breseq  version 0.38.1  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA Xen14_106 3,879 (T)10→11 coding (315/357 nt) Xen14_04646 ← hypothetical protein
RA Xen14_126 1,873 C→T P29P (CCC→CCT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,876 T→A G30G (GGT→GGA)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,885 G→T V33V (GTG→GTT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,888 C→A A34A (GCC→GCA)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,897 T→A A37A (GCT→GCA)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,942 A→G R52R (AGA→AGG)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,945 T→C L53L (CTT→CTC)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,951 A→G Q55Q (CAA→CAG)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,964 A→G I60V (ATA→GTT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,966 A→T I60V (ATA→GTT)  Xen14_04726 → hypothetical protein
RA Xen14_126 1,979 T→C S65P (TCG→CCG)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,023 G→A V79V (GTG→GTA)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,026 G→A E80E (GAG→GAA)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,043 C→A P86Q (CCG→CAG)  Xen14_04726 → hypothetical protein
RA Xen14_126 2,053 G→T P89P (CCG→CCT)  Xen14_04726 → hypothetical protein
JC Xen14_143 77 +GCTCTGC coding (230/279 nt) Xen14_04759 ← hypothetical protein
RA Xen14_143 136 G→A S57S (AGC→AGT)  Xen14_04759 ← hypothetical protein
RA Xen14_143 594 C→T intergenic (‑288/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 630 A→C intergenic (‑324/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 651 T→G intergenic (‑345/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 654 A→C intergenic (‑348/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 696 G→A intergenic (‑390/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 700 C→G intergenic (‑394/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 726 G→A intergenic (‑420/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 742 C→G intergenic (‑436/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 753 C→T intergenic (‑447/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 782 2 bp→GT intergenic (‑476/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 785 T→A intergenic (‑479/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 793 A→G intergenic (‑487/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 807 C→T intergenic (‑501/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 839 C→T intergenic (‑533/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 858 G→A intergenic (‑552/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 879 A→G intergenic (‑573/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 960 T→C intergenic (‑654/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 967 C→T intergenic (‑661/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 996 G→A intergenic (‑690/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_143 1,030 A→C intergenic (‑724/–) Xen14_04759 ← / – hypothetical protein/–
RA Xen14_17 79,736 T→C L178L (CTA→CTG)  Xen14_02064 ← IS4 family transposase ISEc13
RA Xen14_17 79,802 T→G G156G (GGA→GGC)  Xen14_02064 ← IS4 family transposase ISEc13
RA Xen14_17 80,371 G→A intergenic (‑102/–) Xen14_02064 ← / – IS4 family transposase ISEc13/–
RA Xen14_191 220 2 bp→GA intergenic (–/–) – / – –/–
RA Xen14_191 226 2 bp→GA intergenic (–/–) – / – –/–
RA Xen14_191 229 C→T intergenic (–/–) – / – –/–
RA Xen14_191 251 A→G intergenic (–/–) – / – –/–
RA Xen14_191 268 A→G intergenic (–/–) – / – –/–
RA Xen14_191 275 A→G intergenic (–/–) – / – –/–
RA Xen14_191 292 T→C intergenic (–/–) – / – –/–
RA Xen14_191 310 G→A intergenic (–/–) – / – –/–
RA Xen14_191 334 T→A intergenic (–/–) – / – –/–
RA Xen14_191 358 G→A intergenic (–/–) – / – –/–
RA Xen14_191 370 A→C intergenic (–/–) – / – –/–
RA Xen14_202 78 A→G intergenic (–/–) – / – –/–
RA Xen14_202 105 G→A intergenic (–/–) – / – –/–
RA Xen14_202 109 A→T intergenic (–/–) – / – –/–
RA Xen14_202 126 C→G intergenic (–/–) – / – –/–
RA Xen14_202 134 C→T intergenic (–/–) – / – –/–
RA Xen14_202 140 G→A intergenic (–/–) – / – –/–
RA Xen14_202 191 G→T intergenic (–/–) – / – –/–
RA Xen14_202 244 A→T intergenic (–/–) – / – –/–
RA Xen14_202 259 2 bp→GG intergenic (–/–) – / – –/–
RA Xen14_202 266 2 bp→TC intergenic (–/–) – / – –/–
RA Xen14_202 294 C→A intergenic (–/–) – / – –/–
RA Xen14_202 314 T→A intergenic (–/–) – / – –/–
RA Xen14_202 320 A→G intergenic (–/–) – / – –/–
RA Xen14_202 323 G→A intergenic (–/–) – / – –/–
RA Xen14_202 332 C→T intergenic (–/–) – / – –/–
RA Xen14_202 335 T→A intergenic (–/–) – / – –/–
RA Xen14_202 341 A→G intergenic (–/–) – / – –/–
RA Xen14_202 344 T→C intergenic (–/–) – / – –/–
RA Xen14_28 78 T→C intergenic (–/‑507) – / → gadC –/putative glutamate/gamma‑aminobutyrate antiporter
RA Xen14_38 48,371 G→T A155A (GCC→GCA)  Xen14_03355 ← IS21 family transposase IS100kyp
RA Xen14_43 24,069 A→C intergenic (‑200/‑398) traM ← / → Xen14_03555 Relaxosome protein TraM/hypothetical protein
RA Xen14_83 11,287 T→C intergenic (+24/–) Xen14_04442 → / – hypothetical protein/–

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ Xen14_126 1 174 174 NA [0] [94] 98 –/Xen14_04725 –/hypothetical protein
* * ÷ Xen14_197 403 433 31 109 [19] [0] NA –/– –/–
* * ÷ Xen14_22 74420 74457 38 335 [31] [0] NA ibpB/– Small heat shock protein IbpB/–
* * ÷ Xen14_25 73200 73240 41 29 [28] [0] NA Xen14_02638/– hypothetical protein/–
* * ÷ Xen14_31 1 26 26 NA [0] [30] 490 –/aspT_2 –/Aspartate/alanine antiporter
* * ÷ Xen14_31 58715 58819 105 109 [106] [0] NA Xen14_03021/– hypothetical protein/–
* * ÷ Xen14_33 53190 53241 52 103 [34] [0] NA Xen14_03104/– ISNCY family transposase ISRor2/–
* * ÷ Xen14_58 24541 24572 32 110 [34] [0] NA yjjW/– Putative glycyl‑radical enzyme activating enzyme YjjW/–
* * ÷ Xen14_60 1 31 31 NA [0] [19] 64 –/hisI –/Histidine biosynthesis bifunctional protein HisIE
* * ÷ Xen14_62 1 43 43 NA [0] [11] 38 –/Xen14_04136 –/hypothetical protein
* * ÷ Xen14_67 1 27 27 NA [0] [15] 62 –/gltJ –/Glutamate/aspartate import permease protein GltJ
* * ÷ Xen14_76 1 32 32 NA [0] [27] 202 –/norW –/Nitric oxide reductase FlRd‑NAD(+) reductase
* * ÷ Xen14_79 12253 12553 301 90 [88] [0] NA [yceD_4] [yceD_4]
* * ÷ Xen14_85 11156 11197 42 110 [41] [0] NA Xen14_04471/– hypothetical protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Xen14_1 1 =0 (0.000)25 (0.420)
+25 bp
17/246 2.3 100% intergenic (–/‑286) –/Xen14_00001 –/hypothetical protein
?Xen14_148 943 = NA (NA)intergenic (‑46/–) Xen14_04761/– hypothetical protein/–
* ? Xen14_1 121778 =48 (0.640)43 (0.070)
+48 bp
33/200 0.4 72.6% intergenic (+454/+8) clpA/Xen14_00117 ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser(gga)
?Xen14_168 1 = 0 (0.000)intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_1 = 2424791286 (17.050)344 (4.230) 102/286 0.0 21.7% coding (67/375 nt) Xen14_00217 IS3 family transposase ISLad1
?Xen14_186 394 = NA (NA)intergenic (‑103/–) Xen14_04784/– IS3 family transposase ISCfr6/–
* ? Xen14_1 242480 =NA (NA)370 (3.010) 115/296 0.0 74.9% coding (66/375 nt) Xen14_00217 IS3 family transposase ISLad1
?Xen14_105 4697 = 124 (0.730)coding (418/480 nt) Xen14_04638 IS3 family transposase ISCfr6
* ? Xen14_10 = 471565 (3.010)394 (2.780) 157/268 0.0 60.6% intergenic (–/+246) –/hemG –/Protoporphyrinogen IX dehydrogenase [menaquinone]
?Xen14_23 = 73961 0 (0.000)intergenic (+235/–) gmhB/– D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase/–
* ? Xen14_10 = 1072170 (0.000)348 (0.580)
+TGAGTTCGGCATGGGA
156/264 0.0 100% intergenic (‑122/–) Xen14_01449/– tRNA‑Asp(gtc)/–
?Xen14_123 = 2714 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_102 = 55520 (0.000)44 (0.050)
+AGGAGAGC
22/280 2.7 100% intergenic (‑46/–) pinR/– Serine recombinase PinR/–
?Xen14_141 1 = 0 (0.000)intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
* ? Xen14_105 3420 =145 (0.850)124 (1.160) 57/186 0.1 73.1% intergenic (+42/+32) hypF/Xen14_04636 Carbamoyltransferase HypF/IS3 family transposase IS1397
?Xen14_49 56 = 0 (0.000)intergenic (–/+131) –/gldA –/Glycerol dehydrogenase
* ? Xen14_105 = 3625726 (4.260)88 (1.040)
+70 bp
54/156 0.0 29.5% coding (46/219 nt) Xen14_04636 IS3 family transposase IS1397
?Xen14_115 3560 = 73 (0.480)coding (448/486 nt) Xen14_04696 hypothetical protein
* ? Xen14_105 3688 =454 (2.660)127 (1.010)
+G
42/294 1.0 31.3% intergenic (‑18/‑140) Xen14_04636/Xen14_04637 IS3 family transposase IS1397/hypothetical protein
?Xen14_12 = 188 107 (1.290)intergenic (–/+140) –/Xen14_01540 –/hypothetical protein
* ? Xen14_106 = 1601135 (1.130)94 (0.190) 42/296 2.4 58.2% coding (17/453 nt) Xen14_04641 IS256 family transposase IS1414
?Xen14_167 = 666 0 (0.000)intergenic (+42/–) Xen14_04773/– IS3 family transposase IS629/–
* ? Xen14_107 4859 =NA (NA)58 (0.540)
+CC
34/292 1.1 32.7% coding (263/333 nt) torR_1 TorCAD operon transcriptional regulatory protein TorR
?Xen14_85 2720 = 121 (0.810)coding (689/819 nt) Xen14_04464 hypothetical protein
* ? Xen14_108 98 =104 (0.920)48 (0.460)
+AAAGAAAAACTTTATG
32/264 2.6 34.6% intergenic (–/‑223) –/Xen14_04652 –/hypothetical protein
?Xen14_75 = 12952 99 (0.820)intergenic (+626/–) Xen14_04344/– hypothetical protein/–
* ? Xen14_108 128 =130 (1.150)159 (1.650) 79/262 0.0 23.8% intergenic (–/‑193) –/Xen14_04652 –/hypothetical protein
?Xen14_27 108 = 904 (9.770)intergenic (–/‑43) –/Xen14_02709 –/IS66 family transposase IS682
* ? Xen14_108 2632 =90 (0.800)58 (0.150) 36/284 2.4 57.3% coding (438/747 nt) Xen14_04656 IS3 family transposase ISCfr6
?Xen14_144 = 1085 0 (0.000)intergenic (+15/–) Xen14_04760/– IS110 family transposase ISEc21/–
* ? Xen14_110 1 =0 (0.000)32 (0.040) 20/246 1.5 100% intergenic (–/+87) –/ompW –/Outer membrane protein W
?Xen14_168 26 = 0 (0.000)intergenic (–/+34) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_113 1 =0 (0.000)178 (0.870)
+22 bp
97/252 0.2 100% intergenic (–/+326) –/Xen14_04684 –/tRNA‑Thr(ggt)
?Xen14_187 = 464 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_113 = 42750 (0.000)93 (0.760) 63/220 0.5 64.8% intergenic (‑176/–) murB/– UDP‑N‑acetylenolpyruvoylglucosamine reductase/–
?Xen14_3 166191 = 101 (0.920)intergenic (‑55/–) Xen14_00565/– tRNA‑Thr(ggt)/–
* ? Xen14_115 = 77NA (NA)73 (0.570) 35/296 2.4 51.8% intergenic (–/‑777) –/Xen14_04695 –/hypothetical protein
?Xen14_43 = 39557 68 (0.640)intergenic (‑21/+364) yhdJ_2/Xen14_03575 DNA adenine methyltransferase YhdJ/hypothetical protein
* ? Xen14_115 = 78NA (NA)97 (0.140)
+35 bp
54/226 1.1 100% intergenic (–/‑776) –/Xen14_04695 –/hypothetical protein
?Xen14_168 1 = 0 (0.000)intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_117 = 7743 (0.480)34 (0.420) 27/292 2.3 32.5% intergenic (–/+1345) –/nleF –/Effector protein NleF
?Xen14_7 136257 = 99 (1.320)coding (569/651 nt) zinT Metal‑binding protein ZinT
* ? Xen14_118 1 =0 (0.000)39 (0.090) 28/234 0.6 100% intergenic (–/+257) –/cbpM –/Chaperone modulatory protein CbpM
?Xen14_184 = 442 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_118 3283 =NA (NA)27 (0.330) 18/296 2.3 28.7% intergenic (+24/–) agp/– Glucose‑1‑phosphatase/–
?Xen14_43 39549 = 67 (0.630)intergenic (‑13/+372) yhdJ_2/Xen14_03575 DNA adenine methyltransferase YhdJ/hypothetical protein
* ? Xen14_119 = 73NA (NA)35 (0.040)
+AGCTAGGCTGGGGGG
27/266 2.9 100% intergenic (–/‑393) –/lipA –/Lipoyl synthase
?Xen14_168 = 629 0 (0.000)intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
* ? Xen14_119 = 32080 (0.000)54 (0.070) 34/246 1.5 100% intergenic (+81/–) crcB/– Putative fluoride ion transporter CrcB/–
?Xen14_168 26 = 0 (0.000)intergenic (–/+34) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
* ? Xen14_12 = 188107 (1.290)57 (1.340) 27/178 0.2 63.9% intergenic (–/+140) –/Xen14_01540 –/hypothetical protein
?Xen14_29 60 = 0 (0.000)intergenic (–/+63) –/trpA –/Tryptophan synthase alpha chain
* ? Xen14_12 = 188107 (1.290)54 (0.410) 28/296 2.5 33.5% intergenic (–/+140) –/Xen14_01540 –/hypothetical protein
?Xen14_68 16331 = NA (NA)intergenic (+51/–) rph/– Ribonuclease PH/–
* ? Xen14_12 = 18997 (1.170)74 (0.990) 41/294 0.6 43.4% intergenic (–/+139) –/Xen14_01540 –/hypothetical protein
?Xen14_21 = 59 NA (NA)intergenic (–/+18) –/add –/Adenosine deaminase
* ? Xen14_121 1 =0 (0.000)61 (0.130) 39/236 0.8 100% intergenic (–/+117) –/Xen14_04715 –/hypothetical protein
?Xen14_184 = 443 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_123 1 =0 (0.000)234 (0.280)
+34 bp
125/228 0.3 100% intergenic (–/–) –/– –/–
?Xen14_205 = 404 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_123 1 =0 (0.000)670 (0.800)
+34 bp
180/228 0.0 100% intergenic (–/–) –/– –/–
?Xen14_205 = 404 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_123 = 27140 (0.000)190 (0.320)
+CCCCATGCCGAACTC
110/266 0.0 100% intergenic (–/–) –/– –/–
?Xen14_9 1 = 0 (0.000)intergenic (–/‑145) –/Xen14_01228 –/hypothetical protein
* ? Xen14_124 1 =0 (0.000)104 (0.700)
+A
68/294 0.8 100% intergenic (–/‑29) –/Xen14_04720 –/hypothetical protein
?Xen14_165 = 691 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_124 1 =0 (0.000)98 (0.660)
+G
70/294 0.7 100% intergenic (–/‑29) –/Xen14_04720 –/hypothetical protein
?Xen14_165 = 691 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_124 = 25760 (0.000)35 (0.420)
+28 bp
23/240 1.6 100% intergenic (+232/–) sctC_2/– Type 3 secretion system secretin/–
?Xen14_21 74761 = NA (NA)intergenic (+146/–) hipA/– Serine/threonine‑protein kinase toxin HipA/–
* ? Xen14_126 = 2082203 (0.720)735 (1.590)
+47 bp
130/202 0.0 91.4% coding (296/420 nt) Xen14_04726 hypothetical protein
?Xen14_206 = 403 0 (0.000)intergenic (+94/–) Xen14_04788/– hypothetical protein/–
* ? Xen14_126 2440 =NA (NA)43 (0.430)
+65 bp
26/166 0.5 100% intergenic (+148/–) Xen14_04727/– hypothetical protein/–
?Xen14_99 = 6045 0 (0.000)intergenic (‑484/–) Xen14_04599/– hypothetical protein/–
* ? Xen14_13 = 983180 (0.000)37 (0.060) 25/218 2.1 100% intergenic (+227/–) gltI/– Glutamate/aspartate import solute‑binding protein/–
?Xen14_168 = 590 0 (0.000)intergenic (‑72/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
* ? Xen14_131 846 =36 (0.500)49 (0.440) 32/296 1.4 73.1% coding (93/573 nt) Xen14_04737 hypothetical protein
?Xen14_151 1 = 0 (0.000)intergenic (–/‑66) –/Xen14_04764 –/hypothetical protein
* ? Xen14_132 1586 =186 (0.980)76 (0.480) 43/296 2.8 29.0% intergenic (‑155/–) Xen14_04740/– IS3 family transposase IS2/–
?Xen14_90 = 74 NA (NA)coding (1/747 nt) yafV Omega‑amidase YafV
* ? Xen14_134 212 =91 (0.860)44 (0.460)
+GTATCAGTTAGCG
28/270 1.6 34.6% intergenic (–/+635) –/Xen14_04742 –/tRNA‑Arg(tct)
?Xen14_134 = 213 91 (0.860)intergenic (–/+634) –/Xen14_04742 –/tRNA‑Arg(tct)
* ? Xen14_134 = 69589 (0.840)34 (0.260) 19/296 2.9 27.6% intergenic (–/+152) –/Xen14_04742 –/tRNA‑Arg(tct)
?Xen14_162 691 = NA (NA)coding (388/390 nt) Xen14_04771 hypothetical protein
* ? Xen14_134 1002 =98 (0.930)51 (0.670)
+50 bp
27/196 1.0 47.7% intergenic (‑79/+19) Xen14_04742/Xen14_04743 tRNA‑Arg(tct)/tRNA‑Met(cat)
?Xen14_96 = 5905 71 (0.570)noncoding (59/77 nt) Xen14_04572 tRNA‑Arg(tcg)
* ? Xen14_136 1 =0 (0.000)91 (0.940) 45/218 0.4 100% intergenic (–/+298) –/intA_4 –/Prophage integrase IntA
?Xen14_170 = 580 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_136 = 15665 (0.040)749 (0.730)
+C
162/294 -0.0 99.7% intergenic (‑55/–) intA_6/– Prophage integrase IntA/–
?Xen14_141 1 = 0 (0.000)intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
* ? Xen14_138 = 75NA (NA)85 (0.930)
+62 bp
56/172 0.0 100% coding (1153/1197 nt) scrY_2 Sucrose porin
?Xen14_45 = 40401 0 (0.000)intergenic (‑73/–) Xen14_03654/– hypothetical protein/–
* ? Xen14_138 1232 =121 (0.860)99 (0.160) 60/294 1.2 21.4% intergenic (‑5/–) scrY_2/– Sucrose porin/–
?Xen14_206 = 331 607 (0.570)intergenic (+22/–) Xen14_04788/– hypothetical protein/–
* ? Xen14_138 = 13610 (0.000)58 (0.080) 35/204 1.8 100% intergenic (‑134/–) scrY_2/– Sucrose porin/–
?Xen14_141 47 = 0 (0.000)coding (24/1002 nt) Xen14_04755 hypothetical protein
* ? Xen14_141 1 =0 (0.000)34 (0.040)
+GCTCTCC
25/282 1.4 100% intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
?Xen14_39 = 48485 0 (0.000)intergenic (‑47/–) Xen14_03386/– hypothetical protein/–
* ? Xen14_141 1 =0 (0.000)64 (0.060)
+GCTCTCC
42/282 2.6 100% intergenic (–/‑23) –/Xen14_04755 –/hypothetical protein
?Xen14_52 1 = 0 (0.000)intergenic (–/+4) –/Xen14_03858 –/hypothetical protein
* ? Xen14_145 1 =0 (0.000)73 (0.230) 45/210 1.1 100% intergenic (–/–) –/– –/–
?Xen14_183 44 = 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_145 1 =0 (0.000)51 (0.170) 31/210 0.3 100% intergenic (–/–) –/– –/–
?Xen14_32 = 55348 0 (0.000)intergenic (+261/–) Xen14_03070/– hypothetical protein/–
* ? Xen14_145 1 =0 (0.000)330 (0.960) 121/214 0.0 100% intergenic (–/–) –/– –/–
?Xen14_54 42 = 0 (0.000)intergenic (–/‑49) –/hokA –/Protein HokA
* ? Xen14_145 1 =0 (0.000)69 (0.210) 51/212 1.1 100% intergenic (–/–) –/– –/–
?Xen14_85 = 11155 0 (0.000)intergenic (+105/–) Xen14_04471/– hypothetical protein/–
* ? Xen14_145 1 =0 (0.000)48 (0.140)
+33 bp
35/230 1.1 58.7% intergenic (–/–) –/– –/–
?Xen14_86 = 3481 87 (0.900)coding (44/213 nt) Xen14_04476 hypothetical protein
* ? Xen14_148 = 9890 (0.000)45 (0.530) 33/202 0.3 100% intergenic (‑92/–) Xen14_04761/– hypothetical protein/–
?Xen14_182 = 431 0 (0.000)intergenic (+22/–) Xen14_04782/– hypothetical protein/–
* ? Xen14_149 1 =0 (0.000)124 (0.980) 86/296 0.1 100% intergenic (–/+60) –/neo –/Aminoglycoside 3'‑phosphotransferase
?Xen14_82 1 = 0 (0.000)intergenic (–/‑679) –/Xen14_04422 –/hypothetical protein
* ? Xen14_149 = 9800 (0.000)139 (1.090) 89/296 0.1 100% intergenic (‑104/–) neo/– Aminoglycoside 3'‑phosphotransferase/–
?Xen14_82 1 = 0 (0.000)intergenic (–/‑679) –/Xen14_04422 –/hypothetical protein
* ? Xen14_156 328 =220 (1.170)42 (0.330) 25/280 2.5 23.0% coding (516/822 nt) Xen14_04768 hypothetical protein
?Xen14_88 = 9844 73 (0.990)coding (156/345 nt) Xen14_04512 hypothetical protein
* ? Xen14_159 = 72945 (0.310)43 (0.380) 28/296 2.9 38.2% intergenic (+397/–) Xen14_04769/– hypothetical protein/–
?Xen14_60 = 18896 94 (1.110)intergenic (+512/+385) Xen14_04101/yeeW hypothetical protein/Protein YeeW
* ? Xen14_160 1 =0 (0.000)85 (0.500) 55/282 2.2 100% intergenic (–/‑16) –/Xen14_04770 –/hypothetical protein
?Xen14_189 = 446 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_160 1 =0 (0.000)127 (0.730) 80/284 0.5 100% intergenic (–/‑16) –/Xen14_04770 –/hypothetical protein
?Xen14_189 = 447 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_160 = 7800 (0.000)91 (0.710)
+25 bp
63/246 0.2 74.2% intergenic (+524/–) Xen14_04770/– hypothetical protein/–
?Xen14_96 = 5300 76 (0.610)coding (8/1782 nt) Xen14_04570 hypothetical protein
* ? Xen14_163 = 7530 (0.000)95 (0.510) 61/294 0.4 61.9% intergenic (‑125/–) ompX_3/– Outer membrane protein X/–
?Xen14_170 = 168 117 (0.930)intergenic (–/–) –/– –/–
* ? Xen14_163 = 7530 (0.000)223 (0.930) 123/276 0.1 100% intergenic (‑125/–) ompX_3/– Outer membrane protein X/–
?Xen14_193 = 434 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_166 = 6850 (0.000)3120 (2.820) 237/244 -0.0 95.9% intergenic (–/–) –/– –/–
?Xen14_17 = 79810 265 (1.680)coding (460/741 nt) Xen14_02064 IS4 family transposase ISEc13
* ? Xen14_168 1 =0 (0.000)38 (0.050) 24/248 1.6 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_21 25 = 0 (0.000)intergenic (–/+52) –/add –/Adenosine deaminase
* ? Xen14_168 1 =0 (0.000)460 (0.590) 146/244 0.0 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_31 27 = 0 (0.000)intergenic (–/‑202) –/aspT_2 –/Aspartate/alanine antiporter
* ? Xen14_168 1 =0 (0.000)59 (0.080) 34/242 2.1 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_46 = 40324 0 (0.000)intergenic (‑92/–) Xen14_03701/– hypothetical protein/–
* ? Xen14_168 1 =0 (0.000)47 (0.060) 34/242 1.6 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_67 28 = 0 (0.000)intergenic (–/‑63) –/gltJ –/Glutamate/aspartate import permease protein GltJ
* ? Xen14_168 1 =0 (0.000)70 (0.090) 47/246 1.4 100% intergenic (–/+59) –/Xen14_04774 –/IS200/IS605 family transposase IS200C
?Xen14_80 26 = 0 (0.000)intergenic (–/+67) –/arcA –/Aerobic respiration control protein ArcA
* ? Xen14_168 = 6290 (0.000)304 (0.430) 111/220 0.0 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_22 = 74419 0 (0.000)intergenic (+75/–) ibpB/– Small heat shock protein IbpB/–
* ? Xen14_168 = 6290 (0.000)67 (0.090)
+ACCCCCAGCCTAGCT
43/266 0.1 87.1% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_29 = 59 22 (0.380)intergenic (–/+64) –/trpA –/Tryptophan synthase alpha chain
* ? Xen14_168 = 6290 (0.000)41 (0.060) 28/216 2.0 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_5 41 = 0 (0.000)intergenic (–/+80) –/cspE –/Cold shock‑like protein CspE
* ? Xen14_168 = 6290 (0.000)65 (0.100) 39/220 2.1 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_58 39 = 0 (0.000)intergenic (–/+73) –/creD_1 –/Inner membrane protein CreD
* ? Xen14_168 = 6290 (0.000)27 (0.040) 18/210 1.6 100% intergenic (‑111/–) Xen14_04774/– IS200/IS605 family transposase IS200C/–
?Xen14_62 44 = 0 (0.000)intergenic (–/+117) –/Xen14_04136 –/hypothetical protein
* ? Xen14_169 1 =0 (0.000)65 (0.350)
+24 bp
47/248 2.7 100% intergenic (–/+5) –/Xen14_04775 –/IS66 family transposase ISCro1
?Xen14_193 = 444 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_169 1 =0 (0.000)89 (0.890) 56/194 0.2 100% intergenic (–/+5) –/Xen14_04775 –/IS66 family transposase ISCro1
?Xen14_82 = 11932 0 (0.000)intergenic (+623/–) Xen14_04434/– hypothetical protein/–
* ? Xen14_171 1 =0 (0.000)62 (0.620) 39/294 0.9 62.3% intergenic (–/+60) –/Xen14_04776 –/hypothetical protein
?Xen14_64 = 2419 75 (1.050)coding (62/699 nt) Xen14_04183 hypothetical protein
* ? Xen14_172 1 =0 (0.000)44 (0.740) 29/294 0.3 54.0% intergenic (–/+60) –/Xen14_04777 –/hypothetical protein
?Xen14_64 = 2419 75 (1.050)coding (62/699 nt) Xen14_04183 hypothetical protein
* ? Xen14_174 1 =0 (0.000)68 (0.640)
+29 bp
35/238 1.2 69.3% intergenic (–/–) –/– –/–
?Xen14_96 5121 = 75 (0.600)coding (187/1782 nt) Xen14_04570 hypothetical protein
* ? Xen14_177 1 =0 (0.000)139 (1.070)
+24 bp
71/248 0.1 82.8% intergenic (–/–) –/– –/–
?Xen14_96 = 5308 69 (0.550)intergenic (‑1/+489) Xen14_04570/Xen14_04571 hypothetical protein/tRNA‑Arg(tct)
* ? Xen14_177 = 5490 (0.000)82 (0.860)
+57 bp
52/182 0.1 82.4% intergenic (–/–) –/– –/–
?Xen14_96 5541 = 57 (0.460)intergenic (‑234/+256) Xen14_04570/Xen14_04571 hypothetical protein/tRNA‑Arg(tct)
* ? Xen14_180 = 5260 (0.000)90 (1.150) 67/234 0.0 100% intergenic (–/–) –/– –/–
?Xen14_197 = 402 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_184 = 4730 (0.000)332 (0.700) 112/232 0.0 100% intergenic (–/–) –/– –/–
?Xen14_34 = 53052 0 (0.000)intergenic (+42/–) gpr_2/– L‑glyceraldehyde 3‑phosphate reductase/–
* ? Xen14_184 = 4730 (0.000)76 (0.160) 41/232 2.2 100% intergenic (–/–) –/– –/–
?Xen14_58 = 24540 0 (0.000)intergenic (+147/–) yjjW/– Putative glycyl‑radical enzyme activating enzyme YjjW/–
* ? Xen14_184 = 4730 (0.000)44 (0.100) 30/234 1.5 100% intergenic (–/–) –/– –/–
?Xen14_60 32 = 0 (0.000)intergenic (–/+159) –/hisI –/Histidine biosynthesis bifunctional protein HisIE
* ? Xen14_184 = 4730 (0.000)175 (0.380) 84/232 0.0 100% intergenic (–/–) –/– –/–
?Xen14_76 33 = 0 (0.000)intergenic (–/+178) –/norW –/Nitric oxide reductase FlRd‑NAD(+) reductase
* ? Xen14_188 = 4580 (0.000)76 (0.420)
+29 bp
49/238 2.4 58.5% intergenic (–/–) –/– –/–
?Xen14_45 = 36472 134 (0.770)intergenic (‑79/+18) Xen14_03645/Xen14_03646 hypothetical protein/hypothetical protein
* ? Xen14_188 = 4580 (0.000)88 (0.490)
+29 bp
63/238 1.2 62.0% intergenic (–/–) –/– –/–
?Xen14_45 = 36472 134 (0.770)intergenic (‑79/+18) Xen14_03645/Xen14_03646 hypothetical protein/hypothetical protein
* ? Xen14_192 1 =0 (0.000)52 (0.500)
+A
39/294 1.5 100% intergenic (–/+152) –/Xen14_04785 –/hypothetical protein
?Xen14_198 = 431 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_192 1 =0 (0.000)56 (0.540)
+G
42/294 1.2 100% intergenic (–/+152) –/Xen14_04785 –/hypothetical protein
?Xen14_198 = 431 0 (0.000)intergenic (–/–) –/– –/–
* ? Xen14_194 = 30582 (1.130)13 (0.200) 8/288 1.3 24.6% coding (266/270 nt) Xen14_04786 hypothetical protein
?Xen14_25 = 73236 0 (0.000)intergenic (‑406/–) Xen14_02638/– hypothetical protein/–
* ? Xen14_20 1 =0 (0.000)69 (1.170) 48/192 0.1 100% intergenic (–/‑80) –/Xen14_02217 –/hypothetical protein
?Xen14_33 = 53189 0 (0.000)intergenic (+37/–) Xen14_03104/– ISNCY family transposase ISRor2/–
* ? Xen14_20 75208 =116 (1.180)153 (1.080) 28/296 3.0 56.9% coding (438/735 nt) Xen14_02292 hypothetical protein
?Xen14_54 = 41 NA (NA)intergenic (–/‑50) –/hokA –/Protein HokA
* ? Xen14_200 1 =0 (0.000)85 (0.240)
+64 bp
44/168 0.8 100% intergenic (–/–) –/– –/–
?Xen14_26 = 75 NA (NA)intergenic (–/‑145) –/Xen14_02639 –/hypothetical protein
* ? Xen14_21 = 75NA (NA)21 (0.360)
+23 bp
16/250 2.7 100% intergenic (–/+2) –/add –/Adenosine deaminase
?Xen14_93 = 7777 0 (0.000)intergenic (‑302/–) ghrA/– Glyoxylate/hydroxypyruvate reductase A/–
* ? Xen14_33 1 =0 (0.000)28 (0.490)
+48 bp
21/200 2.0 100% intergenic (–/‑58) –/eco –/Ecotin
?Xen14_33 = 77 NA (NA)coding (19/489 nt) eco Ecotin
* ? Xen14_37 = 4288542 (0.440)42 (0.680)
+51 bp
24/194 1.8 60.4% noncoding (1/76 nt) Xen14_03291 tRNA‑Val(tac)
?Xen14_55 = 54 NA (NA)intergenic (–/‑434) –/nadA –/Quinolinate synthase A
* ? Xen14_38 15257 =142 (1.150)79 (0.680) 60/268 0.5 48.2% intergenic (‑104/‑373) xerC_4/Xen14_03318 Tyrosine recombinase XerC/hypothetical protein
?Xen14_61 77 = 41 (0.340)intergenic (–/‑67) –/hin_4 –/DNA‑invertase hin
* ? Xen14_38 48182 =133 (1.080)64 (0.580)
+40 bp
25/216 3.0 39.7% intergenic (+768/+108) Xen14_03354/Xen14_03355 hypothetical protein/IS21 family transposase IS100kyp
?Xen14_68 16309 = NA (NA)intergenic (+29/–) rph/– Ribonuclease PH/–
* ? Xen14_41 1 =0 (0.000)53 (0.890) 28/162 1.0 100% noncoding (1/76 nt) Xen14_03432 tRNA‑Arg(acg)
?Xen14_76 = 12864 0 (0.000)intergenic (+63/–) Xen14_04356/– tRNA‑Arg(acg)/–
* ? Xen14_55 = 267150 (0.000)55 (0.540)
+GTAGCAGTAAT
32/274 2.2 100% intergenic (‑222/–) Xen14_03965/– hypothetical protein/–
?Xen14_90 = 74 NA (NA)coding (1/747 nt) yafV Omega‑amidase YafV
* ? Xen14_78 1 =0 (0.000)58 (0.500)
+64 bp
41/168 2.3 100% intergenic (–/+1106) –/Xen14_04374 –/tRNA‑SeC(tca)
?Xen14_78 = 77 NA (NA)intergenic (–/+1030) –/Xen14_04374 –/tRNA‑SeC(tca)
* ? Xen14_86 1 =0 (0.000)91 (0.830)
+C
54/294 0.6 100% intergenic (–/+378) –/Xen14_04472 –/hypothetical protein
?Xen14_96 = 6916 0 (0.000)intergenic (‑44/–) Xen14_04574/– hypothetical protein/–
* ? Xen14_86 1 =0 (0.000)93 (0.850)
+T
58/294 0.5 100% intergenic (–/+378) –/Xen14_04472 –/hypothetical protein
?Xen14_96 = 6916 0 (0.000)intergenic (‑44/–) Xen14_04574/– hypothetical protein/–