New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_37	= 42885	42 (0.440)	42 (0.680) +GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG	24/194	1.8	60.4%	noncoding (1/76 nt)	Xen14_03291	tRNA‑Val(tac)
	?	Xen14_55	= 54	NA (NA)					intergenic (–/‑434)	–/nadA	–/Quinolinate synthase A

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCAAGCGAAGCGAGTCATCCTGCACG  >  Xen14_55/1‑202                                                                     |                                                                                                                                                     tagctcagttggtagaGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgc                                                                     >  1:964127/16‑150 (MQ=17)   gctcagttggtagaGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgcgc                                                                   <  1:431106/137‑1 (MQ=255)              agaGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAaacaac                                                        >  1:3893743/3‑150 (MQ=255)                  cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTCGAGTTGAGCGCAGCGAAACAACGGAg                                                    <  1:933512/150‑1 (MQ=255)                  cAGTTGACTTTTAATCAATTGGTCACAGGTTCGAATCCTGCACGACCCACCAATGCAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTCGAGTTGAGCGCAGCGAAACAACGGAg                                                    <  1:933516/150‑1 (MQ=255)                   aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCCCCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTCTCTGCGCTACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAACGAAACAACGGaac                                                   >  1:3151073/1‑148 (MQ=21)                   aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc                                                   <  1:1759886/150‑1 (MQ=255)                        aCTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTc                                              >  1:1926727/1‑150 (MQ=255)                         cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCGAAGATTCGAACCTGCAGGAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcg                                             >  1:2762583/1‑150 (MQ=255)                         cTTTTAATCAATTGGTCGCAGGTTAGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcg                                             >  1:4127552/1‑150 (MQ=255)                             tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggc                                         <  1:28455/150‑1 (MQ=255)                             tAATCAATTGGTCGCAGGTTCGAACCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCgcggc                                         <  1:28456/150‑1 (MQ=255)                              aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGACACAACGGAGCCGCTCgcggc                                         >  1:616695/1‑149 (MQ=255)                                   aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGc                                   <  1:3505815/150‑1 (MQ=255)                                   aTTGGTCGCAGGTTCGAATCCTACACGACCCACCCATGTAAAAAAGCGCCCTAAATGCACTTTTTTGCTAGCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGATCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGc                                   <  1:3505817/150‑1 (MQ=37)                                         cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAg                             >  1:1415711/1‑150 (MQ=255)                                          gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg                            <  1:546593/150‑1 (MQ=255)                                          gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg                            <  1:3312645/150‑1 (MQ=255)                                          gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCATAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttg                                                                             >  1:3407077/1‑101 (MQ=255)                                          gCAGGTTCGAATCCTGCACGACCCACCAATGGAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg                            <  1:1231797/150‑1 (MQ=255)                                          gCAGGTTCGAATCCGGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg                            <  1:3312644/150‑1 (MQ=255)                                             ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCa                         <  1:1141252/150‑1 (MQ=255)                                             ggTTCGAATCCTACACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCa                         <  1:714342/150‑1 (MQ=255)                                               ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCaag                       >  1:59106/1‑150 (MQ=255)                                               ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCaag                       <  1:1038790/150‑1 (MQ=255)                                                  gaacccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGCAGGGCaagcga                    >  1:2797526/5‑150 (MQ=255)                                                     tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGTCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCaagcgaagc                 <  1:3359476/150‑1 (MQ=255)                                                     tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCaagcgaagc                 <  1:1102840/150‑1 (MQ=255)                                                              aCCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCAAGCGAAGCGAGTCATcc        >  1:654392/1‑150 (MQ=255)                                                                ccaccaATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCAAGCGAAGCGAGTCATCCTg      >  1:1870628/1‑150 (MQ=255)                                                                    caATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCAAGCGAAGCGAGTCATCCTGCACg  >  1:981656/1‑150 (MQ=255)                                                                     |                                                                                                                                                     ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCACTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCAAGCGAAGCGAGTCATCCTGCACG  >  Xen14_55/1‑202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.