New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_110	1 =	0 (0.000)	32 (0.040)	20/246	1.5	100%	intergenic (–/+87)	–/ompW	–/Outer membrane protein W
	?	Xen14_168	26 =	0 (0.000)					intergenic (–/+34)	–/Xen14_04774	–/IS200/IS605 family transposase IS200C

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCAG  >  Xen14_110/1‑146                                                                     |                                                                                                                                                  ctatccgggcagcccatttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTa                                                                  <  1:1544453‑M1/82‑1 (MQ=255) ctatccgggcagcccatttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTa                                                                  <  1:1544454‑M1/82‑1 (MQ=255)  tatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATCTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTaa                                                                 <  1:4164112‑M1/83‑1 (MQ=255)     ccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTaaaaa                                                              >  1:1546261‑M1/65‑150 (MQ=255)     ccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTaaaaa                                                              >  1:2980797‑M1/65‑150 (MQ=255)       gggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAAt                                                            >  1:1036989‑M1/63‑150 (MQ=255)                  ttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGTAGGATATTTATTGATGGTAAAAACTTAGAAGCGGTa                                                 <  1:1761713‑M1/99‑1 (MQ=255)                    acgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAAc                                               <  1:2154565‑M1/101‑1 (MQ=255)                     cgggccgtaagtaacgaagttggntgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAAcc                                              >  1:4221821‑M1/49‑150 (MQ=255)                     cgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAAcc                                              <  1:2423239‑M1/102‑1 (MQ=255)                     cgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAAcc                                              <  1:2423240‑M1/102‑1 (MQ=255)                         ccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCa                                          <  1:365190‑M1/106‑1 (MQ=255)                         ccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCa                                          <  1:365188‑M1/106‑1 (MQ=255)                         ccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCa                                          <  1:365196‑M1/106‑1 (MQ=255)                         ccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCa                                          <  1:365197‑M1/106‑1 (MQ=255)                          cgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAACAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCag                                         >  1:964543‑M1/44‑150 (MQ=255)                          cgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAACAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCag                                         >  1:1120902‑M1/44‑150 (MQ=255)                          cgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAACAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCag                                         >  1:1120901‑M1/44‑150 (MQ=255)                              agtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGGAAAAAATTAGAAGCGGTAACCCGCAGAGaa                                     >  1:3965060‑M1/40‑150 (MQ=255)                                    gaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATaaa                               >  1:3350185‑M1/34‑150 (MQ=255)                                    gaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATaaa                               >  1:3350186‑M1/34‑150 (MQ=255)                                         tggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGGTGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATAccc                          <  1:987532‑M1/122‑1 (MQ=255)                                         tggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATAccc                          <  1:292534‑M1/122‑1 (MQ=255)                                           gatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCAc                        <  1:1810143‑M1/124‑1 (MQ=255)                                            atgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCAATTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACg                       >  1:2993617‑M1/26‑150 (MQ=255)                                              gcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACggg                     >  1:734583‑M1/24‑150 (MQ=255)                                              gcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACggg                     >  1:734584‑M1/24‑150 (MQ=255)                                                           cgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGt        <  1:2157231‑M1/140‑1 (MQ=255)                                                           cgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGt        <  1:1952204‑M1/140‑1 (MQ=255)                                                              gtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAGATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGt     >  1:3054787‑M1/8‑150 (MQ=255)                                                                gcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCa   >  1:2660758‑M1/6‑150 (MQ=255)                                                                 cgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCTGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCAg  <  1:4073814‑M1/146‑1 (MQ=255)                                                                     |                                                                                                                                                  ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCAG  >  Xen14_110/1‑146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.