New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_107	4859 =	NA (NA)	58 (0.540) +CC	34/292	1.1	32.7%	coding (263/333 nt)	torR_1	TorCAD operon transcriptional regulatory protein TorR
	?	Xen14_85	2720 =	121 (0.810)					coding (689/819 nt)	Xen14_04464	hypothetical protein

GCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_107/4710‑4932                                                                                                                                                      |                                                                                         gCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCg                                                                                          <  1:2901140/150‑1 (MQ=255)  cGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGt                                                                                         <  1:350741/150‑1 (MQ=255)  cGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGt                                                                                         <  1:1905171/150‑1 (MQ=255)   gggAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTa                                                                                        >  1:936322/1‑150 (MQ=255)    ggAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTaa                                                                                       <  1:1095689/150‑1 (MQ=255)       aaTTATGCAGAATCAACCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCg                                                                                    <  1:2467066/150‑1 (MQ=255)           aTGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTaaa                                                                                <  1:3130613/150‑1 (MQ=255)            tGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTTCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAAc                                                                               >  1:2875958/1‑150 (MQ=255)             gCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTTACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACt                                                                              >  1:2130277/1‑150 (MQ=255)             gCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTTACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACt                                                                              >  1:595599/1‑150 (MQ=255)               aGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGa                                                                            >  1:3644892/1‑150 (MQ=255)                   tCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGAccgc                                                                        <  1:1300993/150‑1 (MQ=255)                       ccGGTGGATTTGATTCTGCTGGATATCAGTTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTa                                                                    <  1:2118959/150‑1 (MQ=255)                            ggATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCTGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAg                                                               <  1:1842859/150‑1 (MQ=255)                              aTTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGcc                                                             >  1:516042/1‑150 (MQ=255)                              aTTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGcc                                                             >  1:3448010/1‑150 (MQ=255)                               tttGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCa                                                            >  1:811595/1‑150 (MQ=255)                                    ttCTGCTGGATACCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAAAGGTGGGGATTATTCCGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCATATATAGCCATCAGa                                                       >  1:2243068/1‑150 (MQ=255)                                        gctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                   <  1:3893376/150‑1 (MQ=255)                                              tatCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTgg                                             <  1:3919979/150‑1 (MQ=255)                                              tatCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTgg                                             <  1:3919549/150‑1 (MQ=255)                                               atCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGt                                            <  1:6369/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:1550606/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:1904273/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           >  1:1682605/1‑150 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGAACGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:1517272/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCAAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:2564493/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCAAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:2564494/150‑1 (MQ=255)                                                tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCAAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                           <  1:2564496/150‑1 (MQ=255)                                                 cAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTaa                                          <  1:1353072/150‑1 (MQ=255)                                                      tGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTATCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAg                                     <  1:547111/150‑1 (MQ=255)                                                      tGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTATCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAg                                     <  1:547110/150‑1 (MQ=255)                                                        cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                   >  1:217865/1‑150 (MQ=255)                                                        cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACACTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                   <  1:11664/150‑1 (MQ=255)                                                          cGATGAAAATGGCCTGATGTTACCCCGCGCCCTGCGAGAACACTCAAAGGTGGGGGTTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCAGTATGTAGCCATCAGACGAGAGGTGGTAACTTAGACGc                                 >  1:3328885/1‑150 (MQ=37)                                                           gATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGcc                                <  1:1383481/150‑1 (MQ=255)                                                           gATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGcc                                <  1:4073974/150‑1 (MQ=255)                                                           gATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAAAATTGGt                                            <  1:2066806/138‑1 (MQ=255)                                                             tGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCa                              >  1:1140764/1‑150 (MQ=255)                                                               aaaaTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGATAATTGGTAACTTAGACGCCCATc                            >  1:1679778/1‑150 (MQ=255)                                                                aaaTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                   >  1:1604034/1‑126 (MQ=255)                                                                       cTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAg                    <  1:1006729/150‑1 (MQ=255)                                                                             ttAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggac              <  1:3654356/150‑4 (MQ=255)                                                                             ttAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggac              >  1:2218008/1‑147 (MQ=255)                                                                              tAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggaca             >  1:2991129/1‑146 (MQ=255)                                                                               aaCCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacat            <  1:2938771/150‑6 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatct          >  1:3676095/1‑143 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatct          >  1:674925/1‑143 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatct          >  1:782185/1‑143 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatct          >  1:782186/1‑143 (MQ=255)                                                                                 cccGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatct          >  1:782187/1‑143 (MQ=255)                                                                                      gcCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatctaagta     >  1:247741/1‑138 (MQ=255)                                                                                        ccTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatctaagtatg   <  1:3162156/150‑15 (MQ=255)                                                                                         cTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatctaagtatgg  >  1:575997/1‑135 (MQ=18)                                                                                                                                                      |                                                                                         GCGGGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_107/4710‑4932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.