| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_102 | = 5552 | 0 (0.000) | 44 (0.050) +AGGAGAGC |
22/280 | 2.7 | 100% | intergenic (‑46/–) | pinR/– | Serine recombinase PinR/– |
| ? | Xen14_141 | 1 = | 0 (0.000) | intergenic (–/‑23) | –/Xen14_04755 | –/hypothetical protein | |||||
TTAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_102/5403‑5552 | ttAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTc < 1:1786603/150‑1 (MQ=255) tAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCa < 1:719044‑M1/150‑2 (MQ=255) tAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCa < 1:719048‑M1/150‑2 (MQ=255) agagagCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCag > 1:3508236‑M1/1‑148 (MQ=255) gagagCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAAGGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCagg > 1:2919451‑M1/1‑147 (MQ=255) gagCACATCAACGGTATTACGCCCTAAACTGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACCGTCACGAACGGTGCAATAGTGCTCCACACCCAACGCCTGAAATCAGATCCAGGGTGTAATCTGCTCTCCTGATTCaggag > 1:3978270‑M1/1‑145 (MQ=255) aTCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagctta > 1:1702462‑M1/1‑139 (MQ=255) cAACGGTGTTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatg < 1:85022‑M1/150‑14 (MQ=255) cAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAACCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttang < 1:3151420‑M1/150‑14 (MQ=255) gTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGAATCaggagagcaga > 1:2659814‑M1/1‑132 (MQ=255) aTTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcactt > 1:287382‑M1/1‑130 (MQ=255) gCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgag < 1:1365977‑M1/150‑26 (MQ=255) gCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgag < 1:3821094‑M1/150‑26 (MQ=255) cccTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgaga > 1:3084960‑M1/1‑124 (MQ=255) ggTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatg > 1:537308‑M1/1‑116 (MQ=255) cAATAGCTACCACAACCAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaa > 1:3040581‑M1/1‑113 (MQ=255) gCTACCACAACTAGCGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaa < 1:3418456‑M1/150‑43 (MQ=255) cTACCACAACTAACGTATCGTCACATCTTACTGTCACGAACGGTGCAATAGTGATCCCCACCCAACGCCTGAAATCAGATCCATGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaa < 1:3946842‑M1/150‑44 (MQ=255) tACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaa < 1:1495382‑M1/150‑45 (MQ=255) aCCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaat < 1:2792464‑M1/150‑46 (MQ=255) aaCTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgc < 1:1008503‑M1/150‑51 (MQ=255) tATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcccgcacaagcag > 1:67385‑M1/1‑92 (MQ=255) tacgtccagatactgtcacgaACGGTGCAATAGTGATCCACATCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggga > 1:1829567‑M1/11‑89 (MQ=255) tacgtccagatactgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggga > 1:1345309‑M1/11‑89 (MQ=255) cGTCACACCTTACTGTCACGAACGATGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggga > 1:3575039‑M1/1‑89 (MQ=255) gTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGAGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa > 1:891763‑M1/1‑88 (MQ=255) gTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCATGAAATCAGATCCAGGGAGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa > 1:891764‑M1/1‑88 (MQ=255) atcatcttcccctgtcacgaacgGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa < 1:1610275‑M1/139‑63 (MQ=255) ttacgcacacctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:498413‑M1/11‑87 (MQ=255) ttacgcacacctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:498412‑M1/11‑87 (MQ=255) tcatcttcccctgtcacgaacTGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:1438992‑M1/140‑64 (MQ=255) tcatcttcccctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:985279‑M1/11‑87 (MQ=255) tCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3343680‑M1/150‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:1620083‑M1/9‑87 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:278342‑M1/9‑87 (MQ=255) cacaCCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatg < 1:3366835‑M1/150‑65 (MQ=255) atcttcccctgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa < 1:1202600‑M1/139‑63 (MQ=255) acgtacacctgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatga > 1:2712667‑M1/9‑85 (MQ=255) tcttcccctgtcacgAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:785463‑M1/143‑67 (MQ=255) cgcacacctgtcacgAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:3116910‑M1/143‑67 (MQ=255) cgcacacctgtcacgAACGGTGCAATAGTGATCCACACCCAACGCATGAAATCAGATCCAGGGGGTAATCTGCCCTCCTGATTCaggagagcttatggtaacttttgagacagtcatggaaattaaaatcctgcacaagcagggaatgag > 1:2252017‑M1/8‑84 (MQ=255) cagatactgTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGAGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagt > 1:2673439‑M1/5‑83 (MQ=255) acCTTACTGCCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagt < 1:2247644‑M1/150‑68 (MQ=255) ttACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgag < 1:887378‑M1/105‑26 (MQ=255) ccctgTCACGAACGGTGCAATAGGGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagcc > 1:870394‑M1/3‑79 (MQ=255) ccctgTCACGAACGGTGCAATAGGGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagcc > 1:870397‑M1/3‑79 (MQ=255) acctgTCACGAACGGTGCAATAGTGATCCCCACCCAACGCATGAAATCAGATCCAGGGAGTAATCTGCTTTCCTGATTCaggagggcttatggtcacttttgagaaagttatggaaattaaaatcctgcacaagcagggaatgagtagcc > 1:3983439‑M1/3‑79 (MQ=255) cctGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccg > 1:3703404‑M1/2‑78 (MQ=255) aCTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtag > 1:1618493‑M1/1‑78 (MQ=255) aCTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtag > 1:1618491‑M1/1‑78 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaat > 1:926108‑M1/1‑77 (MQ=255) | TTAGAGAGCACATCAACGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_102/5403‑5552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |