New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_107	4859 =	NA (NA)	85 (0.740) +CC	48/292	0.6	37.9%	coding (263/333 nt)	torR_1	TorCAD operon transcriptional regulatory protein TorR
	?	Xen14_85	2720 =	141 (0.940)					coding (689/819 nt)	Xen14_04464	hypothetical protein

GCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_107/4710‑4932                                                                                                                                                      |                                                                                         gCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCg                                                                                          >  1:2917035/1‑150 (MQ=255) gCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCg                                                                                          <  1:4384694/150‑1 (MQ=255) gCGGGAAATTATGCAGAATCAGCCGGTGGATCTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCg                                                                                          >  1:534962/1‑150 (MQ=255)      aaaTTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGc                                                                                     >  1:954134/1‑150 (MQ=255)       aaTTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCg                                                                                    <  1:3025191/150‑1 (MQ=255)        aTTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGt                                                                                   >  1:529084/1‑150 (MQ=255)         ttATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTa                                                                                  <  1:3835488/150‑1 (MQ=255)            tGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAAc                                                                               >  1:838529/1‑150 (MQ=255)            tGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAACGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAAc                                                                               >  1:1811143/1‑150 (MQ=255)                 aaTCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAATTGAcc                                                                          <  1:2399472/150‑1 (MQ=255)                   tCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGAccgc                                                                        <  1:684716/150‑1 (MQ=255)                     aGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGAccgccg                                                                      <  1:3060016/150‑1 (MQ=255)                     aGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGAccgc                                                                        <  1:3537009/148‑1 (MQ=255)                         ggTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATg                                                                  <  1:3496162/150‑1 (MQ=255)                            ggATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAg                                                               >  1:3931727/1‑150 (MQ=255)                             gATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGc                                                              >  1:4904/1‑150 (MQ=255)                             gATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGc                                                              >  1:4908/1‑150 (MQ=255)                                 tGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATc                                                          <  1:1348896/150‑1 (MQ=255)                                 tGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATc                                                          <  1:1348894/150‑1 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     <  1:1013999/150‑1 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     >  1:2351454/1‑150 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     >  1:2351453/1‑150 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     >  1:2351452/1‑150 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     >  1:2351449/1‑150 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     >  1:2351446/1‑150 (MQ=255)                                      ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                     <  1:1015001/150‑1 (MQ=255)                                          tgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGaa                                                 >  1:2803229/1‑150 (MQ=255)                                          tgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGaa                                                 <  1:165582/150‑1 (MQ=255)                                             atatCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTg                                              <  1:1861708/150‑1 (MQ=255)                                               atCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGt                                            >  1:622617/1‑150 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:1248964/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:508076/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:1248963/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:1248959/150‑1 (MQ=255)                                                 cAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTaa                                          >  1:2199521/1‑150 (MQ=255)                                                  aaTTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGCATGCTCAACGGTGGGGATTATTGTGGTTACCTGCCGTATCGATCGGATTGACCATAAGCGTAAACTGACCGCCGCATGTAGCCATCAGACGAGAATTGGTacc                                         >  1:2582272/1‑148 (MQ=37)                                                  aaTTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAAc                                         <  1:2733342/150‑1 (MQ=255)                                                     ttGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTa                                      <  1:2775639/150‑1 (MQ=255)                                                                aaaTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGGCCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCt                           >  1:1280933/1‑150 (MQ=255)                                                                 aaTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTg                          <  1:339551/150‑1 (MQ=255)                                                                  aTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGa                         <  1:1644243/150‑1 (MQ=255)                                                                   tGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGat                        <  1:3335668/150‑1 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAATGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCACATCTTatat                      >  1:2966725/1‑150 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                      >  1:919722/1‑150 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                      >  1:919723/1‑150 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                      >  1:779737/1‑150 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                      >  1:919727/1‑150 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                      >  1:1623074/1‑150 (MQ=255)                                                                     gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                      >  1:1615250/1‑150 (MQ=255)                                                                      ccTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGG‑ATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAg                    >  1:766208/1‑150 (MQ=255)                                                                          aTGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACg                 <  1:648620/150‑1 (MQ=255)                                                                              tAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggaca             <  1:1637685/150‑5 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGat                        <  1:988678/136‑1 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatct          >  1:1299985/1‑143 (MQ=255)                                                                                  ccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatcta         <  1:2113412/150‑9 (MQ=255)                                                                                    gcgcCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatctaag       <  1:2861849/150‑11 (MQ=255)                                                                                       cccTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatctaagtat    <  1:1684635/150‑14 (MQ=255)                                                                                         cTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatctaagtatgg  >  1:1922737/1‑135 (MQ=18)                                                                                                                                                      |                                                                                         GCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_107/4710‑4932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.