New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_168	= 629	0 (0.000)	27 (0.040)	18/210	1.6	100%	intergenic (‑111/–)	Xen14_04774/–	IS200/IS605 family transposase IS200C/–
	?	Xen14_62	44 =	0 (0.000)					intergenic (–/+117)	–/Xen14_04136	–/hypothetical protein

ATTGGGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_168/517‑629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggggttttaataactggctcaaagctgaaagctttccggaACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGCC  >  Xen14_62/44‑142                                                                                                                                                                                                                      ATTGGGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAA                                                                >  1:198096/1‑150           CCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTAC                                                      >  1:864515/1‑150                  ATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAAACCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTA                                               >  1:4100550/1‑150                    TTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACG                                             >  1:4024914/1‑150                     TCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGA                                            >  1:1902508/1‑150                             GACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTT                                    >  1:1860439/1‑150                             GACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTT                                    >  1:1860440/1‑150                               CACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTC                                  <  1:1425740/150‑1                               CACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTC                                  <  1:1425741/150‑1                               CACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCATAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTC                                  >  1:375881/1‑150                                ACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCGAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTAC                                                      >  1:2773087/1‑129                                ACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCG                                 <  1:2460119/150‑1                                ACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCG                                 <  1:2460115/150‑1                                          GCCAGACCGCCAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCAT                       >  1:231198/1‑150                                             AGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACA                    >  1:117677/1‑150                                             AGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACA                    >  1:117678/1‑150                                             AGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACA                    >  1:117673/1‑150                                                   CAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTCGTATATTGCATACACCGGGG              <  1:2073920/150‑1                                                   CAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTCGTATATTGCATACACCGGGG              <  1:2073919/150‑1                                                   CAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTCGTATATTGCATACACCGGGG              <  1:2073917/150‑1                                                       GTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGAT          <  1:967173/150‑1                                                           TTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGA      <  1:2803003/150‑1                                                           TTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGA      >  1:3774900/1‑150                                                           TTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGA      >  1:1748776/1‑150                                                           TTTAACAAATAAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGA      <  1:2573586/150‑1                                                            TTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGTTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAA     >  1:4021521/1‑150                                                               ACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGCC  <  1:2574182/150‑1                                                                                                                                                                                                                      ATTGGGACCCCCTTTTGATTTCTTGTTTGACACTTGCAGTTGCCAGACCGCAAGGTGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTCAAAGCTGAAAGCTTTCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_168/517‑629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggggttttaataactggctcaaagctgaaagctttccggaACCCCCAGCCTAGCTGGGGGTTTTCTGTGCACAAGAAGAGCTCGTACGAAAGTACGAGCTTTTTTTCGTATATTGCATACACCGGGGGGATGAGAAGCC  >  Xen14_62/44‑142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.