New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_168	= 629	0 (0.000)	31 (0.050)	24/210	1.4	100%	intergenic (‑111/–)	Xen14_04774/–	IS200/IS605 family transposase IS200C/–
	?	Xen14_62	44 =	0 (0.000)					intergenic (–/+117)	–/Xen14_04136	–/hypothetical protein

CATTGGGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_168/516‑629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggggttttaataactggctcaaagctgaaagctttccggaACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGCCCCGA  >  Xen14_62/44‑146                                                                                                                                                                                                                           CATTGGGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGA                                                                     <  1:361340/150‑1      GGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGC                                                                <  1:1114337/150‑1       GACCCCCTTTTTATTTCTTTTTTGACACTTGCAGTTGCCATACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGgacg                                                               <  1:1282946/150‑5            CCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGNGCACAAGAAGAGCTCGTAC                                                          <  1:3906811/150‑1            CCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGNGCACAAGAAGAGCTCGTAC                                                          <  1:3906808/150‑1            CCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTCCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTAC                                                          >  1:2159441/1‑150            CCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTCCCGGAACCCCCAACCTAGATGGGGGTTTTCTGTGCACAAGAAGA                                                                  >  1:2159442/1‑142             CTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTCGCTGGGGGTTTTCTGTGCACCAGAAGAGCCCGTAC                                                          >  1:2977698/1‑149               TTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAGGAAGAGCTCGTACGAA                                                       >  1:1552664/1‑150                             TGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAGGAAGAGCTCGTACGAAAGTACGAGCTTTTT                                         <  1:516119/150‑1                             TGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGA                                                                  <  1:2038609/125‑1                                 ttgaagacgaaCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCG                                     <  1:2240514/139‑1                                    TGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGTGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTAT                                  <  1:440193/150‑1                                     GCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCTGAAACCCCCAGCCCAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATA                                 >  1:540395/1‑150                                     GCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGATTTCTGGAACCCCCAGCCTAGATGGGGGTTTTCTGTGCACAAGGCGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATA                                 >  1:540397/1‑150                                      CAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATAT                                >  1:557156/1‑150                                           GCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCAT                           >  1:2244840/1‑150                                            CCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCACAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATA                          >  1:4130353/1‑150                                                     AAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGG                 <  1:79428/150‑1                                                     AAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGG                 <  1:79427/150‑1                                                     AAGGTGTGTTAACAAATAAAAAGGGGTTTTAATAACTGGCTTAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAGGAGCTCGTACGAAAGTACGAGCTTTGTGTCGTATATTGCATACACCGGGGG                 <  1:79425/150‑1                                                        GTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGAT              <  1:1395346/150‑1                                                         TGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATG             >  1:2234225/1‑150                                                         TGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGC                                              <  1:948362/117‑1                                                          GTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGG‑ATGAG           <  1:1767769/150‑1                                                          GTTTTAACAAATCAAAAGGGGTTTTAATAACTAGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGA            >  1:2785714/1‑150                                                            TTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGA          >  1:4106568/1‑150                                                              TAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAG        <  1:4417872/150‑1                                                               AACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACAAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGC       >  1:1457012/1‑150                                                                   AATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCATAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACAGGGGGGATGAGAAGCCCCG   >  1:3782092/1‑150                                                                    ATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGCCCCGA  >  1:1673317/1‑150                                                                                                                                                                                                                           CATTGGGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_168/516‑629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggggttttaataactggctcaaagctgaaagctttccggaACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGCCCCGA  >  Xen14_62/44‑146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.