=0.0852548	major_base=T	major_cov=59/46	major_frequency=6.069e-01	minor_base=C	minor_cov=37/31	new_cov=59/46	polymorphism_frequency=6.069e-01	polymorphism_score=145.2	prediction=polymorphism	ref_cov=37/31	total_cov=96/77
RA	594	.	Xen14_64	1917	0	A	C	bias_e_value=3877980	bias_p_value=0.781293	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.4	fisher_strand_p_value=1	frequency=6.176e-01	ks_quality_p_value=0.416493	major_base=C	major_cov=59/46	major_frequency=6.176e-01	minor_base=A	minor_cov=37/28	new_cov=59/46	polymorphism_frequency=6.176e-01	polymorphism_score=177.4	prediction=polymorphism	ref_cov=37/28	total_cov=96/74
RA	595	.	Xen14_64	1935	0	A	G	bias_e_value=1135740	bias_p_value=0.228817	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.8	fisher_strand_p_value=0.493761	frequency=5.556e-01	ks_quality_p_value=0.121525	major_base=G	major_cov=46/34	major_frequency=5.556e-01	minor_base=A	minor_cov=41/23	new_cov=46/34	polymorphism_frequency=5.556e-01	polymorphism_score=140.8	prediction=polymorphism	ref_cov=41/23	total_cov=87/57
RA	596	.	Xen14_64	1942	0	T	C	bias_e_value=4748720	bias_p_value=0.956721	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.9	fisher_strand_p_value=0.720604	frequency=5.234e-01	ks_quality_p_value=1	major_base=C	major_cov=38/29	major_frequency=5.234e-01	minor_base=T	minor_cov=37/24	new_cov=38/29	polymorphism_frequency=5.234e-01	polymorphism_score=134.8	prediction=polymorphism	ref_cov=37/24	total_cov=75/53
RA	597	.	Xen14_64	1944	0	A	G	bias_e_value=1760000	bias_p_value=0.354586	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.2	fisher_strand_p_value=0.590446	frequency=5.312e-01	ks_quality_p_value=0.187673	major_base=G	major_cov=38/30	major_frequency=5.312e-01	minor_base=A	minor_cov=37/23	new_cov=38/30	polymorphism_frequency=5.312e-01	polymorphism_score=131.3	prediction=polymorphism	ref_cov=37/23	total_cov=75/53
RA	598	.	Xen14_64	1986	0	C	T	bias_e_value=2125100	bias_p_value=0.428141	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.6	fisher_strand_p_value=0.461303	frequency=2.211e-01	ks_quality_p_value=0.317866	major_base=C	major_cov=42/32	major_frequency=7.789e-01	minor_base=T	minor_cov=14/7	new_cov=14/7	polymorphism_frequency=2.211e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=42/32	total_cov=56/39
RA	599	.	Xen14_64	2382	0	A	T	bias_e_value=2792570	bias_p_value=0.562616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=0.226339	frequency=2.810e-01	ks_quality_p_value=1	major_base=A	major_cov=45/42	major_frequency=7.190e-01	minor_base=T	minor_cov=22/12	new_cov=22/12	polymorphism_frequency=2.810e-01	polymorphism_score=89.9	prediction=polymorphism	ref_cov=45/42	total_cov=68/54
RA	600	.	Xen14_65	17250	0	G	A	consensus_score=154.6	frequency=1	major_base=A	major_cov=22/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/35
RA	601	.	Xen14_66	10643	0	C	G	bias_e_value=0.0459527	bias_p_value=9.25805e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.0	fisher_strand_p_value=4.0935e-10	frequency=2.115e-01	ks_quality_p_value=1	major_base=C	major_cov=24/58	major_frequency=7.885e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.115e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=24/58	total_cov=61/58
RA	602	.	Xen14_69	9275	0	T	G	bias_e_value=2.13212	bias_p_value=4.29556e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.9	fisher_strand_p_value=2.31159e-08	frequency=2.066e-01	ks_quality_p_value=1	major_base=T	major_cov=55/41	major_frequency=7.934e-01	minor_base=G	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.066e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=55/41	total_cov=55/66
RA	603	.	Xen14_69	11048	0	A	C	bias_e_value=0.0677338	bias_p_value=1.36463e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.2	fisher_strand_p_value=6.14411e-10	frequency=3.205e-01	ks_quality_p_value=1	major_base=A	major_cov=16/37	major_frequency=6.795e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.205e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=16/37	total_cov=42/37
RA	604	.	Xen14_70	14163	0	G	A	bias_e_value=2243890	bias_p_value=0.452075	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.7	fisher_strand_p_value=0.467006	frequency=2.840e-01	ks_quality_p_value=0.34128	major_base=G	major_cov=27/31	major_frequency=7.160e-01	minor_base=A	minor_cov=13/10	new_cov=13/10	polymorphism_frequency=2.840e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=27/31	total_cov=40/41
RA	605	.	Xen14_70	14184	0	T	G	bias_e_value=3306490	bias_p_value=0.666155	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.3	fisher_strand_p_value=0.304146	frequency=4.211e-01	ks_quality_p_value=1	major_base=T	major_cov=24/31	major_frequency=5.789e-01	minor_base=G	minor_cov=22/18	new_cov=22/18	polymorphism_frequency=4.211e-01	polymorphism_score=118.8	prediction=polymorphism	ref_cov=24/31	total_cov=47/49
RA	606	.	Xen14_70	14188	0	T	C	bias_e_value=2197080	bias_p_value=0.442643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.6	fisher_strand_p_value=0.30413	frequency=4.082e-01	ks_quality_p_value=0.507311	major_base=T	major_cov=26/32	major_frequency=5.918e-01	minor_base=C	minor_cov=23/17	new_cov=23/17	polymorphism_frequency=4.082e-01	polymorphism_score=84.5	prediction=polymorphism	ref_cov=26/32	total_cov=49/49
RA	607	.	Xen14_70	14202	0	C	T	bias_e_value=1071730	bias_p_value=0.215921	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.1	fisher_strand_p_value=0.0554827	frequency=4.811e-01	ks_quality_p_value=1	major_base=C	major_cov=23/32	major_frequency=5.189e-01	minor_base=T	minor_cov=31/20	new_cov=31/20	polymorphism_frequency=4.811e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=23/32	total_cov=54/52
RA	608	.	Xen14_70	14208	0	A	G	bias_e_value=3565300	bias_p_value=0.718299	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.5	fisher_strand_p_value=0.350821	frequency=4.783e-01	ks_quality_p_value=1	major_base=A	major_cov=29/31	major_frequency=5.217e-01	minor_base=G	minor_cov=32/23	new_cov=32/23	polymorphism_frequency=4.783e-01	polymorphism_score=119.6	prediction=polymorphism	ref_cov=29/31	total_cov=61/54
RA	609	.	Xen14_70	14217	0	A	C	bias_e_value=2591300	bias_p_value=0.522068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=0.853485	frequency=5.593e-01	ks_quality_p_value=0.234465	major_base=C	major_cov=37/29	major_frequency=5.593e-01	minor_base=A	minor_cov=28/24	new_cov=37/29	polymorphism_frequency=5.593e-01	polymorphism_score=145.3	prediction=polymorphism	ref_cov=28/24	total_cov=65/53
RA	610	.	Xen14_70	14220	0	G	A	bias_e_value=781196	bias_p_value=0.157387	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.5	fisher_strand_p_value=1	frequency=5.556e-01	ks_quality_p_value=0.0365168	major_base=A	major_cov=36/29	major_frequency=5.556e-01	minor_base=G	minor_cov=28/24	new_cov=36/29	polymorphism_frequency=5.556e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=28/24	total_cov=65/53
RA	611	.	Xen14_70	14250	0	G	C	bias_e_value=365184	bias_p_value=0.0735734	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.7	fisher_strand_p_value=0.469873	frequency=6.966e-01	ks_quality_p_value=0.0297014	major_base=C	major_cov=52/49	major_frequency=6.966e-01	minor_base=G	minor_cov=26/18	new_cov=52/49	polymorphism_frequency=6.966e-01	polymorphism_score=132.4	prediction=polymorphism	ref_cov=26/18	total_cov=78/68
RA	612	.	Xen14_70	14259	0	C	G	bias_e_value=770202	bias_p_value=0.155172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.2	fisher_strand_p_value=0.281356	frequency=7.143e-01	ks_quality_p_value=0.127417	major_base=G	major_cov=58/52	major_frequency=7.143e-01	minor_base=C	minor_cov=28/16	new_cov=58/52	polymorphism_frequency=7.143e-01	polymorphism_score=130.5	prediction=polymorphism	ref_cov=28/16	total_cov=86/69
RA	613	.	Xen14_70	14316	0	A	T	bias_e_value=2893250	bias_p_value=0.582901	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.7	fisher_strand_p_value=0.852978	frequency=7.183e-01	ks_quality_p_value=0.28169	major_base=T	major_cov=51/51	major_frequency=7.183e-01	minor_base=A	minor_cov=21/19	new_cov=51/51	polymorphism_frequency=7.183e-01	polymorphism_score=107.1	prediction=polymorphism	ref_cov=21/19	total_cov=74/70
RA	614	.	Xen14_70	14319	0	G	A	bias_e_value=3112520	bias_p_value=0.627077	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.0	fisher_strand_p_value=1	frequency=7.273e-01	ks_quality_p_value=0.272727	major_base=A	major_cov=53/51	major_frequency=7.273e-01	minor_base=G	minor_cov=20/19	new_cov=53/51	polymorphism_frequency=7.273e-01	polymorphism_score=74.5	prediction=polymorphism	ref_cov=20/19	total_cov=74/70
RA	615	.	Xen14_70	14325	0	C	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.0	fisher_strand_p_value=1	frequency=7.153e-01	ks_quality_p_value=1	major_base=A	major_cov=51/47	major_frequency=7.153e-01	minor_base=C	minor_cov=20/19	new_cov=51/47	polymorphism_frequency=7.153e-01	polymorphism_score=105.7	prediction=polymorphism	ref_cov=20/19	total_cov=72/66
RA	616	.	Xen14_75	9248	0	A	G	bias_e_value=0.525613	bias_p_value=1.05895e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.6	fisher_strand_p_value=5.27903e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=21/49	major_frequency=7.778e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.222e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=21/49	total_cov=41/49
RA	617	.	Xen14_75	12913	0	G	A	bias_e_value=2818290	bias_p_value=0.567798	consensus_reject=FREQUENCY_CUTOFF	consensus_score=401.9	fisher_strand_p_value=0.229845	frequency=2.283e-01	ks_quality_p_value=1	major_base=G	major_cov=94/102	major_frequency=7.717e-01	minor_base=A	minor_cov=22/36	new_cov=22/36	polymorphism_frequency=2.283e-01	polymorphism_score=104.6	prediction=polymorphism	ref_cov=94/102	total_cov=116/138
RA	618	.	Xen14_75	12920	0	A	T	bias_e_value=3197530	bias_p_value=0.644203	consensus_reject=FREQUENCY_CUTOFF	consensus_score=502.4	fisher_strand_p_value=0.751973	frequency=2.125e-01	ks_quality_p_value=0.380544	major_base=A	major_cov=88/101	major_frequency=7.875e-01	minor_base=T	minor_cov=22/29	new_cov=22/29	polymorphism_frequency=2.125e-01	polymorphism_score=131.2	prediction=polymorphism	ref_cov=88/101	total_cov=110/130
RA	619	.	Xen14_76	12826	0	G	A	bias_e_value=260046	bias_p_value=0.0523913	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.7	fisher_strand_p_value=0.43877	frequency=3.023e-01	ks_quality_p_value=0.0209953	major_base=G	major_cov=36/54	major_frequency=6.977e-01	minor_base=A	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.023e-01	polymorphism_score=75.0	prediction=polymorphism	ref_cov=36/54	total_cov=55/74
RA	620	.	Xen14_76	12830	0	G	A	bias_e_value=1847420	bias_p_value=0.372198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.8	fisher_strand_p_value=0.447615	frequency=3.307e-01	ks_quality_p_value=0.265739	major_base=G	major_cov=35/50	major_frequency=6.693e-01	minor_base=A	minor_cov=21/21	new_cov=21/21	polymorphism_frequency=3.307e-01	polymorphism_score=79.9	prediction=polymorphism	ref_cov=35/50	total_cov=56/71
RA	621	.	Xen14_76	12843	0	C	T	bias_e_value=1877490	bias_p_value=0.378256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.4	fisher_strand_p_value=0.564681	frequency=3.932e-01	ks_quality_p_value=0.215715	major_base=C	major_cov=31/40	major_frequency=6.068e-01	minor_base=T	minor_cov=17/29	new_cov=17/29	polymorphism_frequency=3.932e-01	polymorphism_score=89.1	prediction=polymorphism	ref_cov=31/40	total_cov=49/71
RA	622	.	Xen14_76	12857	1	.	T	bias_e_value=4356680	bias_p_value=0.877737	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.548209	frequency=4.151e-01	ks_quality_p_value=1	major_base=.	major_cov=27/35	major_frequency=5.849e-01	minor_base=T	minor_cov=16/28	new_cov=16/28	polymorphism_frequency=4.151e-01	polymorphism_score=218.4	prediction=polymorphism	ref_cov=27/35	total_cov=43/63
RA	623	.	Xen14_78	6976	0	C	T	bias_e_value=5.95467e-11	bias_p_value=1.19968e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.9	fisher_strand_p_value=2.74275e-19	frequency=2.311e-01	ks_quality_p_value=1	major_base=C	major_cov=62/111	major_frequency=7.689e-01	minor_base=T	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=2.311e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=62/111	total_cov=122/111
RA	624	.	Xen14_79	78	0	T	C	bias_e_value=3022150	bias_p_value=0.60887	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=0.258985	frequency=5.067e-01	ks_quality_p_value=1	major_base=C	major_cov=35/41	major_frequency=5.067e-01	minor_base=T	minor_cov=41/33	new_cov=35/41	polymorphism_frequency=5.067e-01	polymorphism_score=168.8	prediction=polymorphism	ref_cov=41/33	total_cov=77/74
RA	625	.	Xen14_79	210	0	C	T	bias_e_value=3161460	bias_p_value=0.636936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.1	fisher_strand_p_value=0.280676	frequency=5.670e-01	ks_quality_p_value=0.999008	major_base=T	major_cov=65/62	major_frequency=5.670e-01	minor_base=C	minor_cov=42/55	new_cov=65/62	polymorphism_frequency=5.670e-01	polymorphism_score=214.7	prediction=polymorphism	ref_cov=42/55	total_cov=107/117
RA	626	.	Xen14_8	67793	0	C	G	bias_e_value=1.17209e-13	bias_p_value=2.3614e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.5	fisher_strand_p_value=4.71274e-22	frequency=2.963e-01	ks_quality_p_value=1	major_base=C	major_cov=27/87	major_frequency=7.037e-01	minor_base=G	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=2.963e-01	polymorphism_score=71.0	prediction=polymorphism	ref_cov=27/87	total_cov=88/87
RA	627	.	Xen14_8	100540	0	G	A	bias_e_value=11.7134	bias_p_value=2.35988e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.7	fisher_strand_p_value=1.40662e-07	frequency=2.129e-01	ks_quality_p_value=1	major_base=G	major_cov=61/61	major_frequency=7.871e-01	minor_base=A	minor_cov=1/32	new_cov=1/32	polymorphism_frequency=2.129e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=61/61	total_cov=62/93
RA	628	.	Xen14_82	3593	0	A	C	bias_e_value=3.16904	bias_p_value=6.38464e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.4	fisher_strand_p_value=3.51507e-08	frequency=2.133e-01	ks_quality_p_value=1	major_base=A	major_cov=15/44	major_frequency=7.867e-01	minor_base=C	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.133e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=15/44	total_cov=32/44
RA	629	.	Xen14_83	78	0	G	C	bias_e_value=1021230	bias_p_value=0.205746	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.6	fisher_strand_p_value=0.0520024	frequency=3.312e-01	ks_quality_p_value=1	major_base=G	major_cov=70/33	major_frequency=6.688e-01	minor_base=C	minor_cov=26/25	new_cov=26/25	polymorphism_frequency=3.312e-01	polymorphism_score=156.1	prediction=polymorphism	ref_cov=70/33	total_cov=97/58
RA	630	.	Xen14_83	91	0	T	C	bias_e_value=313812	bias_p_value=0.0632234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.0	fisher_strand_p_value=0.0115832	frequency=3.497e-01	ks_quality_p_value=1	major_base=T	major_cov=78/41	major_frequency=6.503e-01	minor_base=C	minor_cov=29/35	new_cov=29/35	polymorphism_frequency=3.497e-01	polymorphism_score=126.1	prediction=polymorphism	ref_cov=78/41	total_cov=107/76
RA	631	.	Xen14_83	11287	0	T	C	bias_e_value=2974950	bias_p_value=0.59936	consensus_score=73.3	fisher_strand_p_value=0.252016	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=9/21	major_frequency=9.091e-01	minor_base=T	minor_cov=2/1	new_cov=9/21	polymorphism_frequency=9.091e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=2/1	total_cov=11/22
RA	632	.	Xen14_83	11302	0	G	C	bias_e_value=3804630	bias_p_value=0.766516	consensus_score=29.1	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=5/9	major_frequency=9.333e-01	minor_base=T	minor_cov=1/0	new_cov=5/9	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	633	.	Xen14_83	11305	0	T	C	consensus_score=32.7	frequency=1	major_base=C	major_cov=6/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/9
RA	634	.	Xen14_83	11315	0	T	C	consensus_score=17.6	frequency=1	major_base=C	major_cov=6/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/3
RA	635	.	Xen14_85	2740	0	G	A	bias_e_value=4932280	bias_p_value=0.993702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.0	fisher_strand_p_value=0.894923	frequency=4.008e-01	ks_quality_p_value=0.99437	major_base=G	major_cov=72/70	major_frequency=5.992e-01	minor_base=A	minor_cov=47/48	new_cov=47/48	polymorphism_frequency=4.008e-01	polymorphism_score=206.4	prediction=polymorphism	ref_cov=72/70	total_cov=119/118
RA	636	.	Xen14_85	2917	0	C	T	bias_e_value=1235710	bias_p_value=0.248957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.6	fisher_strand_p_value=0.260715	frequency=3.027e-01	ks_quality_p_value=0.258195	major_base=C	major_cov=58/71	major_frequency=6.973e-01	minor_base=T	minor_cov=20/36	new_cov=20/36	polymorphism_frequency=3.027e-01	polymorphism_score=109.9	prediction=polymorphism	ref_cov=58/71	total_cov=78/108
RA	637	.	Xen14_85	2923	0	T	A	bias_e_value=427532	bias_p_value=0.0861346	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.2	fisher_strand_p_value=0.337006	frequency=3.102e-01	ks_quality_p_value=0.0503477	major_base=T	major_cov=58/71	major_frequency=6.898e-01	minor_base=A	minor_cov=21/37	new_cov=21/37	polymorphism_frequency=3.102e-01	polymorphism_score=160.2	prediction=polymorphism	ref_cov=58/71	total_cov=79/108
RA	638	.	Xen14_85	2935	0	C	A	bias_e_value=4823140	bias_p_value=0.971714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.5	fisher_strand_p_value=0.771781	frequency=3.510e-01	ks_quality_p_value=1	major_base=C	major_cov=63/72	major_frequency=6.490e-01	minor_base=A	minor_cov=36/37	new_cov=36/37	polymorphism_frequency=3.510e-01	polymorphism_score=192.2	prediction=polymorphism	ref_cov=63/72	total_cov=99/109
RA	639	.	Xen14_85	2938	0	G	C	bias_e_value=2424720	bias_p_value=0.488506	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.6	fisher_strand_p_value=0.884195	frequency=3.544e-01	ks_quality_p_value=0.203471	major_base=G	major_cov=63/70	major_frequency=6.456e-01	minor_base=C	minor_cov=36/37	new_cov=36/37	polymorphism_frequency=3.544e-01	polymorphism_score=228.8	prediction=polymorphism	ref_cov=63/70	total_cov=99/107
RA	640	.	Xen14_85	2942	0	A	G	bias_e_value=4822090	bias_p_value=0.971503	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.3	fisher_strand_p_value=0.770969	frequency=3.682e-01	ks_quality_p_value=1	major_base=A	major_cov=65/62	major_frequency=6.318e-01	minor_base=G	minor_cov=36/38	new_cov=36/38	polymorphism_frequency=3.682e-01	polymorphism_score=154.9	prediction=polymorphism	ref_cov=65/62	total_cov=101/100
RA	641	.	Xen14_85	2962	0	G	A	bias_e_value=4679480	bias_p_value=0.94277	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.5	fisher_strand_p_value=0.681351	frequency=3.652e-01	ks_quality_p_value=1	major_base=G	major_cov=78/68	major_frequency=6.348e-01	minor_base=A	minor_cov=42/42	new_cov=42/42	polymorphism_frequency=3.652e-01	polymorphism_score=173.5	prediction=polymorphism	ref_cov=78/68	total_cov=120/110
RA	642	.	Xen14_85	2965	0	A	G	bias_e_value=4382370	bias_p_value=0.882913	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.9	fisher_strand_p_value=0.783583	frequency=3.761e-01	ks_quality_p_value=0.710753	major_base=A	major_cov=75/66	major_frequency=6.239e-01	minor_base=G	minor_cov=43/42	new_cov=43/42	polymorphism_frequency=3.761e-01	polymorphism_score=182.3	prediction=polymorphism	ref_cov=75/66	total_cov=119/108
RA	643	.	Xen14_85	2969	0	T	C	bias_e_value=4423390	bias_p_value=0.891177	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.8	fisher_strand_p_value=0.58154	frequency=3.829e-01	ks_quality_p_value=0.982515	major_base=T	major_cov=75/62	major_frequency=6.171e-01	minor_base=C	minor_cov=43/42	new_cov=43/42	polymorphism_frequency=3.829e-01	polymorphism_score=181.3	prediction=polymorphism	ref_cov=75/62	total_cov=118/104
RA	644	.	Xen14_85	2971	0	C	G	bias_e_value=4170450	bias_p_value=0.840217	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.7	fisher_strand_p_value=0.490948	frequency=3.717e-01	ks_quality_p_value=1	major_base=C	major_cov=80/62	major_frequency=6.283e-01	minor_base=G	minor_cov=43/41	new_cov=43/41	polymorphism_frequency=3.717e-01	polymorphism_score=263.5	prediction=polymorphism	ref_cov=80/62	total_cov=124/104
RA	645	.	Xen14_85	2992	0	T	C	bias_e_value=3810970	bias_p_value=0.767793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.6	fisher_strand_p_value=0.414656	frequency=3.675e-01	ks_quality_p_value=0.968021	major_base=T	major_cov=86/62	major_frequency=6.325e-01	minor_base=C	minor_cov=45/41	new_cov=45/41	polymorphism_frequency=3.675e-01	polymorphism_score=181.2	prediction=polymorphism	ref_cov=86/62	total_cov=131/103
RA	646	.	Xen14_85	3019	0	G	A	bias_e_value=3093780	bias_p_value=0.623302	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.0	fisher_strand_p_value=0.269833	frequency=3.590e-01	ks_quality_p_value=1	major_base=G	major_cov=91/59	major_frequency=6.410e-01	minor_base=A	minor_cov=44/40	new_cov=44/40	polymorphism_frequency=3.590e-01	polymorphism_score=176.4	prediction=polymorphism	ref_cov=91/59	total_cov=135/99
RA	647	.	Xen14_85	3031	0	C	T	bias_e_value=2917160	bias_p_value=0.587717	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.6	fisher_strand_p_value=0.24384	frequency=3.551e-01	ks_quality_p_value=0.999302	major_base=C	major_cov=88/50	major_frequency=6.449e-01	minor_base=T	minor_cov=42/34	new_cov=42/34	polymorphism_frequency=3.551e-01	polymorphism_score=157.7	prediction=polymorphism	ref_cov=88/50	total_cov=130/84
RA	648	.	Xen14_85	6486	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.1	fisher_strand_p_value=1	frequency=4.649e-01	ks_quality_p_value=1	major_base=A	major_cov=64/58	major_frequency=5.351e-01	minor_base=G	minor_cov=56/50	new_cov=56/50	polymorphism_frequency=4.649e-01	polymorphism_score=232.6	prediction=polymorphism	ref_cov=64/58	total_cov=120/108
RA	649	.	Xen14_85	6588	0	T	C	bias_e_value=1971380	bias_p_value=0.397173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.7	fisher_strand_p_value=0.13787	frequency=6.768e-01	ks_quality_p_value=0.949842	major_base=C	major_cov=90/111	major_frequency=6.768e-01	minor_base=T	minor_cov=52/44	new_cov=90/111	polymorphism_frequency=6.768e-01	polymorphism_score=196.1	prediction=polymorphism	ref_cov=52/44	total_cov=143/155
RA	650	.	Xen14_85	6615	0	A	G	bias_e_value=3362550	bias_p_value=0.67745	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.2	fisher_strand_p_value=0.319291	frequency=6.608e-01	ks_quality_p_value=0.982683	major_base=G	major_cov=95/94	major_frequency=6.608e-01	minor_base=A	minor_cov=55/42	new_cov=95/94	polymorphism_frequency=6.608e-01	polymorphism_score=199.6	prediction=polymorphism	ref_cov=55/42	total_cov=150/136
RA	651	.	Xen14_85	6678	0	G	A	bias_e_value=4717650	bias_p_value=0.950461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.6	fisher_strand_p_value=0.702221	frequency=5.906e-01	ks_quality_p_value=1	major_base=A	major_cov=78/72	major_frequency=5.906e-01	minor_base=G	minor_cov=51/53	new_cov=78/72	polymorphism_frequency=5.906e-01	polymorphism_score=226.2	prediction=polymorphism	ref_cov=51/53	total_cov=129/125
RA	652	.	Xen14_85	6693	0	T	A	bias_e_value=2083480	bias_p_value=0.419757	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.4	fisher_strand_p_value=0.142892	frequency=5.531e-01	ks_quality_p_value=0.995853	major_base=A	major_cov=73/52	major_frequency=5.531e-01	minor_base=T	minor_cov=49/52	new_cov=73/52	polymorphism_frequency=5.531e-01	polymorphism_score=303.4	prediction=polymorphism	ref_cov=49/52	total_cov=122/105
RA	653	.	Xen14_85	6696	0	C	T	bias_e_value=3172560	bias_p_value=0.639172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.4	fisher_strand_p_value=0.282767	frequency=5.511e-01	ks_quality_p_value=0.997855	major_base=T	major_cov=71/53	major_frequency=5.511e-01	minor_base=C	minor_cov=50/51	new_cov=71/53	polymorphism_frequency=5.511e-01	polymorphism_score=221.4	prediction=polymorphism	ref_cov=50/51	total_cov=123/104
RA	654	.	Xen14_85	6698	0	G	T	bias_e_value=3162730	bias_p_value=0.637192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.1	fisher_strand_p_value=0.280599	frequency=5.516e-01	ks_quality_p_value=1	major_base=T	major_cov=70/53	major_frequency=5.516e-01	minor_base=G	minor_cov=49/51	new_cov=70/53	polymorphism_frequency=5.516e-01	polymorphism_score=305.4	prediction=polymorphism	ref_cov=49/51	total_cov=122/104
RA	655	.	Xen14_85	6699	0	G	T	bias_e_value=3168600	bias_p_value=0.638376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.6	fisher_strand_p_value=0.28662	frequency=5.487e-01	ks_quality_p_value=0.982248	major_base=T	major_cov=71/53	major_frequency=5.487e-01	minor_base=G	minor_cov=51/51	new_cov=71/53	polymorphism_frequency=5.487e-01	polymorphism_score=316.6	prediction=polymorphism	ref_cov=51/51	total_cov=122/104
RA	656	.	Xen14_85	6708	0	G	A	bias_e_value=3995530	bias_p_value=0.804977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.8	fisher_strand_p_value=0.444591	frequency=5.645e-01	ks_quality_p_value=1	major_base=A	major_cov=77/63	major_frequency=5.645e-01	minor_base=G	minor_cov=54/54	new_cov=77/63	polymorphism_frequency=5.645e-01	polymorphism_score=236.1	prediction=polymorphism	ref_cov=54/54	total_cov=131/117
RA	657	.	Xen14_85	6717	0	C	A	bias_e_value=4772490	bias_p_value=0.96151	consensus_reject=FREQUENCY_CUTOFF	consensus_score=412.7	fisher_strand_p_value=0.77352	frequency=2.757e-01	ks_quality_p_value=0.951105	major_base=C	major_cov=95/81	major_frequency=7.243e-01	minor_base=A	minor_cov=38/29	new_cov=38/29	polymorphism_frequency=2.757e-01	polymorphism_score=172.5	prediction=polymorphism	ref_cov=95/81	total_cov=133/110
RA	658	.	Xen14_85	6729	0	G	A	bias_e_value=2471570	bias_p_value=0.497945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.8	fisher_strand_p_value=0.18946	frequency=5.532e-01	ks_quality_p_value=0.978887	major_base=A	major_cov=77/53	major_frequency=5.532e-01	minor_base=G	minor_cov=53/52	new_cov=77/53	polymorphism_frequency=5.532e-01	polymorphism_score=234.5	prediction=polymorphism	ref_cov=53/52	total_cov=130/105
RA	659	.	Xen14_85	6744	0	A	C	bias_e_value=3049390	bias_p_value=0.614358	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.2	fisher_strand_p_value=0.27799	frequency=5.385e-01	ks_quality_p_value=0.946333	major_base=C	major_cov=71/48	major_frequency=5.385e-01	minor_base=A	minor_cov=53/49	new_cov=71/48	polymorphism_frequency=5.385e-01	polymorphism_score=290.6	prediction=polymorphism	ref_cov=53/49	total_cov=124/97
RA	660	.	Xen14_85	6766	0	A	C	bias_e_value=1778120	bias_p_value=0.358236	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.8	fisher_strand_p_value=0.114346	frequency=5.388e-01	ks_quality_p_value=0.983635	major_base=C	major_cov=74/51	major_frequency=5.388e-01	minor_base=A	minor_cov=52/55	new_cov=74/51	polymorphism_frequency=5.388e-01	polymorphism_score=307.3	prediction=polymorphism	ref_cov=52/55	total_cov=126/106
RA	661	.	Xen14_85	6783	0	G	C	bias_e_value=874060	bias_p_value=0.176096	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.1	fisher_strand_p_value=0.0431492	frequency=5.639e-01	ks_quality_p_value=0.980338	major_base=C	major_cov=79/49	major_frequency=5.639e-01	minor_base=G	minor_cov=47/52	new_cov=79/49	polymorphism_frequency=5.639e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=47/52	total_cov=126/101
RA	662	.	Xen14_85	6793	0	T	A	bias_e_value=1400820	bias_p_value=0.282223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.2	fisher_strand_p_value=0.0939513	frequency=5.569e-01	ks_quality_p_value=0.852198	major_base=A	major_cov=81/56	major_frequency=5.569e-01	minor_base=T	minor_cov=52/57	new_cov=81/56	polymorphism_frequency=5.569e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=52/57	total_cov=135/113
RA	663	.	Xen14_85	6804	0	T	C	bias_e_value=2186450	bias_p_value=0.440503	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.5	fisher_strand_p_value=0.156837	frequency=5.743e-01	ks_quality_p_value=0.976466	major_base=C	major_cov=85/58	major_frequency=5.743e-01	minor_base=T	minor_cov=53/53	new_cov=85/58	polymorphism_frequency=5.743e-01	polymorphism_score=233.8	prediction=polymorphism	ref_cov=53/53	total_cov=138/111
RA	664	.	Xen14_85	6821	0	C	T	bias_e_value=2578490	bias_p_value=0.519485	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.0	fisher_strand_p_value=0.198511	frequency=5.823e-01	ks_quality_p_value=1	major_base=T	major_cov=86/59	major_frequency=5.823e-01	minor_base=C	minor_cov=53/51	new_cov=86/59	polymorphism_frequency=5.823e-01	polymorphism_score=226.9	prediction=polymorphism	ref_cov=53/51	total_cov=139/111
RA	665	.	Xen14_85	6822	0	A	G	bias_e_value=1907890	bias_p_value=0.38438	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.7	fisher_strand_p_value=0.125472	frequency=5.731e-01	ks_quality_p_value=0.994129	major_base=G	major_cov=86/59	major_frequency=5.731e-01	minor_base=A	minor_cov=53/55	new_cov=86/59	polymorphism_frequency=5.731e-01	polymorphism_score=238.0	prediction=polymorphism	ref_cov=53/55	total_cov=139/114
RA	666	.	Xen14_85	6837	0	T	C	bias_e_value=1054960	bias_p_value=0.212542	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.6	fisher_strand_p_value=0.0543185	frequency=5.874e-01	ks_quality_p_value=1	major_base=C	major_cov=97/71	major_frequency=5.874e-01	minor_base=T	minor_cov=54/64	new_cov=97/71	polymorphism_frequency=5.874e-01	polymorphism_score=257.8	prediction=polymorphism	ref_cov=54/64	total_cov=151/135
RA	667	.	Xen14_85	6843	0	A	G	bias_e_value=1613630	bias_p_value=0.325097	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.1	fisher_strand_p_value=0.0993926	frequency=5.811e-01	ks_quality_p_value=0.983666	major_base=G	major_cov=95/77	major_frequency=5.811e-01	minor_base=A	minor_cov=56/68	new_cov=95/77	polymorphism_frequency=5.811e-01	polymorphism_score=272.7	prediction=polymorphism	ref_cov=56/68	total_cov=151/145
RA	668	.	Xen14_85	6852	0	C	T	bias_e_value=1088290	bias_p_value=0.219257	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.4	fisher_strand_p_value=0.0566403	frequency=5.848e-01	ks_quality_p_value=1	major_base=T	major_cov=97/72	major_frequency=5.848e-01	minor_base=C	minor_cov=55/65	new_cov=97/72	polymorphism_frequency=5.848e-01	polymorphism_score=263.1	prediction=polymorphism	ref_cov=55/65	total_cov=152/137
RA	669	.	Xen14_85	6858	0	A	G	bias_e_value=1335140	bias_p_value=0.268989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.2	fisher_strand_p_value=0.0748916	frequency=5.993e-01	ks_quality_p_value=1	major_base=G	major_cov=98/77	major_frequency=5.993e-01	minor_base=A	minor_cov=53/64	new_cov=98/77	polymorphism_frequency=5.993e-01	polymorphism_score=253.1	prediction=polymorphism	ref_cov=53/64	total_cov=151/141
RA	670	.	Xen14_85	6867	0	G	A	bias_e_value=3787500	bias_p_value=0.763064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.7	fisher_strand_p_value=0.40655	frequency=6.047e-01	ks_quality_p_value=0.97467	major_base=A	major_cov=95/84	major_frequency=6.047e-01	minor_base=G	minor_cov=56/61	new_cov=95/84	polymorphism_frequency=6.047e-01	polymorphism_score=253.4	prediction=polymorphism	ref_cov=56/61	total_cov=152/145
RA	671	.	Xen14_85	6876	0	C	T	bias_e_value=2853860	bias_p_value=0.574965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.3	fisher_strand_p_value=0.234938	frequency=6.213e-01	ks_quality_p_value=0.999221	major_base=T	major_cov=101/86	major_frequency=6.213e-01	minor_base=C	minor_cov=53/61	new_cov=101/86	polymorphism_frequency=6.213e-01	polymorphism_score=242.7	prediction=polymorphism	ref_cov=53/61	total_cov=154/147
RA	672	.	Xen14_85	6912	0	T	C	bias_e_value=4940450	bias_p_value=0.995348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.6	fisher_strand_p_value=0.905107	frequency=6.450e-01	ks_quality_p_value=1	major_base=C	major_cov=104/94	major_frequency=6.450e-01	minor_base=T	minor_cov=56/53	new_cov=104/94	polymorphism_frequency=6.450e-01	polymorphism_score=221.7	prediction=polymorphism	ref_cov=56/53	total_cov=160/148
RA	673	.	Xen14_85	6915	0	T	C	bias_e_value=4871330	bias_p_value=0.981423	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.2	fisher_strand_p_value=0.813544	frequency=6.387e-01	ks_quality_p_value=1	major_base=C	major_cov=104/94	major_frequency=6.387e-01	minor_base=T	minor_cov=57/55	new_cov=104/94	polymorphism_frequency=6.387e-01	polymorphism_score=229.7	prediction=polymorphism	ref_cov=57/55	total_cov=161/149
RA	674	.	Xen14_85	6926	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.3	fisher_strand_p_value=1	frequency=6.349e-01	ks_quality_p_value=1	major_base=T	major_cov=102/98	major_frequency=6.349e-01	minor_base=C	minor_cov=58/57	new_cov=102/98	polymorphism_frequency=6.349e-01	polymorphism_score=231.6	prediction=polymorphism	ref_cov=58/57	total_cov=160/155
RA	675	.	Xen14_85	6930	0	G	A	bias_e_value=4941740	bias_p_value=0.995608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.2	fisher_strand_p_value=0.907748	frequency=6.146e-01	ks_quality_p_value=1	major_base=A	major_cov=98/95	major_frequency=6.146e-01	minor_base=G	minor_cov=60/61	new_cov=98/95	polymorphism_frequency=6.146e-01	polymorphism_score=245.3	prediction=polymorphism	ref_cov=60/61	total_cov=158/156
RA	676	.	Xen14_85	6936	0	G	A	bias_e_value=4765180	bias_p_value=0.960036	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.3	fisher_strand_p_value=0.730946	frequency=6.188e-01	ks_quality_p_value=1	major_base=A	major_cov=100/98	major_frequency=6.188e-01	minor_base=G	minor_cov=59/63	new_cov=100/98	polymorphism_frequency=6.188e-01	polymorphism_score=247.9	prediction=polymorphism	ref_cov=59/63	total_cov=159/161
RA	677	.	Xen14_85	6978	0	C	T	bias_e_value=2560620	bias_p_value=0.515886	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.0	fisher_strand_p_value=0.196293	frequency=6.334e-01	ks_quality_p_value=1	major_base=T	major_cov=95/102	major_frequency=6.334e-01	minor_base=C	minor_cov=64/50	new_cov=95/102	polymorphism_frequency=6.334e-01	polymorphism_score=238.5	prediction=polymorphism	ref_cov=64/50	total_cov=159/152
RA	678	.	Xen14_85	6981	0	C	T	bias_e_value=1301140	bias_p_value=0.262139	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.7	fisher_strand_p_value=0.0722665	frequency=6.570e-01	ks_quality_p_value=1	major_base=T	major_cov=96/107	major_frequency=6.570e-01	minor_base=C	minor_cov=62/44	new_cov=96/107	polymorphism_frequency=6.570e-01	polymorphism_score=201.8	prediction=polymorphism	ref_cov=62/44	total_cov=158/151
RA	679	.	Xen14_85	7107	0	A	G	bias_e_value=834805	bias_p_value=0.168187	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.6	fisher_strand_p_value=0.121926	frequency=2.727e-01	ks_quality_p_value=0.326623	major_base=A	major_cov=84/52	major_frequency=7.273e-01	minor_base=G	minor_cov=38/13	new_cov=38/13	polymorphism_frequency=2.727e-01	polymorphism_score=99.1	prediction=polymorphism	ref_cov=84/52	total_cov=122/65
RA	680	.	Xen14_85	7116	0	G	A	bias_e_value=146441	bias_p_value=0.0295033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.3	fisher_strand_p_value=0.0948741	frequency=2.286e-01	ks_quality_p_value=0.0487744	major_base=G	major_cov=81/54	major_frequency=7.714e-01	minor_base=A	minor_cov=30/10	new_cov=30/10	polymorphism_frequency=2.286e-01	polymorphism_score=72.2	prediction=polymorphism	ref_cov=81/54	total_cov=111/65
RA	681	.	Xen14_85	7119	0	A	C	bias_e_value=874848	bias_p_value=0.176255	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.2	fisher_strand_p_value=0.0931911	frequency=2.286e-01	ks_quality_p_value=0.454454	major_base=A	major_cov=80/55	major_frequency=7.714e-01	minor_base=C	minor_cov=30/10	new_cov=30/10	polymorphism_frequency=2.286e-01	polymorphism_score=101.8	prediction=polymorphism	ref_cov=80/55	total_cov=111/65
RA	682	.	Xen14_85	7122	0	A	G	bias_e_value=1590480	bias_p_value=0.320433	consensus_reject=FREQUENCY_CUTOFF	consensus_score=325.0	fisher_strand_p_value=0.0957724	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=84/56	major_frequency=7.778e-01	minor_base=G	minor_cov=30/10	new_cov=30/10	polymorphism_frequency=2.222e-01	polymorphism_score=71.1	prediction=polymorphism	ref_cov=84/56	total_cov=115/66
RA	683	.	Xen14_85	7446	0	T	G	bias_e_value=1002440	bias_p_value=0.201961	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.6	fisher_strand_p_value=0.12177	frequency=2.349e-01	ks_quality_p_value=0.416584	major_base=T	major_cov=61/53	major_frequency=7.651e-01	minor_base=G	minor_cov=13/22	new_cov=13/22	polymorphism_frequency=2.349e-01	polymorphism_score=91.4	prediction=polymorphism	ref_cov=61/53	total_cov=74/75
RA	684	.	Xen14_85	7463	0	T	C	bias_e_value=26637.4	bias_p_value=0.00536661	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.6	fisher_strand_p_value=0.0127796	frequency=3.416e-01	ks_quality_p_value=0.0502929	major_base=T	major_cov=57/49	major_frequency=6.584e-01	minor_base=C	minor_cov=18/37	new_cov=18/37	polymorphism_frequency=3.416e-01	polymorphism_score=113.8	prediction=polymorphism	ref_cov=57/49	total_cov=75/86
RA	685	.	Xen14_85	7567	0	C	T	bias_e_value=2162470	bias_p_value=0.435671	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.1	fisher_strand_p_value=0.151483	frequency=5.404e-01	ks_quality_p_value=0.994048	major_base=T	major_cov=82/72	major_frequency=5.404e-01	minor_base=C	minor_cov=81/50	new_cov=82/72	polymorphism_frequency=5.404e-01	polymorphism_score=296.3	prediction=polymorphism	ref_cov=81/50	total_cov=163/124
RA	686	.	Xen14_85	7570	0	G	A	bias_e_value=2144600	bias_p_value=0.43207	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.4	fisher_strand_p_value=0.148977	frequency=5.477e-01	ks_quality_p_value=0.998051	major_base=A	major_cov=82/73	major_frequency=5.477e-01	minor_base=G	minor_cov=79/49	new_cov=82/73	polymorphism_frequency=5.477e-01	polymorphism_score=286.4	prediction=polymorphism	ref_cov=79/49	total_cov=161/122
RA	687	.	Xen14_85	7573	0	C	T	bias_e_value=2147340	bias_p_value=0.432623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.5	fisher_strand_p_value=0.148977	frequency=5.477e-01	ks_quality_p_value=1	major_base=T	major_cov=82/73	major_frequency=5.477e-01	minor_base=C	minor_cov=79/49	new_cov=82/73	polymorphism_frequency=5.477e-01	polymorphism_score=287.7	prediction=polymorphism	ref_cov=79/49	total_cov=161/122
RA	688	.	Xen14_85	7581	0	T	C	bias_e_value=4362110	bias_p_value=0.878832	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=0.550036	frequency=5.486e-01	ks_quality_p_value=1	major_base=C	major_cov=87/71	major_frequency=5.486e-01	minor_base=T	minor_cov=77/53	new_cov=87/71	polymorphism_frequency=5.486e-01	polymorphism_score=291.0	prediction=polymorphism	ref_cov=77/53	total_cov=164/124
RA	689	.	Xen14_85	7585	0	A	G	bias_e_value=2794470	bias_p_value=0.563	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.5	fisher_strand_p_value=0.226597	frequency=5.445e-01	ks_quality_p_value=1	major_base=G	major_cov=83/70	major_frequency=5.445e-01	minor_base=A	minor_cov=79/49	new_cov=83/70	polymorphism_frequency=5.445e-01	polymorphism_score=280.9	prediction=polymorphism	ref_cov=79/49	total_cov=162/119
RA	690	.	Xen14_85	7588	0	T	C	bias_e_value=2761970	bias_p_value=0.556451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.9	fisher_strand_p_value=0.22754	frequency=5.442e-01	ks_quality_p_value=0.976599	major_base=C	major_cov=84/70	major_frequency=5.442e-01	minor_base=T	minor_cov=80/49	new_cov=84/70	polymorphism_frequency=5.442e-01	polymorphism_score=291.1	prediction=polymorphism	ref_cov=80/49	total_cov=164/119
RA	691	.	Xen14_85	7609	0	A	G	bias_e_value=4308060	bias_p_value=0.867942	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.1	fisher_strand_p_value=0.632398	frequency=5.492e-01	ks_quality_p_value=0.84172	major_base=G	major_cov=96/66	major_frequency=5.492e-01	minor_base=A	minor_cov=83/50	new_cov=96/66	polymorphism_frequency=5.492e-01	polymorphism_score=299.3	prediction=polymorphism	ref_cov=83/50	total_cov=179/116
RA	692	.	Xen14_85	7645	0	T	C	bias_e_value=4813540	bias_p_value=0.969779	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=0.811677	frequency=5.786e-01	ks_quality_p_value=0.941812	major_base=C	major_cov=103/70	major_frequency=5.786e-01	minor_base=T	minor_cov=77/49	new_cov=103/70	polymorphism_frequency=5.786e-01	polymorphism_score=278.7	prediction=polymorphism	ref_cov=77/49	total_cov=180/120
RA	693	.	Xen14_85	7681	0	G	T	bias_e_value=4958960	bias_p_value=0.999077	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.6	fisher_strand_p_value=1	frequency=5.859e-01	ks_quality_p_value=0.957352	major_base=T	major_cov=101/90	major_frequency=5.859e-01	minor_base=G	minor_cov=71/64	new_cov=101/90	polymorphism_frequency=5.859e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/64	total_cov=173/154
RA	694	.	Xen14_85	7699	0	A	G	bias_e_value=3584130	bias_p_value=0.722092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.6	fisher_strand_p_value=0.442955	frequency=5.689e-01	ks_quality_p_value=0.800216	major_base=G	major_cov=108/86	major_frequency=5.689e-01	minor_base=A	minor_cov=75/72	new_cov=108/86	polymorphism_frequency=5.689e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=75/72	total_cov=183/160
RA	695	.	Xen14_85	7801	0	T	G	bias_e_value=3758530	bias_p_value=0.757227	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.9	fisher_strand_p_value=0.39	frequency=3.835e-01	ks_quality_p_value=1	major_base=T	major_cov=60/67	major_frequency=6.165e-01	minor_base=G	minor_cov=43/36	new_cov=43/36	polymorphism_frequency=3.835e-01	polymorphism_score=223.6	prediction=polymorphism	ref_cov=60/67	total_cov=103/103
RA	696	.	Xen14_85	7816	0	A	G	bias_e_value=622103	bias_p_value=0.125335	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=0.277051	frequency=3.352e-01	ks_quality_p_value=0.0982682	major_base=A	major_cov=55/66	major_frequency=6.648e-01	minor_base=G	minor_cov=33/28	new_cov=33/28	polymorphism_frequency=3.352e-01	polymorphism_score=125.6	prediction=polymorphism	ref_cov=55/66	total_cov=88/94
RA	697	.	Xen14_85	7828	0	A	G	bias_e_value=3436130	bias_p_value=0.692275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.8	fisher_strand_p_value=0.586435	frequency=2.308e-01	ks_quality_p_value=0.557234	major_base=A	major_cov=64/66	major_frequency=7.692e-01	minor_base=G	minor_cov=17/22	new_cov=17/22	polymorphism_frequency=2.308e-01	polymorphism_score=70.6	prediction=polymorphism	ref_cov=64/66	total_cov=81/88
RA	698	.	Xen14_85	8080	0	A	G	bias_e_value=4049440	bias_p_value=0.815838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.2	fisher_strand_p_value=0.45825	frequency=3.380e-01	ks_quality_p_value=0.999992	major_base=A	major_cov=90/51	major_frequency=6.620e-01	minor_base=G	minor_cov=42/30	new_cov=42/30	polymorphism_frequency=3.380e-01	polymorphism_score=147.1	prediction=polymorphism	ref_cov=90/51	total_cov=132/81
RA	699	.	Xen14_85	8082	0	C	A	bias_e_value=4027130	bias_p_value=0.811343	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.9	fisher_strand_p_value=0.454984	frequency=3.396e-01	ks_quality_p_value=0.994609	major_base=C	major_cov=90/50	major_frequency=6.604e-01	minor_base=A	minor_cov=42/30	new_cov=42/30	polymorphism_frequency=3.396e-01	polymorphism_score=188.6	prediction=polymorphism	ref_cov=90/50	total_cov=132/80
RA	700	.	Xen14_85	8169	0	C	A	bias_e_value=4184560	bias_p_value=0.843059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.3	fisher_strand_p_value=0.494966	frequency=4.318e-01	ks_quality_p_value=1	major_base=C	major_cov=71/54	major_frequency=5.682e-01	minor_base=A	minor_cov=49/46	new_cov=49/46	polymorphism_frequency=4.318e-01	polymorphism_score=258.4	prediction=polymorphism	ref_cov=71/54	total_cov=120/100
RA	701	.	Xen14_86	362	0	A	C	bias_e_value=1644610	bias_p_value=0.331338	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=0.211163	frequency=6.187e-01	ks_quality_p_value=0.47579	major_base=C	major_cov=48/38	major_frequency=6.187e-01	minor_base=A	minor_cov=36/17	new_cov=48/38	polymorphism_frequency=6.187e-01	polymorphism_score=143.5	prediction=polymorphism	ref_cov=36/17	total_cov=84/55
RA	702	.	Xen14_86	375	0	G	A	bias_e_value=1111710	bias_p_value=0.223975	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=0.0582922	frequency=6.144e-01	ks_quality_p_value=1	major_base=A	major_cov=53/41	major_frequency=6.144e-01	minor_base=G	minor_cov=43/16	new_cov=53/41	polymorphism_frequency=6.144e-01	polymorphism_score=123.3	prediction=polymorphism	ref_cov=43/16	total_cov=96/57
RA	703	.	Xen14_86	385	0	C	A	bias_e_value=229065	bias_p_value=0.0461496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.3	fisher_strand_p_value=0.00790136	frequency=6.347e-01	ks_quality_p_value=1	major_base=A	major_cov=57/49	major_frequency=6.347e-01	minor_base=C	minor_cov=46/15	new_cov=57/49	polymorphism_frequency=6.347e-01	polymorphism_score=176.8	prediction=polymorphism	ref_cov=46/15	total_cov=103/64
RA	704	.	Xen14_86	563	0	A	T	bias_e_value=1964790	bias_p_value=0.395844	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.5	fisher_strand_p_value=0.214461	frequency=5.422e-01	ks_quality_p_value=0.607578	major_base=T	major_cov=43/47	major_frequency=5.422e-01	minor_base=A	minor_cov=44/32	new_cov=43/47	polymorphism_frequency=5.422e-01	polymorphism_score=228.4	prediction=polymorphism	ref_cov=44/32	total_cov=87/79
RA	705	.	Xen14_86	3435	0	A	C	bias_e_value=1315690	bias_p_value=0.265072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.3	fisher_strand_p_value=0.0733859	frequency=5.397e-01	ks_quality_p_value=1	major_base=C	major_cov=27/41	major_frequency=5.397e-01	minor_base=A	minor_cov=33/25	new_cov=27/41	polymorphism_frequency=5.397e-01	polymorphism_score=161.4	prediction=polymorphism	ref_cov=33/25	total_cov=60/66
RA	706	.	Xen14_86	9105	0	G	C	bias_e_value=2910660	bias_p_value=0.586409	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=0.572315	frequency=2.394e-01	ks_quality_p_value=0.424145	major_base=G	major_cov=36/18	major_frequency=7.606e-01	minor_base=C	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.394e-01	polymorphism_score=46.0	prediction=polymorphism	ref_cov=36/18	total_cov=46/26
RA	707	.	Xen14_86	9216	0	A	G	bias_e_value=207701	bias_p_value=0.0418454	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.8	fisher_strand_p_value=0.0289596	frequency=4.895e-01	ks_quality_p_value=0.242499	major_base=A	major_cov=48/25	major_frequency=5.105e-01	minor_base=G	minor_cov=33/37	new_cov=33/37	polymorphism_frequency=4.895e-01	polymorphism_score=157.0	prediction=polymorphism	ref_cov=48/25	total_cov=81/62
RA	708	.	Xen14_86	9243	0	A	G	bias_e_value=1062120	bias_p_value=0.213984	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.6	fisher_strand_p_value=0.0928587	frequency=5.455e-01	ks_quality_p_value=0.590297	major_base=G	major_cov=35/43	major_frequency=5.455e-01	minor_base=A	minor_cov=39/26	new_cov=35/43	polymorphism_frequency=5.455e-01	polymorphism_score=145.1	prediction=polymorphism	ref_cov=39/26	total_cov=75/69
RA	709	.	Xen14_86	9278	0	G	T	bias_e_value=1513440	bias_p_value=0.304912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.4	fisher_strand_p_value=0.360221	frequency=4.912e-01	ks_quality_p_value=0.247772	major_base=G	major_cov=48/39	major_frequency=5.088e-01	minor_base=T	minor_cov=40/44	new_cov=40/44	polymorphism_frequency=4.912e-01	polymorphism_score=240.3	prediction=polymorphism	ref_cov=48/39	total_cov=89/83
RA	710	.	Xen14_86	9295	0	G	A	bias_e_value=125027	bias_p_value=0.025189	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=0.187554	frequency=4.652e-01	ks_quality_p_value=0.0204644	major_base=G	major_cov=54/46	major_frequency=5.348e-01	minor_base=A	minor_cov=38/49	new_cov=38/49	polymorphism_frequency=4.652e-01	polymorphism_score=196.7	prediction=polymorphism	ref_cov=54/46	total_cov=92/95
RA	711	.	Xen14_86	9425	0	T	C	bias_e_value=2008890	bias_p_value=0.404729	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.5	fisher_strand_p_value=0.293131	frequency=5.419e-01	ks_quality_p_value=0.459513	major_base=C	major_cov=50/47	major_frequency=5.419e-01	minor_base=T	minor_cov=35/47	new_cov=50/47	polymorphism_frequency=5.419e-01	polymorphism_score=181.5	prediction=polymorphism	ref_cov=35/47	total_cov=85/94
RA	712	.	Xen14_86	9448	0	T	A	bias_e_value=13353.5	bias_p_value=0.00269032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.1	fisher_strand_p_value=0.00367078	frequency=5.290e-01	ks_quality_p_value=0.0802774	major_base=A	major_cov=49/33	major_frequency=5.290e-01	minor_base=T	minor_cov=26/47	new_cov=49/33	polymorphism_frequency=5.290e-01	polymorphism_score=220.2	prediction=polymorphism	ref_cov=26/47	total_cov=75/80
RA	713	.	Xen14_86	9457	0	G	A	bias_e_value=789206	bias_p_value=0.159001	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.0	fisher_strand_p_value=0.0370054	frequency=4.936e-01	ks_quality_p_value=1	major_base=G	major_cov=32/47	major_frequency=5.064e-01	minor_base=A	minor_cov=45/32	new_cov=45/32	polymorphism_frequency=4.936e-01	polymorphism_score=169.3	prediction=polymorphism	ref_cov=32/47	total_cov=77/79
RA	714	.	Xen14_86	9472	0	C	T	bias_e_value=2047270	bias_p_value=0.412461	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.0	fisher_strand_p_value=0.138582	frequency=4.865e-01	ks_quality_p_value=1	major_base=C	major_cov=33/43	major_frequency=5.135e-01	minor_base=T	minor_cov=41/31	new_cov=41/31	polymorphism_frequency=4.865e-01	polymorphism_score=159.5	prediction=polymorphism	ref_cov=33/43	total_cov=74/74
RA	715	.	Xen14_86	9473	0	A	G	bias_e_value=2047270	bias_p_value=0.412461	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.1	fisher_strand_p_value=0.138582	frequency=4.865e-01	ks_quality_p_value=1	major_base=A	major_cov=33/43	major_frequency=5.135e-01	minor_base=G	minor_cov=41/31	new_cov=41/31	polymorphism_frequency=4.865e-01	polymorphism_score=160.5	prediction=polymorphism	ref_cov=33/43	total_cov=74/74
RA	716	.	Xen14_86	9497	0	C	T	bias_e_value=707060	bias_p_value=0.142451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=0.0547788	frequency=4.459e-01	ks_quality_p_value=0.585792	major_base=C	major_cov=41/46	major_frequency=5.541e-01	minor_base=T	minor_cov=44/26	new_cov=44/26	polymorphism_frequency=4.459e-01	polymorphism_score=154.0	prediction=polymorphism	ref_cov=41/46	total_cov=85/72
RA	717	.	Xen14_86	9575	0	G	A	bias_e_value=1655050	bias_p_value=0.333442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.3	fisher_strand_p_value=0.637002	frequency=3.882e-01	ks_quality_p_value=0.159163	major_base=G	major_cov=50/54	major_frequency=6.118e-01	minor_base=A	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=3.882e-01	polymorphism_score=140.6	prediction=polymorphism	ref_cov=50/54	total_cov=85/85
RA	718	.	Xen14_86	9600	0	G	A	bias_e_value=3703240	bias_p_value=0.746088	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.6	fisher_strand_p_value=0.881236	frequency=4.293e-01	ks_quality_p_value=0.429348	major_base=G	major_cov=47/58	major_frequency=5.707e-01	minor_base=A	minor_cov=37/42	new_cov=37/42	polymorphism_frequency=4.293e-01	polymorphism_score=174.4	prediction=polymorphism	ref_cov=47/58	total_cov=84/100
RA	719	.	Xen14_86	9637	0	C	T	bias_e_value=2372250	bias_p_value=0.477936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.5	fisher_strand_p_value=1	frequency=4.186e-01	ks_quality_p_value=0.173807	major_base=C	major_cov=39/61	major_frequency=5.814e-01	minor_base=T	minor_cov=28/44	new_cov=28/44	polymorphism_frequency=4.186e-01	polymorphism_score=157.2	prediction=polymorphism	ref_cov=39/61	total_cov=67/105
RA	720	.	Xen14_86	9645	0	C	T	bias_e_value=1874440	bias_p_value=0.377641	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.1	fisher_strand_p_value=1	frequency=4.438e-01	ks_quality_p_value=0.121518	major_base=C	major_cov=34/60	major_frequency=5.562e-01	minor_base=T	minor_cov=28/47	new_cov=28/47	polymorphism_frequency=4.438e-01	polymorphism_score=165.7	prediction=polymorphism	ref_cov=34/60	total_cov=63/107
RA	721	.	Xen14_86	9674	0	G	T	bias_e_value=3717790	bias_p_value=0.74902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.1	fisher_strand_p_value=1	frequency=4.785e-01	ks_quality_p_value=0.381386	major_base=G	major_cov=29/56	major_frequency=5.215e-01	minor_base=T	minor_cov=27/51	new_cov=27/51	polymorphism_frequency=4.785e-01	polymorphism_score=225.3	prediction=polymorphism	ref_cov=29/56	total_cov=56/107
RA	722	.	Xen14_86	9694	0	T	C	bias_e_value=2846830	bias_p_value=0.573548	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.7	fisher_strand_p_value=1	frequency=5.161e-01	ks_quality_p_value=0.233778	major_base=C	major_cov=26/54	major_frequency=5.161e-01	minor_base=T	minor_cov=25/50	new_cov=26/54	polymorphism_frequency=5.161e-01	polymorphism_score=167.9	prediction=polymorphism	ref_cov=25/50	total_cov=51/104
RA	723	.	Xen14_86	9713	0	A	G	bias_e_value=2393600	bias_p_value=0.482238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.587292	frequency=5.303e-01	ks_quality_p_value=0.300149	major_base=G	major_cov=26/44	major_frequency=5.303e-01	minor_base=A	minor_cov=20/42	new_cov=26/44	polymorphism_frequency=5.303e-01	polymorphism_score=136.1	prediction=polymorphism	ref_cov=20/42	total_cov=46/86
RA	724	.	Xen14_86	9720	0	G	C	bias_e_value=4022960	bias_p_value=0.810502	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=0.853505	frequency=5.267e-01	ks_quality_p_value=0.528964	major_base=C	major_cov=24/45	major_frequency=5.267e-01	minor_base=G	minor_cov=20/42	new_cov=24/45	polymorphism_frequency=5.267e-01	polymorphism_score=203.5	prediction=polymorphism	ref_cov=20/42	total_cov=44/87
RA	725	.	Xen14_86	9799	0	A	G	bias_e_value=3945920	bias_p_value=0.794981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.4	fisher_strand_p_value=1	frequency=6.045e-01	ks_quality_p_value=0.432465	major_base=G	major_cov=35/46	major_frequency=6.045e-01	minor_base=A	minor_cov=23/30	new_cov=35/46	polymorphism_frequency=6.045e-01	polymorphism_score=112.5	prediction=polymorphism	ref_cov=23/30	total_cov=58/76
RA	726	.	Xen14_86	9813	0	G	T	bias_e_value=4907730	bias_p_value=0.988756	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.8	fisher_strand_p_value=0.85384	frequency=5.984e-01	ks_quality_p_value=1	major_base=T	major_cov=30/43	major_frequency=5.984e-01	minor_base=G	minor_cov=21/28	new_cov=30/43	polymorphism_frequency=5.984e-01	polymorphism_score=144.2	prediction=polymorphism	ref_cov=21/28	total_cov=51/71
RA	727	.	Xen14_86	10135	0	C	G	bias_e_value=2496870	bias_p_value=0.503042	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.3	fisher_strand_p_value=0.388581	frequency=2.685e-01	ks_quality_p_value=0.485099	major_base=C	major_cov=41/38	major_frequency=7.315e-01	minor_base=G	minor_cov=12/17	new_cov=12/17	polymorphism_frequency=2.685e-01	polymorphism_score=83.5	prediction=polymorphism	ref_cov=41/38	total_cov=53/56
RA	728	.	Xen14_87	7371	0	T	G	bias_e_value=1.09178e-19	bias_p_value=2.19961e-26	consensus_reject=FREQUENCY_CUTOFF	consensus_score=368.9	fisher_strand_p_value=3.42396e-28	frequency=2.616e-01	ks_quality_p_value=1	major_base=T	major_cov=111/16	major_frequency=7.384e-01	minor_base=G	minor_cov=0/45	new_cov=0/45	polymorphism_frequency=2.616e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=111/16	total_cov=111/67
RA	729	.	Xen14_88	78	0	A	G	bias_e_value=8664.43	bias_p_value=0.00174562	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.6	fisher_strand_p_value=0.000181573	frequency=4.878e-01	ks_quality_p_value=1	major_base=A	major_cov=28/14	major_frequency=5.122e-01	minor_base=G	minor_cov=10/30	new_cov=10/30	polymorphism_frequency=4.878e-01	polymorphism_score=86.3	prediction=polymorphism	ref_cov=28/14	total_cov=38/44
RA	730	.	Xen14_88	96	0	A	T	bias_e_value=3131.35	bias_p_value=0.00063087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.8	fisher_strand_p_value=0.000146209	frequency=4.348e-01	ks_quality_p_value=0.401656	major_base=A	major_cov=34/18	major_frequency=5.652e-01	minor_base=T	minor_cov=10/30	new_cov=10/30	polymorphism_frequency=4.348e-01	polymorphism_score=116.7	prediction=polymorphism	ref_cov=34/18	total_cov=44/48
RA	731	.	Xen14_88	99	0	C	T	bias_e_value=137.347	bias_p_value=2.76712e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=0.000146209	frequency=4.348e-01	ks_quality_p_value=0.0133804	major_base=C	major_cov=34/18	major_frequency=5.652e-01	minor_base=T	minor_cov=10/30	new_cov=10/30	polymorphism_frequency=4.348e-01	polymorphism_score=85.8	prediction=polymorphism	ref_cov=34/18	total_cov=44/48
RA	732	.	Xen14_88	111	0	A	C	bias_e_value=8755.8	bias_p_value=0.00176402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.5	fisher_strand_p_value=0.000183711	frequency=3.939e-01	ks_quality_p_value=1	major_base=A	major_cov=39/21	major_frequency=6.061e-01	minor_base=C	minor_cov=10/29	new_cov=10/29	polymorphism_frequency=3.939e-01	polymorphism_score=113.2	prediction=polymorphism	ref_cov=39/21	total_cov=49/50
RA	733	.	Xen14_88	114	0	G	A	bias_e_value=4287.19	bias_p_value=0.000863737	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=8.30866e-05	frequency=4.040e-01	ks_quality_p_value=1	major_base=G	major_cov=39/20	major_frequency=5.960e-01	minor_base=A	minor_cov=10/30	new_cov=10/30	polymorphism_frequency=4.040e-01	polymorphism_score=84.6	prediction=polymorphism	ref_cov=39/20	total_cov=49/50
RA	734	.	Xen14_88	129	0	T	G	bias_e_value=2302.07	bias_p_value=0.000463797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.5	fisher_strand_p_value=9.2453e-05	frequency=3.585e-01	ks_quality_p_value=0.452705	major_base=T	major_cov=44/24	major_frequency=6.415e-01	minor_base=G	minor_cov=9/29	new_cov=9/29	polymorphism_frequency=3.585e-01	polymorphism_score=108.2	prediction=polymorphism	ref_cov=44/24	total_cov=53/53
RA	735	.	Xen14_88	130	0	A	G	bias_e_value=2248.26	bias_p_value=0.000452955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.0	fisher_strand_p_value=9.2453e-05	frequency=3.585e-01	ks_quality_p_value=0.441088	major_base=A	major_cov=44/24	major_frequency=6.415e-01	minor_base=G	minor_cov=9/29	new_cov=9/29	polymorphism_frequency=3.585e-01	polymorphism_score=76.9	prediction=polymorphism	ref_cov=44/24	total_cov=53/53
RA	736	.	Xen14_88	131	0	T	C	bias_e_value=1541.3	bias_p_value=0.000310525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.4	fisher_strand_p_value=9.2453e-05	frequency=3.585e-01	ks_quality_p_value=0.29152	major_base=T	major_cov=44/24	major_frequency=6.415e-01	minor_base=C	minor_cov=9/29	new_cov=9/29	polymorphism_frequency=3.585e-01	polymorphism_score=77.9	prediction=polymorphism	ref_cov=44/24	total_cov=53/53
RA	737	.	Xen14_88	135	0	C	A	bias_e_value=70.3281	bias_p_value=1.41689e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.2	fisher_strand_p_value=4.6071e-05	frequency=3.551e-01	ks_quality_p_value=0.0206915	major_base=C	major_cov=45/24	major_frequency=6.449e-01	minor_base=A	minor_cov=9/29	new_cov=9/29	polymorphism_frequency=3.551e-01	polymorphism_score=100.5	prediction=polymorphism	ref_cov=45/24	total_cov=54/53
RA	738	.	Xen14_88	9197	0	T	C	bias_e_value=378584	bias_p_value=0.0762731	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.3	fisher_strand_p_value=0.0946455	frequency=3.958e-01	ks_quality_p_value=0.154167	major_base=T	major_cov=24/34	major_frequency=6.042e-01	minor_base=C	minor_cov=23/15	new_cov=23/15	polymorphism_frequency=3.958e-01	polymorphism_score=79.7	prediction=polymorphism	ref_cov=24/34	total_cov=47/49
RA	739	.	Xen14_88	9245	0	C	T	bias_e_value=787088	bias_p_value=0.158574	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.3	fisher_strand_p_value=0.099858	frequency=6.989e-01	ks_quality_p_value=0.369284	major_base=T	major_cov=69/54	major_frequency=6.989e-01	minor_base=C	minor_cov=22/31	new_cov=69/54	polymorphism_frequency=6.989e-01	polymorphism_score=103.7	prediction=polymorphism	ref_cov=22/31	total_cov=91/85
RA	740	.	Xen14_88	9286	0	C	T	bias_e_value=1156400	bias_p_value=0.232979	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.4	fisher_strand_p_value=0.0616196	frequency=6.232e-01	ks_quality_p_value=0.997902	major_base=T	major_cov=103/69	major_frequency=6.232e-01	minor_base=C	minor_cov=50/54	new_cov=103/69	polymorphism_frequency=6.232e-01	polymorphism_score=219.4	prediction=polymorphism	ref_cov=50/54	total_cov=154/123
RA	741	.	Xen14_88	9314	0	G	A	bias_e_value=1431130	bias_p_value=0.288329	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.8	fisher_strand_p_value=0.159552	frequency=6.606e-01	ks_quality_p_value=0.517061	major_base=A	major_cov=127/89	major_frequency=6.606e-01	minor_base=G	minor_cov=56/55	new_cov=127/89	polymorphism_frequency=6.606e-01	polymorphism_score=229.2	prediction=polymorphism	ref_cov=56/55	total_cov=184/144
RA	742	.	Xen14_88	9601	0	A	T	bias_e_value=1459140	bias_p_value=0.293972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.9	fisher_strand_p_value=0.338038	frequency=2.449e-01	ks_quality_p_value=0.250777	major_base=A	major_cov=31/43	major_frequency=7.551e-01	minor_base=T	minor_cov=7/17	new_cov=7/17	polymorphism_frequency=2.449e-01	polymorphism_score=60.6	prediction=polymorphism	ref_cov=31/43	total_cov=38/60
RA	743	.	Xen14_88	9657	0	G	A	bias_e_value=526003	bias_p_value=0.105973	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.5	fisher_strand_p_value=0.0473355	frequency=2.188e-01	ks_quality_p_value=0.464799	major_base=G	major_cov=38/37	major_frequency=7.812e-01	minor_base=A	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=2.188e-01	polymorphism_score=33.3	prediction=polymorphism	ref_cov=38/37	total_cov=54/42
RA	744	.	Xen14_88	9744	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.2	fisher_strand_p_value=1	frequency=5.035e-01	ks_quality_p_value=1	major_base=G	major_cov=35/36	major_frequency=5.035e-01	minor_base=A	minor_cov=34/36	new_cov=35/36	polymorphism_frequency=5.035e-01	polymorphism_score=156.9	prediction=polymorphism	ref_cov=34/36	total_cov=69/72
RA	745	.	Xen14_88	9749	0	A	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.4	fisher_strand_p_value=1	frequency=5.035e-01	ks_quality_p_value=1	major_base=C	major_cov=35/36	major_frequency=5.035e-01	minor_base=A	minor_cov=34/36	new_cov=35/36	polymorphism_frequency=5.035e-01	polymorphism_score=200.9	prediction=polymorphism	ref_cov=34/36	total_cov=69/72
RA	746	.	Xen14_88	9756	0	T	G	bias_e_value=4782590	bias_p_value=0.963544	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.1	fisher_strand_p_value=0.742425	frequency=5.170e-01	ks_quality_p_value=1	major_base=G	major_cov=40/36	major_frequency=5.170e-01	minor_base=T	minor_cov=35/36	new_cov=40/36	polymorphism_frequency=5.170e-01	polymorphism_score=197.4	prediction=polymorphism	ref_cov=35/36	total_cov=75/72
RA	747	.	Xen14_88	9783	0	T	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.2	fisher_strand_p_value=1	frequency=5.503e-01	ks_quality_p_value=1	major_base=G	major_cov=36/46	major_frequency=5.503e-01	minor_base=T	minor_cov=29/38	new_cov=36/46	polymorphism_frequency=5.503e-01	polymorphism_score=188.5	prediction=polymorphism	ref_cov=29/38	total_cov=65/84
RA	748	.	Xen14_88	9823	0	G	T	bias_e_value=755026	bias_p_value=0.152114	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.1	fisher_strand_p_value=0.460779	frequency=4.667e-01	ks_quality_p_value=0.075816	major_base=G	major_cov=24/40	major_frequency=5.333e-01	minor_base=T	minor_cov=25/31	new_cov=25/31	polymorphism_frequency=4.667e-01	polymorphism_score=158.6	prediction=polymorphism	ref_cov=24/40	total_cov=49/71
RA	749	.	Xen14_88	9825	0	T	A	bias_e_value=1833450	bias_p_value=0.369384	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.1	fisher_strand_p_value=0.5825	frequency=4.516e-01	ks_quality_p_value=0.201941	major_base=T	major_cov=26/42	major_frequency=5.484e-01	minor_base=A	minor_cov=25/31	new_cov=25/31	polymorphism_frequency=4.516e-01	polymorphism_score=166.5	prediction=polymorphism	ref_cov=26/42	total_cov=51/73
RA	750	.	Xen14_88	9843	0	G	T	bias_e_value=406621	bias_p_value=0.0819216	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.3	fisher_strand_p_value=0.263294	frequency=4.250e-01	ks_quality_p_value=0.0605471	major_base=G	major_cov=26/43	major_frequency=5.750e-01	minor_base=T	minor_cov=25/26	new_cov=25/26	polymorphism_frequency=4.250e-01	polymorphism_score=140.4	prediction=polymorphism	ref_cov=26/43	total_cov=51/69
RA	751	.	Xen14_9	55920	0	A	C	bias_e_value=4.15505e-13	bias_p_value=8.37115e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.8	fisher_strand_p_value=1.71488e-21	frequency=2.652e-01	ks_quality_p_value=1	major_base=A	major_cov=13/84	major_frequency=7.348e-01	minor_base=C	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.652e-01	polymorphism_score=38.0	prediction=polymorphism	ref_cov=13/84	total_cov=48/84
RA	752	.	Xen14_94	2606	0	C	G	bias_e_value=673.398	bias_p_value=0.000135669	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.0	fisher_strand_p_value=1.0919e-05	frequency=2.549e-01	ks_quality_p_value=1	major_base=C	major_cov=12/26	major_frequency=7.451e-01	minor_base=G	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.549e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=12/26	total_cov=28/26
RA	753	.	Xen14_96	3247	0	C	T	bias_e_value=1075390	bias_p_value=0.216658	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.2	fisher_strand_p_value=0.231115	frequency=2.388e-01	ks_quality_p_value=0.241168	major_base=C	major_cov=51/51	major_frequency=7.612e-01	minor_base=T	minor_cov=20/12	new_cov=20/12	polymorphism_frequency=2.388e-01	polymorphism_score=57.8	prediction=polymorphism	ref_cov=51/51	total_cov=71/63
RA	754	.	Xen14_96	3372	0	C	A	bias_e_value=1697180	bias_p_value=0.34193	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.5	fisher_strand_p_value=0.432046	frequency=4.485e-01	ks_quality_p_value=0.243318	major_base=C	major_cov=55/36	major_frequency=5.515e-01	minor_base=A	minor_cov=40/34	new_cov=40/34	polymorphism_frequency=4.485e-01	polymorphism_score=210.4	prediction=polymorphism	ref_cov=55/36	total_cov=95/70
RA	755	.	Xen14_96	3435	0	A	G	bias_e_value=2924330	bias_p_value=0.589163	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.9	fisher_strand_p_value=0.244696	frequency=4.539e-01	ks_quality_p_value=1	major_base=A	major_cov=54/29	major_frequency=5.461e-01	minor_base=G	minor_cov=38/31	new_cov=38/31	polymorphism_frequency=4.539e-01	polymorphism_score=150.3	prediction=polymorphism	ref_cov=54/29	total_cov=92/60
RA	756	.	Xen14_96	3513	0	G	A	bias_e_value=380242	bias_p_value=0.0766071	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.2	fisher_strand_p_value=0.0477991	frequency=4.106e-01	ks_quality_p_value=0.306915	major_base=G	major_cov=55/34	major_frequency=5.894e-01	minor_base=A	minor_cov=28/34	new_cov=28/34	polymorphism_frequency=4.106e-01	polymorphism_score=133.6	prediction=polymorphism	ref_cov=55/34	total_cov=83/68
RA	757	.	Xen14_96	3721	0	T	C	bias_e_value=4925590	bias_p_value=0.992355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.1	fisher_strand_p_value=0.878925	frequency=3.716e-01	ks_quality_p_value=1	major_base=T	major_cov=54/61	major_frequency=6.284e-01	minor_base=C	minor_cov=33/35	new_cov=33/35	polymorphism_frequency=3.716e-01	polymorphism_score=142.3	prediction=polymorphism	ref_cov=54/61	total_cov=87/96
RA	758	.	Xen14_96	3739	0	A	G	bias_e_value=1891210	bias_p_value=0.38102	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.0	fisher_strand_p_value=1	frequency=3.681e-01	ks_quality_p_value=0.123126	major_base=A	major_cov=51/64	major_frequency=6.319e-01	minor_base=G	minor_cov=29/38	new_cov=29/38	polymorphism_frequency=3.681e-01	polymorphism_score=141.3	prediction=polymorphism	ref_cov=51/64	total_cov=80/102
RA	759	.	Xen14_96	3815	0	A	G	bias_e_value=536350	bias_p_value=0.108058	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.8	fisher_strand_p_value=0.343284	frequency=4.070e-01	ks_quality_p_value=0.0656875	major_base=A	major_cov=45/57	major_frequency=5.930e-01	minor_base=G	minor_cov=25/45	new_cov=25/45	polymorphism_frequency=4.070e-01	polymorphism_score=155.5	prediction=polymorphism	ref_cov=45/57	total_cov=70/104
RA	760	.	Xen14_96	3853	0	A	G	bias_e_value=1023220	bias_p_value=0.206148	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=0.0903219	frequency=3.916e-01	ks_quality_p_value=0.577251	major_base=A	major_cov=47/40	major_frequency=6.084e-01	minor_base=G	minor_cov=22/34	new_cov=22/34	polymorphism_frequency=3.916e-01	polymorphism_score=118.4	prediction=polymorphism	ref_cov=47/40	total_cov=69/75
RA	761	.	Xen14_96	3856	0	C	A	bias_e_value=1662080	bias_p_value=0.334858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.8	fisher_strand_p_value=0.168764	frequency=3.944e-01	ks_quality_p_value=0.604433	major_base=C	major_cov=45/41	major_frequency=6.056e-01	minor_base=A	minor_cov=22/34	new_cov=22/34	polymorphism_frequency=3.944e-01	polymorphism_score=152.8	prediction=polymorphism	ref_cov=45/41	total_cov=67/75
RA	762	.	Xen14_96	3859	0	G	C	bias_e_value=1431180	bias_p_value=0.28834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.0	fisher_strand_p_value=0.168764	frequency=3.944e-01	ks_quality_p_value=0.488862	major_base=G	major_cov=45/41	major_frequency=6.056e-01	minor_base=C	minor_cov=22/34	new_cov=22/34	polymorphism_frequency=3.944e-01	polymorphism_score=177.4	prediction=polymorphism	ref_cov=45/41	total_cov=67/75
RA	763	.	Xen14_96	3913	0	G	A	bias_e_value=2532070	bias_p_value=0.510133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.2	fisher_strand_p_value=1	frequency=3.663e-01	ks_quality_p_value=0.192779	major_base=G	major_cov=33/31	major_frequency=6.337e-01	minor_base=A	minor_cov=19/18	new_cov=19/18	polymorphism_frequency=3.663e-01	polymorphism_score=75.2	prediction=polymorphism	ref_cov=33/31	total_cov=52/49
RA	764	.	Xen14_96	3922	0	G	A	bias_e_value=3708320	bias_p_value=0.747112	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.8	fisher_strand_p_value=0.379412	frequency=3.298e-01	ks_quality_p_value=1	major_base=G	major_cov=27/36	major_frequency=6.702e-01	minor_base=A	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=3.298e-01	polymorphism_score=58.0	prediction=polymorphism	ref_cov=27/36	total_cov=44/50
RA	765	.	Xen14_96	4006	0	A	G	bias_e_value=2868530	bias_p_value=0.57792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.4	fisher_strand_p_value=0.2368	frequency=2.411e-01	ks_quality_p_value=1	major_base=A	major_cov=46/61	major_frequency=7.589e-01	minor_base=G	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.411e-01	polymorphism_score=61.3	prediction=polymorphism	ref_cov=46/61	total_cov=65/76
RA	766	.	Xen14_96	4007	0	T	C	bias_e_value=2868530	bias_p_value=0.57792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.7	fisher_strand_p_value=0.2368	frequency=2.411e-01	ks_quality_p_value=1	major_base=T	major_cov=46/61	major_frequency=7.589e-01	minor_base=C	minor_cov=19/15	new_cov=19/15	polymorphism_frequency=2.411e-01	polymorphism_score=60.7	prediction=polymorphism	ref_cov=46/61	total_cov=65/76
RA	767	.	Xen14_96	4041	0	T	C	bias_e_value=2737670	bias_p_value=0.551555	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.1	fisher_strand_p_value=0.218976	frequency=2.635e-01	ks_quality_p_value=1	major_base=T	major_cov=61/62	major_frequency=7.365e-01	minor_base=C	minor_cov=27/17	new_cov=27/17	polymorphism_frequency=2.635e-01	polymorphism_score=80.7	prediction=polymorphism	ref_cov=61/62	total_cov=88/79
RA	768	.	Xen14_96	4058	0	T	C	bias_e_value=3954080	bias_p_value=0.796625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.9	fisher_strand_p_value=0.858552	frequency=2.370e-01	ks_quality_p_value=0.506006	major_base=T	major_cov=71/61	major_frequency=7.630e-01	minor_base=C	minor_cov=23/18	new_cov=23/18	polymorphism_frequency=2.370e-01	polymorphism_score=74.0	prediction=polymorphism	ref_cov=71/61	total_cov=94/80
RA	769	.	Xen14_96	4060	0	T	C	bias_e_value=3942370	bias_p_value=0.794266	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.6	fisher_strand_p_value=1	frequency=2.457e-01	ks_quality_p_value=0.431614	major_base=T	major_cov=71/61	major_frequency=7.543e-01	minor_base=C	minor_cov=23/20	new_cov=23/20	polymorphism_frequency=2.457e-01	polymorphism_score=78.4	prediction=polymorphism	ref_cov=71/61	total_cov=94/81
RA	770	.	Xen14_96	4081	0	T	C	bias_e_value=2823630	bias_p_value=0.568874	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.230578	frequency=5.525e-01	ks_quality_p_value=1	major_base=C	major_cov=61/39	major_frequency=5.525e-01	minor_base=T	minor_cov=42/39	new_cov=61/39	polymorphism_frequency=5.525e-01	polymorphism_score=176.1	prediction=polymorphism	ref_cov=42/39	total_cov=103/78
RA	771	.	Xen14_96	4088	0	C	G	bias_e_value=1242510	bias_p_value=0.250328	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.6	fisher_strand_p_value=0.212627	frequency=2.124e-01	ks_quality_p_value=0.318982	major_base=C	major_cov=92/60	major_frequency=7.876e-01	minor_base=G	minor_cov=20/21	new_cov=20/21	polymorphism_frequency=2.124e-01	polymorphism_score=115.5	prediction=polymorphism	ref_cov=92/60	total_cov=112/81
RA	772	.	Xen14_96	4119	0	C	T	bias_e_value=868536	bias_p_value=0.174983	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.1	fisher_strand_p_value=0.0419494	frequency=2.570e-01	ks_quality_p_value=1	major_base=C	major_cov=95/64	major_frequency=7.430e-01	minor_base=T	minor_cov=24/31	new_cov=24/31	polymorphism_frequency=2.570e-01	polymorphism_score=100.4	prediction=polymorphism	ref_cov=95/64	total_cov=119/95
RA	773	.	Xen14_96	4157	0	G	A	bias_e_value=3105250	bias_p_value=0.625612	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.5	fisher_strand_p_value=0.271602	frequency=3.476e-01	ks_quality_p_value=1	major_base=G	major_cov=72/80	major_frequency=6.524e-01	minor_base=A	minor_cov=45/36	new_cov=45/36	polymorphism_frequency=3.476e-01	polymorphism_score=165.3	prediction=polymorphism	ref_cov=72/80	total_cov=117/116
RA	774	.	Xen14_96	4176	0	T	C	bias_e_value=814165	bias_p_value=0.164029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=402.1	fisher_strand_p_value=0.0385402	frequency=2.083e-01	ks_quality_p_value=1	major_base=T	major_cov=101/89	major_frequency=7.917e-01	minor_base=C	minor_cov=18/32	new_cov=18/32	polymorphism_frequency=2.083e-01	polymorphism_score=87.8	prediction=polymorphism	ref_cov=101/89	total_cov=119/121
RA	775	.	Xen14_96	4180	0	G	T	bias_e_value=3389550	bias_p_value=0.682889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.2	fisher_strand_p_value=0.348217	frequency=3.814e-01	ks_quality_p_value=0.914617	major_base=G	major_cov=69/77	major_frequency=6.186e-01	minor_base=T	minor_cov=49/41	new_cov=49/41	polymorphism_frequency=3.814e-01	polymorphism_score=247.4	prediction=polymorphism	ref_cov=69/77	total_cov=118/118
RA	776	.	Xen14_96	4185	0	G	A	bias_e_value=3203450	bias_p_value=0.645396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.4	fisher_strand_p_value=0.287113	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=72/78	major_frequency=6.250e-01	minor_base=A	minor_cov=50/40	new_cov=50/40	polymorphism_frequency=3.750e-01	polymorphism_score=189.0	prediction=polymorphism	ref_cov=72/78	total_cov=122/118
RA	777	.	Xen14_96	4370	0	G	A	bias_e_value=1943410	bias_p_value=0.391537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.0	fisher_strand_p_value=0.465922	frequency=6.010e-01	ks_quality_p_value=0.275146	major_base=A	major_cov=56/60	major_frequency=6.010e-01	minor_base=G	minor_cov=33/44	new_cov=56/60	polymorphism_frequency=6.010e-01	polymorphism_score=166.2	prediction=polymorphism	ref_cov=33/44	total_cov=89/104
RA	778	.	Xen14_96	4649	0	G	A	bias_e_value=2853390	bias_p_value=0.57487	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.3	fisher_strand_p_value=0.367645	frequency=5.130e-01	ks_quality_p_value=0.638359	major_base=A	major_cov=67/32	major_frequency=5.130e-01	minor_base=G	minor_cov=57/37	new_cov=67/32	polymorphism_frequency=5.130e-01	polymorphism_score=214.4	prediction=polymorphism	ref_cov=57/37	total_cov=124/69
RA	779	.	Xen14_96	4936	0	A	G	bias_e_value=4925490	bias_p_value=0.992334	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.4	fisher_strand_p_value=0.878758	frequency=5.060e-01	ks_quality_p_value=1	major_base=G	major_cov=42/43	major_frequency=5.060e-01	minor_base=A	minor_cov=40/43	new_cov=42/43	polymorphism_frequency=5.060e-01	polymorphism_score=187.1	prediction=polymorphism	ref_cov=40/43	total_cov=84/86
RA	780	.	Xen14_96	5239	0	G	A	bias_e_value=1244860	bias_p_value=0.2508	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.8	fisher_strand_p_value=0.210514	frequency=2.139e-01	ks_quality_p_value=0.323017	major_base=G	major_cov=63/84	major_frequency=7.861e-01	minor_base=A	minor_cov=22/18	new_cov=22/18	polymorphism_frequency=2.139e-01	polymorphism_score=70.5	prediction=polymorphism	ref_cov=63/84	total_cov=85/102
RA	781	.	Xen14_96	5260	0	G	A	bias_e_value=4826790	bias_p_value=0.972449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.1	fisher_strand_p_value=0.774636	frequency=3.318e-01	ks_quality_p_value=1	major_base=G	major_cov=70/77	major_frequency=6.682e-01	minor_base=A	minor_cov=37/36	new_cov=37/36	polymorphism_frequency=3.318e-01	polymorphism_score=146.4	prediction=polymorphism	ref_cov=70/77	total_cov=107/113
RA	782	.	Xen14_96	5290	0	A	G	bias_e_value=2562700	bias_p_value=0.516304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.7	fisher_strand_p_value=0.27168	frequency=2.913e-01	ks_quality_p_value=0.72346	major_base=A	major_cov=92/88	major_frequency=7.087e-01	minor_base=G	minor_cov=32/42	new_cov=32/42	polymorphism_frequency=2.913e-01	polymorphism_score=148.2	prediction=polymorphism	ref_cov=92/88	total_cov=124/130
RA	783	.	Xen14_96	5293	0	G	A	bias_e_value=3495080	bias_p_value=0.704151	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.1	fisher_strand_p_value=0.337557	frequency=2.835e-01	ks_quality_p_value=1	major_base=G	major_cov=94/93	major_frequency=7.165e-01	minor_base=A	minor_cov=32/42	new_cov=32/42	polymorphism_frequency=2.835e-01	polymorphism_score=144.2	prediction=polymorphism	ref_cov=94/93	total_cov=126/135
RA	784	.	Xen14_96	5633	0	A	G	bias_e_value=1827330	bias_p_value=0.368151	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=0.440373	frequency=4.505e-01	ks_quality_p_value=0.265808	major_base=A	major_cov=38/23	major_frequency=5.495e-01	minor_base=G	minor_cov=27/23	new_cov=27/23	polymorphism_frequency=4.505e-01	polymorphism_score=108.6	prediction=polymorphism	ref_cov=38/23	total_cov=66/46
RA	785	.	Xen14_96	5874	0	A	T	bias_e_value=4670960	bias_p_value=0.941054	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.1	fisher_strand_p_value=0.676915	frequency=3.465e-01	ks_quality_p_value=1	major_base=A	major_cov=34/32	major_frequency=6.535e-01	minor_base=T	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=3.465e-01	polymorphism_score=96.7	prediction=polymorphism	ref_cov=34/32	total_cov=50/51
RA	786	.	Xen14_96	5876	0	G	A	bias_e_value=4676880	bias_p_value=0.942247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.2	fisher_strand_p_value=0.679992	frequency=3.431e-01	ks_quality_p_value=1	major_base=G	major_cov=34/33	major_frequency=6.569e-01	minor_base=A	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=3.431e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=34/33	total_cov=50/52
RA	787	.	Xen14_96	5881	0	A	C	bias_e_value=1620010	bias_p_value=0.326382	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.2	fisher_strand_p_value=0.834503	frequency=3.465e-01	ks_quality_p_value=0.117822	major_base=A	major_cov=33/33	major_frequency=6.535e-01	minor_base=C	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=3.465e-01	polymorphism_score=101.0	prediction=polymorphism	ref_cov=33/33	total_cov=49/52
RA	788	.	Xen14_96	5896	0	T	A	bias_e_value=4906170	bias_p_value=0.988443	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.8	fisher_strand_p_value=0.85187	frequency=4.153e-01	ks_quality_p_value=1	major_base=T	major_cov=33/36	major_frequency=5.847e-01	minor_base=A	minor_cov=22/27	new_cov=22/27	polymorphism_frequency=4.153e-01	polymorphism_score=142.5	prediction=polymorphism	ref_cov=33/36	total_cov=55/64
RA	789	.	Xen14_96	6530	0	C	T	bias_e_value=2614640	bias_p_value=0.52677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.2	fisher_strand_p_value=0.486918	frequency=2.353e-01	ks_quality_p_value=0.417006	major_base=C	major_cov=40/38	major_frequency=7.647e-01	minor_base=T	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=2.353e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=40/38	total_cov=50/52
RA	790	.	Xen14_98	6171	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.1	fisher_strand_p_value=1	frequency=3.216e-01	ks_quality_p_value=1	major_base=C	major_cov=85/69	major_frequency=6.784e-01	minor_base=T	minor_cov=40/33	new_cov=40/33	polymorphism_frequency=3.216e-01	polymorphism_score=147.1	prediction=polymorphism	ref_cov=85/69	total_cov=125/102
RA	791	.	Xen14_98	6276	0	C	T	bias_e_value=1830530	bias_p_value=0.368796	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.9	fisher_strand_p_value=0.143028	frequency=4.455e-01	ks_quality_p_value=0.820511	major_base=C	major_cov=89/89	major_frequency=5.545e-01	minor_base=T	minor_cov=59/84	new_cov=59/84	polymorphism_frequency=4.455e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=89/89	total_cov=149/174
RA	792	.	Xen14_98	6285	0	C	T	bias_e_value=3107810	bias_p_value=0.626129	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=0.278349	frequency=4.431e-01	ks_quality_p_value=0.977183	major_base=C	major_cov=97/94	major_frequency=5.569e-01	minor_base=T	minor_cov=68/84	new_cov=68/84	polymorphism_frequency=4.431e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=97/94	total_cov=166/178
RA	793	.	Xen14_98	6322	0	T	C	bias_e_value=1418340	bias_p_value=0.285751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.3	fisher_strand_p_value=0.0814674	frequency=4.157e-01	ks_quality_p_value=1	major_base=T	major_cov=105/96	major_frequency=5.843e-01	minor_base=C	minor_cov=61/82	new_cov=61/82	polymorphism_frequency=4.157e-01	polymorphism_score=311.8	prediction=polymorphism	ref_cov=105/96	total_cov=166/178
RA	794	.	Xen14_98	6333	0	A	G	bias_e_value=3106990	bias_p_value=0.625963	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.3	fisher_strand_p_value=0.27187	frequency=4.184e-01	ks_quality_p_value=1	major_base=A	major_cov=101/95	major_frequency=5.816e-01	minor_base=G	minor_cov=64/77	new_cov=64/77	polymorphism_frequency=4.184e-01	polymorphism_score=307.8	prediction=polymorphism	ref_cov=101/95	total_cov=166/172
RA	795	.	Xen14_98	6351	0	G	A	bias_e_value=3567190	bias_p_value=0.718679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.4	fisher_strand_p_value=0.356589	frequency=4.393e-01	ks_quality_p_value=0.984846	major_base=G	major_cov=82/89	major_frequency=5.607e-01	minor_base=A	minor_cov=57/77	new_cov=57/77	polymorphism_frequency=4.393e-01	polymorphism_score=297.2	prediction=polymorphism	ref_cov=82/89	total_cov=139/166
RA	796	.	Xen14_98	6374	0	G	A	bias_e_value=4203170	bias_p_value=0.84681	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.8	fisher_strand_p_value=0.500342	frequency=4.455e-01	ks_quality_p_value=0.999998	major_base=G	major_cov=90/88	major_frequency=5.545e-01	minor_base=A	minor_cov=66/77	new_cov=66/77	polymorphism_frequency=4.455e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=90/88	total_cov=157/165
RA	797	.	Xen14_98	6471	0	C	T	bias_e_value=4764180	bias_p_value=0.959835	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=0.730305	frequency=4.785e-01	ks_quality_p_value=1	major_base=C	major_cov=85/73	major_frequency=5.215e-01	minor_base=T	minor_cov=81/64	new_cov=81/64	polymorphism_frequency=4.785e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=85/73	total_cov=166/137
RA	798	.	Xen14_98	6517	0	A	G	bias_e_value=4203470	bias_p_value=0.846869	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.8	fisher_strand_p_value=0.500427	frequency=4.619e-01	ks_quality_p_value=1	major_base=A	major_cov=64/56	major_frequency=5.381e-01	minor_base=G	minor_cov=60/43	new_cov=60/43	polymorphism_frequency=4.619e-01	polymorphism_score=225.6	prediction=polymorphism	ref_cov=64/56	total_cov=124/99
MC	799	.	Xen14_126	1	177	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=89	right_outside_cov=92
MC	800	.	Xen14_183	1	43	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=49	right_outside_cov=111
MC	801	.	Xen14_189	448	453	0	0	left_inside_cov=11	left_outside_cov=91	right_inside_cov=0	right_outside_cov=NA
MC	802	.	Xen14_197	403	433	0	0	left_inside_cov=32	left_outside_cov=183	right_inside_cov=0	right_outside_cov=NA
MC	803	.	Xen14_34	53053	53084	0	0	left_inside_cov=33	left_outside_cov=119	right_inside_cov=0	right_outside_cov=NA
MC	804	.	Xen14_46	40318	40351	0	0	left_inside_cov=62	left_outside_cov=63	right_inside_cov=0	right_outside_cov=NA
MC	805	.	Xen14_49	1	55	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=50	right_outside_cov=153
MC	806	.	Xen14_58	24541	24572	0	0	left_inside_cov=39	left_outside_cov=349	right_inside_cov=0	right_outside_cov=NA
MC	807	.	Xen14_60	1	31	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=19	right_outside_cov=57
MC	808	.	Xen14_62	1	43	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=16	right_outside_cov=47
MC	809	.	Xen14_67	1	27	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=15	right_outside_cov=59
MC	810	.	Xen14_7	136431	136514	0	0	left_inside_cov=31	left_outside_cov=33	right_inside_cov=0	right_outside_cov=NA
MC	811	.	Xen14_73	13054	13160	0	0	left_inside_cov=68	left_outside_cov=70	right_inside_cov=0	right_outside_cov=NA
MC	812	.	Xen14_76	1	32	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=31	right_outside_cov=221
MC	813	.	Xen14_79	12305	12553	0	0	left_inside_cov=92	left_outside_cov=95	right_inside_cov=0	right_outside_cov=NA
MC	814	.	Xen14_85	11156	11197	0	0	left_inside_cov=29	left_outside_cov=93	right_inside_cov=0	right_outside_cov=NA
JC	815	.	Xen14_1	1	1	Xen14_148	943	1	-25	alignment_overlap=-25	coverage_minus=15	coverage_plus=21	flanking_left=150	flanking_right=47	frequency=1	junction_possible_overlap_registers=123	key=Xen14_1__1__1__Xen14_148__943__1__-25__CAAAATGAATCAATCTTTACTTTCT__150__47__0__1	max_left=123	max_left_minus=117	max_left_plus=123	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=38	max_min_right_minus=38	max_min_right_plus=37	max_pos_hash_score=246	max_right=38	max_right_minus=38	max_right_plus=37	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.56	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36	unique_read_sequence=CAAAATGAATCAATCTTTACTTTCT
JC	816	.	Xen14_1	36522	1	Xen14_1	36552	1	0	alignment_overlap=10	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=5.287e-02	junction_possible_overlap_registers=138	key=Xen14_1__36522__1__Xen14_1__36542__1__10____150__150__0__0	max_left=51	max_left_minus=51	max_left_plus=0	max_min_left=51	max_min_left_minus=51	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=107	max_right_minus=107	max_right_plus=0	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.287e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=4
JC	817	.	Xen14_1	121778	1	Xen14_168	1	1	-48	alignment_overlap=-48	coverage_minus=13	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=6.846e-01	junction_possible_overlap_registers=100	key=Xen14_1__121778__1__Xen14_168__1__1__-48__TAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGG__150__150__0__0	max_left=65	max_left_minus=65	max_left_plus=64	max_min_left=49	max_min_left_minus=49	max_min_left_plus=39	max_min_right=50	max_min_right_minus=50	max_min_right_plus=41	max_pos_hash_score=200	max_right=92	max_right_minus=92	max_right_plus=84	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.04	new_junction_read_count=22	polymorphism_frequency=6.846e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.33	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=TAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGG
JC	818	.	Xen14_1	241843	-1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=84	frequency=1.257e-01	junction_possible_overlap_registers=148	key=Xen14_1__241843__-1__Xen14_47__36191__1__0____150__84__0__0	max_left=68	max_left_minus=66	max_left_plus=68	max_min_left=68	max_min_left_minus=66	max_min_left_plus=68	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=82	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.10	new_junction_read_count=12	polymorphism_frequency=1.257e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=7
JC	819	.	Xen14_1	242479	-1	Xen14_186	394	1	0	alignment_overlap=5	coverage_minus=126	coverage_plus=137	flanking_left=150	flanking_right=72	frequency=1.969e-01	junction_possible_overlap_registers=143	key=Xen14_1__242479__-1__Xen14_186__389__1__5____150__72__0__1	max_left=143	max_left_minus=142	max_left_plus=143	max_min_left=71	max_min_left_minus=71	max_min_left_plus=48	max_min_right=72	max_min_right_minus=71	max_min_right_plus=72	max_pos_hash_score=286	max_right=72	max_right_minus=72	max_right_plus=72	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.40	new_junction_read_count=303	polymorphism_frequency=1.969e-01	pos_hash_score=102	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=14.25	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=1279	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=263
JC	820	.	Xen14_1	242480	1	Xen14_105	4697	1	0	alignment_overlap=0	coverage_minus=126	coverage_plus=223	flanking_left=77	flanking_right=150	frequency=7.466e-01	junction_possible_overlap_registers=148	key=Xen14_1__242480__1__Xen14_105__4697__1__0____77__150__1__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=149	max_right_minus=149	max_right_plus=149	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.93	new_junction_read_count=389	polymorphism_frequency=7.466e-01	pos_hash_score=119	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=349
JC	821	.	Xen14_10	471	-1	Xen14_23	73961	-1	0	alignment_overlap=14	coverage_minus=183	coverage_plus=172	flanking_left=150	flanking_right=150	frequency=6.072e-01	junction_possible_overlap_registers=134	key=Xen14_10__471__-1__Xen14_23__73975__-1__14____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=135	max_min_left=67	max_min_left_minus=67	max_min_left_plus=67	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=268	max_right=135	max_right_minus=133	max_right_plus=135	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.69	new_junction_read_count=366	polymorphism_frequency=6.072e-01	pos_hash_score=159	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.97	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=523	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=355
JC	822	.	Xen14_10	42215	1	Xen14_10	42242	1	0	alignment_overlap=12	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=3.260e-02	junction_possible_overlap_registers=136	key=Xen14_10__42215__1__Xen14_10__42230__1__12____150__150__0__0	max_left=49	max_left_minus=49	max_left_plus=0	max_min_left=49	max_min_left_minus=49	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=272	max_right=127	max_right_minus=127	max_right_plus=0	neg_log10_pos_hash_p_value=21.1	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=3.260e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=12	side_1_possible_overlap_registers=148	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=147	side_2_redundant=0	total_non_overlap_reads=5
JC	823	.	Xen14_10	47356	-1	Xen14_10	47374	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=2.776e-02	junction_possible_overlap_registers=140	key=Xen14_10__47356__-1__Xen14_10__47382__-1__8____150__150__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=54	max_min_right_minus=0	max_min_right_plus=54	max_pos_hash_score=280	max_right=54	max_right_minus=0	max_right_plus=54	neg_log10_pos_hash_p_value=21.4	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.776e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=3
JC	824	.	Xen14_10	73731	1	Xen14_10	73750	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=4.702e-02	junction_possible_overlap_registers=139	key=Xen14_10__73731__1__Xen14_10__73741__1__9____150__150__0__0	max_left=102	max_left_minus=47	max_left_plus=102	max_min_left=47	max_min_left_minus=47	max_min_left_plus=0	max_min_right=39	max_min_right_minus=0	max_min_right_plus=39	max_pos_hash_score=278	max_right=135	max_right_minus=135	max_right_plus=39	neg_log10_pos_hash_p_value=19.6	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.702e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=6
JC	825	.	Xen14_10	107217	-1	Xen14_123	2714	-1	-16	alignment_overlap=-16	coverage_minus=33	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=132	key=Xen14_10__107217__-1__Xen14_123__2714__-1__-16__TGAGTTCGGCATGGGA__150__150__0__0	max_left=132	max_left_minus=132	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=56	max_pos_hash_score=264	max_right=56	max_right_minus=56	max_right_plus=56	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.12	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=TGAGTTCGGCATGGGA
JC	826	.	Xen14_10	107217	-1	Xen14_123	2714	-1	-16	alignment_overlap=-16	coverage_minus=90	coverage_plus=54	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=132	key=Xen14_10__107217__-1__Xen14_123__2714__-1__-16__TGAGTTCGGCATGGGG__150__150__0__0	max_left=132	max_left_minus=132	max_left_plus=124	max_min_left=56	max_min_left_minus=56	max_min_left_plus=56	max_min_right=67	max_min_right_minus=67	max_min_right_plus=66	max_pos_hash_score=264	max_right=133	max_right_minus=133	max_right_plus=130	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.26	new_junction_read_count=146	polymorphism_frequency=1.000e+00	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=144	unique_read_sequence=TGAGTTCGGCATGGGG
JC	827	.	Xen14_101	2439	1	Xen14_101	2463	1	0	alignment_overlap=6	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=5.451e-03	junction_possible_overlap_registers=142	key=Xen14_101__2439__1__Xen14_101__2457__1__6____150__150__0__0	max_left=36	max_left_minus=36	max_left_plus=24	max_min_left=36	max_min_left_minus=36	max_min_left_plus=24	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=116	max_right_minus=116	max_right_plus=82	neg_log10_pos_hash_p_value=28.4	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=5.451e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=748	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=742	side_2_redundant=0	total_non_overlap_reads=4
JC	828	.	Xen14_101	3241	1	Xen14_101	3265	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=4.594e-03	junction_possible_overlap_registers=144	key=Xen14_101__3241__1__Xen14_101__3261__1__4____150__150__0__0	max_left=83	max_left_minus=24	max_left_plus=83	max_min_left=24	max_min_left_minus=24	max_min_left_plus=14	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=288	max_right=132	max_right_minus=122	max_right_plus=132	neg_log10_pos_hash_p_value=29.4	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=4.594e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=666	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=652	side_2_redundant=0	total_non_overlap_reads=3
JC	829	.	Xen14_101	3620	1	Xen14_101	3643	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=4.351e-03	junction_possible_overlap_registers=146	key=Xen14_101__3620__1__Xen14_101__3641__1__2____150__150__0__0	max_left=50	max_left_minus=50	max_left_plus=37	max_min_left=50	max_min_left_minus=50	max_min_left_plus=37	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=108	max_right_minus=100	max_right_plus=108	neg_log10_pos_hash_p_value=29.5	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=4.351e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=678	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=704	side_2_redundant=0	total_non_overlap_reads=3
JC	830	.	Xen14_102	5552	-1	Xen14_141	1	1	-8	alignment_overlap=-8	coverage_minus=8	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_102__5552__-1__Xen14_141__1__1__-8__AGGAGAGC__150__150__0__0	max_left=141	max_left_minus=128	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=61	max_pos_hash_score=280	max_right=65	max_right_minus=65	max_right_plus=61	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.05	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32	unique_read_sequence=AGGAGAGC
JC	831	.	Xen14_105	91	-1	Xen14_168	629	-1	-1	alignment_overlap=-1	coverage_minus=11	coverage_plus=3	flanking_left=91	flanking_right=150	frequency=2.326e-01	junction_possible_overlap_registers=147	key=Xen14_105__91__-1__Xen14_168__629__-1__-1__G__91__150__0__0	max_left=8	max_left_minus=8	max_left_plus=8	max_min_left=8	max_min_left_minus=8	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=146	neg_log10_pos_hash_p_value=16.8	new_junction_coverage=0.02	new_junction_read_count=14	polymorphism_frequency=2.326e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=G
JC	832	.	Xen14_105	3419	1	Xen14_37	180	1	-3	alignment_overlap=-3	coverage_minus=11	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=2.668e-01	junction_possible_overlap_registers=145	key=Xen14_105__3419__1__Xen14_37__180__1__-3__GCT__150__150__0__0	max_left=142	max_left_minus=136	max_left_plus=142	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=53	max_min_right_plus=57	max_pos_hash_score=290	max_right=57	max_right_minus=53	max_right_plus=57	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.27	new_junction_read_count=36	polymorphism_frequency=2.668e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=23	unique_read_sequence=GCT
JC	833	.	Xen14_105	3420	1	Xen14_49	56	1	0	alignment_overlap=55	coverage_minus=27	coverage_plus=63	flanking_left=150	flanking_right=150	frequency=6.861e-01	junction_possible_overlap_registers=93	key=Xen14_105__3420__1__Xen14_49__1__1__55____150__150__0__0	max_left=94	max_left_minus=94	max_left_plus=93	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=41	max_min_right_minus=33	max_min_right_plus=41	max_pos_hash_score=186	max_right=94	max_right_minus=90	max_right_plus=94	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.96	new_junction_read_count=103	polymorphism_frequency=6.861e-01	pos_hash_score=54	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=55	side_1_possible_overlap_registers=148	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=93	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	834	.	Xen14_105	3625	-1	Xen14_115	3560	1	-70	alignment_overlap=-70	coverage_minus=41	coverage_plus=48	flanking_left=150	flanking_right=74	frequency=3.163e-01	junction_possible_overlap_registers=78	key=Xen14_105__3625__-1__Xen14_115__3560__1__-70__GTTCTCCATTACCGCATTATCAAGGCAGTTGCCCTTGCGCGACATGCTCTGCACTAACCCTCTGTCCGCC__150__74__0__0	max_left=79	max_left_minus=78	max_left_plus=79	max_min_left=39	max_min_left_minus=39	max_min_left_plus=39	max_min_right=40	max_min_right_minus=40	max_min_right_plus=39	max_pos_hash_score=156	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.19	new_junction_read_count=94	polymorphism_frequency=3.163e-01	pos_hash_score=54	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=4.04	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=710	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.49	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=89	unique_read_sequence=GTTCTCCATTACCGCATTATCAAGGCAGTTGCCCTTGCGCGACATGCTCTGCACTAACCCTCTGTCCGCC
JC	835	.	Xen14_105	3688	1	Xen14_12	188	-1	-1	alignment_overlap=-1	coverage_minus=21	coverage_plus=46	flanking_left=150	flanking_right=150	frequency=2.851e-01	junction_possible_overlap_registers=147	key=Xen14_105__3688__1__Xen14_12__188__-1__-1__G__150__150__0__0	max_left=49	max_left_minus=41	max_left_plus=49	max_min_left=49	max_min_left_minus=41	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=149	max_right_minus=149	max_right_plus=148	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.79	new_junction_read_count=104	polymorphism_frequency=2.851e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.45	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=430	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=G
JC	836	.	Xen14_105	3695	-1	Xen14_16	81842	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=1	flanking_left=150	flanking_right=100	frequency=6.786e-02	junction_possible_overlap_registers=148	key=Xen14_105__3695__-1__Xen14_16__81842__1__0____150__100__0__0	max_left=95	max_left_minus=95	max_left_plus=50	max_min_left=54	max_min_left_minus=54	max_min_left_plus=50	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_pos_hash_score=296	max_right=100	max_right_minus=100	max_right_plus=100	neg_log10_pos_hash_p_value=13.4	new_junction_coverage=0.12	new_junction_read_count=17	polymorphism_frequency=6.786e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.24	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=393	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=8
JC	837	.	Xen14_105	4985	1	Xen14_191	128	1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=24	flanking_left=77	flanking_right=150	frequency=5.921e-01	junction_possible_overlap_registers=148	key=Xen14_105__4985__1__Xen14_191__128__1__0____77__150__1__0	max_left=77	max_left_minus=75	max_left_plus=77	max_min_left=74	max_min_left_minus=70	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=66	max_pos_hash_score=296	max_right=147	max_right_minus=147	max_right_plus=146	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.30	new_junction_read_count=90	polymorphism_frequency=5.921e-01	pos_hash_score=42	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=58
JC	838	.	Xen14_105	4988	-1	Xen14_152	859	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=42	flanking_left=150	flanking_right=76	frequency=1.535e-01	junction_possible_overlap_registers=148	key=Xen14_105__4988__-1__Xen14_152__859__1__0____150__76__0__1	max_left=149	max_left_minus=145	max_left_plus=149	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=74	max_min_right_minus=68	max_min_right_plus=74	max_pos_hash_score=296	max_right=76	max_right_minus=76	max_right_plus=74	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.44	new_junction_read_count=66	polymorphism_frequency=1.535e-01	pos_hash_score=42	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.07	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=364	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=59
JC	839	.	Xen14_106	85	-1	Xen14_27	333	-1	0	alignment_overlap=10	coverage_minus=9	coverage_plus=4	flanking_left=75	flanking_right=150	frequency=5.955e-02	junction_possible_overlap_registers=138	key=Xen14_106__85__-1__Xen14_27__343__-1__10____75__150__0__0	max_left=47	max_left_minus=47	max_left_plus=28	max_min_left=47	max_min_left_minus=47	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=133	max_right_minus=122	max_right_plus=133	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.11	new_junction_read_count=13	polymorphism_frequency=5.955e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.64	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=322	side_2_redundant=0	total_non_overlap_reads=13
JC	840	.	Xen14_106	87	-1	Xen14_159	728	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=3	flanking_left=86	flanking_right=150	frequency=1.116e-01	junction_possible_overlap_registers=147	key=Xen14_106__87__-1__Xen14_159__729__-1__1____86__150__0__0	max_left=66	max_left_minus=66	max_left_plus=63	max_min_left=66	max_min_left_minus=66	max_min_left_plus=63	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=103	max_right_minus=101	max_right_plus=103	neg_log10_pos_hash_p_value=11.9	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=1.116e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=8
JC	841	.	Xen14_106	1597	1	Xen14_191	130	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=2.858e-01	junction_possible_overlap_registers=146	key=Xen14_106__1597__1__Xen14_191__128__1__2____150__150__0__0	max_left=33	max_left_minus=30	max_left_plus=33	max_min_left=33	max_min_left_minus=30	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=145	max_right_minus=145	max_right_plus=145	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.15	new_junction_read_count=42	polymorphism_frequency=2.858e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=151	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=18
JC	842	.	Xen14_106	1601	-1	Xen14_167	666	-1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=4.966e-01	junction_possible_overlap_registers=148	key=Xen14_106__1601__-1__Xen14_167__666__-1__0____150__150__0__0	max_left=60	max_left_minus=60	max_left_plus=60	max_min_left=60	max_min_left_minus=60	max_min_left_plus=60	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=147	max_right_plus=149	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.14	new_junction_read_count=74	polymorphism_frequency=4.966e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=55
JC	843	.	Xen14_106	4570	1	Xen14_47	36192	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=11	flanking_left=150	flanking_right=83	frequency=2.237e-01	junction_possible_overlap_registers=146	key=Xen14_106__4570__1__Xen14_47__36190__1__2____150__83__0__0	max_left=71	max_left_minus=67	max_left_plus=71	max_min_left=71	max_min_left_minus=67	max_min_left_plus=71	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=83	max_right_minus=83	max_right_plus=83	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.25	new_junction_read_count=34	polymorphism_frequency=2.237e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=22
JC	844	.	Xen14_107	4859	1	Xen14_159	722	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=7	flanking_left=74	flanking_right=77	frequency=2.321e-01	junction_possible_overlap_registers=148	key=Xen14_107__4859__1__Xen14_159__722__1__0____74__77__1__0	max_left=74	max_left_minus=72	max_left_plus=74	max_min_left=74	max_min_left_minus=72	max_min_left_plus=74	max_min_right=74	max_min_right_minus=0	max_min_right_plus=74	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=2.321e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=9
JC	845	.	Xen14_107	4859	1	Xen14_85	2720	1	-2	alignment_overlap=-2	coverage_minus=35	coverage_plus=41	flanking_left=74	flanking_right=150	frequency=3.793e-01	junction_possible_overlap_registers=146	key=Xen14_107__4859__1__Xen14_85__2720__1__-2__CC__74__150__1__0	max_left=74	max_left_minus=74	max_left_plus=74	max_min_left=73	max_min_left_minus=69	max_min_left_plus=73	max_min_right=74	max_min_right_minus=74	max_min_right_plus=73	max_pos_hash_score=292	max_right=147	max_right_minus=147	max_right_plus=142	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.74	new_junction_read_count=85	polymorphism_frequency=3.793e-01	pos_hash_score=48	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=141	side_2_redundant=0	total_non_overlap_reads=76	unique_read_sequence=CC
JC	846	.	Xen14_108	128	1	Xen14_27	108	1	0	alignment_overlap=17	coverage_minus=90	coverage_plus=92	flanking_left=150	flanking_right=150	frequency=2.886e-01	junction_possible_overlap_registers=131	key=Xen14_108__128__1__Xen14_27__91__1__17____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=101	max_min_left=66	max_min_left_minus=65	max_min_left_plus=66	max_min_right=64	max_min_right_minus=64	max_min_right_plus=64	max_pos_hash_score=262	max_right=128	max_right_minus=128	max_right_plus=124	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.90	new_junction_read_count=219	polymorphism_frequency=2.886e-01	pos_hash_score=98	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=8.45	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=978	side_2_redundant=0	total_non_overlap_reads=182
JC	847	.	Xen14_108	2632	1	Xen14_144	1085	-1	0	alignment_overlap=6	coverage_minus=16	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=4.955e-01	junction_possible_overlap_registers=142	key=Xen14_108__2632__1__Xen14_144__1091__-1__6____150__150__0__0	max_left=54	max_left_minus=51	max_left_plus=54	max_min_left=54	max_min_left_minus=51	max_min_left_plus=54	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=143	max_right_minus=142	max_right_plus=143	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.13	new_junction_read_count=49	polymorphism_frequency=4.955e-01	pos_hash_score=27	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	848	.	Xen14_108	2845	1	Xen14_108	2885	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=2.333e-02	junction_possible_overlap_registers=147	key=Xen14_108__2845__1__Xen14_108__2884__1__1____150__150__0__0	max_left=83	max_left_minus=83	max_left_plus=66	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=294	max_right=92	max_right_minus=66	max_right_plus=92	neg_log10_pos_hash_p_value=16.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.333e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=129	side_2_redundant=0	total_non_overlap_reads=3
JC	849	.	Xen14_109	82	1	Xen14_12	188	-1	-39	alignment_overlap=-39	coverage_minus=9	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.728e-01	junction_possible_overlap_registers=109	key=Xen14_109__82__1__Xen14_12__188__-1__-39__TCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG__150__150__0__0	max_left=32	max_left_minus=32	max_left_plus=22	max_min_left=32	max_min_left_minus=32	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=109	max_right_minus=109	max_right_plus=92	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.17	new_junction_read_count=11	polymorphism_frequency=1.728e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=TCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG
JC	850	.	Xen14_109	121	1	Xen14_12	188	-1	-78	alignment_overlap=-78	coverage_minus=6	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=2.477e-01	junction_possible_overlap_registers=70	key=Xen14_109__121__1__Xen14_12__188__-1__-78__TCCCAGACCGAACTGATTGTTGGTCAGTGCGCCTGACAGTCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG__150__150__0__0	max_left=14	max_left_minus=14	max_left_plus=7	max_min_left=14	max_min_left_minus=14	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=140	max_right=70	max_right_minus=67	max_right_plus=70	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.30	new_junction_read_count=13	polymorphism_frequency=2.477e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=95	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TCCCAGACCGAACTGATTGTTGGTCAGTGCGCCTGACAGTCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG
JC	851	.	Xen14_11	64	-1	Xen14_138	37	1	-76	alignment_overlap=-76	coverage_minus=12	coverage_plus=23	flanking_left=64	flanking_right=150	frequency=6.134e-01	junction_possible_overlap_registers=72	key=Xen14_11__64__-1__Xen14_138__37__1__-76__GTGTCAGATGGGCGTCTAAGTTACCAATTCTTGTCTAATGGCTACATACGGCGGTCGGTTTACGCTTACTCTAATT__64__150__0__0	max_left=64	max_left_minus=64	max_left_plus=64	max_min_left=36	max_min_left_minus=36	max_min_left_plus=0	max_min_right=36	max_min_right_minus=33	max_min_right_plus=36	max_pos_hash_score=144	max_right=39	max_right_minus=39	max_right_plus=36	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.70	new_junction_read_count=44	polymorphism_frequency=6.134e-01	pos_hash_score=23	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=GTGTCAGATGGGCGTCTAAGTTACCAATTCTTGTCTAATGGCTACATACGGCGGTCGGTTTACGCTTACTCTAATT
JC	852	.	Xen14_11	104533	-1	Xen14_11	104549	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=3.294e-02	junction_possible_overlap_registers=142	key=Xen14_11__104533__-1__Xen14_11__104555__-1__6____150__150__0__0	max_left=130	max_left_minus=0	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=0	max_min_right_plus=65	max_pos_hash_score=284	max_right=65	max_right_minus=0	max_right_plus=65	neg_log10_pos_hash_p_value=16.7	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=3.294e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=3
JC	853	.	Xen14_110	1	1	Xen14_168	26	1	0	alignment_overlap=25	coverage_minus=20	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_110__1__1__Xen14_168__1__1__25____150__150__0__0	max_left=123	max_left_minus=119	max_left_plus=123	max_min_left=62	max_min_left_minus=62	max_min_left_plus=58	max_min_right=62	max_min_right_minus=62	max_min_right_plus=59	max_pos_hash_score=246	max_right=69	max_right_minus=68	max_right_plus=69	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.05	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	854	.	Xen14_111	1741	1	Xen14_111	1785	1	0	alignment_overlap=7	coverage_minus=7	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.381e-02	junction_possible_overlap_registers=141	key=Xen14_111__1741__1__Xen14_111__1778__1__7____150__150__0__0	max_left=55	max_left_minus=55	max_left_plus=36	max_min_left=55	max_min_left_minus=55	max_min_left_plus=36	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=120	max_right_minus=120	max_right_plus=107	neg_log10_pos_hash_p_value=24.5	new_junction_coverage=0.01	new_junction_read_count=8	polymorphism_frequency=1.381e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=599	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=572	side_2_redundant=0	total_non_overlap_reads=8
JC	855	.	Xen14_111	1747	-1	Xen14_111	1777	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=7.010e-03	junction_possible_overlap_registers=141	key=Xen14_111__1747__-1__Xen14_111__1784__-1__7____150__150__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=53	max_min_right_minus=0	max_min_right_plus=53	max_pos_hash_score=282	max_right=53	max_right_minus=0	max_right_plus=53	neg_log10_pos_hash_p_value=27.3	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.010e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=588	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=573	side_2_redundant=0	total_non_overlap_reads=4
JC	856	.	Xen14_113	1	1	Xen14_187	464	-1	-22	alignment_overlap=-22	coverage_minus=84	coverage_plus=82	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=126	key=Xen14_113__1__1__Xen14_187__464__-1__-22__CACCCCAACCCGTCACTACGCA__150__150__0__0	max_left=127	max_left_minus=127	max_left_plus=127	max_min_left=63	max_min_left_minus=63	max_min_left_plus=57	max_min_right=63	max_min_right_minus=63	max_min_right_plus=62	max_pos_hash_score=252	max_right=125	max_right_minus=125	max_right_plus=125	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.87	new_junction_read_count=166	polymorphism_frequency=1.000e+00	pos_hash_score=96	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=166	unique_read_sequence=CACCCCAACCCGTCACTACGCA
JC	857	.	Xen14_113	1	1	Xen14_187	464	-1	-22	alignment_overlap=-22	coverage_minus=37	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=126	key=Xen14_113__1__1__Xen14_187__464__-1__-22__CACCCCGACCCGTCACTACGCG__150__150__0__0	max_left=50	max_left_minus=50	max_left_plus=49	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=252	max_right=127	max_right_minus=126	max_right_plus=127	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.34	new_junction_read_count=64	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=64	unique_read_sequence=CACCCCGACCCGTCACTACGCG
JC	858	.	Xen14_113	4275	-1	Xen14_3	166191	1	0	alignment_overlap=38	coverage_minus=35	coverage_plus=42	flanking_left=150	flanking_right=121	frequency=5.993e-01	junction_possible_overlap_registers=110	key=Xen14_113__4275__-1__Xen14_3__166153__1__38____150__121__0__0	max_left=111	max_left_minus=108	max_left_plus=111	max_min_left=53	max_min_left_minus=53	max_min_left_plus=53	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=220	max_right=88	max_right_minus=88	max_right_plus=81	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.68	new_junction_read_count=83	polymorphism_frequency=5.993e-01	pos_hash_score=52	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=77
JC	859	.	Xen14_115	77	-1	Xen14_43	39557	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=19	flanking_left=77	flanking_right=150	frequency=3.913e-01	junction_possible_overlap_registers=148	key=Xen14_115__77__-1__Xen14_43__39557__-1__0____77__150__1__0	max_left=77	max_left_minus=76	max_left_plus=77	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=73	max_pos_hash_score=296	max_right=132	max_right_minus=132	max_right_plus=131	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.58	new_junction_read_count=72	polymorphism_frequency=3.913e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=61
JC	860	.	Xen14_115	77	-1	Xen14_96	3984	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=3	flanking_left=77	flanking_right=150	frequency=1.440e-01	junction_possible_overlap_registers=148	key=Xen14_115__77__-1__Xen14_96__3984__-1__0____77__150__1__0	max_left=37	max_left_minus=37	max_left_plus=28	max_min_left=37	max_min_left_minus=37	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=147	max_right_minus=145	max_right_plus=147	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.14	new_junction_read_count=18	polymorphism_frequency=1.440e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=13
JC	861	.	Xen14_115	78	-1	Xen14_168	1	1	-35	alignment_overlap=-35	coverage_minus=40	coverage_plus=29	flanking_left=78	flanking_right=150	frequency=1	junction_possible_overlap_registers=113	key=Xen14_115__78__-1__Xen14_168__1__1__-35__GCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGA__78__150__1__0	max_left=78	max_left_minus=76	max_left_plus=78	max_min_left=55	max_min_left_minus=55	max_min_left_plus=52	max_min_right=51	max_min_right_minus=51	max_min_right_plus=50	max_pos_hash_score=226	max_right=110	max_right_minus=110	max_right_plus=102	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.12	new_junction_read_count=75	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69	unique_read_sequence=GCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGA
JC	862	.	Xen14_117	77	-1	Xen14_7	136257	1	0	alignment_overlap=2	coverage_minus=16	coverage_plus=22	flanking_left=75	flanking_right=150	frequency=3.678e-01	junction_possible_overlap_registers=146	key=Xen14_117__77__-1__Xen14_7__136255__1__2____75__150__0__0	max_left=72	max_left_minus=72	max_left_plus=70	max_min_left=72	max_min_left_minus=72	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=145	max_right_minus=145	max_right_plus=131	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.56	new_junction_read_count=38	polymorphism_frequency=3.678e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.51	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=38
JC	863	.	Xen14_117	3012	-1	Xen14_148	85	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=2.307e-01	junction_possible_overlap_registers=147	key=Xen14_117__3012__-1__Xen14_148__85__1__-1__G__150__150__0__0	max_left=118	max_left_minus=117	max_left_plus=118	max_min_left=72	max_min_left_minus=64	max_min_left_plus=72	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=294	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.21	new_junction_read_count=14	polymorphism_frequency=2.307e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=G
JC	864	.	Xen14_117	3012	-1	Xen14_25	73181	1	0	alignment_overlap=17	coverage_minus=12	coverage_plus=7	flanking_left=150	flanking_right=60	frequency=2.997e-01	junction_possible_overlap_registers=131	key=Xen14_117__3012__-1__Xen14_25__73164__1__17____150__60__0__1	max_left=101	max_left_minus=100	max_left_plus=101	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=43	max_pos_hash_score=262	max_right=57	max_right_minus=57	max_right_plus=43	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.42	new_junction_read_count=25	polymorphism_frequency=2.997e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	865	.	Xen14_117	3027	-1	Xen14_194	327	-1	-20	alignment_overlap=-20	coverage_minus=3	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.131e-01	junction_possible_overlap_registers=128	key=Xen14_117__3027__-1__Xen14_194__327__-1__-20__CCGGAGCCGGACTCCGGTTT__150__150__0__0	max_left=77	max_left_minus=76	max_left_plus=77	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=62	max_pos_hash_score=256	max_right=63	max_right_minus=63	max_right_plus=62	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.13	new_junction_read_count=7	polymorphism_frequency=1.131e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=CCGGAGCCGGACTCCGGTTT
JC	866	.	Xen14_118	1	1	Xen14_184	442	-1	0	alignment_overlap=31	coverage_minus=19	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_118__1__1__Xen14_184__473__-1__31____150__150__0__0	max_left=110	max_left_minus=110	max_left_plus=96	max_min_left=58	max_min_left_minus=53	max_min_left_plus=58	max_min_right=59	max_min_right_minus=59	max_min_right_plus=55	max_pos_hash_score=234	max_right=71	max_right_minus=66	max_right_plus=71	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.07	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	867	.	Xen14_118	3283	1	Xen14_43	39549	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=25	flanking_left=73	flanking_right=150	frequency=2.848e-01	junction_possible_overlap_registers=148	key=Xen14_118__3283__1__Xen14_43__39549__1__0____73__150__1__0	max_left=73	max_left_minus=61	max_left_plus=73	max_min_left=73	max_min_left_minus=61	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=148	max_right_minus=145	max_right_plus=148	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.44	new_junction_read_count=43	polymorphism_frequency=2.848e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=38
JC	868	.	Xen14_118	3283	1	Xen14_96	5676	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=73	flanking_right=150	frequency=1.493e-01	junction_possible_overlap_registers=148	key=Xen14_118__3283__1__Xen14_96__5676__-1__0____73__150__1__0	max_left=22	max_left_minus=15	max_left_plus=22	max_min_left=22	max_min_left_minus=15	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=136	max_right_minus=136	max_right_plus=132	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=1.493e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=6
JC	869	.	Xen14_118	3284	1	Xen14_96	3975	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=7	flanking_left=72	flanking_right=150	frequency=1.517e-01	junction_possible_overlap_registers=147	key=Xen14_118__3283__1__Xen14_96__3975__1__1____72__150__1__0	max_left=72	max_left_minus=71	max_left_plus=72	max_min_left=72	max_min_left_minus=71	max_min_left_plus=72	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=294	max_right=135	max_right_minus=135	max_right_plus=126	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.19	new_junction_read_count=19	polymorphism_frequency=1.517e-01	pos_hash_score=16	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=17
JC	870	.	Xen14_118	3306	1	Xen14_20	75235	1	0	alignment_overlap=11	coverage_minus=41	coverage_plus=8	flanking_left=50	flanking_right=150	frequency=4.689e-02	junction_possible_overlap_registers=137	key=Xen14_118__3295__1__Xen14_20__75235__1__11____50__150__1__0	max_left=40	max_left_minus=40	max_left_plus=22	max_min_left=40	max_min_left_minus=40	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=134	max_right_minus=134	max_right_plus=133	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.60	new_junction_read_count=49	polymorphism_frequency=4.689e-02	pos_hash_score=22	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=10.30	side_2_overlap=11	side_2_possible_overlap_registers=148	side_2_read_count=1076	side_2_redundant=0	total_non_overlap_reads=49
JC	871	.	Xen14_119	73	-1	Xen14_134	121	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=9	flanking_left=73	flanking_right=120	frequency=1.986e-01	junction_possible_overlap_registers=147	key=Xen14_119__74__-1__Xen14_134__121__-1__1____73__120__1__0	max_left=73	max_left_minus=68	max_left_plus=73	max_min_left=73	max_min_left_minus=68	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=120	max_right_minus=120	max_right_plus=120	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.16	new_junction_read_count=16	polymorphism_frequency=1.986e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=16
JC	872	.	Xen14_119	73	-1	Xen14_168	629	-1	-15	alignment_overlap=-15	coverage_minus=20	coverage_plus=11	flanking_left=73	flanking_right=150	frequency=1	junction_possible_overlap_registers=133	key=Xen14_119__73__-1__Xen14_168__629__-1__-15__AGCTAGGCTGGGGGG__73__150__1__0	max_left=69	max_left_minus=64	max_left_plus=69	max_min_left=67	max_min_left_minus=64	max_min_left_plus=67	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=266	max_right=134	max_right_minus=134	max_right_plus=129	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.04	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31	unique_read_sequence=AGCTAGGCTGGGGGG
JC	873	.	Xen14_119	73	-1	Xen14_25	77	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=73	flanking_right=77	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_119__73__-1__Xen14_25__77__-1__0____73__77__1__1	max_left=73	max_left_minus=71	max_left_plus=73	max_min_left=73	max_min_left_minus=71	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.18	new_junction_read_count=15	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	874	.	Xen14_119	3208	-1	Xen14_168	26	1	0	alignment_overlap=25	coverage_minus=22	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_119__3208__-1__Xen14_168__1__1__25____150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=117	max_min_left=59	max_min_left_minus=56	max_min_left_plus=59	max_min_right=59	max_min_right_minus=59	max_min_right_plus=59	max_pos_hash_score=246	max_right=74	max_right_minus=73	max_right_plus=74	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.08	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54
JC	875	.	Xen14_12	25	1	Xen14_166	677	-1	0	alignment_overlap=8	coverage_minus=27	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=9.424e-02	junction_possible_overlap_registers=140	key=Xen14_12__25__1__Xen14_166__685__-1__8____150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=138	max_min_left=68	max_min_left_minus=67	max_min_left_plus=68	max_min_right=71	max_min_right_minus=71	max_min_right_plus=69	max_pos_hash_score=280	max_right=126	max_right_minus=126	max_right_plus=125	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.04	new_junction_read_count=53	polymorphism_frequency=9.424e-02	pos_hash_score=44	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=12.02	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=1077	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	876	.	Xen14_12	188	-1	Xen14_29	60	1	0	alignment_overlap=59	coverage_minus=15	coverage_plus=26	flanking_left=129	flanking_right=150	frequency=6.662e-01	junction_possible_overlap_registers=89	key=Xen14_12__188__-1__Xen14_29__1__1__59____129__150__0__0	max_left=88	max_left_minus=88	max_left_plus=81	max_min_left=41	max_min_left_minus=41	max_min_left_plus=40	max_min_right=44	max_min_right_minus=44	max_min_right_plus=44	max_pos_hash_score=178	max_right=88	max_right_minus=85	max_right_plus=88	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.23	new_junction_read_count=57	polymorphism_frequency=6.662e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=59	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=89	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	877	.	Xen14_12	188	-1	Xen14_68	16331	1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=18	flanking_left=150	flanking_right=52	frequency=3.624e-01	junction_possible_overlap_registers=148	key=Xen14_12__188__-1__Xen14_68__16331__1__0____150__52__0__1	max_left=148	max_left_minus=148	max_left_plus=147	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=52	max_min_right_plus=44	max_pos_hash_score=296	max_right=52	max_right_minus=52	max_right_plus=44	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.41	new_junction_read_count=54	polymorphism_frequency=3.624e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=44
JC	878	.	Xen14_12	189	-1	Xen14_21	59	-1	0	alignment_overlap=1	coverage_minus=22	coverage_plus=23	flanking_left=150	flanking_right=59	frequency=4.107e-01	junction_possible_overlap_registers=147	key=Xen14_12__189__-1__Xen14_21__60__-1__1____150__59__0__1	max_left=147	max_left_minus=147	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=57	max_pos_hash_score=294	max_right=59	max_right_minus=59	max_right_plus=57	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.73	new_junction_read_count=54	polymorphism_frequency=4.107e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=45
JC	879	.	Xen14_12	100697	1	Xen14_33	77	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=7	flanking_left=150	flanking_right=77	frequency=2.468e-01	junction_possible_overlap_registers=148	key=Xen14_12__100697__1__Xen14_33__77__-1__0____150__77__0__0	max_left=125	max_left_minus=123	max_left_plus=125	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=66	max_pos_hash_score=296	max_right=70	max_right_minus=70	max_right_plus=66	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.21	new_junction_read_count=19	polymorphism_frequency=2.468e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=18
JC	880	.	Xen14_121	1	1	Xen14_184	443	-1	0	alignment_overlap=30	coverage_minus=30	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=118	key=Xen14_121__1__1__Xen14_184__473__-1__30____150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=56	max_min_left_minus=56	max_min_left_plus=54	max_min_right=57	max_min_right_minus=57	max_min_right_plus=57	max_pos_hash_score=236	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.14	new_junction_read_count=62	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=30	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=118	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=61
JC	881	.	Xen14_123	1	1	Xen14_205	404	-1	-34	alignment_overlap=-34	coverage_minus=107	coverage_plus=81	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=114	key=Xen14_123__1__1__Xen14_205__404__-1__-34__ACGCCTTTCCAGACGCTTCCACTAACACACACAC__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=115	max_min_left=57	max_min_left_minus=57	max_min_left_plus=55	max_min_right=57	max_min_right_minus=53	max_min_right_plus=57	max_pos_hash_score=228	max_right=115	max_right_minus=114	max_right_plus=115	neg_log10_pos_hash_p_value=18.5	new_junction_coverage=0.26	new_junction_read_count=191	polymorphism_frequency=1.000e+00	pos_hash_score=106	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=188	unique_read_sequence=ACGCCTTTCCAGACGCTTCCACTAACACACACAC
JC	882	.	Xen14_123	1	1	Xen14_205	404	-1	-34	alignment_overlap=-34	coverage_minus=317	coverage_plus=262	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=114	key=Xen14_123__1__1__Xen14_205__404__-1__-34__GCGCCTTTCCAGACGCTTCCACTAACACACACAT__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=115	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=58	max_min_right_minus=58	max_min_right_plus=58	max_pos_hash_score=228	max_right=115	max_right_minus=114	max_right_plus=115	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.79	new_junction_read_count=580	polymorphism_frequency=1.000e+00	pos_hash_score=182	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=579	unique_read_sequence=GCGCCTTTCCAGACGCTTCCACTAACACACACAT
JC	883	.	Xen14_123	2649	-1	Xen14_3	166278	-1	-27	alignment_overlap=-27	coverage_minus=101	coverage_plus=101	flanking_left=150	flanking_right=150	frequency=5.683e-01	junction_possible_overlap_registers=121	key=Xen14_123__2649__-1__Xen14_3__166278__-1__-27__GACAGGTCATAACGTGACGTGTTGATA__150__150__0__0	max_left=121	max_left_minus=120	max_left_plus=121	max_min_left=60	max_min_left_minus=60	max_min_left_plus=59	max_min_right=60	max_min_right_minus=60	max_min_right_plus=59	max_pos_hash_score=242	max_right=122	max_right_minus=122	max_right_plus=117	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.41	new_junction_read_count=205	polymorphism_frequency=5.683e-01	pos_hash_score=109	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.30	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=324	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=202	unique_read_sequence=GACAGGTCATAACGTGACGTGTTGATA
JC	884	.	Xen14_123	2714	-1	Xen14_17	1	1	-19	alignment_overlap=-19	coverage_minus=32	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=129	key=Xen14_123__2714__-1__Xen14_17__1__1__-19__TCCCATGCCGAACTCAGAA__150__150__0__0	max_left=56	max_left_minus=56	max_left_plus=56	max_min_left=56	max_min_left_minus=56	max_min_left_plus=56	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=258	max_right=129	max_right_minus=129	max_right_plus=124	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.11	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57	unique_read_sequence=TCCCATGCCGAACTCAGAA
JC	885	.	Xen14_123	2714	-1	Xen14_4	1	1	-5	alignment_overlap=-5	coverage_minus=5	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=143	key=Xen14_123__2714__-1__Xen14_4__1__1__-5__CCCCA__150__150__0__0	max_left=44	max_left_minus=37	max_left_plus=44	max_min_left=44	max_min_left_minus=37	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=116	max_right_minus=116	max_right_plus=116	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15	unique_read_sequence=CCCCA
JC	886	.	Xen14_123	2714	-1	Xen14_4	1	1	-5	alignment_overlap=-5	coverage_minus=118	coverage_plus=148	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=143	key=Xen14_123__2714__-1__Xen14_4__1__1__-5__TCCCA__150__150__0__0	max_left=143	max_left_minus=143	max_left_plus=143	max_min_left=72	max_min_left_minus=72	max_min_left_plus=72	max_min_right=72	max_min_right_minus=72	max_min_right_plus=71	max_pos_hash_score=286	max_right=141	max_right_minus=136	max_right_plus=141	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.49	new_junction_read_count=275	polymorphism_frequency=1.000e+00	pos_hash_score=124	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=266	unique_read_sequence=TCCCA
JC	887	.	Xen14_123	2714	-1	Xen14_9	1	1	-15	alignment_overlap=-15	coverage_minus=13	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=133	key=Xen14_123__2714__-1__Xen14_9__1__1__-15__CCCCATGCCGAACTC__150__150__0__0	max_left=54	max_left_minus=51	max_left_plus=54	max_min_left=54	max_min_left_minus=51	max_min_left_plus=54	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=266	max_right=131	max_right_minus=131	max_right_plus=131	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.05	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30	unique_read_sequence=CCCCATGCCGAACTC
JC	888	.	Xen14_124	1	1	Xen14_165	691	-1	-1	alignment_overlap=-1	coverage_minus=40	coverage_plus=47	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_124__1__1__Xen14_165__691__-1__-1__A__150__150__0__0	max_left=148	max_left_minus=145	max_left_plus=148	max_min_left=73	max_min_left_minus=72	max_min_left_plus=73	max_min_right=73	max_min_right_minus=71	max_min_right_plus=73	max_pos_hash_score=294	max_right=148	max_right_minus=145	max_right_plus=148	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.66	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=87	unique_read_sequence=A
JC	889	.	Xen14_124	1	1	Xen14_165	691	-1	-1	alignment_overlap=-1	coverage_minus=51	coverage_plus=33	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_124__1__1__Xen14_165__691__-1__-1__G__150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=142	max_min_left=74	max_min_left_minus=74	max_min_left_plus=67	max_min_right=74	max_min_right_minus=74	max_min_right_plus=72	max_pos_hash_score=294	max_right=148	max_right_minus=139	max_right_plus=148	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.62	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=84	unique_read_sequence=G
JC	890	.	Xen14_124	2576	-1	Xen14_21	74761	1	-28	alignment_overlap=-28	coverage_minus=28	coverage_plus=16	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=120	key=Xen14_124__2576__-1__Xen14_21__74761__1__-28__CCTTCGGTTTTCATCAGTCCTGATAACA__150__77__0__1	max_left=118	max_left_minus=118	max_left_plus=117	max_min_left=60	max_min_left_minus=50	max_min_left_plus=60	max_min_right=57	max_min_right_minus=57	max_min_right_plus=52	max_pos_hash_score=240	max_right=77	max_right_minus=77	max_right_plus=71	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.62	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=44	unique_read_sequence=CCTTCGGTTTTCATCAGTCCTGATAACA
JC	891	.	Xen14_125	2302	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.770e-01	junction_possible_overlap_registers=144	key=Xen14_125__2302__-1__Xen14_165__1__1__4____150__150__0__0	max_left=128	max_left_minus=128	max_left_plus=98	max_min_left=7	max_min_left_minus=6	max_min_left_plus=7	max_min_right=48	max_min_right_minus=18	max_min_right_plus=48	max_pos_hash_score=288	max_right=144	max_right_minus=140	max_right_plus=144	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.07	new_junction_read_count=9	polymorphism_frequency=1.770e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	892	.	Xen14_125	2356	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.365e-01	junction_possible_overlap_registers=144	key=Xen14_125__2356__-1__Xen14_165__1__1__4____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=7	max_min_left=7	max_min_left_minus=6	max_min_left_plus=7	max_min_right=11	max_min_right_minus=11	max_min_right_plus=0	max_pos_hash_score=288	max_right=144	max_right_minus=140	max_right_plus=144	neg_log10_pos_hash_p_value=12.0	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=1.365e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	893	.	Xen14_125	2374	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.574e-01	junction_possible_overlap_registers=144	key=Xen14_125__2374__-1__Xen14_165__1__1__4____150__150__0__0	max_left=144	max_left_minus=66	max_left_plus=144	max_min_left=66	max_min_left_minus=66	max_min_left_plus=7	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_pos_hash_score=288	max_right=144	max_right_minus=140	max_right_plus=144	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.08	new_junction_read_count=10	polymorphism_frequency=1.574e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	894	.	Xen14_125	2392	-1	Xen14_165	5	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.242e-01	junction_possible_overlap_registers=144	key=Xen14_125__2392__-1__Xen14_165__1__1__4____150__150__0__0	max_left=35	max_left_minus=35	max_left_plus=7	max_min_left=35	max_min_left_minus=35	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=144	max_right_minus=140	max_right_plus=144	neg_log10_pos_hash_p_value=12.0	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=1.242e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	895	.	Xen14_125	2423	-1	Xen14_165	18	1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.493e-01	junction_possible_overlap_registers=131	key=Xen14_125__2423__-1__Xen14_165__1__1__17____150__150__0__0	max_left=35	max_left_minus=35	max_left_plus=7	max_min_left=35	max_min_left_minus=35	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=262	max_right=131	max_right_minus=127	max_right_plus=131	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=1.493e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	896	.	Xen14_125	2458	-1	Xen14_165	35	1	0	alignment_overlap=34	coverage_minus=7	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=3.253e-01	junction_possible_overlap_registers=114	key=Xen14_125__2458__-1__Xen14_165__1__1__34____150__150__0__0	max_left=90	max_left_minus=90	max_left_plus=33	max_min_left=33	max_min_left_minus=16	max_min_left_plus=33	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=228	max_right=110	max_right_minus=110	max_right_plus=96	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.13	new_junction_read_count=13	polymorphism_frequency=3.253e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=34	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=114	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=11
JC	897	.	Xen14_125	2476	-1	Xen14_165	1	1	-2	alignment_overlap=-2	coverage_minus=9	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=4.761e-01	junction_possible_overlap_registers=146	key=Xen14_125__2476__-1__Xen14_165__1__1__-2__CG__150__150__0__0	max_left=43	max_left_minus=37	max_left_plus=43	max_min_left=43	max_min_left_minus=37	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=144	max_right_minus=144	max_right_plus=130	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.20	new_junction_read_count=26	polymorphism_frequency=4.761e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.49	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21	unique_read_sequence=CG
JC	898	.	Xen14_125	2476	-1	Xen14_165	17	1	0	alignment_overlap=16	coverage_minus=6	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=5.013e-01	junction_possible_overlap_registers=132	key=Xen14_125__2476__-1__Xen14_165__1__1__16____150__150__0__0	max_left=45	max_left_minus=36	max_left_plus=45	max_min_left=45	max_min_left_minus=36	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=264	max_right=132	max_right_minus=128	max_right_plus=132	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.22	new_junction_read_count=26	polymorphism_frequency=5.013e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.49	side_1_overlap=16	side_1_possible_overlap_registers=148	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=132	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20
JC	899	.	Xen14_126	56	1	Xen14_79	12483	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=6.994e-01	junction_possible_overlap_registers=145	key=Xen14_126__56__1__Xen14_79__12486__-1__3____150__150__0__0	max_left=137	max_left_minus=137	max_left_plus=112	max_min_left=43	max_min_left_minus=0	max_min_left_plus=43	max_min_right=69	max_min_right_minus=2	max_min_right_plus=69	max_pos_hash_score=290	max_right=106	max_right_minus=2	max_right_plus=106	neg_log10_pos_hash_p_value=18.3	new_junction_coverage=0.04	new_junction_read_count=8	polymorphism_frequency=6.994e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=7
JC	900	.	Xen14_126	1701	1	Xen14_60	21844	1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=9.231e-02	junction_possible_overlap_registers=147	key=Xen14_126__1701__1__Xen14_60__21844__1__-1__C__150__150__0__0	max_left=122	max_left_minus=122	max_left_plus=121	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=31	max_min_right_minus=31	max_min_right_plus=30	max_pos_hash_score=294	max_right=31	max_right_minus=31	max_right_plus=30	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.06	new_junction_read_count=10	polymorphism_frequency=9.231e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=146	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=C
JC	901	.	Xen14_126	1701	1	Xen14_85	2720	1	-1	alignment_overlap=-1	coverage_minus=10	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=1.337e-01	junction_possible_overlap_registers=147	key=Xen14_126__1701__1__Xen14_85__2720__1__-1__C__150__150__0__0	max_left=122	max_left_minus=122	max_left_plus=121	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=37	max_pos_hash_score=294	max_right=48	max_right_minus=48	max_right_plus=37	neg_log10_pos_hash_p_value=15.8	new_junction_coverage=0.10	new_junction_read_count=22	polymorphism_frequency=1.337e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=146	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=141	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=C
JC	902	.	Xen14_126	1702	1	Xen14_130	31	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=1.864e-01	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_130__31__1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=11	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=11	max_right_plus=13	neg_log10_pos_hash_p_value=15.2	new_junction_coverage=0.11	new_junction_read_count=22	polymorphism_frequency=1.864e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=149	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.33	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=18
JC	903	.	Xen14_126	1702	1	Xen14_138	30	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=1.897e-01	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_138__30__1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=11	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=11	max_right_plus=13	neg_log10_pos_hash_p_value=13.1	new_junction_coverage=0.11	new_junction_read_count=22	polymorphism_frequency=1.897e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=149	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.30	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=18
JC	904	.	Xen14_126	1702	1	Xen14_159	722	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=77	frequency=2.614e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_159__722__1__0____150__77__0__1	max_left=118	max_left_minus=0	max_left_plus=118	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=0	max_min_right_plus=52	max_pos_hash_score=296	max_right=52	max_right_minus=0	max_right_plus=52	neg_log10_pos_hash_p_value=18.1	new_junction_coverage=0.02	new_junction_read_count=4	polymorphism_frequency=2.614e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=149	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	905	.	Xen14_126	1702	1	Xen14_71	14273	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=1.888e-01	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_71__14273__-1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=11	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=11	max_right_plus=13	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.11	new_junction_read_count=22	polymorphism_frequency=1.888e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=149	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=18
JC	906	.	Xen14_126	1702	1	Xen14_75	13021	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=1.864e-01	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_75__13021__-1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=11	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=11	max_right_plus=13	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.11	new_junction_read_count=22	polymorphism_frequency=1.864e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=149	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=18
JC	907	.	Xen14_126	1780	1	Xen14_86	10876	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=78	frequency=6.466e-03	junction_possible_overlap_registers=141	key=Xen14_126__1780__1__Xen14_86__10869__1__7____150__78__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=0	max_min_right_plus=65	max_pos_hash_score=282	max_right=65	max_right_minus=0	max_right_plus=65	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=6.466e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=3.09	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=869	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=3
JC	908	.	Xen14_126	2082	-1	Xen14_206	403	-1	-47	alignment_overlap=-47	coverage_minus=266	coverage_plus=323	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=101	key=Xen14_126__2082__-1__Xen14_206__403__-1__-47__TTCCACTCAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCC__150__150__0__0	max_left=102	max_left_minus=102	max_left_plus=102	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=51	max_min_right_minus=51	max_min_right_plus=51	max_pos_hash_score=202	max_right=102	max_right_minus=102	max_right_plus=102	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.67	new_junction_read_count=814	polymorphism_frequency=9.198e-01	pos_hash_score=127	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=208	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=589	unique_read_sequence=TTCCACTCAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCC
JC	909	.	Xen14_126	2200	-1	Xen14_180	75	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=75	frequency=8.125e-02	junction_possible_overlap_registers=148	key=Xen14_126__2200__-1__Xen14_180__75__-1__0____150__75__0__1	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=43	max_min_right_plus=44	max_pos_hash_score=296	max_right=44	max_right_minus=43	max_right_plus=44	neg_log10_pos_hash_p_value=21.2	new_junction_coverage=0.06	new_junction_read_count=13	polymorphism_frequency=8.125e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	910	.	Xen14_126	2200	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=8.966e-02	junction_possible_overlap_registers=148	key=Xen14_126__2200__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=43	max_min_right_plus=44	max_pos_hash_score=296	max_right=44	max_right_minus=43	max_right_plus=44	neg_log10_pos_hash_p_value=11.6	new_junction_coverage=0.06	new_junction_read_count=13	polymorphism_frequency=8.966e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=8
JC	911	.	Xen14_126	2440	1	Xen14_99	6045	-1	-65	alignment_overlap=-65	coverage_minus=10	coverage_plus=16	flanking_left=76	flanking_right=150	frequency=1	junction_possible_overlap_registers=83	key=Xen14_126__2440__1__Xen14_99__6045__-1__-65__TCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCAGAT__76__150__1__0	max_left=76	max_left_minus=57	max_left_plus=76	max_min_left=38	max_min_left_minus=33	max_min_left_plus=38	max_min_right=42	max_min_right_minus=42	max_min_right_plus=28	max_pos_hash_score=166	max_right=80	max_right_minus=79	max_right_plus=80	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.26	new_junction_read_count=26	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=26	unique_read_sequence=TCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCAGAT
JC	912	.	Xen14_127	36	1	Xen14_127	93	1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.448e-02	junction_possible_overlap_registers=141	key=Xen14_127__36__1__Xen14_127__86__1__7____150__150__0__0	max_left=46	max_left_minus=46	max_left_plus=39	max_min_left=46	max_min_left_minus=46	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=117	max_right_minus=107	max_right_plus=117	neg_log10_pos_hash_p_value=27.7	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=1.448e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=276	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=554	side_2_redundant=0	total_non_overlap_reads=6
JC	913	.	Xen14_127	212	1	Xen14_127	413	1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.316e-03	junction_possible_overlap_registers=131	key=Xen14_127__212__1__Xen14_127__396__1__17____150__150__0__0	max_left=114	max_left_minus=114	max_left_plus=68	max_min_left=36	max_min_left_minus=36	max_min_left_plus=0	max_min_right=65	max_min_right_minus=19	max_min_right_plus=65	max_pos_hash_score=262	max_right=97	max_right_minus=97	max_right_plus=65	neg_log10_pos_hash_p_value=29.3	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=7.316e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=727	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=442	side_2_redundant=0	total_non_overlap_reads=4
JC	914	.	Xen14_129	72	-1	Xen14_2	77	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=72	flanking_right=77	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_129__72__-1__Xen14_2__77__-1__0____72__77__1__1	max_left=72	max_left_minus=0	max_left_plus=72	max_min_left=72	max_min_left_minus=0	max_min_left_plus=72	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=296	max_right=75	max_right_minus=0	max_right_plus=75	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	915	.	Xen14_13	98318	-1	Xen14_168	590	-1	0	alignment_overlap=39	coverage_minus=31	coverage_plus=38	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=109	key=Xen14_13__98318__-1__Xen14_168__629__-1__39____150__150__0__0	max_left=109	max_left_minus=109	max_left_plus=105	max_min_left=53	max_min_left_minus=51	max_min_left_plus=53	max_min_right=55	max_min_right_minus=55	max_min_right_plus=54	max_pos_hash_score=218	max_right=72	max_right_minus=72	max_right_plus=66	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.12	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=109	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	916	.	Xen14_131	846	1	Xen14_151	1	1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=39	flanking_left=150	flanking_right=150	frequency=7.589e-01	junction_possible_overlap_registers=148	key=Xen14_131__846__1__Xen14_151__1__1__0____150__150__0__0	max_left=147	max_left_minus=146	max_left_plus=147	max_min_left=38	max_min_left_minus=38	max_min_left_plus=21	max_min_right=72	max_min_right_minus=72	max_min_right_plus=67	max_pos_hash_score=296	max_right=146	max_right_minus=138	max_right_plus=146	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.67	new_junction_read_count=85	polymorphism_frequency=7.589e-01	pos_hash_score=44	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	917	.	Xen14_132	1586	1	Xen14_175	119	-1	-3	alignment_overlap=-3	coverage_minus=10	coverage_plus=7	flanking_left=150	flanking_right=119	frequency=1.144e-01	junction_possible_overlap_registers=145	key=Xen14_132__1586__1__Xen14_175__119__-1__-3__TGA__150__119__0__0	max_left=143	max_left_minus=143	max_left_plus=142	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=26	max_min_right_minus=24	max_min_right_plus=26	max_pos_hash_score=290	max_right=26	max_right_minus=24	max_right_plus=26	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.13	new_junction_read_count=20	polymorphism_frequency=1.144e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=154	side_2_redundant=0	total_non_overlap_reads=17	unique_read_sequence=TGA
JC	918	.	Xen14_132	1586	1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=84	frequency=6.667e-02	junction_possible_overlap_registers=148	key=Xen14_132__1586__1__Xen14_47__36191__1__0____150__84__0__0	max_left=149	max_left_minus=148	max_left_plus=149	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=2	max_min_right_minus=2	max_min_right_plus=2	max_pos_hash_score=296	max_right=80	max_right_minus=80	max_right_plus=80	neg_log10_pos_hash_p_value=17.6	new_junction_coverage=0.05	new_junction_read_count=9	polymorphism_frequency=6.667e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=5
JC	919	.	Xen14_132	1586	1	Xen14_90	74	-1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=25	flanking_left=150	flanking_right=74	frequency=2.832e-01	junction_possible_overlap_registers=148	key=Xen14_132__1586__1__Xen14_90__74__-1__0____150__74__0__1	max_left=149	max_left_minus=148	max_left_plus=149	max_min_left=73	max_min_left_minus=73	max_min_left_plus=48	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=296	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.40	new_junction_read_count=64	polymorphism_frequency=2.832e-01	pos_hash_score=41	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=60
JC	920	.	Xen14_133	718	1	Xen14_133	759	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.358e-02	junction_possible_overlap_registers=147	key=Xen14_133__718__1__Xen14_133__758__1__1____150__150__0__0	max_left=63	max_left_minus=63	max_left_plus=0	max_min_left=63	max_min_left_minus=63	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=105	max_right_minus=105	max_right_plus=0	neg_log10_pos_hash_p_value=42.2	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=1.358e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=296	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=287	side_2_redundant=0	total_non_overlap_reads=4
JC	921	.	Xen14_134	121	-1	Xen14_16	81842	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=4	flanking_left=120	flanking_right=100	frequency=1.476e-01	junction_possible_overlap_registers=147	key=Xen14_134__121__-1__Xen14_16__81841__1__1____120__100__0__0	max_left=71	max_left_minus=71	max_left_plus=63	max_min_left=71	max_min_left_minus=71	max_min_left_plus=63	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=100	max_right_minus=100	max_right_plus=100	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.11	new_junction_read_count=12	polymorphism_frequency=1.476e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=9
JC	922	.	Xen14_134	124	1	Xen14_80	11959	1	-6	alignment_overlap=-6	coverage_minus=5	coverage_plus=6	flanking_left=150	flanking_right=77	frequency=2.779e-01	junction_possible_overlap_registers=142	key=Xen14_134__124__1__Xen14_80__11959__1__-6__CCCTGT__150__77__0__1	max_left=97	max_left_minus=95	max_left_plus=97	max_min_left=71	max_min_left_minus=71	max_min_left_plus=67	max_min_right=63	max_min_right_minus=63	max_min_right_plus=60	max_pos_hash_score=284	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.21	new_junction_read_count=24	polymorphism_frequency=2.779e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11	unique_read_sequence=CCCTGT
JC	923	.	Xen14_134	212	1	Xen14_134	213	-1	-13	alignment_overlap=-13	coverage_minus=23	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=4.105e-01	junction_possible_overlap_registers=135	key=Xen14_134__212__1__Xen14_134__213__-1__-13__GTATCAGTTAGCG__150__150__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=66	max_min_left_minus=62	max_min_left_plus=66	max_min_right=66	max_min_right_minus=55	max_min_right_plus=66	max_pos_hash_score=270	max_right=100	max_right_minus=100	max_right_plus=98	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.59	new_junction_read_count=54	polymorphism_frequency=4.105e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=GTATCAGTTAGCG
JC	924	.	Xen14_134	693	1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=84	frequency=1.304e-01	junction_possible_overlap_registers=148	key=Xen14_134__693__1__Xen14_47__36191__1__0____150__84__0__0	max_left=68	max_left_minus=68	max_left_plus=0	max_min_left=68	max_min_left_minus=68	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=0	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.09	new_junction_read_count=12	polymorphism_frequency=1.304e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=3
JC	925	.	Xen14_134	693	1	Xen14_90	74	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=21	flanking_left=150	flanking_right=74	frequency=3.519e-01	junction_possible_overlap_registers=148	key=Xen14_134__693__1__Xen14_90__74__-1__0____150__74__0__1	max_left=146	max_left_minus=145	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=296	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.34	new_junction_read_count=38	polymorphism_frequency=3.519e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=34
JC	926	.	Xen14_134	695	-1	Xen14_162	691	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=26	flanking_left=150	flanking_right=75	frequency=4.188e-01	junction_possible_overlap_registers=148	key=Xen14_134__695__-1__Xen14_162__691__1__0____150__75__0__1	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=68	max_min_left_minus=68	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=69	max_pos_hash_score=296	max_right=74	max_right_minus=74	max_right_plus=69	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.41	new_junction_read_count=49	polymorphism_frequency=4.188e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=41
JC	927	.	Xen14_134	1002	1	Xen14_96	5905	-1	-50	alignment_overlap=-50	coverage_minus=17	coverage_plus=26	flanking_left=150	flanking_right=150	frequency=5.105e-01	junction_possible_overlap_registers=98	key=Xen14_134__1002__1__Xen14_96__5905__-1__-50__TATCAGGAAGAGCAGACGACACGATAACAGGGTTGTTGGTGCGGGGGGCT__150__150__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=49	max_min_left_minus=43	max_min_left_plus=49	max_min_right=49	max_min_right_minus=24	max_min_right_plus=49	max_pos_hash_score=196	max_right=99	max_right_minus=99	max_right_plus=89	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.64	new_junction_read_count=48	polymorphism_frequency=5.105e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=43	unique_read_sequence=TATCAGGAAGAGCAGACGACACGATAACAGGGTTGTTGGTGCGGGGGGCT
JC	928	.	Xen14_136	1	1	Xen14_170	580	-1	0	alignment_overlap=39	coverage_minus=40	coverage_plus=43	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=109	key=Xen14_136__1__1__Xen14_170__619__-1__39____150__150__0__0	max_left=110	max_left_minus=107	max_left_plus=110	max_min_left=39	max_min_left_minus=38	max_min_left_plus=39	max_min_right=38	max_min_right_minus=38	max_min_right_plus=38	max_pos_hash_score=218	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=109	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=83
JC	929	.	Xen14_136	77	-1	Xen14_158	76	-1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=7	flanking_left=76	flanking_right=76	frequency=NA	junction_possible_overlap_registers=147	key=Xen14_136__77__-1__Xen14_158__77__-1__1____76__76__1__1	max_left=76	max_left_minus=76	max_left_plus=76	max_min_left=67	max_min_left_minus=67	max_min_left_plus=0	max_min_right=74	max_min_right_minus=73	max_min_right_plus=74	max_pos_hash_score=294	max_right=76	max_right_minus=76	max_right_plus=74	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.21	new_junction_read_count=28	polymorphism_frequency=NA	pos_hash_score=7	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	930	.	Xen14_136	1566	-1	Xen14_141	1	1	-1	alignment_overlap=-1	coverage_minus=362	coverage_plus=275	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_136__1566__-1__Xen14_141__1__1__-1__C__150__150__0__0	max_left=144	max_left_minus=140	max_left_plus=144	max_min_left=71	max_min_left_minus=70	max_min_left_plus=71	max_min_right=72	max_min_right_minus=72	max_min_right_plus=71	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.63	new_junction_read_count=649	polymorphism_frequency=9.992e-01	pos_hash_score=157	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=637	unique_read_sequence=C
JC	931	.	Xen14_138	75	-1	Xen14_45	40401	-1	-62	alignment_overlap=-62	coverage_minus=38	coverage_plus=35	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen14_138__75__-1__Xen14_45__40401__-1__-62__GAAAGGGGGGATTTCCGGTCGCAGTGTAAAAGGAAAACGTATCCATACCCGGGCCATTCACA__75__150__1__0	max_left=75	max_left_minus=71	max_left_plus=75	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=44	max_min_right_minus=43	max_min_right_plus=44	max_pos_hash_score=172	max_right=87	max_right_minus=82	max_right_plus=87	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.90	new_junction_read_count=78	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73	unique_read_sequence=GAAAGGGGGGATTTCCGGTCGCAGTGTAAAAGGAAAACGTATCCATACCCGGGCCATTCACA
JC	932	.	Xen14_138	1231	1	Xen14_166	327	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=3	flanking_left=130	flanking_right=150	frequency=2.199e-02	junction_possible_overlap_registers=147	key=Xen14_138__1231__1__Xen14_166__326__1__1____130__150__0__0	max_left=129	max_left_minus=126	max_left_plus=129	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=27	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=27	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.01	new_junction_read_count=18	polymorphism_frequency=2.199e-02	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=1505	side_2_redundant=0	total_non_overlap_reads=18
JC	933	.	Xen14_138	1231	1	Xen14_17	80156	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=3	flanking_left=130	flanking_right=150	frequency=6.495e-02	junction_possible_overlap_registers=147	key=Xen14_138__1231__1__Xen14_17__80157__-1__1____130__150__0__0	max_left=129	max_left_minus=126	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=28	max_min_right_minus=28	max_min_right_plus=27	max_pos_hash_score=294	max_right=28	max_right_minus=28	max_right_plus=27	neg_log10_pos_hash_p_value=15.3	new_junction_coverage=0.05	new_junction_read_count=8	polymorphism_frequency=6.495e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=8
JC	934	.	Xen14_138	1232	1	Xen14_143	808	1	-2	alignment_overlap=-2	coverage_minus=42	coverage_plus=37	flanking_left=130	flanking_right=150	frequency=1.133e-01	junction_possible_overlap_registers=146	key=Xen14_138__1232__1__Xen14_143__808__1__-2__GT__130__150__0__0	max_left=126	max_left_minus=126	max_left_plus=116	max_min_left=52	max_min_left_minus=50	max_min_left_plus=52	max_min_right=69	max_min_right_minus=69	max_min_right_plus=68	max_pos_hash_score=292	max_right=147	max_right_minus=147	max_right_plus=146	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.17	new_junction_read_count=83	polymorphism_frequency=1.133e-01	pos_hash_score=51	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.43	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1221	side_2_redundant=0	total_non_overlap_reads=79	unique_read_sequence=GT
JC	935	.	Xen14_138	1232	1	Xen14_166	103	1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=36	flanking_left=130	flanking_right=150	frequency=4.455e-02	junction_possible_overlap_registers=148	key=Xen14_138__1232__1__Xen14_166__103__1__0____130__150__0__0	max_left=130	max_left_minus=126	max_left_plus=130	max_min_left=74	max_min_left_minus=74	max_min_left_plus=72	max_min_right=73	max_min_right_minus=72	max_min_right_plus=73	max_pos_hash_score=296	max_right=148	max_right_minus=146	max_right_plus=148	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.05	new_junction_read_count=74	polymorphism_frequency=4.455e-02	pos_hash_score=57	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=3078	side_2_redundant=0	total_non_overlap_reads=70
JC	936	.	Xen14_138	1232	1	Xen14_202	276	1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=41	flanking_left=130	flanking_right=146	frequency=1.691e-01	junction_possible_overlap_registers=148	key=Xen14_138__1232__1__Xen14_202__276__1__0____130__146__0__0	max_left=130	max_left_minus=126	max_left_plus=130	max_min_left=66	max_min_left_minus=66	max_min_left_plus=48	max_min_right=71	max_min_right_minus=71	max_min_right_plus=65	max_pos_hash_score=296	max_right=146	max_right_minus=146	max_right_plus=145	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.25	new_junction_read_count=106	polymorphism_frequency=1.691e-01	pos_hash_score=58	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.35	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=946	side_2_redundant=0	total_non_overlap_reads=93
JC	937	.	Xen14_138	1232	1	Xen14_206	331	-1	0	alignment_overlap=1	coverage_minus=45	coverage_plus=29	flanking_left=129	flanking_right=150	frequency=1.843e-01	junction_possible_overlap_registers=147	key=Xen14_138__1232__1__Xen14_206__332__-1__1____129__150__0__0	max_left=129	max_left_minus=125	max_left_plus=129	max_min_left=51	max_min_left_minus=46	max_min_left_plus=51	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=294	max_right=148	max_right_minus=143	max_right_plus=148	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.12	new_junction_read_count=79	polymorphism_frequency=1.843e-01	pos_hash_score=49	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=604	side_2_redundant=0	total_non_overlap_reads=74
JC	938	.	Xen14_138	1295	1	Xen14_141	1	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=3	flanking_left=67	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_138__1295__1__Xen14_141__1__1__0____67__150__1__0	max_left=57	max_left_minus=57	max_left_plus=32	max_min_left=57	max_min_left_minus=57	max_min_left_plus=32	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=296	max_right=137	max_right_minus=137	max_right_plus=127	neg_log10_pos_hash_p_value=13.1	new_junction_coverage=0.01	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	939	.	Xen14_138	1355	-1	Xen14_141	42	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.204e-02	junction_possible_overlap_registers=147	key=Xen14_138__1355__-1__Xen14_141__42__1__-1__A__150__150__0__0	max_left=39	max_left_minus=0	max_left_plus=39	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=147	max_right_minus=0	max_right_plus=147	neg_log10_pos_hash_p_value=16.8	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=1.204e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=653	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=A
JC	940	.	Xen14_138	1361	-1	Xen14_141	47	1	0	alignment_overlap=46	coverage_minus=26	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=102	key=Xen14_138__1361__-1__Xen14_141__1__1__46____150__150__0__0	max_left=99	max_left_minus=99	max_left_plus=96	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=47	max_pos_hash_score=204	max_right=72	max_right_minus=66	max_right_plus=72	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.06	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=46	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=102	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	941	.	Xen14_139	1349	-1	Xen14_25	73175	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=8	flanking_left=150	flanking_right=66	frequency=1	junction_possible_overlap_registers=137	key=Xen14_139__1349__-1__Xen14_25__73164__1__11____150__66__0__1	max_left=134	max_left_minus=129	max_left_plus=134	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=42	max_min_right_minus=42	max_min_right_plus=38	max_pos_hash_score=274	max_right=42	max_right_minus=42	max_right_plus=38	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11
JC	942	.	Xen14_139	1349	-1	Xen14_25	73182	1	-7	alignment_overlap=-7	coverage_minus=7	coverage_plus=16	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=141	key=Xen14_139__1349__-1__Xen14_25__73182__1__-7__CACCGGA__150__59__0__1	max_left=142	max_left_minus=142	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=36	max_pos_hash_score=282	max_right=55	max_right_minus=55	max_right_plus=36	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.31	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23	unique_read_sequence=CACCGGA
JC	943	.	Xen14_140	162	-1	Xen14_140	174	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=6.198e-03	junction_possible_overlap_registers=143	key=Xen14_140__162__-1__Xen14_140__179__-1__5____150__150__0__0	max_left=127	max_left_minus=127	max_left_plus=126	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=38	max_min_right_minus=18	max_min_right_plus=38	max_pos_hash_score=286	max_right=38	max_right_minus=18	max_right_plus=38	neg_log10_pos_hash_p_value=103.5	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=6.198e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=1006	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=952	side_2_redundant=0	total_non_overlap_reads=6
JC	944	.	Xen14_141	1	1	Xen14_162	1	1	-8	alignment_overlap=-8	coverage_minus=40	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_162__1__1__-8__GCTCTCCT__150__150__0__0	max_left=64	max_left_minus=62	max_left_plus=64	max_min_left=64	max_min_left_minus=62	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=140	max_right_minus=140	max_right_plus=132	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=GCTCTCCT
JC	945	.	Xen14_141	1	1	Xen14_39	48485	-1	-7	alignment_overlap=-7	coverage_minus=20	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_39__48485__-1__-7__GCTCTCC__150__150__0__0	max_left=62	max_left_minus=62	max_left_plus=57	max_min_left=62	max_min_left_minus=62	max_min_left_plus=57	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=142	max_right_minus=142	max_right_plus=141	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.05	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40	unique_read_sequence=GCTCTCC
JC	946	.	Xen14_141	1	1	Xen14_52	1	1	-7	alignment_overlap=-7	coverage_minus=22	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_52__1__1__-7__GCTCTCC__150__150__0__0	max_left=62	max_left_minus=59	max_left_plus=62	max_min_left=62	max_min_left_minus=59	max_min_left_plus=62	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=138	max_right_minus=129	max_right_plus=138	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.05	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54	unique_read_sequence=GCTCTCC
JC	947	.	Xen14_141	1	1	Xen14_54	28579	-1	-7	alignment_overlap=-7	coverage_minus=41	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_54__28579__-1__-7__GCTCTCC__150__150__0__0	max_left=65	max_left_minus=61	max_left_plus=65	max_min_left=65	max_min_left_minus=61	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=142	max_right_minus=137	max_right_plus=142	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.09	new_junction_read_count=86	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76	unique_read_sequence=GCTCTCC
JC	948	.	Xen14_141	1	1	Xen14_69	14625	-1	-8	alignment_overlap=-8	coverage_minus=17	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_69__14625__-1__-8__GCTCTCCT__150__150__0__0	max_left=64	max_left_minus=54	max_left_plus=64	max_min_left=64	max_min_left_minus=54	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=141	max_right_minus=137	max_right_plus=141	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.04	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39	unique_read_sequence=GCTCTCCT
JC	949	.	Xen14_141	1	1	Xen14_75	1	1	-8	alignment_overlap=-8	coverage_minus=21	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_75__1__1__-8__GCTCTCCT__150__150__0__0	max_left=64	max_left_minus=52	max_left_plus=64	max_min_left=64	max_min_left_minus=52	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=141	max_right_minus=141	max_right_plus=140	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.04	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41	unique_read_sequence=GCTCTCCT
JC	950	.	Xen14_141	1	1	Xen14_94	1	1	-9	alignment_overlap=-9	coverage_minus=10	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_141__1__1__Xen14_94__1__1__-9__GCTCTCCTG__150__150__0__0	max_left=51	max_left_minus=51	max_left_plus=51	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=135	max_right_minus=135	max_right_plus=134	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.01	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=GCTCTCCTG
JC	951	.	Xen14_142	64	-1	Xen14_27	343	-1	0	alignment_overlap=10	coverage_minus=9	coverage_plus=4	flanking_left=64	flanking_right=150	frequency=4.065e-02	junction_possible_overlap_registers=138	key=Xen14_142__74__-1__Xen14_27__343__-1__10____64__150__1__0	max_left=47	max_left_minus=47	max_left_plus=28	max_min_left=47	max_min_left_minus=47	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=133	max_right_minus=122	max_right_plus=133	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.15	new_junction_read_count=13	polymorphism_frequency=4.065e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.52	side_2_overlap=10	side_2_possible_overlap_registers=148	side_2_read_count=329	side_2_redundant=0	total_non_overlap_reads=13
JC	952	.	Xen14_142	75	-1	Xen14_159	729	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=4	flanking_left=75	flanking_right=150	frequency=3.400e-01	junction_possible_overlap_registers=148	key=Xen14_142__75__-1__Xen14_159__729__-1__0____75__150__1__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=73	max_min_left_minus=73	max_min_left_plus=63	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=104	max_right_minus=102	max_right_plus=104	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.20	new_junction_read_count=17	polymorphism_frequency=3.400e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=16
JC	953	.	Xen14_143	74	1	Xen14_143	77	-1	-3	alignment_overlap=-3	coverage_minus=318	coverage_plus=331	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=145	key=Xen14_143__74__1__Xen14_143__77__-1__-3__AGC__150__77__0__0	max_left=144	max_left_minus=142	max_left_plus=144	max_min_left=72	max_min_left_minus=72	max_min_left_plus=72	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=290	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.88	new_junction_read_count=738	polymorphism_frequency=8.646e-01	pos_hash_score=138	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.17	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=146	side_2_redundant=0	total_non_overlap_reads=649	unique_read_sequence=AGC
JC	954	.	Xen14_143	77	-1	Xen14_47	36189	1	-22	alignment_overlap=-22	coverage_minus=5	coverage_plus=4	flanking_left=77	flanking_right=86	frequency=1.902e-01	junction_possible_overlap_registers=126	key=Xen14_143__77__-1__Xen14_47__36189__1__-22__GCTCTGCACTGACACGTGCCGA__77__86__0__0	max_left=47	max_left_minus=44	max_left_plus=47	max_min_left=47	max_min_left_minus=44	max_min_left_plus=47	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=252	max_right=86	max_right_minus=86	max_right_plus=86	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.06	new_junction_read_count=24	polymorphism_frequency=1.902e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=146	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=GCTCTGCACTGACACGTGCCGA
JC	955	.	Xen14_143	77	-1	Xen14_90	74	-1	-24	alignment_overlap=-24	coverage_minus=6	coverage_plus=3	flanking_left=77	flanking_right=74	frequency=1.863e-01	junction_possible_overlap_registers=124	key=Xen14_143__77__-1__Xen14_90__74__-1__-24__GCTCTGCACTGACACGTGCCGAAG__77__74__0__1	max_left=55	max_left_minus=51	max_left_plus=55	max_min_left=55	max_min_left_minus=51	max_min_left_plus=55	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=248	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.07	new_junction_read_count=28	polymorphism_frequency=1.863e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=146	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9	unique_read_sequence=GCTCTGCACTGACACGTGCCGAAG
JC	956	.	Xen14_143	808	1	Xen14_94	75	-1	-2	alignment_overlap=-2	coverage_minus=6	coverage_plus=5	flanking_left=150	flanking_right=75	frequency=1.230e-02	junction_possible_overlap_registers=146	key=Xen14_143__808__1__Xen14_94__75__-1__-2__AC__150__75__0__1	max_left=94	max_left_minus=90	max_left_plus=94	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=72	max_min_right_minus=72	max_min_right_plus=72	max_pos_hash_score=292	max_right=72	max_right_minus=72	max_right_plus=72	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.03	new_junction_read_count=15	polymorphism_frequency=1.230e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1221	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11	unique_read_sequence=AC
JC	957	.	Xen14_143	812	-1	Xen14_180	73	-1	0	alignment_overlap=2	coverage_minus=25	coverage_plus=23	flanking_left=150	flanking_right=73	frequency=5.014e-02	junction_possible_overlap_registers=146	key=Xen14_143__812__-1__Xen14_180__75__-1__2____150__73__0__1	max_left=122	max_left_minus=108	max_left_plus=122	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=292	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.13	new_junction_read_count=64	polymorphism_frequency=5.014e-02	pos_hash_score=31	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.44	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=1229	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=48
JC	958	.	Xen14_143	812	-1	Xen14_38	48184	1	0	alignment_overlap=2	coverage_minus=21	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=8.291e-02	junction_possible_overlap_registers=146	key=Xen14_143__812__-1__Xen14_38__48182__1__2____150__150__0__0	max_left=122	max_left_minus=108	max_left_plus=122	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=42	max_min_right_minus=42	max_min_right_plus=39	max_pos_hash_score=292	max_right=107	max_right_minus=90	max_right_plus=107	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.12	new_junction_read_count=60	polymorphism_frequency=8.291e-02	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.44	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=1229	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=40
JC	959	.	Xen14_145	1	1	Xen14_183	44	1	0	alignment_overlap=43	coverage_minus=25	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_145__1__1__Xen14_183__1__1__43____150__150__0__0	max_left=71	max_left_minus=71	max_left_plus=63	max_min_left=52	max_min_left_minus=52	max_min_left_plus=50	max_min_right=52	max_min_right_minus=52	max_min_right_plus=52	max_pos_hash_score=210	max_right=105	max_right_minus=94	max_right_plus=105	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.20	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=60
JC	960	.	Xen14_145	1	1	Xen14_32	55348	-1	0	alignment_overlap=43	coverage_minus=14	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_145__1__1__Xen14_32__55391__-1__43____150__150__0__0	max_left=71	max_left_minus=70	max_left_plus=71	max_min_left=53	max_min_left_minus=52	max_min_left_plus=53	max_min_right=53	max_min_right_minus=53	max_min_right_plus=52	max_pos_hash_score=210	max_right=104	max_right_minus=101	max_right_plus=104	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.13	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	961	.	Xen14_145	1	1	Xen14_54	42	1	0	alignment_overlap=41	coverage_minus=155	coverage_plus=178	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=107	key=Xen14_145__1__1__Xen14_54__1__1__41____150__150__0__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=54	max_min_left_minus=54	max_min_left_plus=54	max_min_right=53	max_min_right_minus=53	max_min_right_plus=52	max_pos_hash_score=214	max_right=105	max_right_minus=103	max_right_plus=105	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.05	new_junction_read_count=345	polymorphism_frequency=1.000e+00	pos_hash_score=109	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=41	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=107	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=333
JC	962	.	Xen14_145	1	1	Xen14_85	11155	-1	0	alignment_overlap=42	coverage_minus=29	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=106	key=Xen14_145__1__1__Xen14_85__11197__-1__42____150__150__0__0	max_left=73	max_left_minus=66	max_left_plus=73	max_min_left=53	max_min_left_minus=53	max_min_left_plus=53	max_min_right=53	max_min_right_minus=51	max_min_right_plus=53	max_pos_hash_score=212	max_right=100	max_right_minus=100	max_right_plus=99	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.19	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=42	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=106	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	963	.	Xen14_145	1	1	Xen14_86	3481	-1	-33	alignment_overlap=-33	coverage_minus=15	coverage_plus=39	flanking_left=150	flanking_right=150	frequency=6.691e-01	junction_possible_overlap_registers=115	key=Xen14_145__1__1__Xen14_86__3481__-1__-33__GGAGGCAATTGCAATATCTCTGTGAACTTACAC__150__150__0__0	max_left=109	max_left_minus=109	max_left_plus=106	max_min_left=50	max_min_left_minus=46	max_min_left_plus=50	max_min_right=55	max_min_right_minus=46	max_min_right_plus=55	max_pos_hash_score=230	max_right=115	max_right_minus=113	max_right_plus=115	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.17	new_junction_read_count=55	polymorphism_frequency=6.691e-01	pos_hash_score=30	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=70	side_2_redundant=0	total_non_overlap_reads=54	unique_read_sequence=GGAGGCAATTGCAATATCTCTGTGAACTTACAC
JC	964	.	Xen14_145	236	-1	Xen14_145	269	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.758e-03	junction_possible_overlap_registers=145	key=Xen14_145__236__-1__Xen14_145__272__-1__3____150__150__0__0	max_left=111	max_left_minus=107	max_left_plus=111	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=37	max_min_right_plus=60	max_pos_hash_score=290	max_right=60	max_right_minus=37	max_right_plus=60	neg_log10_pos_hash_p_value=74.6	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=3.758e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=818	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=789	side_2_redundant=0	total_non_overlap_reads=3
JC	965	.	Xen14_148	989	-1	Xen14_182	431	-1	0	alignment_overlap=47	coverage_minus=29	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=101	key=Xen14_148__989__-1__Xen14_182__478__-1__47____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=101	max_min_left=49	max_min_left_minus=49	max_min_left_plus=48	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=202	max_right=102	max_right_minus=102	max_right_plus=100	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.66	new_junction_read_count=57	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=47	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=101	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57
JC	966	.	Xen14_149	1	1	Xen14_82	1	1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=61	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_149__1__1__Xen14_82__1__1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=144	max_min_left=74	max_min_left_minus=70	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=70	max_pos_hash_score=296	max_right=147	max_right_minus=143	max_right_plus=147	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.96	new_junction_read_count=123	polymorphism_frequency=1.000e+00	pos_hash_score=85	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=123
JC	967	.	Xen14_149	980	-1	Xen14_82	1	1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=48	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_149__980__-1__Xen14_82__1__1__0____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=69	max_min_left_minus=69	max_min_left_plus=68	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=296	max_right=147	max_right_minus=139	max_right_plus=147	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.81	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=102
JC	968	.	Xen14_150	29	1	Xen14_191	128	1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=6.017e-01	junction_possible_overlap_registers=148	key=Xen14_150__29__1__Xen14_191__128__1__0____150__150__0__0	max_left=45	max_left_minus=38	max_left_plus=45	max_min_left=45	max_min_left_minus=38	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=147	max_right_minus=147	max_right_plus=147	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.25	new_junction_read_count=71	polymorphism_frequency=6.017e-01	pos_hash_score=27	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.23	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=38
JC	969	.	Xen14_156	328	1	Xen14_156	321	-1	0	alignment_overlap=8	coverage_minus=15	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=1.294e-01	junction_possible_overlap_registers=140	key=Xen14_156__328__1__Xen14_156__329__-1__8____150__150__0__0	max_left=140	max_left_minus=135	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=70	max_min_right_minus=67	max_min_right_plus=70	max_pos_hash_score=280	max_right=70	max_right_minus=67	max_right_plus=70	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.16	new_junction_read_count=32	polymorphism_frequency=1.294e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=228	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=215	side_2_redundant=0	total_non_overlap_reads=27
JC	970	.	Xen14_156	328	1	Xen14_88	9844	-1	0	alignment_overlap=8	coverage_minus=21	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=2.204e-01	junction_possible_overlap_registers=140	key=Xen14_156__328__1__Xen14_88__9852__-1__8____150__150__0__0	max_left=65	max_left_minus=65	max_left_plus=65	max_min_left=65	max_min_left_minus=65	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=140	max_right_minus=130	max_right_plus=140	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.33	new_junction_read_count=44	polymorphism_frequency=2.204e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=253	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=40
JC	971	.	Xen14_159	729	-1	Xen14_183	325	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=8.706e-02	junction_possible_overlap_registers=147	key=Xen14_159__729__-1__Xen14_183__324__1__1____150__150__0__0	max_left=103	max_left_minus=103	max_left_plus=101	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=66	max_min_right_minus=63	max_min_right_plus=66	max_pos_hash_score=294	max_right=66	max_right_minus=63	max_right_plus=66	neg_log10_pos_hash_p_value=15.3	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=8.706e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=135	side_2_redundant=0	total_non_overlap_reads=8
JC	972	.	Xen14_159	729	-1	Xen14_60	18896	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=29	flanking_left=150	flanking_right=150	frequency=4.664e-01	junction_possible_overlap_registers=148	key=Xen14_159__729__-1__Xen14_60__18896__-1__0____150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=145	max_min_left=69	max_min_left_minus=69	max_min_left_plus=68	max_min_right=39	max_min_right_minus=34	max_min_right_plus=39	max_pos_hash_score=296	max_right=138	max_right_minus=138	max_right_plus=136	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.54	new_junction_read_count=52	polymorphism_frequency=4.664e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=52
JC	973	.	Xen14_16	81841	1	Xen14_43	39550	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=6	flanking_left=100	flanking_right=150	frequency=1.439e-01	junction_possible_overlap_registers=147	key=Xen14_16__81841__1__Xen14_43__39549__1__1____100__150__0__0	max_left=100	max_left_minus=91	max_left_plus=100	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=70	max_min_right_minus=65	max_min_right_plus=70	max_pos_hash_score=294	max_right=70	max_right_minus=65	max_right_plus=70	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.13	new_junction_read_count=15	polymorphism_frequency=1.439e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=8
JC	974	.	Xen14_16	81841	1	Xen14_96	5675	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=3	flanking_left=100	flanking_right=150	frequency=1.661e-01	junction_possible_overlap_registers=147	key=Xen14_16__81841__1__Xen14_96__5676__-1__1____100__150__0__0	max_left=22	max_left_minus=15	max_left_plus=22	max_min_left=22	max_min_left_minus=15	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=135	max_right_minus=135	max_right_plus=131	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.11	new_junction_read_count=13	polymorphism_frequency=1.661e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=6
JC	975	.	Xen14_16	81842	1	Xen14_168	629	-1	-15	alignment_overlap=-15	coverage_minus=12	coverage_plus=9	flanking_left=100	flanking_right=150	frequency=3.982e-01	junction_possible_overlap_registers=133	key=Xen14_16__81842__1__Xen14_168__629__-1__-15__AGCTAGGCTGGGGGG__100__150__0__0	max_left=98	max_left_minus=89	max_left_plus=98	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=55	max_min_right_minus=47	max_min_right_plus=55	max_pos_hash_score=266	max_right=134	max_right_minus=134	max_right_plus=129	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.03	new_junction_read_count=22	polymorphism_frequency=3.982e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21	unique_read_sequence=AGCTAGGCTGGGGGG
JC	976	.	Xen14_16	81842	1	Xen14_25	77	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=8	flanking_left=100	flanking_right=77	frequency=1.190e-01	junction_possible_overlap_registers=148	key=Xen14_16__81842__1__Xen14_25__77__-1__0____100__77__0__1	max_left=100	max_left_minus=88	max_left_plus=100	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=71	max_min_right_minus=64	max_min_right_plus=71	max_pos_hash_score=296	max_right=71	max_right_minus=64	max_right_plus=71	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.190e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	977	.	Xen14_16	81842	1	Xen14_96	3976	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=8	flanking_left=99	flanking_right=150	frequency=1.343e-01	junction_possible_overlap_registers=147	key=Xen14_16__81842__1__Xen14_96__3975__1__1____99__150__0__0	max_left=99	max_left_minus=99	max_left_plus=99	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=70	max_min_right_minus=65	max_min_right_plus=70	max_pos_hash_score=294	max_right=70	max_right_minus=65	max_right_plus=70	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.12	new_junction_read_count=14	polymorphism_frequency=1.343e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=11
JC	978	.	Xen14_16	81865	1	Xen14_20	75235	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=8	flanking_left=77	flanking_right=150	frequency=8.039e-02	junction_possible_overlap_registers=148	key=Xen14_16__81865__1__Xen14_20__75235__1__0____77__150__0__0	max_left=56	max_left_minus=56	max_left_plus=22	max_min_left=56	max_min_left_minus=56	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=145	max_right_minus=145	max_right_plus=144	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.46	new_junction_read_count=50	polymorphism_frequency=8.039e-02	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=10.30	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1076	side_2_redundant=0	total_non_overlap_reads=50
JC	979	.	Xen14_160	1	1	Xen14_189	446	-1	0	alignment_overlap=7	coverage_minus=26	coverage_plus=42	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_160__1__1__Xen14_189__453__-1__7____150__150__0__0	max_left=142	max_left_minus=128	max_left_plus=142	max_min_left=65	max_min_left_minus=56	max_min_left_plus=65	max_min_right=70	max_min_right_minus=65	max_min_right_plus=70	max_pos_hash_score=282	max_right=142	max_right_minus=139	max_right_plus=142	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.42	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68
JC	980	.	Xen14_160	1	1	Xen14_189	447	-1	0	alignment_overlap=6	coverage_minus=30	coverage_plus=50	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=142	key=Xen14_160__1__1__Xen14_189__453__-1__6____150__150__0__0	max_left=143	max_left_minus=137	max_left_plus=143	max_min_left=71	max_min_left_minus=67	max_min_left_plus=71	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=284	max_right=143	max_right_minus=136	max_right_plus=143	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.50	new_junction_read_count=80	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80
JC	981	.	Xen14_160	780	-1	Xen14_96	5300	-1	-25	alignment_overlap=-25	coverage_minus=32	coverage_plus=36	flanking_left=150	flanking_right=150	frequency=6.889e-01	junction_possible_overlap_registers=123	key=Xen14_160__780__-1__Xen14_96__5300__-1__-25__CTACACGGGAGAAATTCGATGTCGA__150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=62	max_min_left_minus=62	max_min_left_plus=61	max_min_right=61	max_min_right_minus=61	max_min_right_plus=58	max_pos_hash_score=246	max_right=120	max_right_minus=120	max_right_plus=116	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.56	new_junction_read_count=69	polymorphism_frequency=6.889e-01	pos_hash_score=50	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=CTACACGGGAGAAATTCGATGTCGA
JC	982	.	Xen14_161	1	1	Xen14_178	44	-1	-38	alignment_overlap=-38	coverage_minus=4	coverage_plus=2	flanking_left=150	flanking_right=44	frequency=3.584e-01	junction_possible_overlap_registers=110	key=Xen14_161__1__1__Xen14_178__44__-1__-38__GTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACG__150__44__0__0	max_left=99	max_left_minus=98	max_left_plus=99	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=27	max_min_right_minus=21	max_min_right_plus=27	max_pos_hash_score=220	max_right=27	max_right_minus=21	max_right_plus=27	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.14	new_junction_read_count=11	polymorphism_frequency=3.584e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=GTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACG
JC	983	.	Xen14_162	691	1	Xen14_170	543	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=6	flanking_left=75	flanking_right=76	frequency=2.894e-01	junction_possible_overlap_registers=147	key=Xen14_162__690__1__Xen14_170__543__1__1____75__76__1__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=74	max_min_left_minus=54	max_min_left_plus=74	max_min_right=74	max_min_right_minus=74	max_min_right_plus=68	max_pos_hash_score=294	max_right=76	max_right_minus=76	max_right_plus=76	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.25	new_junction_read_count=36	polymorphism_frequency=2.894e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=8
JC	984	.	Xen14_163	753	-1	Xen14_170	168	-1	0	alignment_overlap=1	coverage_minus=39	coverage_plus=33	flanking_left=150	flanking_right=150	frequency=4.915e-01	junction_possible_overlap_registers=147	key=Xen14_163__753__-1__Xen14_170__169__-1__1____150__150__0__0	max_left=146	max_left_minus=144	max_left_plus=146	max_min_left=73	max_min_left_minus=73	max_min_left_plus=67	max_min_right=72	max_min_right_minus=72	max_min_right_plus=71	max_pos_hash_score=294	max_right=145	max_right_minus=144	max_right_plus=145	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.35	new_junction_read_count=72	polymorphism_frequency=4.915e-01	pos_hash_score=57	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=149	side_2_redundant=0	total_non_overlap_reads=72
JC	985	.	Xen14_163	753	-1	Xen14_193	434	-1	0	alignment_overlap=10	coverage_minus=135	coverage_plus=123	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=138	key=Xen14_163__753__-1__Xen14_193__444__-1__10____150__150__0__0	max_left=139	max_left_minus=135	max_left_plus=139	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=70	max_min_right_minus=69	max_min_right_plus=70	max_pos_hash_score=276	max_right=139	max_right_minus=139	max_right_plus=139	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.96	new_junction_read_count=259	polymorphism_frequency=1.000e+00	pos_hash_score=132	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=258
JC	986	.	Xen14_166	215	-1	Xen14_166	308	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.689e-03	junction_possible_overlap_registers=146	key=Xen14_166__215__-1__Xen14_166__306__1__2____150__150__0__0	max_left=120	max_left_minus=103	max_left_plus=120	max_min_left=33	max_min_left_minus=33	max_min_left_plus=0	max_min_right=28	max_min_right_minus=26	max_min_right_plus=28	max_pos_hash_score=292	max_right=120	max_right_minus=120	max_right_plus=28	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=1.689e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=3091	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=1679	side_2_redundant=0	total_non_overlap_reads=4
JC	987	.	Xen14_166	326	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=13	flanking_left=150	flanking_right=75	frequency=8.469e-03	junction_possible_overlap_registers=148	key=Xen14_166__326__1__Xen14_94__75__-1__0____150__75__0__1	max_left=148	max_left_minus=0	max_left_plus=148	max_min_left=44	max_min_left_minus=0	max_min_left_plus=44	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=296	max_right=74	max_right_minus=0	max_right_plus=74	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.01	new_junction_read_count=13	polymorphism_frequency=8.469e-03	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1522	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	988	.	Xen14_166	330	-1	Xen14_180	75	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=12	flanking_left=150	flanking_right=75	frequency=2.133e-02	junction_possible_overlap_registers=148	key=Xen14_166__330__-1__Xen14_180__75__-1__0____150__75__0__1	max_left=104	max_left_minus=104	max_left_plus=103	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=12.2	new_junction_coverage=0.02	new_junction_read_count=32	polymorphism_frequency=2.133e-02	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1468	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	989	.	Xen14_166	330	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=33	flanking_left=150	flanking_right=150	frequency=1.219e-01	junction_possible_overlap_registers=148	key=Xen14_166__330__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=149	max_left_minus=149	max_left_plus=148	max_min_left=70	max_min_left_minus=69	max_min_left_plus=70	max_min_right=45	max_min_right_minus=45	max_min_right_plus=42	max_pos_hash_score=296	max_right=125	max_right_minus=125	max_right_plus=124	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.08	new_junction_read_count=110	polymorphism_frequency=1.219e-01	pos_hash_score=56	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1468	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=92
JC	990	.	Xen14_166	403	1	Xen14_166	454	1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.511e-03	junction_possible_overlap_registers=143	key=Xen14_166__403__1__Xen14_166__449__1__5____150__150__0__0	max_left=51	max_left_minus=50	max_left_plus=51	max_min_left=51	max_min_left_minus=50	max_min_left_plus=51	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=110	max_right_minus=110	max_right_plus=83	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.00	new_junction_read_count=7	polymorphism_frequency=3.511e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=1797	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=2237	side_2_redundant=0	total_non_overlap_reads=5
JC	991	.	Xen14_166	423	1	Xen14_166	457	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=6.751e-03	junction_possible_overlap_registers=148	key=Xen14_166__423__1__Xen14_166__457__1__0____150__150__0__0	max_left=44	max_left_minus=44	max_left_plus=33	max_min_left=44	max_min_left_minus=44	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=143	max_right_minus=137	max_right_plus=143	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.01	new_junction_read_count=15	polymorphism_frequency=6.751e-03	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2061	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=2353	side_2_redundant=0	total_non_overlap_reads=15
JC	992	.	Xen14_166	462	-1	Xen14_166	480	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=3.234e-03	junction_possible_overlap_registers=143	key=Xen14_166__462__-1__Xen14_166__485__-1__5____150__150__0__0	max_left=143	max_left_minus=143	max_left_plus=98	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=34	max_min_right_minus=22	max_min_right_plus=34	max_pos_hash_score=286	max_right=34	max_right_minus=22	max_right_plus=34	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.00	new_junction_read_count=8	polymorphism_frequency=3.234e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=2458	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=2557	side_2_redundant=0	total_non_overlap_reads=8
JC	993	.	Xen14_166	669	-1	Xen14_17	79825	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.271e-02	junction_possible_overlap_registers=147	key=Xen14_166__669__-1__Xen14_17__79825__-1__-1__A__150__150__0__0	max_left=108	max_left_minus=108	max_left_plus=101	max_min_left=74	max_min_left_minus=74	max_min_left_plus=62	max_min_right=69	max_min_right_minus=69	max_min_right_plus=48	max_pos_hash_score=294	max_right=109	max_right_minus=89	max_right_plus=109	neg_log10_pos_hash_p_value=19.2	new_junction_coverage=0.01	new_junction_read_count=7	polymorphism_frequency=1.271e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.17	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=434	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.66	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=661	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=A
JC	994	.	Xen14_166	670	-1	Xen14_17	79824	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.232e-02	junction_possible_overlap_registers=147	key=Xen14_166__670__-1__Xen14_17__79824__-1__-1__T__150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=23	max_min_left=64	max_min_left_minus=64	max_min_left_plus=23	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=294	max_right=148	max_right_minus=85	max_right_plus=148	neg_log10_pos_hash_p_value=18.5	new_junction_coverage=0.01	new_junction_read_count=7	polymorphism_frequency=1.232e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.16	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=424	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.91	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=706	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=T
JC	995	.	Xen14_166	671	-1	Xen14_17	79823	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=8.671e-03	junction_possible_overlap_registers=147	key=Xen14_166__671__-1__Xen14_17__79823__-1__-1__T__150__150__0__0	max_left=95	max_left_minus=65	max_left_plus=95	max_min_left=65	max_min_left_minus=65	max_min_left_plus=53	max_min_right=54	max_min_right_minus=0	max_min_right_plus=54	max_pos_hash_score=294	max_right=127	max_right_minus=84	max_right_plus=127	neg_log10_pos_hash_p_value=20.0	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=8.671e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.16	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=415	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=736	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=T
JC	996	.	Xen14_166	673	-1	Xen14_17	79821	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.709e-02	junction_possible_overlap_registers=147	key=Xen14_166__673__-1__Xen14_17__79821__-1__-1__A__150__150__0__0	max_left=112	max_left_minus=112	max_left_plus=110	max_min_left=71	max_min_left_minus=70	max_min_left_plus=71	max_min_right=39	max_min_right_minus=37	max_min_right_plus=39	max_pos_hash_score=294	max_right=135	max_right_minus=133	max_right_plus=135	neg_log10_pos_hash_p_value=17.8	new_junction_coverage=0.01	new_junction_read_count=10	polymorphism_frequency=1.709e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.15	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=390	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.26	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=768	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=A
JC	997	.	Xen14_166	674	-1	Xen14_17	79820	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.035e-02	junction_possible_overlap_registers=147	key=Xen14_166__674__-1__Xen14_17__79820__-1__-1__C__150__150__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=63	max_min_left_minus=63	max_min_left_plus=58	max_min_right=34	max_min_right_minus=34	max_min_right_plus=23	max_pos_hash_score=294	max_right=91	max_right_minus=84	max_right_plus=91	neg_log10_pos_hash_p_value=19.2	new_junction_coverage=0.00	new_junction_read_count=6	polymorphism_frequency=1.035e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=364	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.38	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=791	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=C
JC	998	.	Xen14_166	674	-1	Xen14_17	79820	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=6.913e-03	junction_possible_overlap_registers=147	key=Xen14_166__674__-1__Xen14_17__79820__-1__-1__G__150__150__0__0	max_left=136	max_left_minus=0	max_left_plus=136	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=294	max_right=118	max_right_minus=0	max_right_plus=118	neg_log10_pos_hash_p_value=20.8	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=6.913e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.14	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=366	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.38	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=791	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=G
JC	999	.	Xen14_166	676	-1	Xen14_17	79818	-1	-1	alignment_overlap=-1	coverage_minus=8	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.877e-02	junction_possible_overlap_registers=147	key=Xen14_166__676__-1__Xen14_17__79818__-1__-1__T__150__150__0__0	max_left=147	max_left_minus=147	max_left_plus=74	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=294	max_right=143	max_right_minus=57	max_right_plus=143	neg_log10_pos_hash_p_value=17.2	new_junction_coverage=0.01	new_junction_read_count=11	polymorphism_frequency=1.877e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=307	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.72	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=851	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=T
JC	1000	.	Xen14_166	677	-1	Xen14_17	79817	-1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.683e-02	junction_possible_overlap_registers=147	key=Xen14_166__677__-1__Xen14_17__79817__-1__-1__C__150__150__0__0	max_left=129	max_left_minus=110	max_left_plus=129	max_min_left=61	max_min_left_minus=45	max_min_left_plus=61	max_min_right=71	max_min_right_minus=71	max_min_right_plus=19	max_pos_hash_score=294	max_right=128	max_right_minus=124	max_right_plus=128	neg_log10_pos_hash_p_value=17.2	new_junction_coverage=0.01	new_junction_read_count=10	polymorphism_frequency=1.683e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=298	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.87	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=878	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=C
JC	1001	.	Xen14_166	677	-1	Xen14_17	79817	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=8.460e-03	junction_possible_overlap_registers=147	key=Xen14_166__677__-1__Xen14_17__79817__-1__-1__G__150__150__0__0	max_left=125	max_left_minus=99	max_left_plus=125	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=70	max_min_right_minus=70	max_min_right_plus=26	max_pos_hash_score=294	max_right=148	max_right_minus=70	max_right_plus=148	neg_log10_pos_hash_p_value=20.0	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=8.460e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.11	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=299	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.88	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=881	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	1002	.	Xen14_166	679	-1	Xen14_17	79815	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=6.808e-03	junction_possible_overlap_registers=147	key=Xen14_166__679__-1__Xen14_17__79815__-1__-1__A__150__150__0__0	max_left=110	max_left_minus=110	max_left_plus=62	max_min_left=72	max_min_left_minus=72	max_min_left_plus=62	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=294	max_right=87	max_right_minus=77	max_right_plus=87	neg_log10_pos_hash_p_value=20.8	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=6.808e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=205	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=5.38	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=970	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=A
JC	1003	.	Xen14_166	680	-1	Xen14_17	79814	-1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=9.588e-03	junction_possible_overlap_registers=147	key=Xen14_166__680__-1__Xen14_17__79814__-1__-1__A__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=55	max_min_left=55	max_min_left_minus=11	max_min_left_plus=55	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=294	max_right=138	max_right_minus=138	max_right_plus=124	neg_log10_pos_hash_p_value=20.0	new_junction_coverage=0.00	new_junction_read_count=6	polymorphism_frequency=9.588e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=188	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=5.88	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1060	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=A
JC	1004	.	Xen14_166	681	-1	Xen14_17	79813	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=8.028e-03	junction_possible_overlap_registers=147	key=Xen14_166__681__-1__Xen14_17__79813__-1__-1__T__150__150__0__0	max_left=145	max_left_minus=145	max_left_plus=82	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=55	max_pos_hash_score=294	max_right=67	max_right_minus=67	max_right_plus=55	neg_log10_pos_hash_p_value=20.0	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=8.028e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=6.10	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1100	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=T
JC	1005	.	Xen14_166	685	-1	Xen14_17	79810	-1	0	alignment_overlap=26	coverage_minus=1732	coverage_plus=1400	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_166__685__-1__Xen14_17__79836__-1__26____150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=61	max_min_left_minus=61	max_min_left_plus=61	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=244	max_right=123	max_right_minus=123	max_right_plus=122	neg_log10_pos_hash_p_value=-0.0	new_junction_coverage=2.80	new_junction_read_count=3228	polymorphism_frequency=9.519e-01	pos_hash_score=234	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.19	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=326	side_2_redundant=0	total_non_overlap_reads=3132
JC	1006	.	Xen14_168	1	1	Xen14_21	25	1	0	alignment_overlap=24	coverage_minus=11	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_168__1__1__Xen14_21__1__1__24____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=36	max_min_left=55	max_min_left_minus=55	max_min_left_plus=36	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=248	max_right=125	max_right_minus=125	max_right_plus=119	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.03	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=24	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=124	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=16
JC	1007	.	Xen14_168	1	1	Xen14_29	59	-1	-36	alignment_overlap=-36	coverage_minus=5	coverage_plus=7	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=112	key=Xen14_168__1__1__Xen14_29__59__-1__-36__TCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCC__150__59__0__1	max_left=59	max_left_minus=55	max_left_plus=59	max_min_left=55	max_min_left_minus=55	max_min_left_plus=55	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=224	max_right=59	max_right_minus=59	max_right_plus=57	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.02	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=6	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12	unique_read_sequence=TCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCC
JC	1008	.	Xen14_168	1	1	Xen14_31	27	1	0	alignment_overlap=26	coverage_minus=200	coverage_plus=231	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_168__1__1__Xen14_31__1__1__26____150__150__0__0	max_left=123	max_left_minus=122	max_left_plus=123	max_min_left=59	max_min_left_minus=59	max_min_left_plus=58	max_min_right=61	max_min_right_minus=59	max_min_right_plus=61	max_pos_hash_score=244	max_right=123	max_right_minus=122	max_right_plus=123	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.62	new_junction_read_count=435	polymorphism_frequency=1.000e+00	pos_hash_score=144	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=431
JC	1009	.	Xen14_168	1	1	Xen14_46	40324	-1	0	alignment_overlap=27	coverage_minus=23	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=121	key=Xen14_168__1__1__Xen14_46__40351__-1__27____150__150__0__0	max_left=69	max_left_minus=67	max_left_plus=69	max_min_left=58	max_min_left_minus=58	max_min_left_plus=47	max_min_right=61	max_min_right_minus=61	max_min_right_plus=59	max_pos_hash_score=242	max_right=119	max_right_minus=119	max_right_plus=114	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.07	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45
JC	1010	.	Xen14_168	1	1	Xen14_67	28	1	0	alignment_overlap=27	coverage_minus=27	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=121	key=Xen14_168__1__1__Xen14_67__1__1__27____150__150__0__0	max_left=72	max_left_minus=71	max_left_plus=72	max_min_left=57	max_min_left_minus=55	max_min_left_plus=57	max_min_right=54	max_min_right_minus=52	max_min_right_plus=54	max_pos_hash_score=242	max_right=118	max_right_minus=118	max_right_plus=115	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.06	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	1011	.	Xen14_168	1	1	Xen14_68	27	1	0	alignment_overlap=26	coverage_minus=36	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_168__1__1__Xen14_68__1__1__26____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=72	max_min_left=61	max_min_left_minus=61	max_min_left_plus=60	max_min_right=62	max_min_right_minus=62	max_min_right_plus=53	max_pos_hash_score=244	max_right=122	max_right_minus=121	max_right_plus=122	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.10	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71
JC	1012	.	Xen14_168	1	1	Xen14_80	26	1	0	alignment_overlap=25	coverage_minus=43	coverage_plus=29	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_168__1__1__Xen14_80__1__1__25____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=62	max_min_left_minus=56	max_min_left_plus=62	max_min_right=61	max_min_right_minus=58	max_min_right_plus=61	max_pos_hash_score=246	max_right=122	max_right_minus=119	max_right_plus=122	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.10	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	1013	.	Xen14_168	13	1	Xen14_67	17	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.947e-02	junction_possible_overlap_registers=147	key=Xen14_168__13__1__Xen14_67__17__1__-1__A__150__150__0__0	max_left=120	max_left_minus=120	max_left_plus=46	max_min_left=46	max_min_left_minus=0	max_min_left_plus=46	max_min_right=58	max_min_right_minus=58	max_min_right_plus=0	max_pos_hash_score=294	max_right=103	max_right_minus=58	max_right_plus=103	neg_log10_pos_hash_p_value=13.2	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=3.947e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=142	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=5	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=A
JC	1014	.	Xen14_168	25	1	Xen14_67	33	-1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=33	frequency=2.166e-02	junction_possible_overlap_registers=141	key=Xen14_168__25__1__Xen14_67__40__-1__7____150__33__0__1	max_left=113	max_left_minus=113	max_left_plus=110	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=33	max_min_right_minus=33	max_min_right_plus=31	max_pos_hash_score=282	max_right=33	max_right_minus=33	max_right_plus=31	neg_log10_pos_hash_p_value=12.9	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=2.166e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.15	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=237	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	1015	.	Xen14_168	296	1	Xen14_190	374	1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=36	flanking_left=150	flanking_right=75	frequency=5.711e-02	junction_possible_overlap_registers=148	key=Xen14_168__296__1__Xen14_190__374__1__0____150__75__0__1	max_left=148	max_left_minus=148	max_left_plus=147	max_min_left=74	max_min_left_minus=74	max_min_left_plus=41	max_min_right=74	max_min_right_minus=74	max_min_right_plus=72	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=74	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.14	new_junction_read_count=112	polymorphism_frequency=5.711e-02	pos_hash_score=57	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1849	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=93
JC	1016	.	Xen14_168	298	-1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=7	flanking_left=150	flanking_right=84	frequency=2.719e-02	junction_possible_overlap_registers=148	key=Xen14_168__298__-1__Xen14_47__36191__1__0____150__84__0__0	max_left=70	max_left_minus=70	max_left_plus=70	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=83	neg_log10_pos_hash_p_value=15.1	new_junction_coverage=0.03	new_junction_read_count=27	polymorphism_frequency=2.719e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1842	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=13
JC	1017	.	Xen14_168	298	-1	Xen14_94	7510	1	0	alignment_overlap=0	coverage_minus=46	coverage_plus=38	flanking_left=150	flanking_right=75	frequency=4.461e-02	junction_possible_overlap_registers=148	key=Xen14_168__298__-1__Xen14_94__7510__1__0____150__75__0__1	max_left=145	max_left_minus=143	max_left_plus=145	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=69	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=69	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.11	new_junction_read_count=86	polymorphism_frequency=4.461e-02	pos_hash_score=50	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1842	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=84
JC	1018	.	Xen14_168	629	-1	Xen14_2	63	1	0	alignment_overlap=62	coverage_minus=16	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen14_168__629__-1__Xen14_2__1__1__62____150__150__0__0	max_left=41	max_left_minus=33	max_left_plus=41	max_min_left=41	max_min_left_minus=33	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=172	max_right=81	max_right_minus=81	max_right_plus=77	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.04	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=62	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	1019	.	Xen14_168	629	-1	Xen14_22	74419	-1	0	alignment_overlap=38	coverage_minus=33	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=110	key=Xen14_168__629__-1__Xen14_22__74457__-1__38____150__150__0__0	max_left=70	max_left_minus=69	max_left_plus=70	max_min_left=55	max_min_left_minus=54	max_min_left_plus=55	max_min_right=55	max_min_right_minus=55	max_min_right_plus=53	max_pos_hash_score=220	max_right=110	max_right_minus=110	max_right_plus=110	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.08	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52
JC	1020	.	Xen14_168	629	-1	Xen14_29	59	-1	-15	alignment_overlap=-15	coverage_minus=21	coverage_plus=33	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=133	key=Xen14_168__629__-1__Xen14_29__59__-1__-15__ACCCCCAGCCTAGCT__150__59__0__0	max_left=130	max_left_minus=120	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=56	max_pos_hash_score=266	max_right=59	max_right_minus=59	max_right_plus=56	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.08	new_junction_read_count=58	polymorphism_frequency=8.217e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=54	unique_read_sequence=ACCCCCAGCCTAGCT
JC	1021	.	Xen14_168	629	-1	Xen14_5	41	1	0	alignment_overlap=40	coverage_minus=23	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=108	key=Xen14_168__629__-1__Xen14_5__1__1__40____150__150__0__0	max_left=68	max_left_minus=68	max_left_plus=62	max_min_left=53	max_min_left_minus=53	max_min_left_plus=18	max_min_right=54	max_min_right_minus=54	max_min_right_plus=48	max_pos_hash_score=216	max_right=108	max_right_minus=91	max_right_plus=108	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.05	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=40	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=108	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	1022	.	Xen14_168	629	-1	Xen14_51	32233	1	-10	alignment_overlap=-10	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=79	frequency=6.961e-02	junction_possible_overlap_registers=138	key=Xen14_168__629__-1__Xen14_51__32233__1__-10__CCCCCCAGCC__150__79__0__0	max_left=138	max_left_minus=138	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=2	max_min_right_plus=4	max_pos_hash_score=276	max_right=4	max_right_minus=2	max_right_plus=4	neg_log10_pos_hash_p_value=19.7	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=6.961e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CCCCCCAGCC
JC	1023	.	Xen14_168	629	-1	Xen14_58	39	1	0	alignment_overlap=38	coverage_minus=23	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=110	key=Xen14_168__629__-1__Xen14_58__1__1__38____150__150__0__0	max_left=69	max_left_minus=61	max_left_plus=69	max_min_left=51	max_min_left_minus=50	max_min_left_plus=51	max_min_right=54	max_min_right_minus=51	max_min_right_plus=54	max_pos_hash_score=220	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.07	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	1024	.	Xen14_168	629	-1	Xen14_62	44	1	0	alignment_overlap=43	coverage_minus=15	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_168__629__-1__Xen14_62__1__1__43____150__150__0__0	max_left=71	max_left_minus=60	max_left_plus=71	max_min_left=43	max_min_left_minus=35	max_min_left_plus=43	max_min_right=50	max_min_right_minus=50	max_min_right_plus=47	max_pos_hash_score=210	max_right=103	max_right_minus=103	max_right_plus=97	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.05	new_junction_read_count=31	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	1025	.	Xen14_168	629	-1	Xen14_68	16325	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=12	flanking_left=150	flanking_right=58	frequency=1	junction_possible_overlap_registers=147	key=Xen14_168__629__-1__Xen14_68__16324__1__1____150__58__0__1	max_left=135	max_left_minus=126	max_left_plus=135	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=23	max_min_right_plus=57	max_pos_hash_score=294	max_right=57	max_right_minus=23	max_right_plus=57	neg_log10_pos_hash_p_value=18.0	new_junction_coverage=0.02	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	1026	.	Xen14_168	629	-1	Xen14_68	16345	-1	0	alignment_overlap=37	coverage_minus=129	coverage_plus=138	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=111	key=Xen14_168__629__-1__Xen14_68__16382__-1__37____150__150__0__0	max_left=111	max_left_minus=111	max_left_plus=111	max_min_left=56	max_min_left_minus=56	max_min_left_plus=56	max_min_right=56	max_min_right_minus=56	max_min_right_plus=51	max_pos_hash_score=222	max_right=112	max_right_minus=112	max_right_plus=112	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.43	new_junction_read_count=278	polymorphism_frequency=1.000e+00	pos_hash_score=107	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=37	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=111	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=267
JC	1027	.	Xen14_168	629	-1	Xen14_78	12516	-1	0	alignment_overlap=43	coverage_minus=28	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_168__629__-1__Xen14_78__12559__-1__43____150__150__0__0	max_left=65	max_left_minus=63	max_left_plus=65	max_min_left=52	max_min_left_minus=52	max_min_left_plus=51	max_min_right=53	max_min_right_minus=53	max_min_right_plus=42	max_pos_hash_score=210	max_right=106	max_right_minus=106	max_right_plus=103	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.07	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45
JC	1028	.	Xen14_169	1	1	Xen14_193	444	-1	-24	alignment_overlap=-24	coverage_minus=30	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_169__1__1__Xen14_193__444__-1__-24__AATACGGTTCTGACGAGCCGCTTA__150__150__0__0	max_left=122	max_left_minus=122	max_left_plus=122	max_min_left=62	max_min_left_minus=62	max_min_left_plus=59	max_min_right=59	max_min_right_minus=47	max_min_right_plus=59	max_pos_hash_score=248	max_right=121	max_right_minus=117	max_right_plus=121	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.30	new_junction_read_count=64	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58	unique_read_sequence=AATACGGTTCTGACGAGCCGCTTA
JC	1029	.	Xen14_169	1	1	Xen14_82	11932	-1	0	alignment_overlap=51	coverage_minus=44	coverage_plus=55	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=97	key=Xen14_169__1__1__Xen14_82__11983__-1__51____150__150__0__0	max_left=97	max_left_minus=97	max_left_plus=96	max_min_left=46	max_min_left_minus=44	max_min_left_plus=46	max_min_right=47	max_min_right_minus=44	max_min_right_plus=47	max_pos_hash_score=194	max_right=97	max_right_minus=97	max_right_plus=96	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.97	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=51	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=97	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	1030	.	Xen14_17	49461	1	Xen14_17	49505	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.679e-02	junction_possible_overlap_registers=145	key=Xen14_17__49461__1__Xen14_17__49502__1__3____150__150__0__0	max_left=49	max_left_minus=49	max_left_plus=7	max_min_left=49	max_min_left_minus=49	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=290	max_right=137	max_right_minus=104	max_right_plus=137	neg_log10_pos_hash_p_value=21.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=1.679e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=179	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=176	side_2_redundant=0	total_non_overlap_reads=3
JC	1031	.	Xen14_171	1	1	Xen14_64	2419	-1	0	alignment_overlap=1	coverage_minus=43	coverage_plus=39	flanking_left=150	flanking_right=150	frequency=6.273e-01	junction_possible_overlap_registers=147	key=Xen14_171__1__1__Xen14_64__2420__-1__1____150__150__0__0	max_left=148	max_left_minus=147	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=61	max_pos_hash_score=294	max_right=62	max_right_minus=62	max_right_plus=61	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.76	new_junction_read_count=85	polymorphism_frequency=6.273e-01	pos_hash_score=45	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=82
JC	1032	.	Xen14_172	1	1	Xen14_64	2419	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=3.804e-01	junction_possible_overlap_registers=147	key=Xen14_172__1__1__Xen14_64__2420__-1__1____150__150__0__0	max_left=146	max_left_minus=138	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=61	max_pos_hash_score=294	max_right=68	max_right_minus=68	max_right_plus=61	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.46	new_junction_read_count=31	polymorphism_frequency=3.804e-01	pos_hash_score=21	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=28
JC	1033	.	Xen14_174	1	1	Xen14_96	5121	1	-29	alignment_overlap=-29	coverage_minus=31	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=6.629e-01	junction_possible_overlap_registers=119	key=Xen14_174__1__1__Xen14_96__5121__1__-29__TTGCCCGGCCAGTACGATGACGTAGTACC__150__150__0__0	max_left=120	max_left_minus=120	max_left_plus=80	max_min_left=53	max_min_left_minus=49	max_min_left_plus=53	max_min_right=51	max_min_right_minus=51	max_min_right_plus=48	max_pos_hash_score=238	max_right=120	max_right_minus=106	max_right_plus=120	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.78	new_junction_read_count=83	polymorphism_frequency=6.629e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=105	side_2_redundant=0	total_non_overlap_reads=55	unique_read_sequence=TTGCCCGGCCAGTACGATGACGTAGTACC
JC	1034	.	Xen14_174	35	-1	Xen14_96	5128	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=11	flanking_left=35	flanking_right=150	frequency=2.519e-01	junction_possible_overlap_registers=148	key=Xen14_174__35__-1__Xen14_96__5128__-1__0____35__150__1__0	max_left=35	max_left_minus=33	max_left_plus=35	max_min_left=35	max_min_left_minus=33	max_min_left_plus=35	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.26	new_junction_read_count=34	polymorphism_frequency=2.519e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=20
JC	1035	.	Xen14_175	560	-1	Xen14_183	245	1	0	alignment_overlap=10	coverage_minus=25	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=4.192e-01	junction_possible_overlap_registers=138	key=Xen14_175__560__-1__Xen14_183__235__1__10____150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=134	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=43	max_pos_hash_score=276	max_right=43	max_right_minus=43	max_right_plus=43	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.43	new_junction_read_count=48	polymorphism_frequency=4.192e-01	pos_hash_score=25	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=38
JC	1036	.	Xen14_176	1	1	Xen14_88	2196	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=2.955e-01	junction_possible_overlap_registers=147	key=Xen14_176__1__1__Xen14_88__2197__-1__1____150__150__0__0	max_left=146	max_left_minus=144	max_left_plus=146	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=5	max_pos_hash_score=294	max_right=7	max_right_minus=7	max_right_plus=5	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.10	new_junction_read_count=13	polymorphism_frequency=2.955e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=11
JC	1037	.	Xen14_177	1	1	Xen14_96	5308	-1	-24	alignment_overlap=-24	coverage_minus=27	coverage_plus=36	flanking_left=150	flanking_right=150	frequency=6.988e-01	junction_possible_overlap_registers=124	key=Xen14_177__1__1__Xen14_96__5308__-1__-24__CATTTTTCAGATGGTGGAAAGAAC__150__150__0__0	max_left=113	max_left_minus=113	max_left_plus=111	max_min_left=62	max_min_left_minus=53	max_min_left_plus=62	max_min_right=60	max_min_right_minus=60	max_min_right_plus=60	max_pos_hash_score=248	max_right=93	max_right_minus=93	max_right_plus=92	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.60	new_junction_read_count=69	polymorphism_frequency=6.988e-01	pos_hash_score=46	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=63	unique_read_sequence=CATTTTTCAGATGGTGGAAAGAAC
JC	1038	.	Xen14_177	1	1	Xen14_96	5308	-1	-24	alignment_overlap=-24	coverage_minus=26	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=6.531e-01	junction_possible_overlap_registers=124	key=Xen14_177__1__1__Xen14_96__5308__-1__-24__TATTTTTCAGATGGTGGAAAGAAC__150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=113	max_min_left=62	max_min_left_minus=61	max_min_left_plus=62	max_min_right=62	max_min_right_minus=60	max_min_right_plus=62	max_pos_hash_score=248	max_right=93	max_right_minus=93	max_right_plus=92	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.48	new_junction_read_count=56	polymorphism_frequency=6.531e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=50	unique_read_sequence=TATTTTTCAGATGGTGGAAAGAAC
JC	1039	.	Xen14_177	549	-1	Xen14_96	5541	1	-57	alignment_overlap=-57	coverage_minus=19	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=6.937e-01	junction_possible_overlap_registers=91	key=Xen14_177__549__-1__Xen14_96__5541__1__-57__ACTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC__150__150__0__0	max_left=92	max_left_minus=92	max_left_plus=92	max_min_left=45	max_min_left_minus=45	max_min_left_plus=43	max_min_right=36	max_min_right_minus=28	max_min_right_plus=36	max_pos_hash_score=182	max_right=87	max_right_minus=87	max_right_plus=76	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.46	new_junction_read_count=39	polymorphism_frequency=6.937e-01	pos_hash_score=26	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=36	unique_read_sequence=ACTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC
JC	1040	.	Xen14_177	549	-1	Xen14_96	5541	1	-57	alignment_overlap=-57	coverage_minus=9	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=6.016e-01	junction_possible_overlap_registers=91	key=Xen14_177__549__-1__Xen14_96__5541__1__-57__GCTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC__150__150__0__0	max_left=83	max_left_minus=77	max_left_plus=83	max_min_left=43	max_min_left_minus=30	max_min_left_plus=43	max_min_right=46	max_min_right_minus=46	max_min_right_plus=45	max_pos_hash_score=182	max_right=89	max_right_minus=86	max_right_plus=89	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.31	new_junction_read_count=26	polymorphism_frequency=6.016e-01	pos_hash_score=23	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=26	unique_read_sequence=GCTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC
JC	1041	.	Xen14_180	75	-1	Xen14_202	280	-1	0	alignment_overlap=0	coverage_minus=45	coverage_plus=51	flanking_left=75	flanking_right=150	frequency=9.684e-02	junction_possible_overlap_registers=148	key=Xen14_180__75__-1__Xen14_202__280__-1__0____75__150__1__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=74	max_min_left_minus=74	max_min_left_plus=73	max_min_right=75	max_min_right_minus=75	max_min_right_plus=54	max_pos_hash_score=296	max_right=146	max_right_minus=146	max_right_plus=144	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.24	new_junction_read_count=101	polymorphism_frequency=9.684e-02	pos_hash_score=59	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.34	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=942	side_2_redundant=0	total_non_overlap_reads=96
JC	1042	.	Xen14_180	75	-1	Xen14_206	327	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=75	flanking_right=77	frequency=2.402e-02	junction_possible_overlap_registers=148	key=Xen14_180__75__-1__Xen14_206__327__1__0____75__77__1__0	max_left=75	max_left_minus=75	max_left_plus=0	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=0	neg_log10_pos_hash_p_value=24.4	new_junction_coverage=0.02	new_junction_read_count=16	polymorphism_frequency=2.402e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=650	side_2_redundant=0	total_non_overlap_reads=4
JC	1043	.	Xen14_180	75	-1	Xen14_62	81	-1	-39	alignment_overlap=-39	coverage_minus=5	coverage_plus=2	flanking_left=75	flanking_right=81	frequency=4.452e-01	junction_possible_overlap_registers=109	key=Xen14_180__75__-1__Xen14_62__81__-1__-39__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC__75__81__1__0	max_left=75	max_left_minus=30	max_left_plus=75	max_min_left=30	max_min_left_minus=30	max_min_left_plus=27	max_min_right=36	max_min_right_minus=0	max_min_right_plus=36	max_pos_hash_score=218	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.16	new_junction_read_count=13	polymorphism_frequency=4.452e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC
JC	1044	.	Xen14_180	75	-1	Xen14_68	16309	1	-40	alignment_overlap=-40	coverage_minus=20	coverage_plus=20	flanking_left=75	flanking_right=74	frequency=NA	junction_possible_overlap_registers=108	key=Xen14_180__75__-1__Xen14_68__16309__1__-40__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC__75__74__1__1	max_left=75	max_left_minus=74	max_left_plus=75	max_min_left=54	max_min_left_minus=54	max_min_left_plus=53	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=216	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.42	new_junction_read_count=50	polymorphism_frequency=NA	pos_hash_score=30	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC
JC	1045	.	Xen14_180	75	-1	Xen14_78	12478	1	-38	alignment_overlap=-38	coverage_minus=5	coverage_plus=1	flanking_left=75	flanking_right=82	frequency=1.612e-01	junction_possible_overlap_registers=110	key=Xen14_180__75__-1__Xen14_78__12478__1__-38__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG__75__82__1__0	max_left=30	max_left_minus=30	max_left_plus=27	max_min_left=30	max_min_left_minus=30	max_min_left_plus=27	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=220	max_right=82	max_right_minus=82	max_right_plus=82	neg_log10_pos_hash_p_value=16.5	new_junction_coverage=0.10	new_junction_read_count=12	polymorphism_frequency=1.612e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG
JC	1046	.	Xen14_180	526	-1	Xen14_197	402	-1	0	alignment_overlap=31	coverage_minus=78	coverage_plus=73	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_180__526__-1__Xen14_197__433__-1__31____150__150__0__0	max_left=116	max_left_minus=116	max_left_plus=114	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=59	max_min_right_minus=59	max_min_right_plus=58	max_pos_hash_score=234	max_right=117	max_right_minus=116	max_right_plus=117	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.46	new_junction_read_count=151	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=151
JC	1047	.	Xen14_183	176	-1	Xen14_19	76848	1	-8	alignment_overlap=-8	coverage_minus=15	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=2.017e-01	junction_possible_overlap_registers=140	key=Xen14_183__176__-1__Xen14_19__76848__1__-8__CGACGTAA__150__150__0__0	max_left=23	max_left_minus=23	max_left_plus=22	max_min_left=23	max_min_left_minus=23	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=141	max_right_minus=141	max_right_plus=140	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.25	new_junction_read_count=30	polymorphism_frequency=2.017e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=30	unique_read_sequence=CGACGTAA
JC	1048	.	Xen14_183	235	1	Xen14_98	11	1	0	alignment_overlap=10	coverage_minus=10	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=4.922e-01	junction_possible_overlap_registers=138	key=Xen14_183__235__1__Xen14_98__1__1__10____150__150__0__0	max_left=52	max_left_minus=52	max_left_plus=43	max_min_left=52	max_min_left_minus=52	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=138	max_right_minus=135	max_right_plus=138	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.47	new_junction_read_count=61	polymorphism_frequency=4.922e-01	pos_hash_score=30	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41
JC	1049	.	Xen14_183	326	1	Xen14_27	333	-1	0	alignment_overlap=10	coverage_minus=9	coverage_plus=4	flanking_left=142	flanking_right=150	frequency=5.519e-02	junction_possible_overlap_registers=138	key=Xen14_183__326__1__Xen14_27__343__-1__10____142__150__0__0	max_left=47	max_left_minus=47	max_left_plus=28	max_min_left=47	max_min_left_minus=47	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=133	max_right_minus=122	max_right_plus=133	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.11	new_junction_read_count=13	polymorphism_frequency=5.519e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=132	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.64	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=322	side_2_redundant=0	total_non_overlap_reads=13
JC	1050	.	Xen14_183	477	-1	Xen14_75	12904	1	-11	alignment_overlap=-11	coverage_minus=28	coverage_plus=17	flanking_left=150	flanking_right=149	frequency=4.012e-01	junction_possible_overlap_registers=137	key=Xen14_183__477__-1__Xen14_75__12904__1__-11__GGTGCCGATCA__150__149__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=274	max_right=55	max_right_minus=54	max_right_plus=55	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.47	new_junction_read_count=49	polymorphism_frequency=4.012e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=158	side_2_redundant=0	total_non_overlap_reads=45	unique_read_sequence=GGTGCCGATCA
JC	1051	.	Xen14_184	473	-1	Xen14_34	53052	-1	0	alignment_overlap=32	coverage_minus=34	coverage_plus=51	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_34__53084__-1__32____150__150__0__0	max_left=72	max_left_minus=66	max_left_plus=72	max_min_left=56	max_min_left_minus=56	max_min_left_plus=52	max_min_right=56	max_min_right_minus=56	max_min_right_plus=56	max_pos_hash_score=232	max_right=115	max_right_minus=108	max_right_plus=115	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.19	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=50	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	1052	.	Xen14_184	473	-1	Xen14_58	24540	-1	0	alignment_overlap=32	coverage_minus=139	coverage_plus=167	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_58__24572__-1__32____150__150__0__0	max_left=116	max_left_minus=116	max_left_plus=116	max_min_left=58	max_min_left_minus=58	max_min_left_plus=57	max_min_right=57	max_min_right_minus=57	max_min_right_plus=53	max_pos_hash_score=232	max_right=117	max_right_minus=114	max_right_plus=117	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.68	new_junction_read_count=310	polymorphism_frequency=1.000e+00	pos_hash_score=123	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=306
JC	1053	.	Xen14_184	473	-1	Xen14_60	32	1	0	alignment_overlap=31	coverage_minus=22	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_184__473__-1__Xen14_60__1__1__31____150__150__0__0	max_left=71	max_left_minus=71	max_left_plus=71	max_min_left=57	max_min_left_minus=57	max_min_left_plus=51	max_min_right=57	max_min_right_minus=53	max_min_right_plus=57	max_pos_hash_score=234	max_right=111	max_right_minus=111	max_right_plus=100	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.09	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	1054	.	Xen14_184	473	-1	Xen14_76	33	1	0	alignment_overlap=32	coverage_minus=86	coverage_plus=100	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_76__1__1__32____150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=115	max_min_left=58	max_min_left_minus=56	max_min_left_plus=58	max_min_right=59	max_min_right_minus=57	max_min_right_plus=59	max_pos_hash_score=232	max_right=117	max_right_minus=115	max_right_plus=117	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.43	new_junction_read_count=190	polymorphism_frequency=1.000e+00	pos_hash_score=99	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=186
JC	1055	.	Xen14_188	458	-1	Xen14_45	36472	-1	-29	alignment_overlap=-29	coverage_minus=37	coverage_plus=59	flanking_left=150	flanking_right=150	frequency=6.168e-01	junction_possible_overlap_registers=119	key=Xen14_188__458__-1__Xen14_45__36472__-1__-29__CAGCTTCTGCAACAGAACCGGTGAGTCTT__150__150__0__0	max_left=114	max_left_minus=114	max_left_plus=112	max_min_left=60	max_min_left_minus=57	max_min_left_plus=60	max_min_right=58	max_min_right_minus=58	max_min_right_plus=54	max_pos_hash_score=238	max_right=120	max_right_minus=120	max_right_plus=118	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.55	new_junction_read_count=99	polymorphism_frequency=6.168e-01	pos_hash_score=61	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=153	side_2_redundant=0	total_non_overlap_reads=96	unique_read_sequence=CAGCTTCTGCAACAGAACCGGTGAGTCTT
JC	1056	.	Xen14_188	458	-1	Xen14_45	36472	-1	-29	alignment_overlap=-29	coverage_minus=26	coverage_plus=54	flanking_left=150	flanking_right=150	frequency=5.714e-01	junction_possible_overlap_registers=119	key=Xen14_188__458__-1__Xen14_45__36472__-1__-29__TAGCTTCTGCAACAGAACCGGTGAGTCTT__150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=55	max_min_left_minus=54	max_min_left_plus=55	max_min_right=60	max_min_right_minus=60	max_min_right_plus=60	max_pos_hash_score=238	max_right=116	max_right_minus=111	max_right_plus=116	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.46	new_junction_read_count=82	polymorphism_frequency=5.714e-01	pos_hash_score=56	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=153	side_2_redundant=0	total_non_overlap_reads=80	unique_read_sequence=TAGCTTCTGCAACAGAACCGGTGAGTCTT
JC	1057	.	Xen14_19	57504	1	Xen14_19	57818	1	0	alignment_overlap=9	coverage_minus=33	coverage_plus=47	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_19__57504__1__Xen14_19__57809__1__9____150__150__0__0	max_left=138	max_left_minus=136	max_left_plus=138	max_min_left=67	max_min_left_minus=67	max_min_left_plus=66	max_min_right=67	max_min_right_minus=58	max_min_right_plus=67	max_pos_hash_score=278	max_right=135	max_right_minus=135	max_right_plus=132	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.62	new_junction_read_count=82	polymorphism_frequency=9.181e-01	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=80
JC	1058	.	Xen14_19	57512	-1	Xen14_19	57808	-1	0	alignment_overlap=9	coverage_minus=46	coverage_plus=43	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_19__57512__-1__Xen14_19__57817__-1__9____150__150__0__0	max_left=138	max_left_minus=138	max_left_plus=134	max_min_left=64	max_min_left_minus=64	max_min_left_plus=56	max_min_right=70	max_min_right_minus=70	max_min_right_plus=70	max_pos_hash_score=278	max_right=141	max_right_minus=141	max_right_plus=138	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.73	new_junction_read_count=96	polymorphism_frequency=9.085e-01	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=89
JC	1059	.	Xen14_19	76848	1	Xen14_54	28019	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=3.224e-01	junction_possible_overlap_registers=148	key=Xen14_19__76848__1__Xen14_54__28019__-1__0____150__150__0__0	max_left=142	max_left_minus=142	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=50	max_min_right_plus=51	max_pos_hash_score=296	max_right=51	max_right_minus=50	max_right_plus=51	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.38	new_junction_read_count=59	polymorphism_frequency=3.224e-01	pos_hash_score=31	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=58
JC	1060	.	Xen14_191	447	-1	Xen14_202	21	1	0	alignment_overlap=20	coverage_minus=401	coverage_plus=337	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=128	key=Xen14_191__447__-1__Xen14_202__1__1__20____150__150__0__0	max_left=129	max_left_minus=129	max_left_plus=129	max_min_left=64	max_min_left_minus=64	max_min_left_plus=64	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=256	max_right=129	max_right_minus=129	max_right_plus=129	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=1.72	new_junction_read_count=838	polymorphism_frequency=1.000e+00	pos_hash_score=203	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=20	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=128	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=738
JC	1061	.	Xen14_192	1	1	Xen14_198	431	-1	-1	alignment_overlap=-1	coverage_minus=21	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_192__1__1__Xen14_198__431__-1__-1__A__150__150__0__0	max_left=144	max_left_minus=142	max_left_plus=144	max_min_left=65	max_min_left_minus=63	max_min_left_plus=65	max_min_right=70	max_min_right_minus=69	max_min_right_plus=70	max_pos_hash_score=294	max_right=146	max_right_minus=146	max_right_plus=146	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.46	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39	unique_read_sequence=A
JC	1062	.	Xen14_192	1	1	Xen14_198	431	-1	-1	alignment_overlap=-1	coverage_minus=27	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_192__1__1__Xen14_198__431__-1__-1__G__150__150__0__0	max_left=144	max_left_minus=136	max_left_plus=144	max_min_left=73	max_min_left_minus=66	max_min_left_plus=73	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=294	max_right=141	max_right_minus=141	max_right_plus=135	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.60	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51	unique_read_sequence=G
JC	1063	.	Xen14_193	444	-1	Xen14_82	11909	1	0	alignment_overlap=2	coverage_minus=14	coverage_plus=21	flanking_left=150	flanking_right=75	frequency=5.526e-01	junction_possible_overlap_registers=146	key=Xen14_193__444__-1__Xen14_82__11907__1__2____150__75__0__0	max_left=147	max_left_minus=147	max_left_plus=144	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=67	max_min_right_minus=67	max_min_right_plus=57	max_pos_hash_score=292	max_right=74	max_right_minus=67	max_right_plus=74	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.20	new_junction_read_count=42	polymorphism_frequency=5.526e-01	pos_hash_score=28	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=35
JC	1064	.	Xen14_193	444	-1	Xen14_85	5914	1	0	alignment_overlap=1	coverage_minus=25	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=4.184e-01	junction_possible_overlap_registers=147	key=Xen14_193__444__-1__Xen14_85__5913__1__1____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=145	max_min_left=72	max_min_left_minus=72	max_min_left_plus=67	max_min_right=67	max_min_right_minus=67	max_min_right_plus=57	max_pos_hash_score=294	max_right=108	max_right_minus=98	max_right_plus=108	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.26	new_junction_read_count=59	polymorphism_frequency=4.184e-01	pos_hash_score=43	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=164	side_2_redundant=0	total_non_overlap_reads=52
JC	1065	.	Xen14_194	305	-1	Xen14_25	73236	-1	0	alignment_overlap=4	coverage_minus=5	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=2.851e-01	junction_possible_overlap_registers=144	key=Xen14_194__305__-1__Xen14_25__73240__-1__4____150__150__0__0	max_left=33	max_left_minus=33	max_left_plus=29	max_min_left=33	max_min_left_minus=33	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=142	max_right_minus=142	max_right_plus=140	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.21	new_junction_read_count=13	polymorphism_frequency=2.851e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	1066	.	Xen14_20	1	1	Xen14_33	53189	-1	0	alignment_overlap=52	coverage_minus=30	coverage_plus=33	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=96	key=Xen14_20__1__1__Xen14_33__53241__-1__52____150__150__0__0	max_left=96	max_left_minus=95	max_left_plus=96	max_min_left=46	max_min_left_minus=36	max_min_left_plus=46	max_min_right=49	max_min_right_minus=47	max_min_right_plus=49	max_pos_hash_score=192	max_right=97	max_right_minus=97	max_right_plus=88	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=66	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=52	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=96	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=63
JC	1067	.	Xen14_20	75208	1	Xen14_54	41	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=14	flanking_left=150	flanking_right=41	frequency=4.337e-01	junction_possible_overlap_registers=148	key=Xen14_20__75208__1__Xen14_54__41__-1__0____150__41__0__1	max_left=149	max_left_minus=149	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=41	max_min_right_plus=39	max_pos_hash_score=296	max_right=41	max_right_minus=41	max_right_plus=39	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.78	new_junction_read_count=108	polymorphism_frequency=4.337e-01	pos_hash_score=29	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=47
JC	1068	.	Xen14_20	75208	1	Xen14_68	16331	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=18	flanking_left=150	flanking_right=52	frequency=2.295e-01	junction_possible_overlap_registers=148	key=Xen14_20__75208__1__Xen14_68__16331__1__0____150__52__0__1	max_left=148	max_left_minus=143	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=43	max_min_right_plus=52	max_pos_hash_score=296	max_right=52	max_right_minus=43	max_right_plus=52	neg_log10_pos_hash_p_value=5.3	new_junction_coverage=0.30	new_junction_read_count=42	polymorphism_frequency=2.295e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	1069	.	Xen14_200	1	1	Xen14_26	75	-1	-64	alignment_overlap=-64	coverage_minus=42	coverage_plus=44	flanking_left=150	flanking_right=75	frequency=1	junction_possible_overlap_registers=84	key=Xen14_200__1__1__Xen14_26__75__-1__-64__CGCAGTTTTTCTATCTGAGCCCGCAGATGTTCTATTTCCCGTTCATCTTCTTCGATCTTTTCTT__150__75__0__1	max_left=85	max_left_minus=83	max_left_plus=85	max_min_left=41	max_min_left_minus=34	max_min_left_plus=41	max_min_right=43	max_min_right_minus=43	max_min_right_plus=42	max_pos_hash_score=168	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.29	new_junction_read_count=95	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=86	unique_read_sequence=CGCAGTTTTTCTATCTGAGCCCGCAGATGTTCTATTTCCCGTTCATCTTCTTCGATCTTTTCTT
JC	1070	.	Xen14_202	21	1	Xen14_202	53	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.029e-02	junction_possible_overlap_registers=141	key=Xen14_202__21__1__Xen14_202__46__1__7____150__150__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=115	max_right_minus=115	max_right_plus=0	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=1.029e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.33	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=228	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=360	side_2_redundant=0	total_non_overlap_reads=3
JC	1071	.	Xen14_202	276	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=7	flanking_left=146	flanking_right=75	frequency=1.867e-02	junction_possible_overlap_registers=148	key=Xen14_202__276__1__Xen14_94__75__-1__0____146__75__0__1	max_left=96	max_left_minus=96	max_left_plus=93	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=75	max_min_right_minus=65	max_min_right_plus=75	max_pos_hash_score=296	max_right=75	max_right_minus=65	max_right_plus=75	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.05	new_junction_read_count=18	polymorphism_frequency=1.867e-02	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=946	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	1072	.	Xen14_202	280	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=6.200e-02	junction_possible_overlap_registers=148	key=Xen14_202__280__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=70	max_left_minus=64	max_left_plus=70	max_min_left=70	max_min_left_minus=64	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=109	max_right_minus=92	max_right_plus=109	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.08	new_junction_read_count=35	polymorphism_frequency=6.200e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=942	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=19
JC	1073	.	Xen14_204	1	1	Xen14_47	36190	1	-8	alignment_overlap=-8	coverage_minus=11	coverage_plus=11	flanking_left=150	flanking_right=85	frequency=4.360e-01	junction_possible_overlap_registers=140	key=Xen14_204__1__1__Xen14_47__36190__1__-8__ATTGCTGG__150__85__0__0	max_left=63	max_left_minus=59	max_left_plus=63	max_min_left=63	max_min_left_minus=59	max_min_left_plus=63	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=85	max_right_minus=85	max_right_plus=85	neg_log10_pos_hash_p_value=14.5	new_junction_coverage=0.24	new_junction_read_count=34	polymorphism_frequency=4.360e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=ATTGCTGG
JC	1074	.	Xen14_204	1	1	Xen14_90	74	-1	-9	alignment_overlap=-9	coverage_minus=55	coverage_plus=47	flanking_left=150	flanking_right=74	frequency=1	junction_possible_overlap_registers=139	key=Xen14_204__1__1__Xen14_90__74__-1__-9__ATTGCTGGG__150__74__0__1	max_left=138	max_left_minus=137	max_left_plus=138	max_min_left=70	max_min_left_minus=69	max_min_left_plus=70	max_min_right=70	max_min_right_minus=70	max_min_right_plus=70	max_pos_hash_score=278	max_right=74	max_right_minus=74	max_right_plus=71	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.83	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=59	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=102	unique_read_sequence=ATTGCTGGG
JC	1075	.	Xen14_206	327	1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=7	flanking_left=77	flanking_right=150	frequency=7.255e-02	junction_possible_overlap_registers=148	key=Xen14_206__327__1__Xen14_38__48182__1__0____77__150__0__0	max_left=71	max_left_minus=65	max_left_plus=71	max_min_left=71	max_min_left_minus=65	max_min_left_plus=71	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=118	max_right_minus=114	max_right_plus=118	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.05	new_junction_read_count=30	polymorphism_frequency=7.255e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=650	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=16
JC	1076	.	Xen14_206	332	-1	Xen14_94	74	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=6	flanking_left=150	flanking_right=74	frequency=3.070e-02	junction_possible_overlap_registers=147	key=Xen14_206__332__-1__Xen14_94__75__-1__1____150__74__0__1	max_left=97	max_left_minus=97	max_left_plus=86	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=72	max_min_right_minus=72	max_min_right_plus=71	max_pos_hash_score=294	max_right=74	max_right_minus=74	max_right_plus=71	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.03	new_junction_read_count=19	polymorphism_frequency=3.070e-02	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=604	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	1077	.	Xen14_21	75	-1	Xen14_93	7777	-1	-23	alignment_overlap=-23	coverage_minus=11	coverage_plus=9	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=125	key=Xen14_21__75__-1__Xen14_93__7777__-1__-23__AAATATGGCGGTGAGGGGGGGAT__75__150__1__0	max_left=75	max_left_minus=61	max_left_plus=75	max_min_left=61	max_min_left_minus=61	max_min_left_plus=54	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=250	max_right=126	max_right_minus=126	max_right_plus=124	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.35	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=AAATATGGCGGTGAGGGGGGGAT
JC	1078	.	Xen14_22	1	1	Xen14_38	18	-1	-19	alignment_overlap=-19	coverage_minus=8	coverage_plus=5	flanking_left=150	flanking_right=18	frequency=1	junction_possible_overlap_registers=129	key=Xen14_22__1__1__Xen14_38__18__-1__-19__GACACGGAACAACGGCAAA__150__18__0__0	max_left=129	max_left_minus=124	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=15	max_pos_hash_score=258	max_right=18	max_right_minus=18	max_right_plus=15	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.19	new_junction_read_count=25	polymorphism_frequency=8.270e-01	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=GACACGGAACAACGGCAAA
JC	1079	.	Xen14_22	1	1	Xen14_38	37	-1	0	alignment_overlap=40	coverage_minus=4	coverage_plus=9	flanking_left=150	flanking_right=37	frequency=5.652e-01	junction_possible_overlap_registers=108	key=Xen14_22__1__1__Xen14_38__77__-1__40____150__37__0__0	max_left=108	max_left_minus=101	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_pos_hash_score=216	max_right=17	max_right_minus=17	max_right_plus=17	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.12	new_junction_read_count=13	polymorphism_frequency=5.652e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=40	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.22	side_2_overlap=0	side_2_possible_overlap_registers=108	side_2_read_count=20	side_2_redundant=0	total_non_overlap_reads=13
JC	1080	.	Xen14_22	57541	-1	Xen14_22	57553	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=2.179e-02	junction_possible_overlap_registers=142	key=Xen14_22__57541__-1__Xen14_22__57559__-1__6____150__150__0__0	max_left=116	max_left_minus=0	max_left_plus=116	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=43	max_min_right_minus=0	max_min_right_plus=43	max_pos_hash_score=284	max_right=43	max_right_minus=0	max_right_plus=43	neg_log10_pos_hash_p_value=20.1	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.179e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=140	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=135	side_2_redundant=0	total_non_overlap_reads=3
JC	1081	.	Xen14_22	70428	1	Xen14_22	70456	1	0	alignment_overlap=7	coverage_minus=6	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=4.406e-02	junction_possible_overlap_registers=141	key=Xen14_22__70428__1__Xen14_22__70449__1__7____150__150__0__0	max_left=48	max_left_minus=48	max_left_plus=0	max_min_left=48	max_min_left_minus=48	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=18.4	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.406e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=6
JC	1082	.	Xen14_24	73364	1	Xen14_25	73236	-1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=3.286e-01	junction_possible_overlap_registers=144	key=Xen14_24__73364__1__Xen14_25__73240__-1__4____150__150__0__0	max_left=38	max_left_minus=38	max_left_plus=29	max_min_left=38	max_min_left_minus=38	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=142	max_right_minus=142	max_right_plus=140	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.21	new_junction_read_count=15	polymorphism_frequency=3.286e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	1083	.	Xen14_26	25667	1	Xen14_26	25701	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=2.195e-02	junction_possible_overlap_registers=138	key=Xen14_26__25667__1__Xen14_26__25691__1__10____150__150__0__0	max_left=46	max_left_minus=46	max_left_plus=0	max_min_left=46	max_min_left_minus=46	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=117	max_right_minus=117	max_right_plus=0	neg_log10_pos_hash_p_value=18.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.195e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=143	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=3
JC	1084	.	Xen14_27	343	-1	Xen14_60	18885	-1	0	alignment_overlap=10	coverage_minus=4	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=5.814e-02	junction_possible_overlap_registers=138	key=Xen14_27__343__-1__Xen14_60__18895__-1__10____150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=122	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=32	max_min_right_minus=28	max_min_right_plus=32	max_pos_hash_score=276	max_right=32	max_right_minus=28	max_right_plus=32	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.12	new_junction_read_count=12	polymorphism_frequency=5.814e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.52	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=329	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=12
JC	1085	.	Xen14_27	343	-1	Xen14_75	12761	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=1.260e-01	junction_possible_overlap_registers=146	key=Xen14_27__343__-1__Xen14_75__12759__1__2____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=130	max_min_left=8	max_min_left_minus=4	max_min_left_plus=8	max_min_right=47	max_min_right_minus=28	max_min_right_plus=47	max_pos_hash_score=292	max_right=144	max_right_minus=144	max_right_plus=141	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.30	new_junction_read_count=35	polymorphism_frequency=1.260e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.52	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=329	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.52	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=22
JC	1086	.	Xen14_27	62188	-1	Xen14_27	62196	1	-7	alignment_overlap=-7	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=4.963e-02	junction_possible_overlap_registers=141	key=Xen14_27__62188__-1__Xen14_27__62196__1__-7__CTAGACC__150__150__0__0	max_left=130	max_left_minus=56	max_left_plus=130	max_min_left=56	max_min_left_minus=56	max_min_left_plus=0	max_min_right=8	max_min_right_minus=0	max_min_right_plus=8	max_pos_hash_score=282	max_right=93	max_right_minus=93	max_right_plus=8	neg_log10_pos_hash_p_value=13.8	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=4.963e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CTAGACC
JC	1087	.	Xen14_27	69633	1	Xen14_27	69656	1	0	alignment_overlap=10	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=4.124e-02	junction_possible_overlap_registers=138	key=Xen14_27__69633__1__Xen14_27__69646__1__10____150__150__0__0	max_left=85	max_left_minus=85	max_left_plus=0	max_min_left=57	max_min_left_minus=57	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=276	max_right=126	max_right_minus=126	max_right_plus=0	neg_log10_pos_hash_p_value=13.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.124e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=4
JC	1088	.	Xen14_29	59	-1	Xen14_96	3984	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=3	flanking_left=59	flanking_right=150	frequency=1.440e-01	junction_possible_overlap_registers=148	key=Xen14_29__59__-1__Xen14_96__3984__-1__0____59__150__1__0	max_left=37	max_left_minus=37	max_left_plus=28	max_min_left=37	max_min_left_minus=37	max_min_left_plus=28	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=147	max_right_minus=145	max_right_plus=147	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.19	new_junction_read_count=18	polymorphism_frequency=1.440e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=13
JC	1089	.	Xen14_3	102086	-1	Xen14_3	102120	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=4.645e-02	junction_possible_overlap_registers=145	key=Xen14_3__102086__-1__Xen14_3__102123__-1__3____150__150__0__0	max_left=109	max_left_minus=0	max_left_plus=109	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=39	max_min_right_minus=0	max_min_right_plus=39	max_pos_hash_score=290	max_right=39	max_right_minus=0	max_right_plus=39	neg_log10_pos_hash_p_value=19.1	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.645e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=6
JC	1090	.	Xen14_3	166144	1	Xen14_9	110	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=110	frequency=4.396e-02	junction_possible_overlap_registers=145	key=Xen14_3__166144__1__Xen14_9__110__-1__-3__TAG__150__110__0__0	max_left=126	max_left_minus=79	max_left_plus=126	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=37	max_min_right_minus=30	max_min_right_plus=37	max_pos_hash_score=290	max_right=37	max_right_minus=30	max_right_plus=37	neg_log10_pos_hash_p_value=17.6	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=4.396e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=TAG
JC	1091	.	Xen14_31	58819	-1	Xen14_78	166	1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.603e-01	junction_possible_overlap_registers=147	key=Xen14_31__58819__-1__Xen14_78__165__1__1____150__150__0__0	max_left=145	max_left_minus=144	max_left_plus=145	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=34	max_min_right_minus=34	max_min_right_plus=18	max_pos_hash_score=294	max_right=34	max_right_minus=34	max_right_plus=18	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.11	new_junction_read_count=19	polymorphism_frequency=1.603e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=199	side_2_redundant=0	total_non_overlap_reads=19
JC	1092	.	Xen14_33	1	1	Xen14_33	77	-1	-48	alignment_overlap=-48	coverage_minus=11	coverage_plus=8	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=100	key=Xen14_33__1__1__Xen14_33__77__-1__-48__ATATTCATCAGATTTATTAATTTGCTTTATGAATAACTTAAAGAACAT__150__77__0__1	max_left=90	max_left_minus=75	max_left_plus=90	max_min_left=49	max_min_left_minus=32	max_min_left_plus=49	max_min_right=51	max_min_right_minus=51	max_min_right_plus=45	max_pos_hash_score=200	max_right=70	max_right_minus=70	max_right_plus=66	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.32	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19	unique_read_sequence=ATATTCATCAGATTTATTAATTTGCTTTATGAATAACTTAAAGAACAT
JC	1093	.	Xen14_35	4641	1	Xen14_35	4675	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=2.118e-02	junction_possible_overlap_registers=142	key=Xen14_35__4641__1__Xen14_35__4669__1__6____150__150__0__0	max_left=40	max_left_minus=40	max_left_plus=29	max_min_left=40	max_min_left_minus=40	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=120	max_right_minus=104	max_right_plus=120	neg_log10_pos_hash_p_value=20.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.118e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=142	side_2_redundant=0	total_non_overlap_reads=3
JC	1094	.	Xen14_35	41813	-1	Xen14_35	41818	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.953e-02	junction_possible_overlap_registers=138	key=Xen14_35__41813__-1__Xen14_35__41828__-1__10____150__150__0__0	max_left=113	max_left_minus=0	max_left_plus=113	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=50	max_min_right_minus=0	max_min_right_plus=50	max_pos_hash_score=276	max_right=50	max_right_minus=0	max_right_plus=50	neg_log10_pos_hash_p_value=20.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=1.953e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=160	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=152	side_2_redundant=0	total_non_overlap_reads=3
JC	1095	.	Xen14_37	76	1	Xen14_37	244	-1	-31	alignment_overlap=-31	coverage_minus=10	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=3.529e-01	junction_possible_overlap_registers=117	key=Xen14_37__76__1__Xen14_37__244__-1__-31__AGCGTCGCATCCGGCAATTGCACCGCGCCAC__150__150__0__0	max_left=109	max_left_minus=107	max_left_plus=109	max_min_left=55	max_min_left_minus=53	max_min_left_plus=55	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=234	max_right=64	max_right_minus=62	max_right_plus=64	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.32	new_junction_read_count=25	polymorphism_frequency=3.529e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=AGCGTCGCATCCGGCAATTGCACCGCGCCAC
JC	1096	.	Xen14_37	76	1	Xen14_52	23350	1	-30	alignment_overlap=-30	coverage_minus=7	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=2.205e-01	junction_possible_overlap_registers=118	key=Xen14_37__76__1__Xen14_52__23350__1__-30__AGCGTCGCATCCGGCAATTGCACCGCGCCA__150__150__0__0	max_left=109	max_left_minus=107	max_left_plus=109	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=40	max_min_right_plus=41	max_pos_hash_score=236	max_right=41	max_right_minus=40	max_right_plus=41	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=2.205e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=AGCGTCGCATCCGGCAATTGCACCGCGCCA
JC	1097	.	Xen14_37	33995	1	Xen14_37	34016	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=5.516e-02	junction_possible_overlap_registers=140	key=Xen14_37__33995__1__Xen14_37__34008__1__8____150__150__0__0	max_left=40	max_left_minus=40	max_left_plus=19	max_min_left=40	max_min_left_minus=40	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=128	max_right_minus=123	max_right_plus=128	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.516e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	1098	.	Xen14_37	42730	1	Xen14_37	42805	-1	-33	alignment_overlap=-33	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.522e-01	junction_possible_overlap_registers=115	key=Xen14_37__42730__1__Xen14_37__42805__-1__-33__TCCTGAATGATTAAAGCAGCATAATCTCGCAAG__150__150__0__0	max_left=74	max_left_minus=74	max_left_plus=73	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=55	max_min_right_plus=57	max_pos_hash_score=230	max_right=57	max_right_minus=55	max_right_plus=57	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.12	new_junction_read_count=9	polymorphism_frequency=1.522e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TCCTGAATGATTAAAGCAGCATAATCTCGCAAG
JC	1099	.	Xen14_37	42730	1	Xen14_77	12590	1	-33	alignment_overlap=-33	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=80	frequency=1.665e-01	junction_possible_overlap_registers=115	key=Xen14_37__42730__1__Xen14_77__12590__1__-33__TCCTGAATGATTAAAGCAGCATAATCTCGCAAG__150__80__0__1	max_left=74	max_left_minus=74	max_left_plus=73	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=55	max_min_right_plus=57	max_pos_hash_score=230	max_right=57	max_right_minus=55	max_right_plus=57	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.12	new_junction_read_count=9	polymorphism_frequency=1.665e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9	unique_read_sequence=TCCTGAATGATTAAAGCAGCATAATCTCGCAAG
JC	1100	.	Xen14_37	42805	-1	Xen14_55	56	-1	-46	alignment_overlap=-46	coverage_minus=11	coverage_plus=8	flanking_left=150	flanking_right=56	frequency=3.470e-01	junction_possible_overlap_registers=102	key=Xen14_37__42805__-1__Xen14_55__56__-1__-46__ATACGGGTGTTACCTGAAAGATTTCTACTCGGAACCAATGTTTAAA__150__56__0__1	max_left=76	max_left_minus=64	max_left_plus=76	max_min_left=48	max_min_left_minus=48	max_min_left_plus=42	max_min_right=51	max_min_right_minus=51	max_min_right_plus=50	max_pos_hash_score=204	max_right=56	max_right_minus=56	max_right_plus=52	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.38	new_junction_read_count=26	polymorphism_frequency=3.470e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19	unique_read_sequence=ATACGGGTGTTACCTGAAAGATTTCTACTCGGAACCAATGTTTAAA
JC	1101	.	Xen14_37	42885	-1	Xen14_55	54	-1	-51	alignment_overlap=-51	coverage_minus=14	coverage_plus=15	flanking_left=150	flanking_right=54	frequency=5.468e-01	junction_possible_overlap_registers=97	key=Xen14_37__42885__-1__Xen14_55__54__-1__-51__GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG__150__54__0__1	max_left=96	max_left_minus=90	max_left_plus=96	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=48	max_min_right_minus=43	max_min_right_plus=48	max_pos_hash_score=194	max_right=54	max_right_minus=54	max_right_plus=50	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.52	new_junction_read_count=34	polymorphism_frequency=5.468e-01	pos_hash_score=22	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29	unique_read_sequence=GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG
JC	1102	.	Xen14_38	15257	1	Xen14_61	77	1	0	alignment_overlap=14	coverage_minus=26	coverage_plus=41	flanking_left=150	flanking_right=150	frequency=5.000e-01	junction_possible_overlap_registers=134	key=Xen14_38__15257__1__Xen14_61__63__1__14____150__150__0__0	max_left=135	max_left_minus=129	max_left_plus=135	max_min_left=65	max_min_left_minus=63	max_min_left_plus=65	max_min_right=68	max_min_right_minus=67	max_min_right_plus=68	max_pos_hash_score=268	max_right=127	max_right_minus=126	max_right_plus=127	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.62	new_junction_read_count=69	polymorphism_frequency=5.000e-01	pos_hash_score=48	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.30	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=67
JC	1103	.	Xen14_38	15257	1	Xen14_63	19808	-1	0	alignment_overlap=14	coverage_minus=27	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=4.180e-01	junction_possible_overlap_registers=134	key=Xen14_38__15257__1__Xen14_63__19822__-1__14____150__150__0__0	max_left=134	max_left_minus=129	max_left_plus=134	max_min_left=68	max_min_left_minus=27	max_min_left_plus=68	max_min_right=64	max_min_right_minus=63	max_min_right_plus=64	max_pos_hash_score=268	max_right=132	max_right_minus=122	max_right_plus=132	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.48	new_junction_read_count=51	polymorphism_frequency=4.180e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=49
JC	1104	.	Xen14_38	40527	1	Xen14_38	40558	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=4.359e-02	junction_possible_overlap_registers=137	key=Xen14_38__40527__1__Xen14_38__40547__1__11____150__150__0__0	max_left=49	max_left_minus=49	max_left_plus=0	max_min_left=49	max_min_left_minus=49	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=113	max_right_minus=113	max_right_plus=0	neg_log10_pos_hash_p_value=13.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.359e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=3
JC	1105	.	Xen14_38	48182	1	Xen14_62	81	-1	-39	alignment_overlap=-39	coverage_minus=9	coverage_plus=2	flanking_left=150	flanking_right=81	frequency=2.602e-01	junction_possible_overlap_registers=109	key=Xen14_38__48182__1__Xen14_62__81__-1__-39__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC__150__81__0__0	max_left=110	max_left_minus=109	max_left_plus=110	max_min_left=30	max_min_left_minus=30	max_min_left_plus=27	max_min_right=2	max_min_right_minus=2	max_min_right_plus=1	max_pos_hash_score=218	max_right=81	max_right_minus=81	max_right_plus=81	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.25	new_junction_read_count=18	polymorphism_frequency=2.602e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC
JC	1106	.	Xen14_38	48182	1	Xen14_68	16309	1	-40	alignment_overlap=-40	coverage_minus=23	coverage_plus=14	flanking_left=150	flanking_right=74	frequency=4.167e-01	junction_possible_overlap_registers=108	key=Xen14_38__48182__1__Xen14_68__16309__1__-40__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC__150__74__0__1	max_left=109	max_left_minus=109	max_left_plus=92	max_min_left=45	max_min_left_minus=45	max_min_left_plus=45	max_min_right=31	max_min_right_minus=31	max_min_right_plus=30	max_pos_hash_score=216	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.56	new_junction_read_count=61	polymorphism_frequency=4.167e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=37	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC
JC	1107	.	Xen14_38	48182	1	Xen14_78	12478	1	-38	alignment_overlap=-38	coverage_minus=9	coverage_plus=2	flanking_left=150	flanking_right=82	frequency=1.854e-01	junction_possible_overlap_registers=110	key=Xen14_38__48182__1__Xen14_78__12478__1__-38__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG__150__82__0__0	max_left=110	max_left_minus=109	max_left_plus=110	max_min_left=30	max_min_left_minus=30	max_min_left_plus=27	max_min_right=3	max_min_right_minus=3	max_min_right_plus=2	max_pos_hash_score=220	max_right=82	max_right_minus=82	max_right_plus=82	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.15	new_junction_read_count=17	polymorphism_frequency=1.854e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG
JC	1108	.	Xen14_41	1	1	Xen14_76	12864	-1	0	alignment_overlap=67	coverage_minus=26	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=81	key=Xen14_41__1__1__Xen14_76__12931__-1__67____150__150__0__0	max_left=80	max_left_minus=80	max_left_plus=74	max_min_left=40	max_min_left_minus=29	max_min_left_plus=40	max_min_right=38	max_min_right_minus=38	max_min_right_plus=34	max_pos_hash_score=162	max_right=82	max_right_minus=80	max_right_plus=82	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.99	new_junction_read_count=60	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=67	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=81	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=56
JC	1109	.	Xen14_43	37013	-1	Xen14_43	37210	-1	0	alignment_overlap=15	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=4.525e-02	junction_possible_overlap_registers=133	key=Xen14_43__37013__-1__Xen14_43__37225__-1__15____150__150__0__0	max_left=74	max_left_minus=74	max_left_plus=60	max_min_left=60	max_min_left_minus=53	max_min_left_plus=60	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=266	max_right=92	max_right_minus=78	max_right_plus=92	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.525e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=15	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=133	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=4
JC	1110	.	Xen14_43	37013	-1	Xen14_84	2028	1	-37	alignment_overlap=-37	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.723e-02	junction_possible_overlap_registers=111	key=Xen14_43__37013__-1__Xen14_84__2028__1__-37__CTTAGCCGGGCTGGCAGGGATGCAAGGGTACGCTTCG__150__150__0__0	max_left=89	max_left_minus=89	max_left_plus=75	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=41	max_min_right_plus=55	max_pos_hash_score=222	max_right=55	max_right_minus=41	max_right_plus=55	neg_log10_pos_hash_p_value=11.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.723e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=CTTAGCCGGGCTGGCAGGGATGCAAGGGTACGCTTCG
JC	1111	.	Xen14_43	37013	-1	Xen14_84	8977	1	-37	alignment_overlap=-37	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=6.723e-02	junction_possible_overlap_registers=111	key=Xen14_43__37013__-1__Xen14_84__8977__1__-37__CTTAGCCGGGCTGGCAGGGATGCAAGGGTACGCTTCG__150__150__0__0	max_left=89	max_left_minus=89	max_left_plus=75	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=55	max_min_right_minus=41	max_min_right_plus=55	max_pos_hash_score=222	max_right=109	max_right_minus=41	max_right_plus=109	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.723e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CTTAGCCGGGCTGGCAGGGATGCAAGGGTACGCTTCG
JC	1112	.	Xen14_43	37225	-1	Xen14_84	2198	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.554e-02	junction_possible_overlap_registers=130	key=Xen14_43__37225__-1__Xen14_84__2180__1__18____150__150__0__0	max_left=89	max_left_minus=89	max_left_plus=75	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=60	max_min_right_plus=53	max_pos_hash_score=260	max_right=60	max_right_minus=60	max_right_plus=53	neg_log10_pos_hash_p_value=13.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.554e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=18	side_1_possible_overlap_registers=148	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=130	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1113	.	Xen14_43	40889	-1	Xen14_43	41030	-1	0	alignment_overlap=12	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=4.668e-02	junction_possible_overlap_registers=136	key=Xen14_43__40889__-1__Xen14_43__41042__-1__12____150__150__0__0	max_left=86	max_left_minus=86	max_left_plus=55	max_min_left=68	max_min_left_minus=68	max_min_left_plus=55	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=272	max_right=137	max_right_minus=132	max_right_plus=137	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.09	new_junction_read_count=10	polymorphism_frequency=4.668e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.75	side_1_overlap=12	side_1_possible_overlap_registers=148	side_1_read_count=216	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.85	side_2_overlap=0	side_2_possible_overlap_registers=136	side_2_read_count=210	side_2_redundant=0	total_non_overlap_reads=9
JC	1114	.	Xen14_43	40921	-1	Xen14_43	41002	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.809e-02	junction_possible_overlap_registers=143	key=Xen14_43__40921__-1__Xen14_43__41007__-1__5____150__150__0__0	max_left=71	max_left_minus=71	max_left_plus=59	max_min_left=71	max_min_left_minus=71	max_min_left_plus=59	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=87	max_right_minus=76	max_right_plus=87	neg_log10_pos_hash_p_value=13.1	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=1.809e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.85	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=228	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.80	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=214	side_2_redundant=0	total_non_overlap_reads=4
JC	1115	.	Xen14_44	12083	-1	Xen14_44	12089	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=4.430e-02	junction_possible_overlap_registers=140	key=Xen14_44__12083__-1__Xen14_44__12097__-1__8____150__150__0__0	max_left=122	max_left_minus=0	max_left_plus=122	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=38	max_min_right_minus=0	max_min_right_plus=38	max_pos_hash_score=280	max_right=74	max_right_minus=0	max_right_plus=74	neg_log10_pos_hash_p_value=16.9	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=4.430e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	1116	.	Xen14_45	36425	1	Xen14_45	36450	1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=2.517e-02	junction_possible_overlap_registers=139	key=Xen14_45__36425__1__Xen14_45__36441__1__9____150__150__0__0	max_left=50	max_left_minus=50	max_left_plus=6	max_min_left=50	max_min_left_minus=50	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=116	max_right_minus=116	max_right_plus=111	neg_log10_pos_hash_p_value=18.7	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=2.517e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.36	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=226	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=175	side_2_redundant=0	total_non_overlap_reads=5
JC	1117	.	Xen14_45	36433	-1	Xen14_45	36440	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.559e-02	junction_possible_overlap_registers=139	key=Xen14_45__36433__-1__Xen14_45__36449__-1__9____150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=47	max_min_right_minus=7	max_min_right_plus=47	max_pos_hash_score=278	max_right=47	max_right_minus=7	max_right_plus=47	neg_log10_pos_hash_p_value=19.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=1.559e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=217	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=175	side_2_redundant=0	total_non_overlap_reads=3
JC	1118	.	Xen14_45	36968	-1	Xen14_79	487	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=1.090e-01	junction_possible_overlap_registers=148	key=Xen14_45__36968__-1__Xen14_79__487__-1__0____150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=115	max_min_left=8	max_min_left_minus=6	max_min_left_plus=8	max_min_right=44	max_min_right_minus=44	max_min_right_plus=40	max_pos_hash_score=296	max_right=149	max_right_minus=144	max_right_plus=149	neg_log10_pos_hash_p_value=12.9	new_junction_coverage=0.13	new_junction_read_count=20	polymorphism_frequency=1.090e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=165	side_2_redundant=0	total_non_overlap_reads=20
JC	1119	.	Xen14_46	12076	1	Xen14_46	12101	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=2.401e-02	junction_possible_overlap_registers=142	key=Xen14_46__12076__1__Xen14_46__12095__1__6____150__150__0__0	max_left=90	max_left_minus=90	max_left_plus=32	max_min_left=35	max_min_left_minus=35	max_min_left_plus=32	max_min_right=54	max_min_right_minus=54	max_min_right_plus=0	max_pos_hash_score=284	max_right=112	max_right_minus=94	max_right_plus=112	neg_log10_pos_hash_p_value=15.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.401e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=3
JC	1120	.	Xen14_47	13116	1	Xen14_47	13112	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=2.362e-02	junction_possible_overlap_registers=137	key=Xen14_47__13116__1__Xen14_47__13123__-1__11____150__150__0__0	max_left=98	max_left_minus=48	max_left_plus=98	max_min_left=48	max_min_left_minus=48	max_min_left_plus=44	max_min_right=41	max_min_right_minus=0	max_min_right_plus=41	max_pos_hash_score=274	max_right=95	max_right_minus=91	max_right_plus=95	neg_log10_pos_hash_p_value=18.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.362e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=134	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=3
JC	1121	.	Xen14_47	36191	1	Xen14_55	26715	-1	-11	alignment_overlap=-11	coverage_minus=2	coverage_plus=6	flanking_left=84	flanking_right=150	frequency=2.379e-01	junction_possible_overlap_registers=137	key=Xen14_47__36191__1__Xen14_55__26715__-1__-11__ATTACTGCTAC__84__150__0__0	max_left=84	max_left_minus=82	max_left_plus=84	max_min_left=34	max_min_left_minus=34	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=55	max_pos_hash_score=274	max_right=105	max_right_minus=105	max_right_plus=55	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.11	new_junction_read_count=13	polymorphism_frequency=2.379e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=ATTACTGCTAC
JC	1122	.	Xen14_48	34538	1	Xen14_48	34770	-1	0	alignment_overlap=36	coverage_minus=13	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=4.073e-01	junction_possible_overlap_registers=112	key=Xen14_48__34538__1__Xen14_48__34806__-1__36____150__150__0__0	max_left=37	max_left_minus=36	max_left_plus=37	max_min_left=37	max_min_left_minus=36	max_min_left_plus=37	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=224	max_right=111	max_right_minus=107	max_right_plus=111	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.34	new_junction_read_count=39	polymorphism_frequency=4.073e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=36	side_1_possible_overlap_registers=148	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=112	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	1123	.	Xen14_53	1	1	Xen14_56	161	-1	0	alignment_overlap=9	coverage_minus=34	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=4.393e-01	junction_possible_overlap_registers=139	key=Xen14_53__1__1__Xen14_56__170__-1__9____150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=64	max_min_right_minus=64	max_min_right_plus=61	max_pos_hash_score=278	max_right=64	max_right_minus=64	max_right_plus=61	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.45	new_junction_read_count=67	polymorphism_frequency=4.393e-01	pos_hash_score=47	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=171	side_2_redundant=0	total_non_overlap_reads=65
JC	1124	.	Xen14_53	2592	-1	Xen14_53	2616	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=2.640e-02	junction_possible_overlap_registers=142	key=Xen14_53__2592__-1__Xen14_53__2622__-1__6____150__150__0__0	max_left=137	max_left_minus=0	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=30	max_min_right_minus=0	max_min_right_plus=30	max_pos_hash_score=284	max_right=30	max_right_minus=0	max_right_plus=30	neg_log10_pos_hash_p_value=18.2	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.640e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=148	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=153	side_2_redundant=0	total_non_overlap_reads=4
JC	1125	.	Xen14_54	382	1	Xen14_54	404	1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=8.753e-02	junction_possible_overlap_registers=143	key=Xen14_54__382__1__Xen14_54__399__1__5____150__150__0__0	max_left=59	max_left_minus=51	max_left_plus=59	max_min_left=59	max_min_left_minus=51	max_min_left_plus=59	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=142	max_right_minus=128	max_right_plus=142	neg_log10_pos_hash_p_value=20.0	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=8.753e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.30	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.33	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=5
JC	1126	.	Xen14_55	1	1	Xen14_55	54	-1	-55	alignment_overlap=-55	coverage_minus=8	coverage_plus=25	flanking_left=150	flanking_right=54	frequency=1	junction_possible_overlap_registers=93	key=Xen14_55__1__1__Xen14_55__54__-1__-55__CTACCAACTGAGCTAACGACCCCTTGCGGGATTATGCTGCTTTAATCATTCAGGA__150__54__0__1	max_left=91	max_left_minus=89	max_left_plus=91	max_min_left=45	max_min_left_minus=44	max_min_left_plus=45	max_min_right=45	max_min_right_minus=38	max_min_right_plus=45	max_pos_hash_score=186	max_right=51	max_right_minus=51	max_right_plus=50	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.53	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=33	unique_read_sequence=CTACCAACTGAGCTAACGACCCCTTGCGGGATTATGCTGCTTTAATCATTCAGGA
JC	1127	.	Xen14_55	56	-1	Xen14_77	12590	1	-46	alignment_overlap=-46	coverage_minus=8	coverage_plus=11	flanking_left=56	flanking_right=80	frequency=NA	junction_possible_overlap_registers=102	key=Xen14_55__56__-1__Xen14_77__12590__1__-46__TTTAAACATTGGTTCCGAGTAGAAATCTTTCAGGTAACACCCGTAT__56__80__1__1	max_left=56	max_left_minus=52	max_left_plus=56	max_min_left=51	max_min_left_minus=50	max_min_left_plus=51	max_min_right=48	max_min_right_minus=42	max_min_right_plus=48	max_pos_hash_score=204	max_right=76	max_right_minus=76	max_right_plus=64	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.38	new_junction_read_count=26	polymorphism_frequency=NA	pos_hash_score=18	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19	unique_read_sequence=TTTAAACATTGGTTCCGAGTAGAAATCTTTCAGGTAACACCCGTAT
JC	1128	.	Xen14_55	26715	-1	Xen14_90	74	-1	-11	alignment_overlap=-11	coverage_minus=33	coverage_plus=20	flanking_left=150	flanking_right=74	frequency=1	junction_possible_overlap_registers=137	key=Xen14_55__26715__-1__Xen14_90__74__-1__-11__GTAGCAGTAAT__150__74__0__1	max_left=138	max_left_minus=138	max_left_plus=126	max_min_left=69	max_min_left_minus=64	max_min_left_plus=69	max_min_right=69	max_min_right_minus=69	max_min_right_plus=69	max_pos_hash_score=274	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.52	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=53	unique_read_sequence=GTAGCAGTAAT
JC	1129	.	Xen14_60	18873	-1	Xen14_75	12761	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.544e-01	junction_possible_overlap_registers=146	key=Xen14_60__18873__-1__Xen14_75__12759__1__2____150__150__0__0	max_left=8	max_left_minus=4	max_left_plus=8	max_min_left=8	max_min_left_minus=4	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=144	max_right_minus=144	max_right_plus=141	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.24	new_junction_read_count=22	polymorphism_frequency=1.544e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.52	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=9
JC	1130	.	Xen14_75	12759	1	Xen14_75	12775	1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.338e-01	junction_possible_overlap_registers=146	key=Xen14_75__12759__1__Xen14_75__12773__1__2____150__150__0__0	max_left=144	max_left_minus=141	max_left_plus=144	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=8	max_min_right_minus=8	max_min_right_plus=4	max_pos_hash_score=292	max_right=118	max_right_minus=118	max_right_plus=4	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.23	new_junction_read_count=24	polymorphism_frequency=1.338e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.50	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=161	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.44	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=152	side_2_redundant=0	total_non_overlap_reads=11
JC	1131	.	Xen14_75	12904	1	Xen14_75	12904	-1	-9	alignment_overlap=-9	coverage_minus=11	coverage_plus=42	flanking_left=149	flanking_right=150	frequency=3.311e-01	junction_possible_overlap_registers=139	key=Xen14_75__12904__1__Xen14_75__12904__-1__-9__TGATCGGCA__149__150__0__0	max_left=49	max_left_minus=39	max_left_plus=49	max_min_left=49	max_min_left_minus=39	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=140	max_right_minus=140	max_right_plus=135	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.72	new_junction_read_count=73	polymorphism_frequency=3.311e-01	pos_hash_score=37	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=158	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.45	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=156	side_2_redundant=0	total_non_overlap_reads=53	unique_read_sequence=TGATCGGCA
JC	1132	.	Xen14_77	12476	-1	Xen14_77	12590	1	-33	alignment_overlap=-33	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=80	frequency=1.886e-01	junction_possible_overlap_registers=115	key=Xen14_77__12476__-1__Xen14_77__12590__1__-33__TCCTGAATGATTAAAGCAGCATAATCTCGCAAG__150__80__0__1	max_left=74	max_left_minus=74	max_left_plus=73	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=55	max_min_right_plus=57	max_pos_hash_score=230	max_right=57	max_right_minus=55	max_right_plus=57	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.17	new_junction_read_count=13	polymorphism_frequency=1.886e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9	unique_read_sequence=TCCTGAATGATTAAAGCAGCATAATCTCGCAAG
JC	1133	.	Xen14_78	1	1	Xen14_78	77	-1	-64	alignment_overlap=-64	coverage_minus=21	coverage_plus=24	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=84	key=Xen14_78__1__1__Xen14_78__77__-1__-64__CGGGATGCCCCGGATGCCTGTCCACTTGTCGGTGGCGGCGGTGCCGGACGGGTTGGCTTAAAGT__150__77__0__1	max_left=85	max_left_minus=85	max_left_plus=84	max_min_left=37	max_min_left_minus=33	max_min_left_plus=37	max_min_right=42	max_min_right_minus=41	max_min_right_plus=42	max_pos_hash_score=168	max_right=55	max_right_minus=55	max_right_plus=54	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.43	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=45	unique_read_sequence=CGGGATGCCCCGGATGCCTGTCCACTTGTCGGTGGCGGCGGTGCCGGACGGGTTGGCTTAAAGT
JC	1134	.	Xen14_79	487	-1	Xen14_85	77	-1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=39	flanking_left=150	flanking_right=77	frequency=3.555e-01	junction_possible_overlap_registers=148	key=Xen14_79__487__-1__Xen14_85__77__-1__0____150__77__0__1	max_left=149	max_left_minus=149	max_left_plus=144	max_min_left=73	max_min_left_minus=70	max_min_left_plus=73	max_min_right=74	max_min_right_minus=71	max_min_right_plus=74	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.61	new_junction_read_count=91	polymorphism_frequency=3.555e-01	pos_hash_score=52	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	1135	.	Xen14_8	13989	1	Xen14_8	13985	-1	0	alignment_overlap=11	coverage_minus=9	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=7.360e-02	junction_possible_overlap_registers=137	key=Xen14_8__13989__1__Xen14_8__13996__-1__11____150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=85	max_min_left=67	max_min_left_minus=67	max_min_left_plus=7	max_min_right=54	max_min_right_minus=40	max_min_right_plus=54	max_pos_hash_score=274	max_right=132	max_right_minus=93	max_right_plus=132	neg_log10_pos_hash_p_value=15.1	new_junction_coverage=0.07	new_junction_read_count=11	polymorphism_frequency=7.360e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=149	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=11
JC	1136	.	Xen14_86	1	1	Xen14_96	6916	-1	-1	alignment_overlap=-1	coverage_minus=25	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_86__1__1__Xen14_96__6916__-1__-1__C__150__150__0__0	max_left=147	max_left_minus=147	max_left_plus=145	max_min_left=70	max_min_left_minus=70	max_min_left_plus=70	max_min_right=74	max_min_right_minus=60	max_min_right_plus=74	max_pos_hash_score=294	max_right=144	max_right_minus=144	max_right_plus=140	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.43	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=C
JC	1137	.	Xen14_86	1	1	Xen14_96	6916	-1	-1	alignment_overlap=-1	coverage_minus=41	coverage_plus=39	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_86__1__1__Xen14_96__6916__-1__-1__T__150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=73	max_min_left_minus=73	max_min_left_plus=70	max_min_right=74	max_min_right_minus=61	max_min_right_plus=74	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=133	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.77	new_junction_read_count=82	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80	unique_read_sequence=T
JC	1138	.	Xen14_9	77731	-1	Xen14_9	77736	-1	0	alignment_overlap=13	coverage_minus=2	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=5.587e-02	junction_possible_overlap_registers=135	key=Xen14_9__77731__-1__Xen14_9__77749__-1__13____150__150__0__0	max_left=120	max_left_minus=74	max_left_plus=120	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=32	max_min_right_minus=26	max_min_right_plus=32	max_pos_hash_score=270	max_right=32	max_right_minus=26	max_right_plus=32	neg_log10_pos_hash_p_value=15.5	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=5.587e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=13	side_1_possible_overlap_registers=148	side_1_read_count=130	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=135	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=7
JC	1139	.	Xen14_9	81490	-1	Xen14_9	81518	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=2.299e-02	junction_possible_overlap_registers=141	key=Xen14_9__81490__-1__Xen14_9__81525__-1__7____150__150__0__0	max_left=119	max_left_minus=0	max_left_plus=119	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=0	max_min_right_plus=41	max_pos_hash_score=282	max_right=41	max_right_minus=0	max_right_plus=41	neg_log10_pos_hash_p_value=18.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.299e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=3
JC	1140	.	Xen14_91	2349	1	Xen14_91	2433	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.929e-02	junction_possible_overlap_registers=143	key=Xen14_91__2349__1__Xen14_91__2428__1__5____150__150__0__0	max_left=89	max_left_minus=89	max_left_plus=79	max_min_left=43	max_min_left_minus=43	max_min_left_plus=2	max_min_right=58	max_min_right_minus=56	max_min_right_plus=58	max_pos_hash_score=286	max_right=143	max_right_minus=102	max_right_plus=143	neg_log10_pos_hash_p_value=13.1	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.929e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=4
UN	1141	.	Xen14_1	242556	242556
UN	1142	.	Xen14_10	1	1
UN	1143	.	Xen14_100	1	1
UN	1144	.	Xen14_100	5845	5846
UN	1145	.	Xen14_101	1	1
UN	1146	.	Xen14_101	5614	5615
UN	1147	.	Xen14_102	1	1
UN	1148	.	Xen14_103	1	1
UN	1149	.	Xen14_103	5307	5307
UN	1150	.	Xen14_104	1	1
UN	1151	.	Xen14_104	5019	5019
UN	1152	.	Xen14_104	5093	5096
UN	1153	.	Xen14_105	1	1
UN	1154	.	Xen14_105	5061	5061
UN	1155	.	Xen14_106	1	1
UN	1156	.	Xen14_106	4995	4995
UN	1157	.	Xen14_107	1	1
UN	1158	.	Xen14_107	4932	4932
UN	1159	.	Xen14_108	1	6
UN	1160	.	Xen14_108	4816	4816
UN	1161	.	Xen14_109	1	4
UN	1162	.	Xen14_109	4613	4616
UN	1163	.	Xen14_11	1	1
UN	1164	.	Xen14_11	10	10
UN	1165	.	Xen14_11	106941	106943
UN	1166	.	Xen14_110	4576	4578
UN	1167	.	Xen14_111	1	1
UN	1168	.	Xen14_111	4562	4562
UN	1169	.	Xen14_112	1	14
UN	1170	.	Xen14_112	4409	4409
UN	1171	.	Xen14_112	4485	4486
UN	1172	.	Xen14_114	1	7
UN	1173	.	Xen14_114	10	10
UN	1174	.	Xen14_114	4039	4039
UN	1175	.	Xen14_115	1	5
UN	1176	.	Xen14_115	3633	3633
UN	1177	.	Xen14_116	1	1
UN	1178	.	Xen14_116	3428	3428
UN	1179	.	Xen14_117	1	13
UN	1180	.	Xen14_117	3427	3427
UN	1181	.	Xen14_118	3347	3355
UN	1182	.	Xen14_119	1	1
UN	1183	.	Xen14_12	1	2
UN	1184	.	Xen14_12	100892	100893
UN	1185	.	Xen14_12	100896	100898
UN	1186	.	Xen14_120	1	15
UN	1187	.	Xen14_120	3113	3114
UN	1188	.	Xen14_120	3120	3123
UN	1189	.	Xen14_121	3075	3076
UN	1190	.	Xen14_122	1	1
UN	1191	.	Xen14_122	2908	2908
UN	1192	.	Xen14_125	1	1
UN	1193	.	Xen14_125	78	78
UN	1194	.	Xen14_125	612	612
UN	1195	.	Xen14_125	628	628
UN	1196	.	Xen14_125	968	968
UN	1197	.	Xen14_125	1120	1120
UN	1198	.	Xen14_125	1741	1741
UN	1199	.	Xen14_125	2323	2339
UN	1200	.	Xen14_125	2379	2379
UN	1201	.	Xen14_125	2519	2519
UN	1202	.	Xen14_126	1	56
UN	1203	.	Xen14_126	58	58
UN	1204	.	Xen14_126	64	64
UN	1205	.	Xen14_126	2514	2515
UN	1206	.	Xen14_127	1	2
UN	1207	.	Xen14_127	2166	2166
UN	1208	.	Xen14_128	1	4
UN	1209	.	Xen14_128	2122	2122
UN	1210	.	Xen14_128	2124	2143
UN	1211	.	Xen14_129	1	1
UN	1212	.	Xen14_129	2049	2049
UN	1213	.	Xen14_13	1	5
UN	1214	.	Xen14_130	1	3
UN	1215	.	Xen14_130	1999	2000
UN	1216	.	Xen14_131	1	11
UN	1217	.	Xen14_131	905	905
UN	1218	.	Xen14_131	908	908
UN	1219	.	Xen14_131	1905	1905
UN	1220	.	Xen14_131	1922	1922
UN	1221	.	Xen14_132	1	1
UN	1222	.	Xen14_132	1805	1806
UN	1223	.	Xen14_133	1	1
UN	1224	.	Xen14_133	1721	1721
UN	1225	.	Xen14_134	1	17
UN	1226	.	Xen14_134	19	19
UN	1227	.	Xen14_134	648	648
UN	1228	.	Xen14_134	828	828
UN	1229	.	Xen14_134	839	839
UN	1230	.	Xen14_134	1646	1657
UN	1231	.	Xen14_135	1	1
UN	1232	.	Xen14_135	1632	1633
UN	1233	.	Xen14_136	1567	1567
UN	1234	.	Xen14_137	1	2
UN	1235	.	Xen14_137	1543	1544
UN	1236	.	Xen14_138	1	2
UN	1237	.	Xen14_138	1359	1361
UN	1238	.	Xen14_139	1	1
UN	1239	.	Xen14_139	1349	1349
UN	1240	.	Xen14_14	1	1
UN	1241	.	Xen14_14	89142	89144
UN	1242	.	Xen14_140	1	1
UN	1243	.	Xen14_140	1297	1298
UN	1244	.	Xen14_141	1292	1292
UN	1245	.	Xen14_142	1	1
UN	1246	.	Xen14_142	1274	1281
UN	1247	.	Xen14_143	1	1
UN	1248	.	Xen14_143	206	206
UN	1249	.	Xen14_143	1107	1107
UN	1250	.	Xen14_144	1	1
UN	1251	.	Xen14_144	1089	1091
UN	1252	.	Xen14_145	1062	1062
UN	1253	.	Xen14_146	1	2
UN	1254	.	Xen14_146	1045	1046
UN	1255	.	Xen14_147	1	1
UN	1256	.	Xen14_147	1007	1007
UN	1257	.	Xen14_148	1	13
UN	1258	.	Xen14_148	16	16
UN	1259	.	Xen14_15	1	6
UN	1260	.	Xen14_15	83866	83869
UN	1261	.	Xen14_150	1	2
UN	1262	.	Xen14_150	945	945
UN	1263	.	Xen14_151	938	938
UN	1264	.	Xen14_152	1	5
UN	1265	.	Xen14_152	934	934
UN	1266	.	Xen14_153	1	1
UN	1267	.	Xen14_153	929	929
UN	1268	.	Xen14_154	1	1
UN	1269	.	Xen14_154	920	920
UN	1270	.	Xen14_155	1	5
UN	1271	.	Xen14_155	898	900
UN	1272	.	Xen14_156	1	1
UN	1273	.	Xen14_156	860	862
UN	1274	.	Xen14_157	1	1
UN	1275	.	Xen14_157	857	857
UN	1276	.	Xen14_158	1	1
UN	1277	.	Xen14_158	799	799
UN	1278	.	Xen14_159	1	2
UN	1279	.	Xen14_159	78	78
UN	1280	.	Xen14_159	80	80
UN	1281	.	Xen14_159	91	91
UN	1282	.	Xen14_159	338	338
UN	1283	.	Xen14_159	582	582
UN	1284	.	Xen14_159	796	798
UN	1285	.	Xen14_16	1	1
UN	1286	.	Xen14_16	81941	81941
UN	1287	.	Xen14_161	1	2
UN	1288	.	Xen14_161	770	770
UN	1289	.	Xen14_162	1	1
UN	1290	.	Xen14_162	765	765
UN	1291	.	Xen14_163	1	1
UN	1292	.	Xen14_164	1	11
UN	1293	.	Xen14_164	738	746
UN	1294	.	Xen14_165	1	2
UN	1295	.	Xen14_166	1	1
UN	1296	.	Xen14_167	1	1
UN	1297	.	Xen14_169	626	626
UN	1298	.	Xen14_17	1	1
UN	1299	.	Xen14_17	80387	80390
UN	1300	.	Xen14_170	1	3
UN	1301	.	Xen14_170	614	619
UN	1302	.	Xen14_171	569	569
UN	1303	.	Xen14_172	546	569
UN	1304	.	Xen14_173	1	3
UN	1305	.	Xen14_173	564	564
UN	1306	.	Xen14_174	564	564
UN	1307	.	Xen14_175	1	3
UN	1308	.	Xen14_175	560	560
UN	1309	.	Xen14_176	1	2
UN	1310	.	Xen14_176	551	552
UN	1311	.	Xen14_178	1	1
UN	1312	.	Xen14_178	537	541
UN	1313	.	Xen14_179	1	1
UN	1314	.	Xen14_179	531	536
UN	1315	.	Xen14_18	1	1
UN	1316	.	Xen14_18	78780	78780
UN	1317	.	Xen14_180	1	2
UN	1318	.	Xen14_181	1	4
UN	1319	.	Xen14_181	511	511
UN	1320	.	Xen14_182	1	1
UN	1321	.	Xen14_182	478	478
UN	1322	.	Xen14_183	1	11
UN	1323	.	Xen14_184	1	1
UN	1324	.	Xen14_185	1	4
UN	1325	.	Xen14_185	470	471
UN	1326	.	Xen14_186	1	1
UN	1327	.	Xen14_186	465	465
UN	1328	.	Xen14_187	1	1
UN	1329	.	Xen14_188	1	1
UN	1330	.	Xen14_189	1	1
UN	1331	.	Xen14_189	448	453
UN	1332	.	Xen14_19	1	1
UN	1333	.	Xen14_19	77008	77008
UN	1334	.	Xen14_190	1	1
UN	1335	.	Xen14_190	448	448
UN	1336	.	Xen14_191	1	14
UN	1337	.	Xen14_191	444	447
UN	1338	.	Xen14_192	1	2
UN	1339	.	Xen14_192	445	445
UN	1340	.	Xen14_193	1	1
UN	1341	.	Xen14_193	444	444
UN	1342	.	Xen14_194	1	1
UN	1343	.	Xen14_194	438	442
UN	1344	.	Xen14_195	1	1
UN	1345	.	Xen14_195	441	441
UN	1346	.	Xen14_196	1	1
UN	1347	.	Xen14_196	436	436
UN	1348	.	Xen14_197	1	1
UN	1349	.	Xen14_197	428	433
UN	1350	.	Xen14_198	1	1
UN	1351	.	Xen14_198	431	431
UN	1352	.	Xen14_199	1	5
UN	1353	.	Xen14_199	428	428
UN	1354	.	Xen14_2	1	10
UN	1355	.	Xen14_2	185198	185210
UN	1356	.	Xen14_20	75563	75563
UN	1357	.	Xen14_200	421	423
UN	1358	.	Xen14_201	1	1
UN	1359	.	Xen14_201	421	421
UN	1360	.	Xen14_202	1	1
UN	1361	.	Xen14_202	421	421
UN	1362	.	Xen14_203	1	1
UN	1363	.	Xen14_203	416	416
UN	1364	.	Xen14_204	415	415
UN	1365	.	Xen14_205	1	3
UN	1366	.	Xen14_206	1	2
UN	1367	.	Xen14_21	1	11
UN	1368	.	Xen14_21	74825	74837
UN	1369	.	Xen14_22	1	1
UN	1370	.	Xen14_22	74456	74457
UN	1371	.	Xen14_23	1	2
UN	1372	.	Xen14_23	73971	73975
UN	1373	.	Xen14_24	1	5
UN	1374	.	Xen14_24	9	9
UN	1375	.	Xen14_24	12	12
UN	1376	.	Xen14_24	73664	73668
UN	1377	.	Xen14_25	1	7
UN	1378	.	Xen14_25	73240	73240
UN	1379	.	Xen14_26	1	1
UN	1380	.	Xen14_26	73209	73210
UN	1381	.	Xen14_27	1	1
UN	1382	.	Xen14_27	70661	70661
UN	1383	.	Xen14_27	71260	71260
UN	1384	.	Xen14_28	1	1
UN	1385	.	Xen14_28	64034	64034
UN	1386	.	Xen14_28	64041	64041
UN	1387	.	Xen14_28	64044	64054
UN	1388	.	Xen14_29	1	4
UN	1389	.	Xen14_29	62120	62120
UN	1390	.	Xen14_29	62122	62123
UN	1391	.	Xen14_3	1	1
UN	1392	.	Xen14_3	166305	166311
UN	1393	.	Xen14_30	1	5
UN	1394	.	Xen14_30	61650	61661
UN	1395	.	Xen14_31	1	5
UN	1396	.	Xen14_31	58818	58819
UN	1397	.	Xen14_32	1	8
UN	1398	.	Xen14_32	55381	55391
UN	1399	.	Xen14_33	1	1
UN	1400	.	Xen14_33	53234	53241
UN	1401	.	Xen14_34	1	1
UN	1402	.	Xen14_34	53079	53084
UN	1403	.	Xen14_35	1	1
UN	1404	.	Xen14_35	52845	52845
UN	1405	.	Xen14_36	1	1
UN	1406	.	Xen14_36	51934	51934
UN	1407	.	Xen14_37	1	2
UN	1408	.	Xen14_37	51424	51424
UN	1409	.	Xen14_38	1	9
UN	1410	.	Xen14_38	16025	16025
UN	1411	.	Xen14_38	48835	48836
UN	1412	.	Xen14_39	1	1
UN	1413	.	Xen14_39	1162	1165
UN	1414	.	Xen14_4	151516	151524
UN	1415	.	Xen14_40	1	1
UN	1416	.	Xen14_40	46787	46791
UN	1417	.	Xen14_41	41429	41431
UN	1418	.	Xen14_42	1	1
UN	1419	.	Xen14_42	41402	41403
UN	1420	.	Xen14_43	1	1
UN	1421	.	Xen14_43	24068	24084
UN	1422	.	Xen14_43	24087	24094
UN	1423	.	Xen14_43	36458	36460
UN	1424	.	Xen14_43	36462	36462
UN	1425	.	Xen14_43	36465	36465
UN	1426	.	Xen14_43	39246	39246
UN	1427	.	Xen14_43	39249	39249
UN	1428	.	Xen14_43	39336	39336
UN	1429	.	Xen14_43	39338	39338
UN	1430	.	Xen14_43	39342	39342
UN	1431	.	Xen14_43	39366	39366
UN	1432	.	Xen14_43	39899	39899
UN	1433	.	Xen14_43	41295	41296
UN	1434	.	Xen14_44	1	1
UN	1435	.	Xen14_44	40957	40957
UN	1436	.	Xen14_45	1	2
UN	1437	.	Xen14_46	1	1
UN	1438	.	Xen14_46	40336	40351
UN	1439	.	Xen14_47	1	1
UN	1440	.	Xen14_47	36274	36274
UN	1441	.	Xen14_48	1	1
UN	1442	.	Xen14_48	34805	34806
UN	1443	.	Xen14_49	1	8
UN	1444	.	Xen14_49	34102	34102
UN	1445	.	Xen14_5	1	4
UN	1446	.	Xen14_5	6	6
UN	1447	.	Xen14_5	9	10
UN	1448	.	Xen14_5	149062	149062
UN	1449	.	Xen14_50	1	2
UN	1450	.	Xen14_50	33368	33369
UN	1451	.	Xen14_51	1	1
UN	1452	.	Xen14_51	32311	32311
UN	1453	.	Xen14_52	1	1
UN	1454	.	Xen14_52	31365	31365
UN	1455	.	Xen14_53	1	3
UN	1456	.	Xen14_53	30293	30293
UN	1457	.	Xen14_54	1	10
UN	1458	.	Xen14_54	28579	28579
UN	1459	.	Xen14_56	1	6
UN	1460	.	Xen14_56	26426	26428
UN	1461	.	Xen14_57	1	10
UN	1462	.	Xen14_57	25328	25394
UN	1463	.	Xen14_57	26165	26165
UN	1464	.	Xen14_57	26242	26242
UN	1465	.	Xen14_58	1	2
UN	1466	.	Xen14_58	24567	24572
UN	1467	.	Xen14_59	1	2
UN	1468	.	Xen14_59	24177	24177
UN	1469	.	Xen14_6	1	3
UN	1470	.	Xen14_6	146759	146760
UN	1471	.	Xen14_60	1	10
UN	1472	.	Xen14_60	23186	23187
UN	1473	.	Xen14_61	1	1
UN	1474	.	Xen14_61	21382	21383
UN	1475	.	Xen14_62	1	16
UN	1476	.	Xen14_62	20210	20210
UN	1477	.	Xen14_63	1	2
UN	1478	.	Xen14_63	19884	19884
UN	1479	.	Xen14_64	1	1
UN	1480	.	Xen14_64	1364	1364
UN	1481	.	Xen14_64	1917	1917
UN	1482	.	Xen14_64	18261	18269
UN	1483	.	Xen14_65	1	1
UN	1484	.	Xen14_65	17080	17137
UN	1485	.	Xen14_65	17853	17856
UN	1486	.	Xen14_66	1	2
UN	1487	.	Xen14_66	17785	17785
UN	1488	.	Xen14_67	1	19
UN	1489	.	Xen14_67	17659	17659
UN	1490	.	Xen14_67	17663	17704
UN	1491	.	Xen14_68	1	1
UN	1492	.	Xen14_68	16369	16382
UN	1493	.	Xen14_69	1	4
UN	1494	.	Xen14_69	14625	14625
UN	1495	.	Xen14_7	1	1
UN	1496	.	Xen14_7	136497	136514
UN	1497	.	Xen14_70	1	29
UN	1498	.	Xen14_70	14220	14220
UN	1499	.	Xen14_70	14402	14402
UN	1500	.	Xen14_71	1	2
UN	1501	.	Xen14_71	14304	14304
UN	1502	.	Xen14_72	1	2
UN	1503	.	Xen14_72	13686	13687
UN	1504	.	Xen14_73	1	1
UN	1505	.	Xen14_73	13138	13160
UN	1506	.	Xen14_74	1	1
UN	1507	.	Xen14_74	13069	13069
UN	1508	.	Xen14_75	13052	13052
UN	1509	.	Xen14_76	1	8
UN	1510	.	Xen14_76	12924	12931
UN	1511	.	Xen14_77	1	2
UN	1512	.	Xen14_77	12667	12669
UN	1513	.	Xen14_78	1	1
UN	1514	.	Xen14_78	12557	12559
UN	1515	.	Xen14_79	1	1
UN	1516	.	Xen14_79	78	78
UN	1517	.	Xen14_79	12457	12553
UN	1518	.	Xen14_8	1	2
UN	1519	.	Xen14_8	132518	132518
UN	1520	.	Xen14_80	1	12
UN	1521	.	Xen14_80	12035	12035
UN	1522	.	Xen14_81	1	1
UN	1523	.	Xen14_81	3059	3060
UN	1524	.	Xen14_81	3062	3062
UN	1525	.	Xen14_81	3065	3065
UN	1526	.	Xen14_81	12020	12020
UN	1527	.	Xen14_82	11976	11983
UN	1528	.	Xen14_83	1	1
UN	1529	.	Xen14_83	11318	11356
UN	1530	.	Xen14_84	1	1
UN	1531	.	Xen14_84	2731	2742
UN	1532	.	Xen14_84	11356	11356
UN	1533	.	Xen14_85	1	2
UN	1534	.	Xen14_85	11188	11197
UN	1535	.	Xen14_86	563	563
UN	1536	.	Xen14_86	9216	9216
UN	1537	.	Xen14_86	9457	9457
UN	1538	.	Xen14_86	9472	9473
UN	1539	.	Xen14_86	9694	9694
UN	1540	.	Xen14_86	10953	10953
UN	1541	.	Xen14_87	1	1
UN	1542	.	Xen14_87	10348	10348
UN	1543	.	Xen14_88	1	1
UN	1544	.	Xen14_88	10249	10249
UN	1545	.	Xen14_88	10252	10259
UN	1546	.	Xen14_89	1	1
UN	1547	.	Xen14_89	10105	10105
UN	1548	.	Xen14_9	1	1
UN	1549	.	Xen14_9	129928	129929
UN	1550	.	Xen14_9	129932	129932
UN	1551	.	Xen14_9	129935	129936
UN	1552	.	Xen14_90	1	2
UN	1553	.	Xen14_90	9218	9218
UN	1554	.	Xen14_91	1	1
UN	1555	.	Xen14_91	8912	8913
UN	1556	.	Xen14_92	1	3
UN	1557	.	Xen14_92	7	7
UN	1558	.	Xen14_92	8230	8232
UN	1559	.	Xen14_93	1	2
UN	1560	.	Xen14_94	1	3
UN	1561	.	Xen14_94	7584	7584
UN	1562	.	Xen14_95	1	1
UN	1563	.	Xen14_95	7342	7342
UN	1564	.	Xen14_96	1	4
UN	1565	.	Xen14_96	4081	4081
UN	1566	.	Xen14_96	4649	4649
UN	1567	.	Xen14_96	4936	4936
UN	1568	.	Xen14_97	1	1
UN	1569	.	Xen14_97	6746	6746
UN	1570	.	Xen14_98	1	1
UN	1571	.	Xen14_98	6594	6594
UN	1572	.	Xen14_99	1	2