#=GENOME_DIFF	1.0
#=CREATED	22:52:16 30 Oct 2024
#=PROGRAM	breseq 0.38.1 
#=COMMAND	breseq -j 32 -r /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen14.gff /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0004_good_1.fq.gz -o /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/breseq/Xen14_M/
#=REFSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen14.gff
#=READSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0004_good_1.fq.gz
#=CONVERTED-BASES	636038093
#=CONVERTED-READS	4263449
#=INPUT-BASES	636040793
#=INPUT-READS	4263467
#=MAPPED-BASES	612491068
#=MAPPED-READS	4109303
INS	1	100	Xen14_106	3879	T	repeat_length=1	repeat_new_copies=11	repeat_ref_copies=10	repeat_seq=T
SNP	2	148	Xen14_126	1873	T
SNP	3	149	Xen14_126	1876	A
SNP	4	150	Xen14_126	1885	T
SNP	5	151	Xen14_126	1888	A
SNP	6	152	Xen14_126	1897	A
SNP	7	154	Xen14_126	1942	G
SNP	8	155	Xen14_126	1945	C
SNP	9	156	Xen14_126	1951	G
SNP	10	157	Xen14_126	1964	G
SNP	11	158	Xen14_126	1966	T
SNP	12	159	Xen14_126	1979	C
SNP	13	161	Xen14_126	2023	A
SNP	14	162	Xen14_126	2026	A
SNP	15	163	Xen14_126	2043	A
SNP	16	164	Xen14_126	2053	T
INS	17	893	Xen14_143	77	GCTCTGC
SNP	18	265	Xen14_143	136	A
SNP	19	272	Xen14_143	594	T
SNP	20	273	Xen14_143	630	C
SNP	21	274	Xen14_143	651	G
SNP	22	275	Xen14_143	654	C
SNP	23	276	Xen14_143	696	A
SNP	24	277	Xen14_143	700	G
SNP	25	278	Xen14_143	726	A
SNP	26	279	Xen14_143	742	G
SNP	27	280	Xen14_143	753	T
SUB	28	281,282	Xen14_143	782	2	GT
SNP	29	283	Xen14_143	785	A
SNP	30	284	Xen14_143	793	G
SNP	31	285	Xen14_143	807	T
SNP	32	286	Xen14_143	839	T
SNP	33	287	Xen14_143	858	A
SNP	34	288	Xen14_143	879	G
SNP	35	290	Xen14_143	960	C
SNP	36	291	Xen14_143	967	T
SNP	37	292	Xen14_143	996	A
SNP	38	293	Xen14_143	1030	C
SNP	39	338	Xen14_17	79736	C
SNP	40	339	Xen14_17	79802	G
SNP	41	340	Xen14_17	80371	A
SUB	42	358,359	Xen14_191	220	2	GA
SUB	43	360,361	Xen14_191	226	2	GA
SNP	44	362	Xen14_191	229	T
SNP	45	363	Xen14_191	251	G
SNP	46	364	Xen14_191	268	G
SNP	47	365	Xen14_191	275	G
SNP	48	366	Xen14_191	292	C
SNP	49	367	Xen14_191	310	A
SNP	50	368	Xen14_191	334	A
SNP	51	369	Xen14_191	358	A
SNP	52	370	Xen14_191	370	C
SNP	53	376	Xen14_202	78	G
SNP	54	377	Xen14_202	105	A
SNP	55	378	Xen14_202	109	T
SNP	56	379	Xen14_202	126	G
SNP	57	380	Xen14_202	134	T
SNP	58	381	Xen14_202	140	A
SNP	59	382	Xen14_202	191	T
SNP	60	383	Xen14_202	244	T
SUB	61	384,385	Xen14_202	259	2	GG
SUB	62	386,387	Xen14_202	266	2	TC
SNP	63	388	Xen14_202	294	A
SNP	64	389	Xen14_202	314	A
SNP	65	390	Xen14_202	320	G
SNP	66	391	Xen14_202	323	A
SNP	67	392	Xen14_202	332	T
SNP	68	393	Xen14_202	335	A
SNP	69	394	Xen14_202	341	G
SNP	70	395	Xen14_202	344	C
SNP	71	411	Xen14_28	78	C
SNP	72	454	Xen14_38	48371	T
SNP	73	456	Xen14_43	24069	C
SNP	74	583	Xen14_83	11287	C
RA	75	.	Xen14_1	9115	0	C	T	bias_e_value=371.813	bias_p_value=7.4909e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.8	fisher_strand_p_value=5.73158e-06	frequency=2.603e-01	ks_quality_p_value=1	major_base=C	major_cov=30/24	major_frequency=7.397e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.603e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=30/24	total_cov=30/43
RA	76	.	Xen14_1	121795	0	A	G	bias_e_value=3722070	bias_p_value=0.749883	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.4	fisher_strand_p_value=1	frequency=4.253e-01	ks_quality_p_value=0.382282	major_base=A	major_cov=33/17	major_frequency=5.747e-01	minor_base=G	minor_cov=25/12	new_cov=25/12	polymorphism_frequency=4.253e-01	polymorphism_score=76.8	prediction=polymorphism	ref_cov=33/17	total_cov=58/29
RA	77	.	Xen14_10	78	0	G	T	bias_e_value=4120690	bias_p_value=0.830191	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.0	fisher_strand_p_value=0.479963	frequency=5.649e-01	ks_quality_p_value=0.994102	major_base=T	major_cov=164/219	major_frequency=5.649e-01	minor_base=G	minor_cov=118/177	new_cov=164/219	polymorphism_frequency=5.649e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=118/177	total_cov=282/397
RA	78	.	Xen14_10	132	0	T	G	bias_e_value=4703560	bias_p_value=0.947623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1299.4	fisher_strand_p_value=0.69432	frequency=6.610e-01	ks_quality_p_value=1	major_base=G	major_cov=308/390	major_frequency=6.610e-01	minor_base=T	minor_cov=153/205	new_cov=308/390	polymorphism_frequency=6.610e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=153/205	total_cov=462/595
RA	79	.	Xen14_10	205	0	G	A	bias_e_value=4807730	bias_p_value=0.968609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.4	fisher_strand_p_value=0.898452	frequency=4.787e-01	ks_quality_p_value=0.84605	major_base=G	major_cov=260/253	major_frequency=5.213e-01	minor_base=A	minor_cov=236/235	new_cov=236/235	polymorphism_frequency=4.787e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=260/253	total_cov=497/489
RA	80	.	Xen14_10	249	0	A	G	bias_e_value=4635360	bias_p_value=0.933881	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1117.3	fisher_strand_p_value=0.711038	frequency=2.830e-01	ks_quality_p_value=0.927008	major_base=A	major_cov=328/313	major_frequency=7.170e-01	minor_base=G	minor_cov=133/120	new_cov=133/120	polymorphism_frequency=2.830e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=328/313	total_cov=462/434
RA	81	.	Xen14_10	252	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1095.2	fisher_strand_p_value=1	frequency=2.867e-01	ks_quality_p_value=1	major_base=G	major_cov=324/298	major_frequency=7.133e-01	minor_base=A	minor_cov=130/120	new_cov=130/120	polymorphism_frequency=2.867e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=324/298	total_cov=454/418
RA	82	.	Xen14_10	263	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1066.8	fisher_strand_p_value=1	frequency=2.960e-01	ks_quality_p_value=1	major_base=C	major_cov=323/305	major_frequency=7.040e-01	minor_base=T	minor_cov=136/128	new_cov=136/128	polymorphism_frequency=2.960e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=323/305	total_cov=461/433
RA	83	.	Xen14_10	266	0	T	C	bias_e_value=1956350	bias_p_value=0.394145	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.2	fisher_strand_p_value=0.129469	frequency=4.875e-01	ks_quality_p_value=1	major_base=T	major_cov=257/214	major_frequency=5.125e-01	minor_base=C	minor_cov=222/226	new_cov=222/226	polymorphism_frequency=4.875e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=257/214	total_cov=479/441
RA	84	.	Xen14_10	394	0	T	C	bias_e_value=4895360	bias_p_value=0.986264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1404.0	fisher_strand_p_value=0.838901	frequency=2.802e-01	ks_quality_p_value=1	major_base=T	major_cov=417/364	major_frequency=7.198e-01	minor_base=C	minor_cov=165/139	new_cov=165/139	polymorphism_frequency=2.802e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=417/364	total_cov=582/505
RA	85	.	Xen14_10	472	0	G	A	bias_e_value=1632790	bias_p_value=0.328958	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.3	fisher_strand_p_value=0.099598	frequency=4.330e-01	ks_quality_p_value=0.998371	major_base=G	major_cov=154/155	major_frequency=5.670e-01	minor_base=A	minor_cov=100/136	new_cov=100/136	polymorphism_frequency=4.330e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=154/155	total_cov=254/291
RA	86	.	Xen14_10	510	0	G	C	bias_e_value=4946390	bias_p_value=0.996545	consensus_reject=FREQUENCY_CUTOFF	consensus_score=952.3	fisher_strand_p_value=0.927451	frequency=3.082e-01	ks_quality_p_value=0.989849	major_base=G	major_cov=175/220	major_frequency=6.918e-01	minor_base=C	minor_cov=79/97	new_cov=79/97	polymorphism_frequency=3.082e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=175/220	total_cov=254/318
RA	87	.	Xen14_10	512	0	G	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=905.5	fisher_strand_p_value=1	frequency=3.039e-01	ks_quality_p_value=1	major_base=G	major_cov=175/219	major_frequency=6.961e-01	minor_base=T	minor_cov=77/95	new_cov=77/95	polymorphism_frequency=3.039e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=175/219	total_cov=254/317
RA	88	.	Xen14_10	559	1	.	T	bias_e_value=4100010	bias_p_value=0.826025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=656.6	fisher_strand_p_value=0.787663	frequency=3.920e-01	ks_quality_p_value=0.598664	major_base=.	major_cov=143/178	major_frequency=6.080e-01	minor_base=T	minor_cov=89/118	new_cov=89/118	polymorphism_frequency=3.920e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=143/178	total_cov=232/296
RA	89	.	Xen14_10	560	0	A	G	bias_e_value=4823830	bias_p_value=0.971854	consensus_reject=FREQUENCY_CUTOFF	consensus_score=352.9	fisher_strand_p_value=1	frequency=4.015e-01	ks_quality_p_value=0.772321	major_base=A	major_cov=139/180	major_frequency=5.985e-01	minor_base=G	minor_cov=93/121	new_cov=93/121	polymorphism_frequency=4.015e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=139/180	total_cov=238/301
RA	90	.	Xen14_10	571	0	C	T	bias_e_value=4962150	bias_p_value=0.99972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=450.6	fisher_strand_p_value=1	frequency=3.593e-01	ks_quality_p_value=0.976441	major_base=C	major_cov=140/172	major_frequency=6.407e-01	minor_base=T	minor_cov=78/97	new_cov=78/97	polymorphism_frequency=3.593e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=140/172	total_cov=218/269
RA	91	.	Xen14_10	572	0	C	T	bias_e_value=4948940	bias_p_value=0.997059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=461.0	fisher_strand_p_value=0.924287	frequency=3.573e-01	ks_quality_p_value=1	major_base=C	major_cov=141/172	major_frequency=6.427e-01	minor_base=T	minor_cov=77/97	new_cov=77/97	polymorphism_frequency=3.573e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=141/172	total_cov=218/269
RA	92	.	Xen14_10	574	0	G	A	bias_e_value=4949010	bias_p_value=0.997073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=448.9	fisher_strand_p_value=0.924473	frequency=3.608e-01	ks_quality_p_value=1	major_base=G	major_cov=140/170	major_frequency=6.392e-01	minor_base=A	minor_cov=78/97	new_cov=78/97	polymorphism_frequency=3.608e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=140/170	total_cov=218/267
RA	93	.	Xen14_10	575	0	A	G	bias_e_value=4768930	bias_p_value=0.960793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=436.8	fisher_strand_p_value=0.774409	frequency=3.583e-01	ks_quality_p_value=0.947011	major_base=A	major_cov=139/169	major_frequency=6.417e-01	minor_base=G	minor_cov=75/97	new_cov=75/97	polymorphism_frequency=3.583e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=139/169	total_cov=215/267
RA	94	.	Xen14_10	610	0	C	T	bias_e_value=3124170	bias_p_value=0.629424	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.9	fisher_strand_p_value=0.376443	frequency=5.407e-01	ks_quality_p_value=0.729294	major_base=T	major_cov=112/114	major_frequency=5.407e-01	minor_base=C	minor_cov=86/106	new_cov=112/114	polymorphism_frequency=5.407e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=86/106	total_cov=200/221
RA	95	.	Xen14_10	77335	0	T	G	bias_e_value=0.00198197	bias_p_value=3.99305e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.6	fisher_strand_p_value=1.542e-11	frequency=2.276e-01	ks_quality_p_value=1	major_base=T	major_cov=69/43	major_frequency=7.724e-01	minor_base=G	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.276e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=69/43	total_cov=69/76
RA	96	.	Xen14_10	98248	0	G	C	bias_e_value=2.05389e-05	bias_p_value=4.13795e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.1	fisher_strand_p_value=1.35082e-13	frequency=3.208e-01	ks_quality_p_value=1	major_base=G	major_cov=51/21	major_frequency=6.792e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.208e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=51/21	total_cov=52/76
RA	97	.	Xen14_101	3509	0	T	G	bias_e_value=7.14639e-48	bias_p_value=1.43978e-54	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1496.7	fisher_strand_p_value=1.10887e-56	frequency=2.154e-01	ks_quality_p_value=1	major_base=T	major_cov=359/202	major_frequency=7.846e-01	minor_base=G	minor_cov=0/154	new_cov=0/154	polymorphism_frequency=2.154e-01	polymorphism_score=85.1	prediction=polymorphism	ref_cov=359/202	total_cov=359/358
RA	98	.	Xen14_104	5019	0	G	A	bias_e_value=475886	bias_p_value=0.0958765	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.2	fisher_strand_p_value=0.0342683	frequency=4.385e-01	ks_quality_p_value=0.566063	major_base=G	major_cov=46/27	major_frequency=5.615e-01	minor_base=A	minor_cov=25/32	new_cov=25/32	polymorphism_frequency=4.385e-01	polymorphism_score=123.4	prediction=polymorphism	ref_cov=46/27	total_cov=71/59
RA	99	.	Xen14_105	939	0	C	A	bias_e_value=6.61085	bias_p_value=1.33188e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.6	fisher_strand_p_value=7.66132e-08	frequency=2.017e-01	ks_quality_p_value=1	major_base=C	major_cov=53/42	major_frequency=7.983e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.017e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=53/42	total_cov=54/66
RA	100	.	Xen14_106	3879	1	.	T	bias_e_value=3095380	bias_p_value=0.623623	consensus_score=255.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.270079	major_base=T	major_cov=47/43	major_frequency=9.574e-01	minor_base=.	minor_cov=2/2	new_cov=47/43	polymorphism_frequency=9.574e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=2/2	total_cov=49/45
RA	101	.	Xen14_106	4201	0	C	G	bias_e_value=7.59329e-06	bias_p_value=1.52981e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.3	fisher_strand_p_value=4.83186e-14	frequency=2.093e-01	ks_quality_p_value=1	major_base=C	major_cov=24/78	major_frequency=7.907e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.093e-01	polymorphism_score=33.6	prediction=polymorphism	ref_cov=24/78	total_cov=58/79
RA	102	.	Xen14_108	127	0	T	C	bias_e_value=2687420	bias_p_value=0.541433	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.6	fisher_strand_p_value=0.535169	frequency=3.194e-01	ks_quality_p_value=0.396842	major_base=T	major_cov=70/60	major_frequency=6.806e-01	minor_base=C	minor_cov=36/25	new_cov=36/25	polymorphism_frequency=3.194e-01	polymorphism_score=121.3	prediction=polymorphism	ref_cov=70/60	total_cov=106/85
RA	103	.	Xen14_108	130	0	T	A	bias_e_value=3851840	bias_p_value=0.776028	consensus_reject=FREQUENCY_CUTOFF	consensus_score=532.8	fisher_strand_p_value=0.41053	frequency=2.894e-01	ks_quality_p_value=1	major_base=T	major_cov=135/113	major_frequency=7.106e-01	minor_base=A	minor_cov=50/51	new_cov=50/51	polymorphism_frequency=2.894e-01	polymorphism_score=277.4	prediction=polymorphism	ref_cov=135/113	total_cov=185/165
RA	104	.	Xen14_108	132	0	T	C	bias_e_value=3846670	bias_p_value=0.774986	consensus_reject=FREQUENCY_CUTOFF	consensus_score=425.4	fisher_strand_p_value=0.409362	frequency=2.886e-01	ks_quality_p_value=1	major_base=T	major_cov=136/113	major_frequency=7.114e-01	minor_base=C	minor_cov=50/51	new_cov=50/51	polymorphism_frequency=2.886e-01	polymorphism_score=197.6	prediction=polymorphism	ref_cov=136/113	total_cov=186/164
RA	105	.	Xen14_108	133	0	G	A	bias_e_value=3485790	bias_p_value=0.702279	consensus_reject=FREQUENCY_CUTOFF	consensus_score=421.6	fisher_strand_p_value=0.346854	frequency=2.914e-01	ks_quality_p_value=0.968238	major_base=G	major_cov=136/112	major_frequency=7.086e-01	minor_base=A	minor_cov=50/52	new_cov=50/52	polymorphism_frequency=2.914e-01	polymorphism_score=201.9	prediction=polymorphism	ref_cov=136/112	total_cov=186/164
RA	106	.	Xen14_108	139	0	G	A	bias_e_value=2577290	bias_p_value=0.519245	consensus_reject=FREQUENCY_CUTOFF	consensus_score=439.0	fisher_strand_p_value=0.198362	frequency=2.885e-01	ks_quality_p_value=1	major_base=G	major_cov=143/111	major_frequency=7.115e-01	minor_base=A	minor_cov=50/53	new_cov=50/53	polymorphism_frequency=2.885e-01	polymorphism_score=203.1	prediction=polymorphism	ref_cov=143/111	total_cov=193/164
RA	107	.	Xen14_108	144	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=359.3	fisher_strand_p_value=1	frequency=3.218e-01	ks_quality_p_value=1	major_base=C	major_cov=129/107	major_frequency=6.782e-01	minor_base=T	minor_cov=61/51	new_cov=61/51	polymorphism_frequency=3.218e-01	polymorphism_score=228.3	prediction=polymorphism	ref_cov=129/107	total_cov=190/158
RA	108	.	Xen14_108	154	0	A	T	bias_e_value=4758090	bias_p_value=0.958608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=487.0	fisher_strand_p_value=0.726435	frequency=3.043e-01	ks_quality_p_value=1	major_base=A	major_cov=125/115	major_frequency=6.957e-01	minor_base=T	minor_cov=57/48	new_cov=57/48	polymorphism_frequency=3.043e-01	polymorphism_score=290.8	prediction=polymorphism	ref_cov=125/115	total_cov=183/163
RA	109	.	Xen14_108	181	0	G	A	bias_e_value=4931040	bias_p_value=0.993452	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.5	fisher_strand_p_value=0.896849	frequency=2.736e-01	ks_quality_p_value=0.989869	major_base=G	major_cov=111/104	major_frequency=7.264e-01	minor_base=A	minor_cov=41/40	new_cov=41/40	polymorphism_frequency=2.736e-01	polymorphism_score=157.8	prediction=polymorphism	ref_cov=111/104	total_cov=152/144
RA	110	.	Xen14_108	2656	0	T	G	bias_e_value=2079810	bias_p_value=0.419018	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=0.14192	frequency=2.679e-01	ks_quality_p_value=1	major_base=T	major_cov=36/46	major_frequency=7.321e-01	minor_base=G	minor_cov=18/12	new_cov=18/12	polymorphism_frequency=2.679e-01	polymorphism_score=76.6	prediction=polymorphism	ref_cov=36/46	total_cov=54/58
RA	111	.	Xen14_112	3753	0	G	C	bias_e_value=104045	bias_p_value=0.0209619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.5	fisher_strand_p_value=0.0300236	frequency=2.791e-01	ks_quality_p_value=0.102994	major_base=G	major_cov=29/33	major_frequency=7.209e-01	minor_base=C	minor_cov=5/19	new_cov=5/19	polymorphism_frequency=2.791e-01	polymorphism_score=69.0	prediction=polymorphism	ref_cov=29/33	total_cov=34/52
RA	112	.	Xen14_112	3820	0	A	G	bias_e_value=611846	bias_p_value=0.123268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=0.295054	frequency=3.049e-01	ks_quality_p_value=0.0903342	major_base=A	major_cov=19/38	major_frequency=6.951e-01	minor_base=G	minor_cov=5/20	new_cov=5/20	polymorphism_frequency=3.049e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=19/38	total_cov=24/58
RA	113	.	Xen14_112	4065	0	A	G	bias_e_value=1149240	bias_p_value=0.231537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=0.348561	frequency=2.688e-01	ks_quality_p_value=0.17493	major_base=A	major_cov=43/25	major_frequency=7.312e-01	minor_base=G	minor_cov=13/12	new_cov=13/12	polymorphism_frequency=2.688e-01	polymorphism_score=45.4	prediction=polymorphism	ref_cov=43/25	total_cov=56/37
RA	114	.	Xen14_112	4183	0	G	A	bias_e_value=254324	bias_p_value=0.0512385	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=0.0174341	frequency=5.094e-01	ks_quality_p_value=0.514326	major_base=A	major_cov=32/49	major_frequency=5.094e-01	minor_base=G	minor_cov=46/32	new_cov=32/49	polymorphism_frequency=5.094e-01	polymorphism_score=176.9	prediction=polymorphism	ref_cov=46/32	total_cov=78/81
RA	115	.	Xen14_112	4409	0	A	G	bias_e_value=1163620	bias_p_value=0.234433	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.4	fisher_strand_p_value=0.379704	frequency=3.908e-01	ks_quality_p_value=0.163318	major_base=A	major_cov=25/28	major_frequency=6.092e-01	minor_base=G	minor_cov=20/14	new_cov=20/14	polymorphism_frequency=3.908e-01	polymorphism_score=70.2	prediction=polymorphism	ref_cov=25/28	total_cov=45/42
RA	116	.	Xen14_119	836	0	C	T	bias_e_value=135.028	bias_p_value=2.7204e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.1	fisher_strand_p_value=1.92081e-06	frequency=2.159e-01	ks_quality_p_value=1	major_base=C	major_cov=29/40	major_frequency=7.841e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=29/40	total_cov=48/40
RA	117	.	Xen14_12	8935	0	T	C	bias_e_value=55.7942	bias_p_value=1.12408e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.5	fisher_strand_p_value=7.43863e-07	frequency=2.169e-01	ks_quality_p_value=1	major_base=T	major_cov=41/24	major_frequency=7.831e-01	minor_base=C	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.169e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=41/24	total_cov=41/42
RA	118	.	Xen14_12	56193	0	T	C	bias_e_value=138.861	bias_p_value=2.79761e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.1	fisher_strand_p_value=1.97954e-06	frequency=2.208e-01	ks_quality_p_value=1	major_base=T	major_cov=42/18	major_frequency=7.792e-01	minor_base=C	minor_cov=1/16	new_cov=1/16	polymorphism_frequency=2.208e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=42/18	total_cov=43/34
RA	119	.	Xen14_12	88639	0	C	G	bias_e_value=0.977535	bias_p_value=1.96943e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.9	fisher_strand_p_value=1.01486e-08	frequency=2.000e-01	ks_quality_p_value=1	major_base=C	major_cov=10/46	major_frequency=8.000e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.000e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=10/46	total_cov=31/46
RA	120	.	Xen14_125	78	0	T	C	bias_e_value=4004350	bias_p_value=0.806754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.1	fisher_strand_p_value=0.846841	frequency=4.722e-01	ks_quality_p_value=0.527597	major_base=T	major_cov=25/32	major_frequency=5.278e-01	minor_base=C	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=4.722e-01	polymorphism_score=112.9	prediction=polymorphism	ref_cov=25/32	total_cov=49/59
RA	121	.	Xen14_125	402	0	G	A	bias_e_value=3620620	bias_p_value=0.729444	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=0.705433	frequency=4.911e-01	ks_quality_p_value=0.512618	major_base=G	major_cov=31/26	major_frequency=5.089e-01	minor_base=A	minor_cov=27/28	new_cov=27/28	polymorphism_frequency=4.911e-01	polymorphism_score=119.8	prediction=polymorphism	ref_cov=31/26	total_cov=58/55
RA	122	.	Xen14_125	612	0	C	T	bias_e_value=155968	bias_p_value=0.0314228	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.7	fisher_strand_p_value=0.0155316	frequency=4.412e-01	ks_quality_p_value=0.321087	major_base=C	major_cov=33/43	major_frequency=5.588e-01	minor_base=T	minor_cov=39/21	new_cov=39/21	polymorphism_frequency=4.412e-01	polymorphism_score=128.2	prediction=polymorphism	ref_cov=33/43	total_cov=72/64
RA	123	.	Xen14_125	628	0	G	A	bias_e_value=212949	bias_p_value=0.0429027	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.3	fisher_strand_p_value=0.0956085	frequency=4.653e-01	ks_quality_p_value=0.0756894	major_base=G	major_cov=36/41	major_frequency=5.347e-01	minor_base=A	minor_cov=41/26	new_cov=41/26	polymorphism_frequency=4.653e-01	polymorphism_score=148.9	prediction=polymorphism	ref_cov=36/41	total_cov=77/67
RA	124	.	Xen14_125	874	0	C	A	bias_e_value=3978990	bias_p_value=0.801644	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.6	fisher_strand_p_value=0.440503	frequency=5.030e-01	ks_quality_p_value=1	major_base=A	major_cov=45/39	major_frequency=5.030e-01	minor_base=C	minor_cov=39/44	new_cov=45/39	polymorphism_frequency=5.030e-01	polymorphism_score=260.8	prediction=polymorphism	ref_cov=39/44	total_cov=84/83
RA	125	.	Xen14_125	930	0	T	.	bias_e_value=3521430	bias_p_value=0.70946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.7	fisher_strand_p_value=0.342479	frequency=4.780e-01	ks_quality_p_value=1	major_base=T	major_cov=45/38	major_frequency=5.220e-01	minor_base=.	minor_cov=35/41	new_cov=35/41	polymorphism_frequency=4.780e-01	polymorphism_score=281.5	prediction=polymorphism	ref_cov=45/38	total_cov=80/80
RA	126	.	Xen14_125	968	0	C	T	bias_e_value=1087190	bias_p_value=0.219035	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.3	fisher_strand_p_value=0.870602	frequency=4.497e-01	ks_quality_p_value=0.0649701	major_base=C	major_cov=44/38	major_frequency=5.503e-01	minor_base=T	minor_cov=35/32	new_cov=35/32	polymorphism_frequency=4.497e-01	polymorphism_score=147.7	prediction=polymorphism	ref_cov=44/38	total_cov=79/70
RA	127	.	Xen14_125	1120	0	C	T	bias_e_value=1570310	bias_p_value=0.316369	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.0	fisher_strand_p_value=0.6293	frequency=4.516e-01	ks_quality_p_value=0.149446	major_base=C	major_cov=44/41	major_frequency=5.484e-01	minor_base=T	minor_cov=33/37	new_cov=33/37	polymorphism_frequency=4.516e-01	polymorphism_score=153.5	prediction=polymorphism	ref_cov=44/41	total_cov=77/78
RA	128	.	Xen14_125	1428	0	A	G	bias_e_value=259173	bias_p_value=0.0522153	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.0	fisher_strand_p_value=0.0246772	frequency=5.857e-01	ks_quality_p_value=0.371782	major_base=G	major_cov=30/52	major_frequency=5.857e-01	minor_base=A	minor_cov=33/25	new_cov=30/52	polymorphism_frequency=5.857e-01	polymorphism_score=124.3	prediction=polymorphism	ref_cov=33/25	total_cov=63/77
RA	129	.	Xen14_125	1485	0	T	A	bias_e_value=3224320	bias_p_value=0.649602	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.3	fisher_strand_p_value=0.2905	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=26/39	major_frequency=5.000e-01	minor_base=T	minor_cov=33/32	new_cov=26/39	polymorphism_frequency=5.000e-01	polymorphism_score=195.7	prediction=polymorphism	ref_cov=33/32	total_cov=59/71
RA	130	.	Xen14_125	1515	0	G	A	bias_e_value=4706430	bias_p_value=0.948201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.9	fisher_strand_p_value=1	frequency=5.758e-01	ks_quality_p_value=0.695908	major_base=A	major_cov=37/39	major_frequency=5.758e-01	minor_base=G	minor_cov=28/28	new_cov=37/39	polymorphism_frequency=5.758e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=28/28	total_cov=65/67
RA	131	.	Xen14_125	1698	0	A	T	bias_e_value=51855	bias_p_value=0.0104472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.8	fisher_strand_p_value=0.142168	frequency=5.294e-01	ks_quality_p_value=0.00968435	major_base=T	major_cov=40/41	major_frequency=5.294e-01	minor_base=A	minor_cov=45/27	new_cov=40/41	polymorphism_frequency=5.294e-01	polymorphism_score=215.2	prediction=polymorphism	ref_cov=45/27	total_cov=85/68
RA	132	.	Xen14_125	1702	0	T	G	bias_e_value=1357000	bias_p_value=0.273393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.9	fisher_strand_p_value=0.0765983	frequency=5.192e-01	ks_quality_p_value=1	major_base=G	major_cov=40/41	major_frequency=5.192e-01	minor_base=T	minor_cov=48/27	new_cov=40/41	polymorphism_frequency=5.192e-01	polymorphism_score=219.7	prediction=polymorphism	ref_cov=48/27	total_cov=88/68
RA	133	.	Xen14_125	1741	0	G	A	bias_e_value=1536880	bias_p_value=0.309634	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.7	fisher_strand_p_value=0.183434	frequency=4.973e-01	ks_quality_p_value=0.497268	major_base=G	major_cov=54/38	major_frequency=5.027e-01	minor_base=A	minor_cov=44/47	new_cov=44/47	polymorphism_frequency=4.973e-01	polymorphism_score=208.4	prediction=polymorphism	ref_cov=54/38	total_cov=98/85
RA	134	.	Xen14_125	1742	0	A	T	bias_e_value=2051440	bias_p_value=0.413301	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.5	fisher_strand_p_value=0.139008	frequency=5.027e-01	ks_quality_p_value=1	major_base=T	major_cov=44/48	major_frequency=5.027e-01	minor_base=A	minor_cov=54/37	new_cov=44/48	polymorphism_frequency=5.027e-01	polymorphism_score=275.5	prediction=polymorphism	ref_cov=54/37	total_cov=98/85
RA	135	.	Xen14_125	1790	0	A	G	bias_e_value=2163310	bias_p_value=0.435841	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.286155	frequency=4.972e-01	ks_quality_p_value=0.526539	major_base=A	major_cov=60/31	major_frequency=5.028e-01	minor_base=G	minor_cov=52/38	new_cov=52/38	polymorphism_frequency=4.972e-01	polymorphism_score=205.4	prediction=polymorphism	ref_cov=60/31	total_cov=112/69
RA	136	.	Xen14_125	1884	0	C	T	bias_e_value=294321	bias_p_value=0.0592965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.5	fisher_strand_p_value=0.520425	frequency=4.671e-01	ks_quality_p_value=0.0205792	major_base=C	major_cov=39/42	major_frequency=5.329e-01	minor_base=T	minor_cov=38/33	new_cov=38/33	polymorphism_frequency=4.671e-01	polymorphism_score=158.7	prediction=polymorphism	ref_cov=39/42	total_cov=77/76
RA	137	.	Xen14_125	1947	0	T	A	bias_e_value=2608980	bias_p_value=0.525629	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.2	fisher_strand_p_value=0.745213	frequency=4.901e-01	ks_quality_p_value=0.271511	major_base=T	major_cov=38/39	major_frequency=5.099e-01	minor_base=A	minor_cov=34/40	new_cov=34/40	polymorphism_frequency=4.901e-01	polymorphism_score=223.2	prediction=polymorphism	ref_cov=38/39	total_cov=73/80
RA	138	.	Xen14_125	2035	0	A	C	bias_e_value=3508590	bias_p_value=0.706873	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.1	fisher_strand_p_value=0.744801	frequency=5.229e-01	ks_quality_p_value=0.456595	major_base=C	major_cov=43/37	major_frequency=5.229e-01	minor_base=A	minor_cov=42/31	new_cov=43/37	polymorphism_frequency=5.229e-01	polymorphism_score=215.3	prediction=polymorphism	ref_cov=42/31	total_cov=85/68
RA	139	.	Xen14_125	2322	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.3	fisher_strand_p_value=1	frequency=4.054e-01	ks_quality_p_value=1	major_base=T	major_cov=12/10	major_frequency=5.946e-01	minor_base=C	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=4.054e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=12/10	total_cov=20/17
RA	140	.	Xen14_125	2379	0	T	A	bias_e_value=3133510	bias_p_value=0.631305	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=0.756799	frequency=4.737e-01	ks_quality_p_value=0.364689	major_base=T	major_cov=10/10	major_frequency=5.263e-01	minor_base=A	minor_cov=10/8	new_cov=10/8	polymorphism_frequency=4.737e-01	polymorphism_score=49.8	prediction=polymorphism	ref_cov=10/10	total_cov=20/18
RA	141	.	Xen14_125	2442	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.9	fisher_strand_p_value=1	frequency=5.507e-01	ks_quality_p_value=1	major_base=G	major_cov=16/22	major_frequency=5.507e-01	minor_base=A	minor_cov=13/18	new_cov=16/22	polymorphism_frequency=5.507e-01	polymorphism_score=63.0	prediction=polymorphism	ref_cov=13/18	total_cov=29/40
RA	142	.	Xen14_126	1734	0	T	C	bias_e_value=3858800	bias_p_value=0.777429	consensus_reject=FREQUENCY_CUTOFF	consensus_score=471.0	fisher_strand_p_value=0.412107	frequency=3.134e-01	ks_quality_p_value=1	major_base=T	major_cov=123/107	major_frequency=6.866e-01	minor_base=C	minor_cov=51/54	new_cov=51/54	polymorphism_frequency=3.134e-01	polymorphism_score=209.0	prediction=polymorphism	ref_cov=123/107	total_cov=174/162
RA	143	.	Xen14_126	1739	0	A	G	bias_e_value=4693170	bias_p_value=0.945529	consensus_reject=FREQUENCY_CUTOFF	consensus_score=415.8	fisher_strand_p_value=0.753759	frequency=3.789e-01	ks_quality_p_value=0.913614	major_base=A	major_cov=126/115	major_frequency=6.211e-01	minor_base=G	minor_cov=74/73	new_cov=74/73	polymorphism_frequency=3.789e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=126/115	total_cov=200/188
RA	144	.	Xen14_126	1768	0	C	T	bias_e_value=4908840	bias_p_value=0.98898	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=0.935927	frequency=5.909e-01	ks_quality_p_value=0.91381	major_base=T	major_cov=182/195	major_frequency=5.909e-01	minor_base=C	minor_cov=125/136	new_cov=182/195	polymorphism_frequency=5.909e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=125/136	total_cov=307/331
RA	145	.	Xen14_126	1770	0	C	T	bias_e_value=4145970	bias_p_value=0.835285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=0.809714	frequency=5.878e-01	ks_quality_p_value=0.597844	major_base=T	major_cov=182/193	major_frequency=5.878e-01	minor_base=C	minor_cov=125/138	new_cov=182/193	polymorphism_frequency=5.878e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=125/138	total_cov=307/331
RA	146	.	Xen14_126	1825	0	G	C	bias_e_value=4955900	bias_p_value=0.998461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1108.0	fisher_strand_p_value=0.94751	frequency=7.169e-01	ks_quality_p_value=0.997397	major_base=C	major_cov=410/403	major_frequency=7.169e-01	minor_base=G	minor_cov=161/160	new_cov=410/403	polymorphism_frequency=7.169e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=161/160	total_cov=575/564
RA	147	.	Xen14_126	1855	0	T	G	bias_e_value=4308100	bias_p_value=0.867949	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1915.4	fisher_strand_p_value=0.532314	frequency=7.520e-01	ks_quality_p_value=1	major_base=G	major_cov=534/500	major_frequency=7.520e-01	minor_base=T	minor_cov=183/158	new_cov=534/500	polymorphism_frequency=7.520e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=183/158	total_cov=717/661
RA	148	.	Xen14_126	1873	0	C	T	bias_e_value=2875430	bias_p_value=0.57931	consensus_score=3079.7	fisher_strand_p_value=0.259253	frequency=1	ks_quality_p_value=0.91712	major_base=T	major_cov=660/663	major_frequency=8.838e-01	minor_base=C	minor_cov=95/79	new_cov=660/663	polymorphism_frequency=8.838e-01	polymorphism_score=275.8	prediction=consensus	ref_cov=95/79	total_cov=757/744
RA	149	.	Xen14_126	1876	0	T	A	bias_e_value=2290250	bias_p_value=0.461415	consensus_score=3604.1	fisher_strand_p_value=0.174328	frequency=1	ks_quality_p_value=0.94368	major_base=A	major_cov=660/664	major_frequency=8.821e-01	minor_base=T	minor_cov=98/79	new_cov=660/664	polymorphism_frequency=8.821e-01	polymorphism_score=inf	prediction=consensus	ref_cov=98/79	total_cov=760/745
RA	150	.	Xen14_126	1885	0	G	T	bias_e_value=2037910	bias_p_value=0.410577	consensus_score=3600.3	fisher_strand_p_value=0.14054	frequency=1	ks_quality_p_value=0.979298	major_base=T	major_cov=631/650	major_frequency=8.841e-01	minor_base=G	minor_cov=93/75	new_cov=631/650	polymorphism_frequency=8.841e-01	polymorphism_score=inf	prediction=consensus	ref_cov=93/75	total_cov=725/726
RA	151	.	Xen14_126	1888	0	C	A	bias_e_value=839447	bias_p_value=0.169123	consensus_score=3670.6	fisher_strand_p_value=0.0401143	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=635/661	major_frequency=8.852e-01	minor_base=C	minor_cov=97/71	new_cov=635/661	polymorphism_frequency=8.852e-01	polymorphism_score=inf	prediction=consensus	ref_cov=97/71	total_cov=732/733
RA	152	.	Xen14_126	1897	0	T	A	bias_e_value=621114	bias_p_value=0.125135	consensus_score=3684.2	fisher_strand_p_value=0.02717	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=644/660	major_frequency=8.853e-01	minor_base=T	minor_cov=99/70	new_cov=644/660	polymorphism_frequency=8.853e-01	polymorphism_score=inf	prediction=consensus	ref_cov=99/70	total_cov=743/731
RA	153	.	Xen14_126	1900	0	A	T	bias_e_value=734311	bias_p_value=0.147941	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2876.4	fisher_strand_p_value=0.0338954	frequency=7.894e-01	ks_quality_p_value=0.994144	major_base=T	major_cov=568/583	major_frequency=7.894e-01	minor_base=A	minor_cov=173/134	new_cov=568/583	polymorphism_frequency=7.894e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=173/134	total_cov=741/720
RA	154	.	Xen14_126	1942	0	A	G	bias_e_value=675292	bias_p_value=0.136051	consensus_score=3288.3	fisher_strand_p_value=0.0302438	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=646/652	major_frequency=8.806e-01	minor_base=A	minor_cov=103/73	new_cov=646/652	polymorphism_frequency=8.806e-01	polymorphism_score=273.7	prediction=consensus	ref_cov=103/73	total_cov=749/725
RA	155	.	Xen14_126	1945	0	T	C	bias_e_value=770584	bias_p_value=0.155249	consensus_score=3285.9	fisher_strand_p_value=0.0364527	frequency=1	ks_quality_p_value=0.984087	major_base=C	major_cov=646/651	major_frequency=8.811e-01	minor_base=T	minor_cov=102/73	new_cov=646/651	polymorphism_frequency=8.811e-01	polymorphism_score=275.3	prediction=consensus	ref_cov=102/73	total_cov=748/724
RA	156	.	Xen14_126	1951	0	A	G	bias_e_value=298603	bias_p_value=0.0601593	consensus_score=3335.5	fisher_strand_p_value=0.011061	frequency=1	ks_quality_p_value=0.985495	major_base=G	major_cov=643/673	major_frequency=8.791e-01	minor_base=A	minor_cov=107/74	new_cov=643/673	polymorphism_frequency=8.791e-01	polymorphism_score=284.6	prediction=consensus	ref_cov=107/74	total_cov=750/747
RA	157	.	Xen14_126	1964	0	A	G	bias_e_value=2883140	bias_p_value=0.580864	consensus_score=2942.7	fisher_strand_p_value=0.238859	frequency=1	ks_quality_p_value=0.999962	major_base=G	major_cov=568/620	major_frequency=8.634e-01	minor_base=A	minor_cov=99/89	new_cov=568/620	polymorphism_frequency=8.634e-01	polymorphism_score=308.9	prediction=consensus	ref_cov=99/89	total_cov=667/709
RA	158	.	Xen14_126	1966	0	A	T	bias_e_value=2160460	bias_p_value=0.435266	consensus_score=3468.8	fisher_strand_p_value=0.150612	frequency=1	ks_quality_p_value=0.998382	major_base=T	major_cov=566/624	major_frequency=8.680e-01	minor_base=A	minor_cov=97/84	new_cov=566/624	polymorphism_frequency=8.680e-01	polymorphism_score=inf	prediction=consensus	ref_cov=97/84	total_cov=665/709
RA	159	.	Xen14_126	1979	0	T	C	bias_e_value=4449060	bias_p_value=0.896349	consensus_score=2694.6	fisher_strand_p_value=0.580748	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=524/578	major_frequency=8.549e-01	minor_base=T	minor_cov=93/94	new_cov=524/578	polymorphism_frequency=8.549e-01	polymorphism_score=308.0	prediction=consensus	ref_cov=93/94	total_cov=617/673
RA	160	.	Xen14_126	1987	0	A	G	bias_e_value=4899110	bias_p_value=0.987019	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1858.6	fisher_strand_p_value=0.84326	frequency=7.538e-01	ks_quality_p_value=1	major_base=G	major_cov=433/507	major_frequency=7.538e-01	minor_base=A	minor_cov=144/163	new_cov=433/507	polymorphism_frequency=7.538e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=144/163	total_cov=577/670
RA	161	.	Xen14_126	2023	0	G	A	bias_e_value=424755	bias_p_value=0.085575	consensus_score=2114.2	fisher_strand_p_value=0.0168303	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=463/452	major_frequency=8.273e-01	minor_base=G	minor_cov=78/113	new_cov=463/452	polymorphism_frequency=8.273e-01	polymorphism_score=inf	prediction=consensus	ref_cov=78/113	total_cov=541/565
RA	162	.	Xen14_126	2026	0	G	A	bias_e_value=220405	bias_p_value=0.0444047	consensus_score=2135.3	fisher_strand_p_value=0.00783328	frequency=1	ks_quality_p_value=0.962892	major_base=A	major_cov=465/452	major_frequency=8.314e-01	minor_base=G	minor_cov=74/112	new_cov=465/452	polymorphism_frequency=8.314e-01	polymorphism_score=inf	prediction=consensus	ref_cov=74/112	total_cov=541/564
RA	163	.	Xen14_126	2043	0	C	A	bias_e_value=15595.8	bias_p_value=0.00314207	consensus_score=2624.6	fisher_strand_p_value=0.00035338	frequency=1	ks_quality_p_value=0.992896	major_base=A	major_cov=479/449	major_frequency=8.278e-01	minor_base=C	minor_cov=72/121	new_cov=479/449	polymorphism_frequency=8.278e-01	polymorphism_score=inf	prediction=consensus	ref_cov=72/121	total_cov=551/571
RA	164	.	Xen14_126	2053	0	G	T	bias_e_value=886.939	bias_p_value=0.000178691	consensus_score=2267.1	fisher_strand_p_value=1.566e-05	frequency=1	ks_quality_p_value=0.941076	major_base=T	major_cov=437/392	major_frequency=8.096e-01	minor_base=G	minor_cov=69/126	new_cov=437/392	polymorphism_frequency=8.096e-01	polymorphism_score=inf	prediction=consensus	ref_cov=69/126	total_cov=506/521
RA	165	.	Xen14_126	2059	0	T	G	bias_e_value=10821.7	bias_p_value=0.00218025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1775.1	fisher_strand_p_value=0.000308304	frequency=7.739e-01	ks_quality_p_value=0.755097	major_base=G	major_cov=335/329	major_frequency=7.739e-01	minor_base=T	minor_cov=69/125	new_cov=335/329	polymorphism_frequency=7.739e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=69/125	total_cov=404/454
RA	166	.	Xen14_126	2062	0	T	C	bias_e_value=13641.1	bias_p_value=0.00274826	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1392.3	fisher_strand_p_value=0.000349514	frequency=7.822e-01	ks_quality_p_value=0.863535	major_base=C	major_cov=336/332	major_frequency=7.822e-01	minor_base=T	minor_cov=66/120	new_cov=336/332	polymorphism_frequency=7.822e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/120	total_cov=403/452
RA	167	.	Xen14_126	2063	0	C	A	bias_e_value=11867.4	bias_p_value=0.00239092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1695.0	fisher_strand_p_value=0.000279436	frequency=7.792e-01	ks_quality_p_value=0.923797	major_base=A	major_cov=336/331	major_frequency=7.792e-01	minor_base=C	minor_cov=67/122	new_cov=336/331	polymorphism_frequency=7.792e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=67/122	total_cov=404/453
RA	168	.	Xen14_126	2066	0	A	G	bias_e_value=26632.7	bias_p_value=0.00536566	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1377.3	fisher_strand_p_value=0.000642594	frequency=7.715e-01	ks_quality_p_value=1	major_base=G	major_cov=335/330	major_frequency=7.715e-01	minor_base=A	minor_cov=72/125	new_cov=335/330	polymorphism_frequency=7.715e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=72/125	total_cov=407/455
RA	169	.	Xen14_126	2068	0	T	G	bias_e_value=31979.1	bias_p_value=0.00644281	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1827.0	fisher_strand_p_value=0.000791493	frequency=7.747e-01	ks_quality_p_value=0.999787	major_base=G	major_cov=336/331	major_frequency=7.747e-01	minor_base=T	minor_cov=71/123	new_cov=336/331	polymorphism_frequency=7.747e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/123	total_cov=408/455
RA	170	.	Xen14_126	2071	0	G	A	bias_e_value=170174	bias_p_value=0.0342849	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.5	fisher_strand_p_value=0.00553238	frequency=5.791e-01	ks_quality_p_value=1	major_base=A	major_cov=254/240	major_frequency=5.791e-01	minor_base=G	minor_cov=150/209	new_cov=254/240	polymorphism_frequency=5.791e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=150/209	total_cov=406/449
RA	171	.	Xen14_131	849	0	C	G	bias_e_value=4081680	bias_p_value=0.822332	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.2	fisher_strand_p_value=1	frequency=5.333e-01	ks_quality_p_value=0.466667	major_base=G	major_cov=25/15	major_frequency=5.333e-01	minor_base=C	minor_cov=21/14	new_cov=25/15	polymorphism_frequency=5.333e-01	polymorphism_score=113.1	prediction=polymorphism	ref_cov=21/14	total_cov=46/29
RA	172	.	Xen14_131	852	0	T	C	bias_e_value=4870170	bias_p_value=0.981189	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.0	fisher_strand_p_value=0.812414	frequency=5.467e-01	ks_quality_p_value=1	major_base=C	major_cov=26/15	major_frequency=5.467e-01	minor_base=T	minor_cov=20/14	new_cov=26/15	polymorphism_frequency=5.467e-01	polymorphism_score=71.2	prediction=polymorphism	ref_cov=20/14	total_cov=46/29
RA	173	.	Xen14_131	870	0	G	A	bias_e_value=2245460	bias_p_value=0.452392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.2	fisher_strand_p_value=0.785872	frequency=4.262e-01	ks_quality_p_value=0.203026	major_base=G	major_cov=22/13	major_frequency=5.738e-01	minor_base=A	minor_cov=18/8	new_cov=18/8	polymorphism_frequency=4.262e-01	polymorphism_score=53.3	prediction=polymorphism	ref_cov=22/13	total_cov=40/21
RA	174	.	Xen14_131	871	0	C	T	bias_e_value=3931480	bias_p_value=0.792071	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.4	fisher_strand_p_value=0.429011	frequency=4.444e-01	ks_quality_p_value=1	major_base=C	major_cov=21/14	major_frequency=5.556e-01	minor_base=T	minor_cov=20/8	new_cov=20/8	polymorphism_frequency=4.444e-01	polymorphism_score=58.6	prediction=polymorphism	ref_cov=21/14	total_cov=41/22
RA	175	.	Xen14_131	905	0	C	A	bias_e_value=3791800	bias_p_value=0.763931	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=1	frequency=5.682e-01	ks_quality_p_value=0.39719	major_base=A	major_cov=30/20	major_frequency=5.682e-01	minor_base=C	minor_cov=22/16	new_cov=30/20	polymorphism_frequency=5.682e-01	polymorphism_score=112.8	prediction=polymorphism	ref_cov=22/16	total_cov=52/36
RA	176	.	Xen14_131	908	0	G	A	bias_e_value=4211900	bias_p_value=0.848568	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.1	fisher_strand_p_value=1	frequency=5.952e-01	ks_quality_p_value=0.50289	major_base=A	major_cov=30/20	major_frequency=5.952e-01	minor_base=G	minor_cov=20/14	new_cov=30/20	polymorphism_frequency=5.952e-01	polymorphism_score=70.9	prediction=polymorphism	ref_cov=20/14	total_cov=50/34
RA	177	.	Xen14_131	936	0	C	T	bias_e_value=2450300	bias_p_value=0.49366	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.3	fisher_strand_p_value=0.526733	frequency=6.022e-01	ks_quality_p_value=0.347287	major_base=T	major_cov=29/27	major_frequency=6.022e-01	minor_base=C	minor_cov=22/15	new_cov=29/27	polymorphism_frequency=6.022e-01	polymorphism_score=76.7	prediction=polymorphism	ref_cov=22/15	total_cov=51/42
RA	178	.	Xen14_131	993	0	C	T	bias_e_value=1901740	bias_p_value=0.383142	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.2	fisher_strand_p_value=0.670967	frequency=4.333e-01	ks_quality_p_value=0.185019	major_base=C	major_cov=23/28	major_frequency=5.667e-01	minor_base=T	minor_cov=20/19	new_cov=20/19	polymorphism_frequency=4.333e-01	polymorphism_score=83.3	prediction=polymorphism	ref_cov=23/28	total_cov=43/47
RA	179	.	Xen14_131	1267	0	T	C	bias_e_value=4808140	bias_p_value=0.968692	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.7	fisher_strand_p_value=0.760438	frequency=2.586e-01	ks_quality_p_value=1	major_base=T	major_cov=18/25	major_frequency=7.414e-01	minor_base=C	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=2.586e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=18/25	total_cov=23/35
RA	180	.	Xen14_131	1292	0	A	G	bias_e_value=4883660	bias_p_value=0.983906	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=0.82604	frequency=4.337e-01	ks_quality_p_value=1	major_base=A	major_cov=21/26	major_frequency=5.663e-01	minor_base=G	minor_cov=15/21	new_cov=15/21	polymorphism_frequency=4.337e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=21/26	total_cov=36/47
RA	181	.	Xen14_131	1298	0	A	G	bias_e_value=3779020	bias_p_value=0.761357	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.6	fisher_strand_p_value=0.826213	frequency=4.706e-01	ks_quality_p_value=0.477374	major_base=A	major_cov=20/25	major_frequency=5.294e-01	minor_base=G	minor_cov=16/24	new_cov=16/24	polymorphism_frequency=4.706e-01	polymorphism_score=85.4	prediction=polymorphism	ref_cov=20/25	total_cov=36/49
RA	182	.	Xen14_131	1352	0	G	A	bias_e_value=4678860	bias_p_value=0.942647	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.4	fisher_strand_p_value=0.681029	frequency=7.463e-01	ks_quality_p_value=1	major_base=A	major_cov=34/66	major_frequency=7.463e-01	minor_base=G	minor_cov=13/21	new_cov=34/66	polymorphism_frequency=7.463e-01	polymorphism_score=60.8	prediction=polymorphism	ref_cov=13/21	total_cov=47/87
RA	183	.	Xen14_131	1358	0	C	T	bias_e_value=4897780	bias_p_value=0.986751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.8	fisher_strand_p_value=0.841699	frequency=7.465e-01	ks_quality_p_value=1	major_base=T	major_cov=38/68	major_frequency=7.465e-01	minor_base=C	minor_cov=14/22	new_cov=38/68	polymorphism_frequency=7.465e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=14/22	total_cov=52/90
RA	184	.	Xen14_131	1376	0	A	G	bias_e_value=4905310	bias_p_value=0.988269	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.3	fisher_strand_p_value=0.850792	frequency=7.593e-01	ks_quality_p_value=1	major_base=G	major_cov=45/78	major_frequency=7.593e-01	minor_base=A	minor_cov=15/24	new_cov=45/78	polymorphism_frequency=7.593e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=15/24	total_cov=60/102
RA	185	.	Xen14_131	1401	0	A	C	bias_e_value=2565920	bias_p_value=0.516954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.7	fisher_strand_p_value=0.708732	frequency=7.921e-01	ks_quality_p_value=0.277889	major_base=C	major_cov=58/83	major_frequency=7.921e-01	minor_base=A	minor_cov=17/20	new_cov=58/83	polymorphism_frequency=7.921e-01	polymorphism_score=91.6	prediction=polymorphism	ref_cov=17/20	total_cov=75/104
RA	186	.	Xen14_131	1414	0	A	C	bias_e_value=2494070	bias_p_value=0.502477	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.3	fisher_strand_p_value=0.718412	frequency=7.765e-01	ks_quality_p_value=0.261913	major_base=C	major_cov=60/79	major_frequency=7.765e-01	minor_base=A	minor_cov=19/21	new_cov=60/79	polymorphism_frequency=7.765e-01	polymorphism_score=100.5	prediction=polymorphism	ref_cov=19/21	total_cov=79/100
RA	187	.	Xen14_131	1429	0	G	A	bias_e_value=4733250	bias_p_value=0.953605	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.7	fisher_strand_p_value=0.711279	frequency=7.791e-01	ks_quality_p_value=1	major_base=A	major_cov=57/77	major_frequency=7.791e-01	minor_base=G	minor_cov=18/20	new_cov=57/77	polymorphism_frequency=7.791e-01	polymorphism_score=66.6	prediction=polymorphism	ref_cov=18/20	total_cov=75/97
RA	188	.	Xen14_131	1505	0	C	T	bias_e_value=783753	bias_p_value=0.157902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.6	fisher_strand_p_value=0.068715	frequency=2.938e-01	ks_quality_p_value=0.533692	major_base=C	major_cov=65/60	major_frequency=7.062e-01	minor_base=T	minor_cov=35/17	new_cov=35/17	polymorphism_frequency=2.938e-01	polymorphism_score=101.4	prediction=polymorphism	ref_cov=65/60	total_cov=100/77
RA	189	.	Xen14_131	1684	1	.	T	bias_e_value=1505920	bias_p_value=0.303397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.6	fisher_strand_p_value=0.684184	frequency=5.960e-01	ks_quality_p_value=0.129536	major_base=T	major_cov=35/24	major_frequency=5.960e-01	minor_base=.	minor_cov=22/18	new_cov=35/24	polymorphism_frequency=5.960e-01	polymorphism_score=141.9	prediction=polymorphism	ref_cov=22/18	total_cov=57/42
RA	190	.	Xen14_131	1740	0	G	A	bias_e_value=3762450	bias_p_value=0.758017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.7	fisher_strand_p_value=0.390839	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=15/23	major_frequency=6.909e-01	minor_base=A	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=3.091e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=15/23	total_cov=24/31
RA	191	.	Xen14_131	1794	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.7	fisher_strand_p_value=1	frequency=3.393e-01	ks_quality_p_value=1	major_base=C	major_cov=22/15	major_frequency=6.607e-01	minor_base=T	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=3.393e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=22/15	total_cov=33/23
RA	192	.	Xen14_131	1818	0	A	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.4	fisher_strand_p_value=1	frequency=3.774e-01	ks_quality_p_value=1	major_base=A	major_cov=18/15	major_frequency=6.226e-01	minor_base=C	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=3.774e-01	polymorphism_score=56.3	prediction=polymorphism	ref_cov=18/15	total_cov=29/24
RA	193	.	Xen14_131	1828	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.4	fisher_strand_p_value=1	frequency=3.846e-01	ks_quality_p_value=1	major_base=C	major_cov=18/14	major_frequency=6.154e-01	minor_base=T	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=3.846e-01	polymorphism_score=38.3	prediction=polymorphism	ref_cov=18/14	total_cov=29/23
RA	194	.	Xen14_131	1829	0	T	G	bias_e_value=4117700	bias_p_value=0.82959	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.0	fisher_strand_p_value=1	frequency=3.846e-01	ks_quality_p_value=0.47632	major_base=T	major_cov=18/14	major_frequency=6.154e-01	minor_base=G	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=3.846e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=18/14	total_cov=29/23
RA	195	.	Xen14_131	1842	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.6	fisher_strand_p_value=1	frequency=4.167e-01	ks_quality_p_value=1	major_base=G	major_cov=15/13	major_frequency=5.833e-01	minor_base=A	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=4.167e-01	polymorphism_score=39.7	prediction=polymorphism	ref_cov=15/13	total_cov=26/22
RA	196	.	Xen14_131	1843	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=1	frequency=4.255e-01	ks_quality_p_value=1	major_base=T	major_cov=14/13	major_frequency=5.745e-01	minor_base=C	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=4.255e-01	polymorphism_score=39.8	prediction=polymorphism	ref_cov=14/13	total_cov=25/22
RA	197	.	Xen14_131	1845	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.0	fisher_strand_p_value=1	frequency=4.773e-01	ks_quality_p_value=1	major_base=A	major_cov=13/10	major_frequency=5.227e-01	minor_base=G	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=4.773e-01	polymorphism_score=43.6	prediction=polymorphism	ref_cov=13/10	total_cov=24/20
RA	198	.	Xen14_132	890	0	C	T	bias_e_value=4445930	bias_p_value=0.895717	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.0	fisher_strand_p_value=0.579588	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=72/61	major_frequency=7.778e-01	minor_base=T	minor_cov=23/15	new_cov=23/15	polymorphism_frequency=2.222e-01	polymorphism_score=67.3	prediction=polymorphism	ref_cov=72/61	total_cov=95/76
RA	199	.	Xen14_132	970	0	T	C	bias_e_value=4719860	bias_p_value=0.950906	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.3	fisher_strand_p_value=0.70551	frequency=3.835e-01	ks_quality_p_value=0.997128	major_base=T	major_cov=73/91	major_frequency=6.165e-01	minor_base=C	minor_cov=48/54	new_cov=48/54	polymorphism_frequency=3.835e-01	polymorphism_score=215.3	prediction=polymorphism	ref_cov=73/91	total_cov=121/145
RA	200	.	Xen14_132	976	0	G	A	bias_e_value=4938230	bias_p_value=0.994902	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.7	fisher_strand_p_value=0.900739	frequency=3.978e-01	ks_quality_p_value=1	major_base=G	major_cov=75/87	major_frequency=6.022e-01	minor_base=A	minor_cov=51/56	new_cov=51/56	polymorphism_frequency=3.978e-01	polymorphism_score=227.3	prediction=polymorphism	ref_cov=75/87	total_cov=126/143
RA	201	.	Xen14_132	988	0	G	A	bias_e_value=3559060	bias_p_value=0.717041	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.3	fisher_strand_p_value=0.805408	frequency=4.007e-01	ks_quality_p_value=0.434094	major_base=G	major_cov=79/84	major_frequency=5.993e-01	minor_base=A	minor_cov=51/58	new_cov=51/58	polymorphism_frequency=4.007e-01	polymorphism_score=233.4	prediction=polymorphism	ref_cov=79/84	total_cov=130/144
RA	202	.	Xen14_132	995	0	T	C	bias_e_value=4938670	bias_p_value=0.994991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.2	fisher_strand_p_value=0.901591	frequency=3.897e-01	ks_quality_p_value=1	major_base=T	major_cov=77/89	major_frequency=6.103e-01	minor_base=C	minor_cov=50/56	new_cov=50/56	polymorphism_frequency=3.897e-01	polymorphism_score=228.1	prediction=polymorphism	ref_cov=77/89	total_cov=127/145
RA	203	.	Xen14_132	1000	0	A	T	bias_e_value=3909620	bias_p_value=0.787667	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.8	fisher_strand_p_value=0.449223	frequency=3.916e-01	ks_quality_p_value=0.943505	major_base=A	major_cov=78/82	major_frequency=6.084e-01	minor_base=T	minor_cov=45/58	new_cov=45/58	polymorphism_frequency=3.916e-01	polymorphism_score=298.9	prediction=polymorphism	ref_cov=78/82	total_cov=123/141
RA	204	.	Xen14_132	1030	0	G	A	bias_e_value=1539260	bias_p_value=0.310113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.6	fisher_strand_p_value=0.0914157	frequency=4.170e-01	ks_quality_p_value=1	major_base=G	major_cov=71/73	major_frequency=5.830e-01	minor_base=A	minor_cov=39/64	new_cov=39/64	polymorphism_frequency=4.170e-01	polymorphism_score=219.2	prediction=polymorphism	ref_cov=71/73	total_cov=110/137
RA	205	.	Xen14_132	1032	0	T	G	bias_e_value=1834210	bias_p_value=0.369537	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.1	fisher_strand_p_value=0.117702	frequency=4.174e-01	ks_quality_p_value=1	major_base=T	major_cov=69/72	major_frequency=5.826e-01	minor_base=G	minor_cov=39/62	new_cov=39/62	polymorphism_frequency=4.174e-01	polymorphism_score=291.7	prediction=polymorphism	ref_cov=69/72	total_cov=108/134
RA	206	.	Xen14_132	1093	0	A	C	bias_e_value=340430	bias_p_value=0.0685861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.3	fisher_strand_p_value=0.0127999	frequency=4.302e-01	ks_quality_p_value=1	major_base=A	major_cov=81/70	major_frequency=5.698e-01	minor_base=C	minor_cov=43/71	new_cov=43/71	polymorphism_frequency=4.302e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=81/70	total_cov=124/141
RA	207	.	Xen14_132	1114	0	G	T	bias_e_value=153183	bias_p_value=0.0308617	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.4	fisher_strand_p_value=0.00488138	frequency=4.246e-01	ks_quality_p_value=1	major_base=G	major_cov=78/67	major_frequency=5.754e-01	minor_base=T	minor_cov=38/69	new_cov=38/69	polymorphism_frequency=4.246e-01	polymorphism_score=306.6	prediction=polymorphism	ref_cov=78/67	total_cov=117/137
RA	208	.	Xen14_132	1118	0	T	A	bias_e_value=55246.3	bias_p_value=0.0111304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.0	fisher_strand_p_value=0.0014811	frequency=3.571e-01	ks_quality_p_value=1	major_base=T	major_cov=87/75	major_frequency=6.429e-01	minor_base=A	minor_cov=29/61	new_cov=29/61	polymorphism_frequency=3.571e-01	polymorphism_score=257.3	prediction=polymorphism	ref_cov=87/75	total_cov=119/136
RA	209	.	Xen14_132	1210	0	T	A	bias_e_value=2593390	bias_p_value=0.522487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.4	fisher_strand_p_value=0.20161	frequency=5.017e-01	ks_quality_p_value=0.993861	major_base=A	major_cov=73/76	major_frequency=5.017e-01	minor_base=T	minor_cov=84/64	new_cov=73/76	polymorphism_frequency=5.017e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=84/64	total_cov=157/140
RA	210	.	Xen14_132	1212	0	A	T	bias_e_value=2603240	bias_p_value=0.524473	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=0.20161	frequency=4.983e-01	ks_quality_p_value=1	major_base=A	major_cov=85/64	major_frequency=5.017e-01	minor_base=T	minor_cov=73/75	new_cov=73/75	polymorphism_frequency=4.983e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=85/64	total_cov=158/140
RA	211	.	Xen14_132	1219	0	G	A	bias_e_value=4121680	bias_p_value=0.830392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.5	fisher_strand_p_value=0.480571	frequency=4.966e-01	ks_quality_p_value=0.993407	major_base=G	major_cov=80/66	major_frequency=5.034e-01	minor_base=A	minor_cov=72/72	new_cov=72/72	polymorphism_frequency=4.966e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=80/66	total_cov=152/138
RA	212	.	Xen14_132	1228	0	A	G	bias_e_value=4102740	bias_p_value=0.826576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.8	fisher_strand_p_value=0.47228	frequency=4.786e-01	ks_quality_p_value=1	major_base=A	major_cov=82/64	major_frequency=5.214e-01	minor_base=G	minor_cov=69/65	new_cov=69/65	polymorphism_frequency=4.786e-01	polymorphism_score=303.9	prediction=polymorphism	ref_cov=82/64	total_cov=151/129
RA	213	.	Xen14_132	1234	0	T	C	bias_e_value=3744510	bias_p_value=0.754403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.7	fisher_strand_p_value=0.389274	frequency=4.791e-01	ks_quality_p_value=0.994191	major_base=T	major_cov=77/60	major_frequency=5.209e-01	minor_base=C	minor_cov=64/62	new_cov=64/62	polymorphism_frequency=4.791e-01	polymorphism_score=287.6	prediction=polymorphism	ref_cov=77/60	total_cov=142/122
RA	214	.	Xen14_132	1235	0	T	A	bias_e_value=3755130	bias_p_value=0.756543	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.1	fisher_strand_p_value=0.389274	frequency=4.791e-01	ks_quality_p_value=1	major_base=T	major_cov=77/60	major_frequency=5.209e-01	minor_base=A	minor_cov=64/62	new_cov=64/62	polymorphism_frequency=4.791e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=77/60	total_cov=142/122
RA	215	.	Xen14_132	1311	0	T	C	bias_e_value=1090930	bias_p_value=0.219789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.8	fisher_strand_p_value=0.163915	frequency=2.906e-01	ks_quality_p_value=0.346679	major_base=T	major_cov=66/78	major_frequency=7.094e-01	minor_base=C	minor_cov=34/25	new_cov=34/25	polymorphism_frequency=2.906e-01	polymorphism_score=115.6	prediction=polymorphism	ref_cov=66/78	total_cov=100/103
RA	216	.	Xen14_132	1593	0	G	A	bias_e_value=442624	bias_p_value=0.0891751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.4	fisher_strand_p_value=0.0647061	frequency=3.086e-01	ks_quality_p_value=0.273812	major_base=G	major_cov=102/84	major_frequency=6.914e-01	minor_base=A	minor_cov=35/48	new_cov=35/48	polymorphism_frequency=3.086e-01	polymorphism_score=167.7	prediction=polymorphism	ref_cov=102/84	total_cov=137/132
RA	217	.	Xen14_132	1623	0	T	G	bias_e_value=1271850	bias_p_value=0.256239	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.5	fisher_strand_p_value=0.202762	frequency=3.817e-01	ks_quality_p_value=0.3454	major_base=T	major_cov=98/98	major_frequency=6.183e-01	minor_base=G	minor_cov=51/70	new_cov=51/70	polymorphism_frequency=3.817e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=98/98	total_cov=149/168
RA	218	.	Xen14_132	1629	0	C	A	bias_e_value=2084120	bias_p_value=0.419885	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.0	fisher_strand_p_value=0.249922	frequency=3.738e-01	ks_quality_p_value=0.569637	major_base=C	major_cov=99/102	major_frequency=6.262e-01	minor_base=A	minor_cov=51/69	new_cov=51/69	polymorphism_frequency=3.738e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=99/102	total_cov=150/171
RA	219	.	Xen14_132	1634	0	A	C	bias_e_value=1865670	bias_p_value=0.375874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.7	fisher_strand_p_value=0.909364	frequency=3.956e-01	ks_quality_p_value=0.132709	major_base=A	major_cov=90/104	major_frequency=6.044e-01	minor_base=C	minor_cov=58/69	new_cov=58/69	polymorphism_frequency=3.956e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=90/104	total_cov=148/173
RA	220	.	Xen14_132	1637	0	C	T	bias_e_value=1936480	bias_p_value=0.39014	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.8	fisher_strand_p_value=0.299186	frequency=3.769e-01	ks_quality_p_value=0.426216	major_base=C	major_cov=99/101	major_frequency=6.231e-01	minor_base=T	minor_cov=52/69	new_cov=52/69	polymorphism_frequency=3.769e-01	polymorphism_score=257.5	prediction=polymorphism	ref_cov=99/101	total_cov=151/170
RA	221	.	Xen14_132	1638	0	G	A	bias_e_value=1556360	bias_p_value=0.313559	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.3	fisher_strand_p_value=0.249552	frequency=3.704e-01	ks_quality_p_value=0.372111	major_base=G	major_cov=101/103	major_frequency=6.296e-01	minor_base=A	minor_cov=51/69	new_cov=51/69	polymorphism_frequency=3.704e-01	polymorphism_score=254.8	prediction=polymorphism	ref_cov=101/103	total_cov=152/172
RA	222	.	Xen14_132	1640	0	A	T	bias_e_value=1396700	bias_p_value=0.281392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.3	fisher_strand_p_value=0.298398	frequency=3.762e-01	ks_quality_p_value=0.267215	major_base=A	major_cov=97/102	major_frequency=6.238e-01	minor_base=T	minor_cov=51/69	new_cov=51/69	polymorphism_frequency=3.762e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=97/102	total_cov=152/171
RA	223	.	Xen14_132	1641	0	T	C	bias_e_value=1383640	bias_p_value=0.278761	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.4	fisher_strand_p_value=0.30043	frequency=3.789e-01	ks_quality_p_value=0.261954	major_base=T	major_cov=98/102	major_frequency=6.211e-01	minor_base=C	minor_cov=52/70	new_cov=52/70	polymorphism_frequency=3.789e-01	polymorphism_score=258.6	prediction=polymorphism	ref_cov=98/102	total_cov=150/173
RA	224	.	Xen14_132	1670	0	T	C	bias_e_value=4493730	bias_p_value=0.905348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.2	fisher_strand_p_value=1	frequency=4.266e-01	ks_quality_p_value=0.597763	major_base=T	major_cov=100/111	major_frequency=5.734e-01	minor_base=C	minor_cov=74/83	new_cov=74/83	polymorphism_frequency=4.266e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=100/111	total_cov=174/194
RA	225	.	Xen14_132	1719	0	T	C	bias_e_value=2733750	bias_p_value=0.550766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.3	fisher_strand_p_value=0.223311	frequency=4.286e-01	ks_quality_p_value=0.978262	major_base=T	major_cov=67/89	major_frequency=5.714e-01	minor_base=C	minor_cov=59/58	new_cov=59/58	polymorphism_frequency=4.286e-01	polymorphism_score=258.2	prediction=polymorphism	ref_cov=67/89	total_cov=126/147
RA	226	.	Xen14_132	1729	0	C	T	bias_e_value=3271020	bias_p_value=0.65901	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.9	fisher_strand_p_value=0.30105	frequency=4.221e-01	ks_quality_p_value=0.990507	major_base=C	major_cov=64/77	major_frequency=5.779e-01	minor_base=T	minor_cov=54/49	new_cov=54/49	polymorphism_frequency=4.221e-01	polymorphism_score=226.4	prediction=polymorphism	ref_cov=64/77	total_cov=118/126
RA	227	.	Xen14_133	96	0	T	G	bias_e_value=3919740	bias_p_value=0.789708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=397.3	fisher_strand_p_value=0.426229	frequency=2.488e-01	ks_quality_p_value=1	major_base=T	major_cov=86/71	major_frequency=7.512e-01	minor_base=G	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=2.488e-01	polymorphism_score=138.7	prediction=polymorphism	ref_cov=86/71	total_cov=111/98
RA	228	.	Xen14_133	98	0	T	C	bias_e_value=4275530	bias_p_value=0.861387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.3	fisher_strand_p_value=0.522064	frequency=2.476e-01	ks_quality_p_value=1	major_base=T	major_cov=86/72	major_frequency=7.524e-01	minor_base=C	minor_cov=25/27	new_cov=25/27	polymorphism_frequency=2.476e-01	polymorphism_score=96.6	prediction=polymorphism	ref_cov=86/72	total_cov=111/99
RA	229	.	Xen14_133	108	0	A	G	bias_e_value=2703630	bias_p_value=0.544697	consensus_reject=FREQUENCY_CUTOFF	consensus_score=359.6	fisher_strand_p_value=0.435246	frequency=2.325e-01	ks_quality_p_value=0.492804	major_base=A	major_cov=94/81	major_frequency=7.675e-01	minor_base=G	minor_cov=25/28	new_cov=25/28	polymorphism_frequency=2.325e-01	polymorphism_score=97.1	prediction=polymorphism	ref_cov=94/81	total_cov=119/109
RA	230	.	Xen14_133	111	0	G	A	bias_e_value=1833530	bias_p_value=0.369399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=369.0	fisher_strand_p_value=0.433494	frequency=2.304e-01	ks_quality_p_value=0.271371	major_base=G	major_cov=96/81	major_frequency=7.696e-01	minor_base=A	minor_cov=25/28	new_cov=25/28	polymorphism_frequency=2.304e-01	polymorphism_score=97.3	prediction=polymorphism	ref_cov=96/81	total_cov=121/109
RA	231	.	Xen14_133	116	0	G	T	bias_e_value=3541090	bias_p_value=0.713421	consensus_reject=FREQUENCY_CUTOFF	consensus_score=544.2	fisher_strand_p_value=0.346193	frequency=2.134e-01	ks_quality_p_value=1	major_base=G	major_cov=103/85	major_frequency=7.866e-01	minor_base=T	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=2.134e-01	polymorphism_score=124.9	prediction=polymorphism	ref_cov=103/85	total_cov=128/112
RA	232	.	Xen14_133	117	0	G	A	bias_e_value=1712930	bias_p_value=0.345103	consensus_reject=FREQUENCY_CUTOFF	consensus_score=398.2	fisher_strand_p_value=0.274434	frequency=2.176e-01	ks_quality_p_value=0.388209	major_base=G	major_cov=103/84	major_frequency=7.824e-01	minor_base=A	minor_cov=24/28	new_cov=24/28	polymorphism_frequency=2.176e-01	polymorphism_score=93.9	prediction=polymorphism	ref_cov=103/84	total_cov=128/112
RA	233	.	Xen14_133	120	0	G	A	bias_e_value=1900790	bias_p_value=0.382951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=415.1	fisher_strand_p_value=0.340355	frequency=2.075e-01	ks_quality_p_value=0.364473	major_base=G	major_cov=104/87	major_frequency=7.925e-01	minor_base=A	minor_cov=23/27	new_cov=23/27	polymorphism_frequency=2.075e-01	polymorphism_score=88.1	prediction=polymorphism	ref_cov=104/87	total_cov=129/114
RA	234	.	Xen14_133	126	0	G	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=560.1	fisher_strand_p_value=1	frequency=2.481e-01	ks_quality_p_value=1	major_base=G	major_cov=109/91	major_frequency=7.519e-01	minor_base=C	minor_cov=36/30	new_cov=36/30	polymorphism_frequency=2.481e-01	polymorphism_score=194.1	prediction=polymorphism	ref_cov=109/91	total_cov=145/121
RA	235	.	Xen14_133	153	0	T	G	bias_e_value=4191450	bias_p_value=0.844449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=422.1	fisher_strand_p_value=0.496948	frequency=2.830e-01	ks_quality_p_value=1	major_base=T	major_cov=103/87	major_frequency=7.170e-01	minor_base=G	minor_cov=37/38	new_cov=37/38	polymorphism_frequency=2.830e-01	polymorphism_score=200.9	prediction=polymorphism	ref_cov=103/87	total_cov=140/125
RA	236	.	Xen14_133	156	0	A	C	bias_e_value=4839340	bias_p_value=0.974977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=416.2	fisher_strand_p_value=0.784798	frequency=2.824e-01	ks_quality_p_value=1	major_base=A	major_cov=98/90	major_frequency=7.176e-01	minor_base=C	minor_cov=37/37	new_cov=37/37	polymorphism_frequency=2.824e-01	polymorphism_score=204.4	prediction=polymorphism	ref_cov=98/90	total_cov=135/127
RA	237	.	Xen14_133	171	0	C	T	bias_e_value=4465720	bias_p_value=0.899705	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.3	fisher_strand_p_value=0.586986	frequency=3.293e-01	ks_quality_p_value=1	major_base=C	major_cov=94/71	major_frequency=6.707e-01	minor_base=T	minor_cov=43/38	new_cov=43/38	polymorphism_frequency=3.293e-01	polymorphism_score=161.0	prediction=polymorphism	ref_cov=94/71	total_cov=137/109
RA	238	.	Xen14_133	186	0	A	G	bias_e_value=4444660	bias_p_value=0.895463	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.7	fisher_strand_p_value=0.579122	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=91/67	major_frequency=6.667e-01	minor_base=G	minor_cov=42/37	new_cov=42/37	polymorphism_frequency=3.333e-01	polymorphism_score=159.2	prediction=polymorphism	ref_cov=91/67	total_cov=133/107
RA	239	.	Xen14_133	195	0	G	T	bias_e_value=4650050	bias_p_value=0.936842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=362.0	fisher_strand_p_value=0.673574	frequency=3.017e-01	ks_quality_p_value=0.989253	major_base=G	major_cov=94/75	major_frequency=6.983e-01	minor_base=T	minor_cov=38/35	new_cov=38/35	polymorphism_frequency=3.017e-01	polymorphism_score=192.5	prediction=polymorphism	ref_cov=94/75	total_cov=132/110
RA	240	.	Xen14_133	198	0	A	G	bias_e_value=4932840	bias_p_value=0.993815	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.8	fisher_strand_p_value=0.890861	frequency=3.130e-01	ks_quality_p_value=1	major_base=A	major_cov=92/77	major_frequency=6.870e-01	minor_base=G	minor_cov=41/36	new_cov=41/36	polymorphism_frequency=3.130e-01	polymorphism_score=153.1	prediction=polymorphism	ref_cov=92/77	total_cov=133/113
RA	241	.	Xen14_133	1602	0	A	G	bias_e_value=3147460	bias_p_value=0.634115	consensus_reject=FREQUENCY_CUTOFF	consensus_score=399.1	fisher_strand_p_value=0.874148	frequency=2.099e-01	ks_quality_p_value=0.318237	major_base=A	major_cov=80/112	major_frequency=7.901e-01	minor_base=G	minor_cov=22/29	new_cov=22/29	polymorphism_frequency=2.099e-01	polymorphism_score=90.8	prediction=polymorphism	ref_cov=80/112	total_cov=102/141
RA	242	.	Xen14_133	1641	0	A	G	bias_e_value=4786850	bias_p_value=0.964402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.8	fisher_strand_p_value=0.745325	frequency=2.842e-01	ks_quality_p_value=1	major_base=A	major_cov=56/80	major_frequency=7.158e-01	minor_base=G	minor_cov=24/30	new_cov=24/30	polymorphism_frequency=2.842e-01	polymorphism_score=104.7	prediction=polymorphism	ref_cov=56/80	total_cov=81/110
RA	243	.	Xen14_133	1650	0	G	T	bias_e_value=3735520	bias_p_value=0.752593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.1	fisher_strand_p_value=0.738997	frequency=2.873e-01	ks_quality_p_value=0.521127	major_base=G	major_cov=52/77	major_frequency=7.127e-01	minor_base=T	minor_cov=23/29	new_cov=23/29	polymorphism_frequency=2.873e-01	polymorphism_score=138.5	prediction=polymorphism	ref_cov=52/77	total_cov=75/106
RA	244	.	Xen14_134	279	0	T	C	bias_e_value=849019	bias_p_value=0.171051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.3	fisher_strand_p_value=0.626709	frequency=4.314e-01	ks_quality_p_value=0.0649669	major_base=T	major_cov=46/41	major_frequency=5.686e-01	minor_base=C	minor_cov=32/34	new_cov=32/34	polymorphism_frequency=4.314e-01	polymorphism_score=143.3	prediction=polymorphism	ref_cov=46/41	total_cov=78/75
RA	245	.	Xen14_134	342	0	A	T	bias_e_value=4538620	bias_p_value=0.914392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.2	fisher_strand_p_value=1	frequency=4.717e-01	ks_quality_p_value=0.615865	major_base=A	major_cov=43/41	major_frequency=5.283e-01	minor_base=T	minor_cov=38/37	new_cov=38/37	polymorphism_frequency=4.717e-01	polymorphism_score=224.2	prediction=polymorphism	ref_cov=43/41	total_cov=81/79
RA	246	.	Xen14_134	523	0	G	T	bias_e_value=3080250	bias_p_value=0.620575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.9	fisher_strand_p_value=0.267758	frequency=3.370e-01	ks_quality_p_value=1	major_base=G	major_cov=63/57	major_frequency=6.630e-01	minor_base=T	minor_cov=38/23	new_cov=38/23	polymorphism_frequency=3.370e-01	polymorphism_score=166.6	prediction=polymorphism	ref_cov=63/57	total_cov=101/80
RA	247	.	Xen14_134	572	0	C	A	bias_e_value=4795100	bias_p_value=0.966066	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.2	fisher_strand_p_value=0.75106	frequency=3.713e-01	ks_quality_p_value=1	major_base=C	major_cov=53/52	major_frequency=6.287e-01	minor_base=A	minor_cov=33/29	new_cov=33/29	polymorphism_frequency=3.713e-01	polymorphism_score=175.0	prediction=polymorphism	ref_cov=53/52	total_cov=86/81
RA	248	.	Xen14_134	648	0	T	C	bias_e_value=4534720	bias_p_value=0.913607	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.6	fisher_strand_p_value=0.614251	frequency=4.207e-01	ks_quality_p_value=1	major_base=T	major_cov=43/41	major_frequency=5.793e-01	minor_base=C	minor_cov=28/33	new_cov=28/33	polymorphism_frequency=4.207e-01	polymorphism_score=130.8	prediction=polymorphism	ref_cov=43/41	total_cov=71/74
RA	249	.	Xen14_134	828	0	A	G	bias_e_value=2586360	bias_p_value=0.521073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.8	fisher_strand_p_value=0.398979	frequency=4.028e-01	ks_quality_p_value=0.500011	major_base=A	major_cov=38/48	major_frequency=5.972e-01	minor_base=G	minor_cov=30/28	new_cov=30/28	polymorphism_frequency=4.028e-01	polymorphism_score=123.9	prediction=polymorphism	ref_cov=38/48	total_cov=68/76
RA	250	.	Xen14_134	839	0	A	G	bias_e_value=3719190	bias_p_value=0.749303	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.7	fisher_strand_p_value=1	frequency=3.817e-01	ks_quality_p_value=0.381679	major_base=A	major_cov=39/42	major_frequency=6.183e-01	minor_base=G	minor_cov=24/26	new_cov=24/26	polymorphism_frequency=3.817e-01	polymorphism_score=105.3	prediction=polymorphism	ref_cov=39/42	total_cov=63/68
RA	251	.	Xen14_134	1015	0	A	T	bias_e_value=2248480	bias_p_value=0.452999	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.5	fisher_strand_p_value=0.873971	frequency=4.136e-01	ks_quality_p_value=0.182939	major_base=A	major_cov=47/48	major_frequency=5.864e-01	minor_base=T	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=4.136e-01	polymorphism_score=194.0	prediction=polymorphism	ref_cov=47/48	total_cov=79/83
RA	252	.	Xen14_134	1099	0	T	G	bias_e_value=2773300	bias_p_value=0.558735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.3	fisher_strand_p_value=0.454199	frequency=2.059e-01	ks_quality_p_value=0.492597	major_base=T	major_cov=30/51	major_frequency=7.941e-01	minor_base=G	minor_cov=10/11	new_cov=10/11	polymorphism_frequency=2.059e-01	polymorphism_score=51.3	prediction=polymorphism	ref_cov=30/51	total_cov=40/62
RA	253	.	Xen14_137	156	0	G	A	bias_e_value=3496510	bias_p_value=0.704439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.7	fisher_strand_p_value=1	frequency=2.529e-01	ks_quality_p_value=0.337823	major_base=G	major_cov=81/49	major_frequency=7.471e-01	minor_base=A	minor_cov=27/17	new_cov=27/17	polymorphism_frequency=2.529e-01	polymorphism_score=80.2	prediction=polymorphism	ref_cov=81/49	total_cov=108/66
RA	254	.	Xen14_137	246	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.5	fisher_strand_p_value=1	frequency=2.419e-01	ks_quality_p_value=1	major_base=C	major_cov=74/67	major_frequency=7.581e-01	minor_base=T	minor_cov=23/22	new_cov=23/22	polymorphism_frequency=2.419e-01	polymorphism_score=80.4	prediction=polymorphism	ref_cov=74/67	total_cov=97/89
RA	255	.	Xen14_137	574	0	T	C	bias_e_value=2145520	bias_p_value=0.432257	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.7	fisher_strand_p_value=0.411884	frequency=2.426e-01	ks_quality_p_value=0.361229	major_base=T	major_cov=81/72	major_frequency=7.574e-01	minor_base=C	minor_cov=22/27	new_cov=22/27	polymorphism_frequency=2.426e-01	polymorphism_score=91.4	prediction=polymorphism	ref_cov=81/72	total_cov=103/99
RA	256	.	Xen14_137	678	0	T	C	bias_e_value=4235980	bias_p_value=0.853418	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.5	fisher_strand_p_value=1	frequency=2.408e-01	ks_quality_p_value=0.510019	major_base=T	major_cov=70/75	major_frequency=7.592e-01	minor_base=C	minor_cov=22/24	new_cov=22/24	polymorphism_frequency=2.408e-01	polymorphism_score=84.5	prediction=polymorphism	ref_cov=70/75	total_cov=92/99
RA	257	.	Xen14_137	810	0	G	A	bias_e_value=2265240	bias_p_value=0.456376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.0	fisher_strand_p_value=0.296365	frequency=2.368e-01	ks_quality_p_value=0.545717	major_base=G	major_cov=54/91	major_frequency=7.632e-01	minor_base=A	minor_cov=21/24	new_cov=21/24	polymorphism_frequency=2.368e-01	polymorphism_score=82.0	prediction=polymorphism	ref_cov=54/91	total_cov=75/115
RA	258	.	Xen14_137	816	0	A	G	bias_e_value=4116720	bias_p_value=0.829392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.1	fisher_strand_p_value=0.476053	frequency=2.320e-01	ks_quality_p_value=1	major_base=A	major_cov=56/83	major_frequency=7.680e-01	minor_base=G	minor_cov=20/22	new_cov=20/22	polymorphism_frequency=2.320e-01	polymorphism_score=72.8	prediction=polymorphism	ref_cov=56/83	total_cov=76/106
RA	259	.	Xen14_137	939	0	C	T	bias_e_value=71667.6	bias_p_value=0.0144388	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.3	fisher_strand_p_value=0.0117249	frequency=2.642e-01	ks_quality_p_value=0.170709	major_base=C	major_cov=69/48	major_frequency=7.358e-01	minor_base=T	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=2.642e-01	polymorphism_score=78.9	prediction=polymorphism	ref_cov=69/48	total_cov=84/75
RA	260	.	Xen14_137	942	0	C	T	bias_e_value=26775.2	bias_p_value=0.00539439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.0	fisher_strand_p_value=0.0122074	frequency=2.577e-01	ks_quality_p_value=0.0529598	major_base=C	major_cov=71/50	major_frequency=7.423e-01	minor_base=T	minor_cov=15/27	new_cov=15/27	polymorphism_frequency=2.577e-01	polymorphism_score=78.4	prediction=polymorphism	ref_cov=71/50	total_cov=86/77
RA	261	.	Xen14_137	984	0	T	C	bias_e_value=248179	bias_p_value=0.0500004	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.0	fisher_strand_p_value=0.164413	frequency=2.337e-01	ks_quality_p_value=0.052946	major_base=T	major_cov=83/58	major_frequency=7.663e-01	minor_base=C	minor_cov=20/23	new_cov=20/23	polymorphism_frequency=2.337e-01	polymorphism_score=78.9	prediction=polymorphism	ref_cov=83/58	total_cov=103/81
RA	262	.	Xen14_137	1017	0	A	T	bias_e_value=1457980	bias_p_value=0.293738	consensus_reject=FREQUENCY_CUTOFF	consensus_score=435.8	fisher_strand_p_value=0.0846774	frequency=2.087e-01	ks_quality_p_value=1	major_base=A	major_cov=97/66	major_frequency=7.913e-01	minor_base=T	minor_cov=19/24	new_cov=19/24	polymorphism_frequency=2.087e-01	polymorphism_score=107.1	prediction=polymorphism	ref_cov=97/66	total_cov=116/90
RA	263	.	Xen14_137	1449	0	G	C	bias_e_value=4915360	bias_p_value=0.990293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=318.3	fisher_strand_p_value=0.86394	frequency=2.674e-01	ks_quality_p_value=1	major_base=G	major_cov=63/63	major_frequency=7.326e-01	minor_base=C	minor_cov=22/24	new_cov=22/24	polymorphism_frequency=2.674e-01	polymorphism_score=136.1	prediction=polymorphism	ref_cov=63/63	total_cov=86/87
RA	264	.	Xen14_138	1284	0	A	G	bias_e_value=4322920	bias_p_value=0.870935	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=1	frequency=5.223e-01	ks_quality_p_value=0.537083	major_base=G	major_cov=71/58	major_frequency=5.223e-01	minor_base=A	minor_cov=65/53	new_cov=71/58	polymorphism_frequency=5.223e-01	polymorphism_score=260.6	prediction=polymorphism	ref_cov=65/53	total_cov=138/111
RA	265	.	Xen14_143	136	0	G	A	bias_e_value=4858100	bias_p_value=0.978758	consensus_score=1561.8	fisher_strand_p_value=0.801514	frequency=1	ks_quality_p_value=0.999476	major_base=A	major_cov=344/373	major_frequency=8.011e-01	minor_base=G	minor_cov=83/95	new_cov=344/373	polymorphism_frequency=8.011e-01	polymorphism_score=inf	prediction=consensus	ref_cov=83/95	total_cov=427/468
RA	266	.	Xen14_143	155	0	G	A	bias_e_value=3949510	bias_p_value=0.795705	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1203.4	fisher_strand_p_value=0.43333	frequency=7.763e-01	ks_quality_p_value=1	major_base=A	major_cov=285/305	major_frequency=7.763e-01	minor_base=G	minor_cov=76/94	new_cov=285/305	polymorphism_frequency=7.763e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/94	total_cov=361/399
RA	267	.	Xen14_143	206	0	A	T	bias_e_value=4610370	bias_p_value=0.928848	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.5	fisher_strand_p_value=0.661815	frequency=4.789e-01	ks_quality_p_value=0.978097	major_base=A	major_cov=87/86	major_frequency=5.211e-01	minor_base=T	minor_cov=76/83	new_cov=76/83	polymorphism_frequency=4.789e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=87/86	total_cov=164/169
RA	268	.	Xen14_143	216	0	C	T	bias_e_value=1015430	bias_p_value=0.204577	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.4	fisher_strand_p_value=0.0696737	frequency=3.498e-01	ks_quality_p_value=0.740705	major_base=C	major_cov=88/83	major_frequency=6.502e-01	minor_base=T	minor_cov=36/56	new_cov=36/56	polymorphism_frequency=3.498e-01	polymorphism_score=189.1	prediction=polymorphism	ref_cov=88/83	total_cov=125/139
RA	269	.	Xen14_143	480	0	G	C	bias_e_value=4712370	bias_p_value=0.949396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.4	fisher_strand_p_value=0.835809	frequency=6.247e-01	ks_quality_p_value=0.836588	major_base=C	major_cov=133/115	major_frequency=6.247e-01	minor_base=G	minor_cov=78/71	new_cov=133/115	polymorphism_frequency=6.247e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=78/71	total_cov=211/186
RA	270	.	Xen14_143	498	0	C	T	bias_e_value=4954540	bias_p_value=0.998187	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.8	fisher_strand_p_value=1	frequency=6.828e-01	ks_quality_p_value=0.940395	major_base=T	major_cov=182/171	major_frequency=6.828e-01	minor_base=C	minor_cov=85/79	new_cov=182/171	polymorphism_frequency=6.828e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=85/79	total_cov=267/250
RA	271	.	Xen14_143	501	0	C	T	bias_e_value=4831890	bias_p_value=0.973476	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.8	fisher_strand_p_value=0.778701	frequency=6.738e-01	ks_quality_p_value=1	major_base=T	major_cov=177/170	major_frequency=6.738e-01	minor_base=C	minor_cov=88/80	new_cov=177/170	polymorphism_frequency=6.738e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=88/80	total_cov=266/250
RA	272	.	Xen14_143	594	0	C	T	bias_e_value=4909720	bias_p_value=0.989158	consensus_score=2289.2	fisher_strand_p_value=0.856405	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=484/527	major_frequency=8.791e-01	minor_base=C	minor_cov=65/74	new_cov=484/527	polymorphism_frequency=8.791e-01	polymorphism_score=215.1	prediction=consensus	ref_cov=65/74	total_cov=549/601
RA	273	.	Xen14_143	630	0	A	C	bias_e_value=4627150	bias_p_value=0.932229	consensus_score=3067.8	fisher_strand_p_value=0.655202	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=534/529	major_frequency=8.822e-01	minor_base=A	minor_cov=68/74	new_cov=534/529	polymorphism_frequency=8.822e-01	polymorphism_score=311.5	prediction=consensus	ref_cov=68/74	total_cov=602/604
RA	274	.	Xen14_143	651	0	T	G	bias_e_value=4403220	bias_p_value=0.887114	consensus_score=3037.5	fisher_strand_p_value=0.600118	frequency=1	ks_quality_p_value=0.940137	major_base=G	major_cov=500/542	major_frequency=8.749e-01	minor_base=T	minor_cov=68/81	new_cov=500/542	polymorphism_frequency=8.749e-01	polymorphism_score=inf	prediction=consensus	ref_cov=68/81	total_cov=568/623
RA	275	.	Xen14_143	654	0	A	C	bias_e_value=4501470	bias_p_value=0.906908	consensus_score=2999.6	fisher_strand_p_value=0.660451	frequency=1	ks_quality_p_value=0.909695	major_base=C	major_cov=500/539	major_frequency=8.753e-01	minor_base=A	minor_cov=68/80	new_cov=500/539	polymorphism_frequency=8.753e-01	polymorphism_score=inf	prediction=consensus	ref_cov=68/80	total_cov=568/622
RA	276	.	Xen14_143	696	0	G	A	bias_e_value=4442360	bias_p_value=0.894998	consensus_score=2659.4	fisher_strand_p_value=0.581745	frequency=1	ks_quality_p_value=0.994032	major_base=A	major_cov=557/496	major_frequency=8.871e-01	minor_base=G	minor_cov=67/67	new_cov=557/496	polymorphism_frequency=8.871e-01	polymorphism_score=205.6	prediction=consensus	ref_cov=67/67	total_cov=625/563
RA	277	.	Xen14_143	700	0	C	G	bias_e_value=4589060	bias_p_value=0.924555	consensus_score=3036.1	fisher_strand_p_value=0.646522	frequency=1	ks_quality_p_value=0.986224	major_base=G	major_cov=555/492	major_frequency=8.865e-01	minor_base=C	minor_cov=68/66	new_cov=555/492	polymorphism_frequency=8.865e-01	polymorphism_score=inf	prediction=consensus	ref_cov=68/66	total_cov=625/562
RA	278	.	Xen14_143	726	0	G	A	bias_e_value=3994540	bias_p_value=0.804776	consensus_score=2624.0	fisher_strand_p_value=0.456617	frequency=1	ks_quality_p_value=0.973121	major_base=A	major_cov=534/500	major_frequency=8.883e-01	minor_base=G	minor_cov=72/58	new_cov=534/500	polymorphism_frequency=8.883e-01	polymorphism_score=200.1	prediction=consensus	ref_cov=72/58	total_cov=609/558
RA	279	.	Xen14_143	742	0	C	G	bias_e_value=2320470	bias_p_value=0.467503	consensus_score=3146.2	fisher_strand_p_value=0.167903	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=547/537	major_frequency=8.907e-01	minor_base=C	minor_cov=76/57	new_cov=547/537	polymorphism_frequency=8.907e-01	polymorphism_score=inf	prediction=consensus	ref_cov=76/57	total_cov=624/595
RA	280	.	Xen14_143	753	0	C	T	bias_e_value=3098990	bias_p_value=0.624351	consensus_score=2762.8	fisher_strand_p_value=0.273378	frequency=1	ks_quality_p_value=0.989968	major_base=T	major_cov=560/520	major_frequency=8.889e-01	minor_base=C	minor_cov=77/58	new_cov=560/520	polymorphism_frequency=8.889e-01	polymorphism_score=207.9	prediction=consensus	ref_cov=77/58	total_cov=637/580
RA	281	.	Xen14_143	782	0	A	G	bias_e_value=4949530	bias_p_value=0.997177	consensus_score=2192.8	fisher_strand_p_value=0.926396	frequency=1	ks_quality_p_value=0.999368	major_base=G	major_cov=464/420	major_frequency=8.675e-01	minor_base=A	minor_cov=70/65	new_cov=464/420	polymorphism_frequency=8.675e-01	polymorphism_score=217.1	prediction=consensus	ref_cov=70/65	total_cov=534/486
RA	282	.	Xen14_143	783	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_score=2170.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=464/418	major_frequency=8.664e-01	minor_base=C	minor_cov=71/65	new_cov=464/418	polymorphism_frequency=8.664e-01	polymorphism_score=217.8	prediction=consensus	ref_cov=71/65	total_cov=535/485
RA	283	.	Xen14_143	785	0	T	A	bias_e_value=4907620	bias_p_value=0.988735	consensus_score=2535.5	fisher_strand_p_value=0.853702	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=462/418	major_frequency=8.661e-01	minor_base=T	minor_cov=73/63	new_cov=462/418	polymorphism_frequency=8.661e-01	polymorphism_score=inf	prediction=consensus	ref_cov=73/63	total_cov=537/484
RA	284	.	Xen14_143	793	0	A	G	bias_e_value=4095060	bias_p_value=0.825029	consensus_score=2583.5	fisher_strand_p_value=0.470223	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=523/497	major_frequency=8.801e-01	minor_base=A	minor_cov=76/63	new_cov=523/497	polymorphism_frequency=8.801e-01	polymorphism_score=212.6	prediction=consensus	ref_cov=76/63	total_cov=599/561
RA	285	.	Xen14_143	807	0	C	T	bias_e_value=4093500	bias_p_value=0.824713	consensus_score=2570.0	fisher_strand_p_value=0.469805	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=514/505	major_frequency=8.800e-01	minor_base=C	minor_cov=75/64	new_cov=514/505	polymorphism_frequency=8.800e-01	polymorphism_score=215.7	prediction=consensus	ref_cov=75/64	total_cov=590/570
RA	286	.	Xen14_143	839	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_score=2811.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=553/557	major_frequency=8.817e-01	minor_base=C	minor_cov=74/75	new_cov=553/557	polymorphism_frequency=8.817e-01	polymorphism_score=234.2	prediction=consensus	ref_cov=74/75	total_cov=627/633
RA	287	.	Xen14_143	858	0	G	A	bias_e_value=4748120	bias_p_value=0.9566	consensus_score=2832.2	fisher_strand_p_value=0.720235	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=551/559	major_frequency=8.880e-01	minor_base=G	minor_cov=67/73	new_cov=551/559	polymorphism_frequency=8.880e-01	polymorphism_score=208.2	prediction=consensus	ref_cov=67/73	total_cov=618/635
RA	288	.	Xen14_143	879	0	A	G	bias_e_value=3081110	bias_p_value=0.620749	consensus_score=2815.9	fisher_strand_p_value=0.269377	frequency=1	ks_quality_p_value=0.994478	major_base=G	major_cov=585/533	major_frequency=8.762e-01	minor_base=A	minor_cov=75/83	new_cov=585/533	polymorphism_frequency=8.762e-01	polymorphism_score=253.5	prediction=consensus	ref_cov=75/83	total_cov=661/616
RA	289	.	Xen14_143	915	0	C	T	bias_e_value=4229220	bias_p_value=0.852058	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2331.9	fisher_strand_p_value=0.508005	frequency=7.907e-01	ks_quality_p_value=1	major_base=T	major_cov=542/546	major_frequency=7.907e-01	minor_base=C	minor_cov=150/138	new_cov=542/546	polymorphism_frequency=7.907e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=150/138	total_cov=693/686
RA	290	.	Xen14_143	960	0	T	C	bias_e_value=4389460	bias_p_value=0.88434	consensus_score=2988.6	fisher_strand_p_value=0.560031	frequency=1	ks_quality_p_value=0.998842	major_base=C	major_cov=613/573	major_frequency=8.785e-01	minor_base=T	minor_cov=89/75	new_cov=613/573	polymorphism_frequency=8.785e-01	polymorphism_score=255.5	prediction=consensus	ref_cov=89/75	total_cov=702/648
RA	291	.	Xen14_143	967	0	C	T	bias_e_value=3809650	bias_p_value=0.767528	consensus_score=2932.1	fisher_strand_p_value=0.447246	frequency=1	ks_quality_p_value=0.896833	major_base=T	major_cov=599/567	major_frequency=8.800e-01	minor_base=C	minor_cov=87/72	new_cov=599/567	polymorphism_frequency=8.800e-01	polymorphism_score=252.1	prediction=consensus	ref_cov=87/72	total_cov=686/639
RA	292	.	Xen14_143	996	0	G	A	bias_e_value=4949630	bias_p_value=0.997199	consensus_score=2632.9	fisher_strand_p_value=0.927251	frequency=1	ks_quality_p_value=0.99875	major_base=A	major_cov=549/489	major_frequency=8.842e-01	minor_base=G	minor_cov=73/63	new_cov=549/489	polymorphism_frequency=8.842e-01	polymorphism_score=211.3	prediction=consensus	ref_cov=73/63	total_cov=623/553
RA	293	.	Xen14_143	1030	0	A	C	bias_e_value=4113150	bias_p_value=0.828674	consensus_score=2110.7	fisher_strand_p_value=0.481597	frequency=1	ks_quality_p_value=0.986481	major_base=C	major_cov=365/355	major_frequency=9.000e-01	minor_base=A	minor_cov=44/36	new_cov=365/355	polymorphism_frequency=9.000e-01	polymorphism_score=174.6	prediction=consensus	ref_cov=44/36	total_cov=409/391
RA	294	.	Xen14_147	768	0	C	T	bias_e_value=4641190	bias_p_value=0.935057	consensus_reject=FREQUENCY_CUTOFF	consensus_score=371.9	fisher_strand_p_value=0.802855	frequency=2.880e-01	ks_quality_p_value=0.824523	major_base=C	major_cov=110/110	major_frequency=7.120e-01	minor_base=T	minor_cov=46/43	new_cov=46/43	polymorphism_frequency=2.880e-01	polymorphism_score=173.3	prediction=polymorphism	ref_cov=110/110	total_cov=156/154
RA	295	.	Xen14_147	922	0	T	C	bias_e_value=3791920	bias_p_value=0.763954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.3	fisher_strand_p_value=0.397215	frequency=3.000e-01	ks_quality_p_value=1	major_base=T	major_cov=93/75	major_frequency=7.000e-01	minor_base=C	minor_cov=35/37	new_cov=35/37	polymorphism_frequency=3.000e-01	polymorphism_score=141.0	prediction=polymorphism	ref_cov=93/75	total_cov=128/113
RA	296	.	Xen14_147	930	0	C	T	bias_e_value=4071170	bias_p_value=0.820215	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.7	fisher_strand_p_value=0.4639	frequency=2.978e-01	ks_quality_p_value=1	major_base=C	major_cov=90/68	major_frequency=7.022e-01	minor_base=T	minor_cov=34/33	new_cov=34/33	polymorphism_frequency=2.978e-01	polymorphism_score=127.2	prediction=polymorphism	ref_cov=90/68	total_cov=124/101
RA	297	.	Xen14_151	18	0	C	T	bias_e_value=1840070	bias_p_value=0.370718	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=0.118254	frequency=2.456e-01	ks_quality_p_value=1	major_base=C	major_cov=22/21	major_frequency=7.544e-01	minor_base=T	minor_cov=11/3	new_cov=11/3	polymorphism_frequency=2.456e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=22/21	total_cov=33/24
RA	298	.	Xen14_151	933	0	C	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.0	fisher_strand_p_value=1	frequency=3.600e-01	ks_quality_p_value=1	major_base=C	major_cov=11/5	major_frequency=6.400e-01	minor_base=A	minor_cov=7/2	new_cov=7/2	polymorphism_frequency=3.600e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=11/5	total_cov=18/7
RA	299	.	Xen14_154	81	0	A	T	bias_e_value=2915990	bias_p_value=0.587482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.8	fisher_strand_p_value=0.577924	frequency=3.411e-01	ks_quality_p_value=0.421342	major_base=A	major_cov=46/39	major_frequency=6.589e-01	minor_base=T	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.411e-01	polymorphism_score=121.0	prediction=polymorphism	ref_cov=46/39	total_cov=67/62
RA	300	.	Xen14_154	84	0	C	T	bias_e_value=2739160	bias_p_value=0.551857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.2	fisher_strand_p_value=0.713683	frequency=3.284e-01	ks_quality_p_value=0.307104	major_base=C	major_cov=47/43	major_frequency=6.716e-01	minor_base=T	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=3.284e-01	polymorphism_score=87.4	prediction=polymorphism	ref_cov=47/43	total_cov=68/66
RA	301	.	Xen14_154	93	0	A	G	bias_e_value=858651	bias_p_value=0.172992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.0	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.0413229	major_base=A	major_cov=47/51	major_frequency=6.667e-01	minor_base=G	minor_cov=23/26	new_cov=23/26	polymorphism_frequency=3.333e-01	polymorphism_score=99.5	prediction=polymorphism	ref_cov=47/51	total_cov=70/77
RA	302	.	Xen14_154	105	0	G	A	bias_e_value=4777240	bias_p_value=0.962466	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.8	fisher_strand_p_value=0.738836	frequency=3.129e-01	ks_quality_p_value=1	major_base=G	major_cov=56/56	major_frequency=6.871e-01	minor_base=A	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=3.129e-01	polymorphism_score=97.4	prediction=polymorphism	ref_cov=56/56	total_cov=81/84
RA	303	.	Xen14_154	108	0	G	C	bias_e_value=2740210	bias_p_value=0.552068	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.0	fisher_strand_p_value=0.867242	frequency=3.000e-01	ks_quality_p_value=0.252887	major_base=G	major_cov=59/60	major_frequency=7.000e-01	minor_base=C	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=3.000e-01	polymorphism_score=154.9	prediction=polymorphism	ref_cov=59/60	total_cov=84/87
RA	304	.	Xen14_154	111	0	C	T	bias_e_value=3765600	bias_p_value=0.758652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.5	fisher_strand_p_value=0.73986	frequency=2.914e-01	ks_quality_p_value=0.529176	major_base=C	major_cov=63/61	major_frequency=7.086e-01	minor_base=T	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=2.914e-01	polymorphism_score=99.4	prediction=polymorphism	ref_cov=63/61	total_cov=87/88
RA	305	.	Xen14_154	114	0	T	C	bias_e_value=3240600	bias_p_value=0.652881	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.6	fisher_strand_p_value=0.620839	frequency=2.833e-01	ks_quality_p_value=0.472204	major_base=T	major_cov=67/62	major_frequency=7.167e-01	minor_base=C	minor_cov=24/27	new_cov=24/27	polymorphism_frequency=2.833e-01	polymorphism_score=97.1	prediction=polymorphism	ref_cov=67/62	total_cov=91/89
RA	306	.	Xen14_154	150	0	C	T	bias_e_value=4755780	bias_p_value=0.958143	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.3	fisher_strand_p_value=0.775714	frequency=2.863e-01	ks_quality_p_value=0.934604	major_base=C	major_cov=94/78	major_frequency=7.137e-01	minor_base=T	minor_cov=36/33	new_cov=36/33	polymorphism_frequency=2.863e-01	polymorphism_score=134.2	prediction=polymorphism	ref_cov=94/78	total_cov=130/111
RA	307	.	Xen14_154	153	0	T	A	bias_e_value=4416890	bias_p_value=0.889868	consensus_reject=FREQUENCY_CUTOFF	consensus_score=398.0	fisher_strand_p_value=0.56904	frequency=2.828e-01	ks_quality_p_value=1	major_base=T	major_cov=99/76	major_frequency=7.172e-01	minor_base=A	minor_cov=36/33	new_cov=36/33	polymorphism_frequency=2.828e-01	polymorphism_score=186.1	prediction=polymorphism	ref_cov=99/76	total_cov=135/109
RA	308	.	Xen14_154	162	0	C	T	bias_e_value=3716140	bias_p_value=0.748687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.3	fisher_strand_p_value=0.567023	frequency=2.753e-01	ks_quality_p_value=0.672002	major_base=C	major_cov=101/78	major_frequency=7.247e-01	minor_base=T	minor_cov=35/33	new_cov=35/33	polymorphism_frequency=2.753e-01	polymorphism_score=132.2	prediction=polymorphism	ref_cov=101/78	total_cov=136/112
RA	309	.	Xen14_154	474	0	T	C	bias_e_value=4506320	bias_p_value=0.907885	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.6	fisher_strand_p_value=0.602732	frequency=2.183e-01	ks_quality_p_value=1	major_base=T	major_cov=70/84	major_frequency=7.817e-01	minor_base=C	minor_cov=17/26	new_cov=17/26	polymorphism_frequency=2.183e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=70/84	total_cov=87/110
RA	310	.	Xen14_156	521	0	C	G	bias_e_value=478879	bias_p_value=0.0964793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=495.8	fisher_strand_p_value=0.867034	frequency=2.000e-01	ks_quality_p_value=0.0225494	major_base=C	major_cov=81/95	major_frequency=8.000e-01	minor_base=G	minor_cov=21/23	new_cov=21/23	polymorphism_frequency=2.000e-01	polymorphism_score=124.3	prediction=polymorphism	ref_cov=81/95	total_cov=102/118
RA	311	.	Xen14_156	569	0	A	G	bias_e_value=4565210	bias_p_value=0.919749	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.7	fisher_strand_p_value=0.627128	frequency=2.550e-01	ks_quality_p_value=1	major_base=A	major_cov=69/80	major_frequency=7.450e-01	minor_base=G	minor_cov=26/25	new_cov=26/25	polymorphism_frequency=2.550e-01	polymorphism_score=92.0	prediction=polymorphism	ref_cov=69/80	total_cov=95/105
RA	312	.	Xen14_156	574	0	C	A	bias_e_value=3361670	bias_p_value=0.677273	consensus_reject=FREQUENCY_CUTOFF	consensus_score=438.5	fisher_strand_p_value=0.521262	frequency=2.488e-01	ks_quality_p_value=0.601634	major_base=C	major_cov=73/81	major_frequency=7.512e-01	minor_base=A	minor_cov=27/24	new_cov=27/24	polymorphism_frequency=2.488e-01	polymorphism_score=128.6	prediction=polymorphism	ref_cov=73/81	total_cov=100/106
RA	313	.	Xen14_156	605	0	A	T	bias_e_value=576231	bias_p_value=0.116093	consensus_reject=FREQUENCY_CUTOFF	consensus_score=404.9	fisher_strand_p_value=0.0246944	frequency=2.700e-01	ks_quality_p_value=1	major_base=A	major_cov=59/87	major_frequency=7.300e-01	minor_base=T	minor_cov=32/22	new_cov=32/22	polymorphism_frequency=2.700e-01	polymorphism_score=143.1	prediction=polymorphism	ref_cov=59/87	total_cov=91/110
RA	314	.	Xen14_156	611	0	A	G	bias_e_value=186950	bias_p_value=0.0376647	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.0	fisher_strand_p_value=0.0104456	frequency=2.634e-01	ks_quality_p_value=0.592587	major_base=A	major_cov=60/91	major_frequency=7.366e-01	minor_base=G	minor_cov=33/21	new_cov=33/21	polymorphism_frequency=2.634e-01	polymorphism_score=99.2	prediction=polymorphism	ref_cov=60/91	total_cov=93/113
RA	315	.	Xen14_156	620	0	T	C	bias_e_value=1106680	bias_p_value=0.222962	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.7	fisher_strand_p_value=0.0579362	frequency=2.864e-01	ks_quality_p_value=1	major_base=T	major_cov=57/85	major_frequency=7.136e-01	minor_base=C	minor_cov=32/25	new_cov=32/25	polymorphism_frequency=2.864e-01	polymorphism_score=105.2	prediction=polymorphism	ref_cov=57/85	total_cov=89/111
RA	316	.	Xen14_156	623	0	C	T	bias_e_value=825294	bias_p_value=0.166271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.7	fisher_strand_p_value=0.0392307	frequency=2.872e-01	ks_quality_p_value=1	major_base=C	major_cov=54/85	major_frequency=7.128e-01	minor_base=T	minor_cov=31/25	new_cov=31/25	polymorphism_frequency=2.872e-01	polymorphism_score=103.4	prediction=polymorphism	ref_cov=54/85	total_cov=86/110
RA	317	.	Xen14_156	632	0	T	C	bias_e_value=1795260	bias_p_value=0.361689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.7	fisher_strand_p_value=0.11406	frequency=2.879e-01	ks_quality_p_value=1	major_base=T	major_cov=56/85	major_frequency=7.121e-01	minor_base=C	minor_cov=30/27	new_cov=30/27	polymorphism_frequency=2.879e-01	polymorphism_score=105.6	prediction=polymorphism	ref_cov=56/85	total_cov=86/112
RA	318	.	Xen14_156	650	0	T	C	bias_e_value=1407620	bias_p_value=0.283593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.4	fisher_strand_p_value=0.275521	frequency=2.906e-01	ks_quality_p_value=0.292568	major_base=T	major_cov=56/88	major_frequency=7.094e-01	minor_base=C	minor_cov=28/31	new_cov=28/31	polymorphism_frequency=2.906e-01	polymorphism_score=114.7	prediction=polymorphism	ref_cov=56/88	total_cov=84/120
RA	319	.	Xen14_156	653	0	G	A	bias_e_value=4043710	bias_p_value=0.814683	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.3	fisher_strand_p_value=0.456769	frequency=3.398e-01	ks_quality_p_value=1	major_base=G	major_cov=54/82	major_frequency=6.602e-01	minor_base=A	minor_cov=32/38	new_cov=32/38	polymorphism_frequency=3.398e-01	polymorphism_score=139.1	prediction=polymorphism	ref_cov=54/82	total_cov=86/120
RA	320	.	Xen14_156	704	0	C	T	bias_e_value=4936290	bias_p_value=0.99451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=0.897061	frequency=4.303e-01	ks_quality_p_value=1	major_base=C	major_cov=72/67	major_frequency=5.697e-01	minor_base=T	minor_cov=56/49	new_cov=56/49	polymorphism_frequency=4.303e-01	polymorphism_score=223.9	prediction=polymorphism	ref_cov=72/67	total_cov=128/116
RA	321	.	Xen14_156	785	0	T	C	bias_e_value=3071350	bias_p_value=0.618782	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.3	fisher_strand_p_value=0.864846	frequency=4.564e-01	ks_quality_p_value=0.308031	major_base=T	major_cov=52/29	major_frequency=5.436e-01	minor_base=C	minor_cov=42/26	new_cov=42/26	polymorphism_frequency=4.564e-01	polymorphism_score=146.9	prediction=polymorphism	ref_cov=52/29	total_cov=94/55
RA	322	.	Xen14_159	78	0	G	A	bias_e_value=1259850	bias_p_value=0.253821	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.1	fisher_strand_p_value=0.663644	frequency=4.767e-01	ks_quality_p_value=0.104163	major_base=G	major_cov=18/27	major_frequency=5.233e-01	minor_base=A	minor_cov=19/22	new_cov=19/22	polymorphism_frequency=4.767e-01	polymorphism_score=90.1	prediction=polymorphism	ref_cov=18/27	total_cov=37/49
RA	323	.	Xen14_159	80	0	G	A	bias_e_value=2438760	bias_p_value=0.491336	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=0.663644	frequency=4.767e-01	ks_quality_p_value=0.273584	major_base=G	major_cov=18/27	major_frequency=5.233e-01	minor_base=A	minor_cov=19/22	new_cov=19/22	polymorphism_frequency=4.767e-01	polymorphism_score=88.6	prediction=polymorphism	ref_cov=18/27	total_cov=37/49
RA	324	.	Xen14_159	91	0	T	G	bias_e_value=1624450	bias_p_value=0.327277	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.5	fisher_strand_p_value=0.433875	frequency=4.369e-01	ks_quality_p_value=0.227505	major_base=T	major_cov=25/33	major_frequency=5.631e-01	minor_base=G	minor_cov=23/22	new_cov=23/22	polymorphism_frequency=4.369e-01	polymorphism_score=134.9	prediction=polymorphism	ref_cov=25/33	total_cov=48/55
RA	325	.	Xen14_159	338	0	T	C	bias_e_value=1412930	bias_p_value=0.284662	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.4	fisher_strand_p_value=0.404104	frequency=4.497e-01	ks_quality_p_value=0.200526	major_base=T	major_cov=45/37	major_frequency=5.503e-01	minor_base=C	minor_cov=42/25	new_cov=42/25	polymorphism_frequency=4.497e-01	polymorphism_score=148.2	prediction=polymorphism	ref_cov=45/37	total_cov=87/62
RA	326	.	Xen14_159	582	0	T	C	bias_e_value=3660450	bias_p_value=0.737469	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.0	fisher_strand_p_value=0.369593	frequency=5.414e-01	ks_quality_p_value=1	major_base=C	major_cov=42/56	major_frequency=5.414e-01	minor_base=T	minor_cov=42/41	new_cov=42/56	polymorphism_frequency=5.414e-01	polymorphism_score=182.8	prediction=polymorphism	ref_cov=42/41	total_cov=84/97
RA	327	.	Xen14_16	39943	0	A	G	bias_e_value=0.102179	bias_p_value=2.05859e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.0	fisher_strand_p_value=9.4519e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=A	major_cov=19/44	major_frequency=7.326e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=19/44	total_cov=42/44
RA	328	.	Xen14_16	39947	0	C	G	bias_e_value=0.0390959	bias_p_value=7.87661e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.0	fisher_strand_p_value=3.45685e-10	frequency=2.750e-01	ks_quality_p_value=1	major_base=C	major_cov=15/43	major_frequency=7.250e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.750e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=15/43	total_cov=42/43
RA	329	.	Xen14_16	41593	0	A	C	bias_e_value=9.78639e-10	bias_p_value=1.97166e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.7	fisher_strand_p_value=4.82386e-18	frequency=3.137e-01	ks_quality_p_value=1	major_base=A	major_cov=10/60	major_frequency=6.863e-01	minor_base=C	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.137e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=10/60	total_cov=46/60
RA	330	.	Xen14_16	56948	0	G	C	bias_e_value=5.65233e-05	bias_p_value=1.13877e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.3	fisher_strand_p_value=3.84904e-13	frequency=2.110e-01	ks_quality_p_value=1	major_base=G	major_cov=69/17	major_frequency=7.890e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.110e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=69/17	total_cov=69/48
RA	331	.	Xen14_16	56949	0	T	C	bias_e_value=0.332534	bias_p_value=6.69955e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.8	fisher_strand_p_value=3.26154e-09	frequency=2.091e-01	ks_quality_p_value=1	major_base=T	major_cov=62/25	major_frequency=7.909e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.091e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=62/25	total_cov=64/47
RA	332	.	Xen14_17	26966	0	G	T	bias_e_value=4.82549e-12	bias_p_value=9.72188e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=391.7	fisher_strand_p_value=2.0993e-20	frequency=2.229e-01	ks_quality_p_value=1	major_base=G	major_cov=30/106	major_frequency=7.771e-01	minor_base=T	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.229e-01	polymorphism_score=30.0	prediction=polymorphism	ref_cov=30/106	total_cov=69/106
RA	333	.	Xen14_17	79607	0	A	G	bias_e_value=4557670	bias_p_value=0.918231	consensus_reject=FREQUENCY_CUTOFF	consensus_score=485.2	fisher_strand_p_value=0.623893	frequency=7.240e-01	ks_quality_p_value=1	major_base=G	major_cov=342/222	major_frequency=7.240e-01	minor_base=A	minor_cov=126/89	new_cov=342/222	polymorphism_frequency=7.240e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=126/89	total_cov=468/315
RA	334	.	Xen14_17	79624	0	T	G	bias_e_value=4197490	bias_p_value=0.845665	consensus_reject=FREQUENCY_CUTOFF	consensus_score=843.0	fisher_strand_p_value=0.498691	frequency=7.594e-01	ks_quality_p_value=1	major_base=G	major_cov=464/300	major_frequency=7.594e-01	minor_base=T	minor_cov=141/101	new_cov=464/300	polymorphism_frequency=7.594e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=141/101	total_cov=605/402
RA	335	.	Xen14_17	79625	0	G	A	bias_e_value=3630100	bias_p_value=0.731353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=888.1	fisher_strand_p_value=0.3635	frequency=7.639e-01	ks_quality_p_value=1	major_base=A	major_cov=466/301	major_frequency=7.639e-01	minor_base=G	minor_cov=136/101	new_cov=466/301	polymorphism_frequency=7.639e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=136/101	total_cov=604/402
RA	336	.	Xen14_17	79627	0	T	C	bias_e_value=4183300	bias_p_value=0.842806	consensus_reject=FREQUENCY_CUTOFF	consensus_score=892.9	fisher_strand_p_value=0.494606	frequency=7.647e-01	ks_quality_p_value=1	major_base=C	major_cov=465/302	major_frequency=7.647e-01	minor_base=T	minor_cov=137/99	new_cov=465/302	polymorphism_frequency=7.647e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=137/99	total_cov=604/401
RA	337	.	Xen14_17	79628	0	T	G	bias_e_value=3433420	bias_p_value=0.691728	consensus_reject=FREQUENCY_CUTOFF	consensus_score=854.3	fisher_strand_p_value=0.326293	frequency=7.610e-01	ks_quality_p_value=1	major_base=G	major_cov=465/299	major_frequency=7.610e-01	minor_base=T	minor_cov=137/103	new_cov=465/299	polymorphism_frequency=7.610e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=137/103	total_cov=603/404
RA	338	.	Xen14_17	79736	0	T	C	bias_e_value=1261450	bias_p_value=0.254144	consensus_score=8801.0	fisher_strand_p_value=0.0697077	frequency=1	ks_quality_p_value=0.993405	major_base=C	major_cov=1708/1760	major_frequency=9.158e-01	minor_base=T	minor_cov=140/179	new_cov=1708/1760	polymorphism_frequency=9.158e-01	polymorphism_score=inf	prediction=consensus	ref_cov=140/179	total_cov=1848/1939
RA	339	.	Xen14_17	79802	0	T	G	bias_e_value=11569.6	bias_p_value=0.00233092	consensus_score=10916.2	fisher_strand_p_value=0.000250893	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=1956/1774	major_frequency=9.251e-01	minor_base=T	minor_cov=125/177	new_cov=1956/1774	polymorphism_frequency=9.251e-01	polymorphism_score=inf	prediction=consensus	ref_cov=125/177	total_cov=2086/1958
RA	340	.	Xen14_17	80371	0	G	A	bias_e_value=979427	bias_p_value=0.197324	consensus_score=128.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.0491803	major_base=A	major_cov=35/25	major_frequency=9.836e-01	minor_base=G	minor_cov=1/0	new_cov=35/25	polymorphism_frequency=9.836e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=36/25
RA	341	.	Xen14_170	78	0	A	G	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.7	fisher_strand_p_value=1	frequency=4.014e-01	ks_quality_p_value=1	major_base=A	major_cov=52/33	major_frequency=5.986e-01	minor_base=G	minor_cov=35/22	new_cov=35/22	polymorphism_frequency=4.014e-01	polymorphism_score=119.7	prediction=polymorphism	ref_cov=52/33	total_cov=87/55
RA	342	.	Xen14_176	97	0	T	C	bias_e_value=970197	bias_p_value=0.195465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.7	fisher_strand_p_value=0.129313	frequency=2.517e-01	ks_quality_p_value=0.375557	major_base=T	major_cov=64/49	major_frequency=7.483e-01	minor_base=C	minor_cov=27/11	new_cov=27/11	polymorphism_frequency=2.517e-01	polymorphism_score=69.2	prediction=polymorphism	ref_cov=64/49	total_cov=91/60
RA	343	.	Xen14_176	208	0	T	C	bias_e_value=1890970	bias_p_value=0.380972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.2	fisher_strand_p_value=0.177168	frequency=2.831e-01	ks_quality_p_value=0.694841	major_base=T	major_cov=74/83	major_frequency=7.169e-01	minor_base=C	minor_cov=36/26	new_cov=36/26	polymorphism_frequency=2.831e-01	polymorphism_score=119.9	prediction=polymorphism	ref_cov=74/83	total_cov=110/110
RA	344	.	Xen14_176	353	0	C	T	bias_e_value=3140280	bias_p_value=0.63267	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.7	fisher_strand_p_value=0.629935	frequency=2.842e-01	ks_quality_p_value=0.43982	major_base=C	major_cov=64/72	major_frequency=7.158e-01	minor_base=T	minor_cov=23/31	new_cov=23/31	polymorphism_frequency=2.842e-01	polymorphism_score=104.5	prediction=polymorphism	ref_cov=64/72	total_cov=87/103
RA	345	.	Xen14_176	427	0	T	C	bias_e_value=2929470	bias_p_value=0.590199	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.3	fisher_strand_p_value=0.868829	frequency=2.825e-01	ks_quality_p_value=0.282486	major_base=T	major_cov=64/63	major_frequency=7.175e-01	minor_base=C	minor_cov=26/24	new_cov=26/24	polymorphism_frequency=2.825e-01	polymorphism_score=97.3	prediction=polymorphism	ref_cov=64/63	total_cov=90/87
RA	346	.	Xen14_176	454	0	C	G	bias_e_value=4445150	bias_p_value=0.895561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.1	fisher_strand_p_value=0.579302	frequency=2.721e-01	ks_quality_p_value=1	major_base=C	major_cov=55/52	major_frequency=7.279e-01	minor_base=G	minor_cov=23/17	new_cov=23/17	polymorphism_frequency=2.721e-01	polymorphism_score=116.6	prediction=polymorphism	ref_cov=55/52	total_cov=79/69
RA	347	.	Xen14_176	493	0	C	T	bias_e_value=1078650	bias_p_value=0.217315	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.0	fisher_strand_p_value=0.251047	frequency=2.427e-01	ks_quality_p_value=0.222928	major_base=C	major_cov=42/36	major_frequency=7.573e-01	minor_base=T	minor_cov=17/8	new_cov=17/8	polymorphism_frequency=2.427e-01	polymorphism_score=43.7	prediction=polymorphism	ref_cov=42/36	total_cov=59/44
RA	348	.	Xen14_18	586	0	A	C	bias_e_value=2528490	bias_p_value=0.509413	consensus_reject=FREQUENCY_CUTOFF	consensus_score=393.2	fisher_strand_p_value=0.760675	frequency=2.682e-01	ks_quality_p_value=0.252856	major_base=A	major_cov=87/74	major_frequency=7.318e-01	minor_base=C	minor_cov=30/29	new_cov=30/29	polymorphism_frequency=2.682e-01	polymorphism_score=163.7	prediction=polymorphism	ref_cov=87/74	total_cov=117/103
RA	349	.	Xen14_18	44420	0	C	T	bias_e_value=4.54659e-10	bias_p_value=9.15998e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.9	fisher_strand_p_value=2.19882e-18	frequency=3.629e-01	ks_quality_p_value=1	major_base=C	major_cov=20/59	major_frequency=6.371e-01	minor_base=T	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=3.629e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=20/59	total_cov=71/59
RA	350	.	Xen14_182	78	0	A	G	bias_e_value=3566790	bias_p_value=0.718599	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.1	fisher_strand_p_value=0.432872	frequency=4.549e-01	ks_quality_p_value=0.811111	major_base=A	major_cov=58/69	major_frequency=5.451e-01	minor_base=G	minor_cov=54/52	new_cov=54/52	polymorphism_frequency=4.549e-01	polymorphism_score=236.9	prediction=polymorphism	ref_cov=58/69	total_cov=112/121
RA	351	.	Xen14_182	96	0	A	G	bias_e_value=4603620	bias_p_value=0.927487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.7	fisher_strand_p_value=0.703009	frequency=4.094e-01	ks_quality_p_value=0.916357	major_base=A	major_cov=71/79	major_frequency=5.906e-01	minor_base=G	minor_cov=52/52	new_cov=52/52	polymorphism_frequency=4.094e-01	polymorphism_score=227.1	prediction=polymorphism	ref_cov=71/79	total_cov=125/131
RA	352	.	Xen14_182	145	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=337.5	fisher_strand_p_value=1	frequency=3.060e-01	ks_quality_p_value=1	major_base=T	major_cov=94/92	major_frequency=6.940e-01	minor_base=C	minor_cov=41/41	new_cov=41/41	polymorphism_frequency=3.060e-01	polymorphism_score=161.9	prediction=polymorphism	ref_cov=94/92	total_cov=135/133
RA	353	.	Xen14_182	146	0	A	G	bias_e_value=4963510	bias_p_value=0.999995	consensus_reject=FREQUENCY_CUTOFF	consensus_score=336.9	fisher_strand_p_value=1	frequency=3.060e-01	ks_quality_p_value=0.996715	major_base=A	major_cov=94/92	major_frequency=6.940e-01	minor_base=G	minor_cov=41/41	new_cov=41/41	polymorphism_frequency=3.060e-01	polymorphism_score=164.9	prediction=polymorphism	ref_cov=94/92	total_cov=135/133
RA	354	.	Xen14_182	175	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=439.1	fisher_strand_p_value=1	frequency=2.059e-01	ks_quality_p_value=1	major_base=T	major_cov=98/91	major_frequency=7.941e-01	minor_base=C	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=2.059e-01	polymorphism_score=82.6	prediction=polymorphism	ref_cov=98/91	total_cov=123/115
RA	355	.	Xen14_184	137	0	G	A	bias_e_value=4837170	bias_p_value=0.974541	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1988.0	fisher_strand_p_value=0.783008	frequency=2.238e-01	ks_quality_p_value=1	major_base=G	major_cov=437/510	major_frequency=7.762e-01	minor_base=A	minor_cov=129/144	new_cov=129/144	polymorphism_frequency=2.238e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=437/510	total_cov=567/654
RA	356	.	Xen14_185	394	0	C	T	bias_e_value=4878370	bias_p_value=0.982842	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.8	fisher_strand_p_value=0.82348	frequency=3.405e-01	ks_quality_p_value=0.996461	major_base=C	major_cov=143/101	major_frequency=6.595e-01	minor_base=T	minor_cov=76/50	new_cov=76/50	polymorphism_frequency=3.405e-01	polymorphism_score=260.5	prediction=polymorphism	ref_cov=143/101	total_cov=219/152
RA	357	.	Xen14_191	160	0	T	C	bias_e_value=3815240	bias_p_value=0.768654	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.1	fisher_strand_p_value=0.42109	frequency=6.921e-01	ks_quality_p_value=0.955474	major_base=C	major_cov=116/129	major_frequency=6.921e-01	minor_base=T	minor_cov=57/52	new_cov=116/129	polymorphism_frequency=6.921e-01	polymorphism_score=219.6	prediction=polymorphism	ref_cov=57/52	total_cov=173/181
RA	358	.	Xen14_191	220	0	A	G	bias_e_value=4779860	bias_p_value=0.962995	consensus_score=1144.3	fisher_strand_p_value=0.74059	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=257/277	major_frequency=8.463e-01	minor_base=A	minor_cov=49/48	new_cov=257/277	polymorphism_frequency=8.463e-01	polymorphism_score=155.8	prediction=consensus	ref_cov=49/48	total_cov=307/326
RA	359	.	Xen14_191	221	0	C	A	bias_e_value=4234580	bias_p_value=0.853137	consensus_score=1286.6	fisher_strand_p_value=0.509601	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=255/277	major_frequency=8.444e-01	minor_base=C	minor_cov=51/47	new_cov=255/277	polymorphism_frequency=8.444e-01	polymorphism_score=235.9	prediction=consensus	ref_cov=51/47	total_cov=307/325
RA	360	.	Xen14_191	226	0	A	G	bias_e_value=4651330	bias_p_value=0.937101	consensus_score=1134.9	fisher_strand_p_value=0.666972	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=253/278	major_frequency=8.389e-01	minor_base=A	minor_cov=51/51	new_cov=253/278	polymorphism_frequency=8.389e-01	polymorphism_score=167.9	prediction=consensus	ref_cov=51/51	total_cov=307/329
RA	361	.	Xen14_191	227	0	G	A	bias_e_value=4479250	bias_p_value=0.902431	consensus_score=1120.5	fisher_strand_p_value=0.592146	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=254/278	major_frequency=8.365e-01	minor_base=G	minor_cov=53/51	new_cov=254/278	polymorphism_frequency=8.365e-01	polymorphism_score=175.7	prediction=consensus	ref_cov=53/51	total_cov=307/329
RA	362	.	Xen14_191	229	0	C	T	bias_e_value=4651320	bias_p_value=0.937099	consensus_score=1124.9	fisher_strand_p_value=0.666967	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=254/277	major_frequency=8.375e-01	minor_base=C	minor_cov=52/51	new_cov=254/277	polymorphism_frequency=8.375e-01	polymorphism_score=169.6	prediction=consensus	ref_cov=52/51	total_cov=306/329
RA	363	.	Xen14_191	251	0	A	G	bias_e_value=3300270	bias_p_value=0.664902	consensus_score=1670.4	fisher_strand_p_value=0.316303	frequency=1	ks_quality_p_value=0.958241	major_base=G	major_cov=333/378	major_frequency=8.865e-01	minor_base=A	minor_cov=48/43	new_cov=333/378	polymorphism_frequency=8.865e-01	polymorphism_score=139.4	prediction=consensus	ref_cov=48/43	total_cov=381/421
RA	364	.	Xen14_191	268	0	A	G	bias_e_value=3913050	bias_p_value=0.788359	consensus_score=1802.1	fisher_strand_p_value=0.424651	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=333/403	major_frequency=8.954e-01	minor_base=A	minor_cov=43/43	new_cov=333/403	polymorphism_frequency=8.954e-01	polymorphism_score=124.6	prediction=consensus	ref_cov=43/43	total_cov=376/446
RA	365	.	Xen14_191	275	0	A	G	bias_e_value=4871980	bias_p_value=0.981555	consensus_score=1803.3	fisher_strand_p_value=0.820143	frequency=1	ks_quality_p_value=0.992733	major_base=G	major_cov=321/409	major_frequency=8.935e-01	minor_base=A	minor_cov=37/50	new_cov=321/409	polymorphism_frequency=8.935e-01	polymorphism_score=130.4	prediction=consensus	ref_cov=37/50	total_cov=358/459
RA	366	.	Xen14_191	292	0	T	C	bias_e_value=3327150	bias_p_value=0.670317	consensus_score=1938.1	fisher_strand_p_value=0.30766	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=341/418	major_frequency=8.961e-01	minor_base=T	minor_cov=34/54	new_cov=341/418	polymorphism_frequency=8.961e-01	polymorphism_score=128.6	prediction=consensus	ref_cov=34/54	total_cov=380/472
RA	367	.	Xen14_191	310	0	G	A	bias_e_value=2237490	bias_p_value=0.450785	consensus_score=1869.1	fisher_strand_p_value=0.158678	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=347/386	major_frequency=8.842e-01	minor_base=G	minor_cov=38/58	new_cov=347/386	polymorphism_frequency=8.842e-01	polymorphism_score=144.1	prediction=consensus	ref_cov=38/58	total_cov=386/444
RA	368	.	Xen14_191	334	0	T	A	bias_e_value=1540290	bias_p_value=0.310321	consensus_score=1808.6	fisher_strand_p_value=0.0915028	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=297/324	major_frequency=8.884e-01	minor_base=T	minor_cov=29/49	new_cov=297/324	polymorphism_frequency=8.884e-01	polymorphism_score=176.6	prediction=consensus	ref_cov=29/49	total_cov=328/374
RA	369	.	Xen14_191	358	0	G	A	bias_e_value=643779	bias_p_value=0.129702	consensus_score=1326.0	fisher_strand_p_value=0.0284446	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=250/272	major_frequency=8.832e-01	minor_base=G	minor_cov=23/46	new_cov=250/272	polymorphism_frequency=8.832e-01	polymorphism_score=106.1	prediction=consensus	ref_cov=23/46	total_cov=273/318
RA	370	.	Xen14_191	370	0	A	C	bias_e_value=184677	bias_p_value=0.0372066	consensus_score=1384.3	fisher_strand_p_value=0.00609998	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=239/234	major_frequency=8.874e-01	minor_base=A	minor_cov=19/41	new_cov=239/234	polymorphism_frequency=8.874e-01	polymorphism_score=130.2	prediction=consensus	ref_cov=19/41	total_cov=258/275
RA	371	.	Xen14_193	90	0	T	C	bias_e_value=2436270	bias_p_value=0.490834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.8	fisher_strand_p_value=0.35929	frequency=3.508e-01	ks_quality_p_value=0.504518	major_base=T	major_cov=77/47	major_frequency=6.492e-01	minor_base=C	minor_cov=37/30	new_cov=37/30	polymorphism_frequency=3.508e-01	polymorphism_score=138.7	prediction=polymorphism	ref_cov=77/47	total_cov=114/77
RA	372	.	Xen14_193	156	0	C	T	bias_e_value=3555120	bias_p_value=0.716246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.2	fisher_strand_p_value=0.348873	frequency=3.415e-01	ks_quality_p_value=0.999983	major_base=C	major_cov=97/117	major_frequency=6.585e-01	minor_base=T	minor_cov=57/54	new_cov=57/54	polymorphism_frequency=3.415e-01	polymorphism_score=228.2	prediction=polymorphism	ref_cov=97/117	total_cov=154/171
RA	373	.	Xen14_193	361	0	C	T	bias_e_value=1814780	bias_p_value=0.365623	consensus_reject=FREQUENCY_CUTOFF	consensus_score=459.4	fisher_strand_p_value=0.115886	frequency=2.696e-01	ks_quality_p_value=0.999944	major_base=C	major_cov=133/119	major_frequency=7.304e-01	minor_base=T	minor_cov=40/53	new_cov=40/53	polymorphism_frequency=2.696e-01	polymorphism_score=179.7	prediction=polymorphism	ref_cov=133/119	total_cov=173/172
RA	374	.	Xen14_195	206	0	C	T	bias_e_value=62806.7	bias_p_value=0.0126536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.0	fisher_strand_p_value=0.0335323	frequency=2.018e-01	ks_quality_p_value=0.0512239	major_base=C	major_cov=43/48	major_frequency=7.982e-01	minor_base=T	minor_cov=5/18	new_cov=5/18	polymorphism_frequency=2.018e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=43/48	total_cov=48/66
RA	375	.	Xen14_196	168	0	C	T	bias_e_value=3.27947e-05	bias_p_value=6.60713e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.6	fisher_strand_p_value=2.19149e-13	frequency=2.121e-01	ks_quality_p_value=1	major_base=C	major_cov=47/83	major_frequency=7.879e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.121e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=47/83	total_cov=83/83
RA	376	.	Xen14_202	78	0	A	G	bias_e_value=4585830	bias_p_value=0.923904	consensus_score=1228.5	fisher_strand_p_value=0.636172	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=241/224	major_frequency=9.136e-01	minor_base=A	minor_cov=25/19	new_cov=241/224	polymorphism_frequency=9.136e-01	polymorphism_score=58.0	prediction=consensus	ref_cov=25/19	total_cov=266/243
RA	377	.	Xen14_202	105	0	G	A	bias_e_value=2686530	bias_p_value=0.541253	consensus_score=1614.8	fisher_strand_p_value=0.21881	frequency=1	ks_quality_p_value=0.970073	major_base=A	major_cov=313/315	major_frequency=8.946e-01	minor_base=G	minor_cov=43/31	new_cov=313/315	polymorphism_frequency=8.946e-01	polymorphism_score=111.7	prediction=consensus	ref_cov=43/31	total_cov=356/346
RA	378	.	Xen14_202	109	0	A	T	bias_e_value=1428260	bias_p_value=0.287751	consensus_score=1816.9	fisher_strand_p_value=0.0922959	frequency=1	ks_quality_p_value=0.891334	major_base=T	major_cov=310/315	major_frequency=8.890e-01	minor_base=A	minor_cov=47/31	new_cov=310/315	polymorphism_frequency=8.890e-01	polymorphism_score=177.1	prediction=consensus	ref_cov=47/31	total_cov=359/346
RA	379	.	Xen14_202	126	0	C	G	bias_e_value=1480020	bias_p_value=0.298179	consensus_score=2098.1	fisher_strand_p_value=0.0877832	frequency=1	ks_quality_p_value=0.9852	major_base=G	major_cov=358/367	major_frequency=8.940e-01	minor_base=C	minor_cov=51/35	new_cov=358/367	polymorphism_frequency=8.940e-01	polymorphism_score=220.5	prediction=consensus	ref_cov=51/35	total_cov=410/402
RA	380	.	Xen14_202	134	0	C	T	bias_e_value=973231	bias_p_value=0.196076	consensus_score=1926.8	fisher_strand_p_value=0.0530239	frequency=1	ks_quality_p_value=0.919708	major_base=T	major_cov=379/373	major_frequency=8.974e-01	minor_base=C	minor_cov=53/33	new_cov=379/373	polymorphism_frequency=8.974e-01	polymorphism_score=127.7	prediction=consensus	ref_cov=53/33	total_cov=432/406
RA	381	.	Xen14_202	140	0	G	A	bias_e_value=2200360	bias_p_value=0.443304	consensus_score=1852.4	fisher_strand_p_value=0.154642	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=376/353	major_frequency=8.858e-01	minor_base=G	minor_cov=56/38	new_cov=376/353	polymorphism_frequency=8.858e-01	polymorphism_score=143.9	prediction=consensus	ref_cov=56/38	total_cov=432/392
RA	382	.	Xen14_202	191	0	G	T	bias_e_value=4466080	bias_p_value=0.899778	consensus_score=2376.8	fisher_strand_p_value=0.591396	frequency=1	ks_quality_p_value=0.992774	major_base=T	major_cov=449/369	major_frequency=8.930e-01	minor_base=G	minor_cov=57/41	new_cov=449/369	polymorphism_frequency=8.930e-01	polymorphism_score=228.7	prediction=consensus	ref_cov=57/41	total_cov=507/412
RA	383	.	Xen14_202	244	0	A	T	bias_e_value=3930450	bias_p_value=0.791865	consensus_score=2366.1	fisher_strand_p_value=0.429663	frequency=1	ks_quality_p_value=0.997917	major_base=T	major_cov=455/367	major_frequency=9.033e-01	minor_base=A	minor_cov=53/35	new_cov=455/367	polymorphism_frequency=9.033e-01	polymorphism_score=194.6	prediction=consensus	ref_cov=53/35	total_cov=508/408
RA	384	.	Xen14_202	259	0	A	G	bias_e_value=4865890	bias_p_value=0.980327	consensus_score=1946.2	fisher_strand_p_value=0.808315	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=404/342	major_frequency=9.098e-01	minor_base=A	minor_cov=39/35	new_cov=404/342	polymorphism_frequency=9.098e-01	polymorphism_score=102.3	prediction=consensus	ref_cov=39/35	total_cov=443/377
RA	385	.	Xen14_202	260	0	A	G	bias_e_value=4939280	bias_p_value=0.995113	consensus_score=1939.5	fisher_strand_p_value=0.902777	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=403/342	major_frequency=9.096e-01	minor_base=A	minor_cov=39/35	new_cov=403/342	polymorphism_frequency=9.096e-01	polymorphism_score=100.1	prediction=consensus	ref_cov=39/35	total_cov=442/377
RA	386	.	Xen14_202	266	0	C	T	bias_e_value=4938650	bias_p_value=0.994985	consensus_score=1929.2	fisher_strand_p_value=0.90154	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=403/343	major_frequency=9.120e-01	minor_base=C	minor_cov=40/32	new_cov=403/343	polymorphism_frequency=9.120e-01	polymorphism_score=98.6	prediction=consensus	ref_cov=40/32	total_cov=443/375
RA	387	.	Xen14_202	267	0	A	C	bias_e_value=4860790	bias_p_value=0.979299	consensus_score=2148.1	fisher_strand_p_value=0.803547	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=403/342	major_frequency=9.141e-01	minor_base=A	minor_cov=39/31	new_cov=403/342	polymorphism_frequency=9.141e-01	polymorphism_score=142.8	prediction=consensus	ref_cov=39/31	total_cov=443/374
RA	388	.	Xen14_202	294	0	C	A	bias_e_value=4854970	bias_p_value=0.978128	consensus_score=2239.8	fisher_strand_p_value=0.798274	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=427/392	major_frequency=9.254e-01	minor_base=C	minor_cov=33/33	new_cov=427/392	polymorphism_frequency=9.254e-01	polymorphism_score=138.2	prediction=consensus	ref_cov=33/33	total_cov=460/427
RA	389	.	Xen14_202	314	0	T	A	bias_e_value=4431220	bias_p_value=0.892754	consensus_score=1774.1	fisher_strand_p_value=0.58083	frequency=1	ks_quality_p_value=0.988586	major_base=A	major_cov=323/341	major_frequency=9.222e-01	minor_base=T	minor_cov=25/31	new_cov=323/341	polymorphism_frequency=9.222e-01	polymorphism_score=116.7	prediction=consensus	ref_cov=25/31	total_cov=349/373
RA	390	.	Xen14_202	320	0	A	G	bias_e_value=4433090	bias_p_value=0.89313	consensus_score=1403.5	fisher_strand_p_value=0.57488	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=282/307	major_frequency=9.146e-01	minor_base=A	minor_cov=24/31	new_cov=282/307	polymorphism_frequency=9.146e-01	polymorphism_score=72.8	prediction=consensus	ref_cov=24/31	total_cov=306/338
RA	391	.	Xen14_202	323	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_score=1404.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=278/307	major_frequency=9.213e-01	minor_base=G	minor_cov=24/26	new_cov=278/307	polymorphism_frequency=9.213e-01	polymorphism_score=65.0	prediction=consensus	ref_cov=24/26	total_cov=304/333
RA	392	.	Xen14_202	332	0	C	T	bias_e_value=4555040	bias_p_value=0.917699	consensus_score=1254.1	fisher_strand_p_value=0.643885	frequency=1	ks_quality_p_value=0.967204	major_base=T	major_cov=240/289	major_frequency=9.200e-01	minor_base=C	minor_cov=23/23	new_cov=240/289	polymorphism_frequency=9.200e-01	polymorphism_score=60.1	prediction=consensus	ref_cov=23/23	total_cov=263/314
RA	393	.	Xen14_202	335	0	T	A	bias_e_value=4916980	bias_p_value=0.99062	consensus_score=1382.0	fisher_strand_p_value=0.875069	frequency=1	ks_quality_p_value=0.989857	major_base=A	major_cov=240/290	major_frequency=9.250e-01	minor_base=T	minor_cov=20/23	new_cov=240/290	polymorphism_frequency=9.250e-01	polymorphism_score=87.4	prediction=consensus	ref_cov=20/23	total_cov=260/314
RA	394	.	Xen14_202	341	0	A	G	bias_e_value=3101280	bias_p_value=0.624813	consensus_score=1053.2	fisher_strand_p_value=0.330688	frequency=1	ks_quality_p_value=0.819469	major_base=G	major_cov=184/273	major_frequency=9.140e-01	minor_base=A	minor_cov=21/22	new_cov=184/273	polymorphism_frequency=9.140e-01	polymorphism_score=58.9	prediction=consensus	ref_cov=21/22	total_cov=207/296
RA	395	.	Xen14_202	344	0	T	C	bias_e_value=4528050	bias_p_value=0.912262	consensus_score=1076.9	fisher_strand_p_value=0.611504	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=187/274	major_frequency=9.238e-01	minor_base=T	minor_cov=17/21	new_cov=187/274	polymorphism_frequency=9.238e-01	polymorphism_score=45.1	prediction=consensus	ref_cov=17/21	total_cov=204/295
RA	396	.	Xen14_205	259	0	T	A	bias_e_value=4154020	bias_p_value=0.836907	consensus_reject=FREQUENCY_CUTOFF	consensus_score=2012.5	fisher_strand_p_value=0.486326	frequency=2.514e-01	ks_quality_p_value=1	major_base=T	major_cov=388/437	major_frequency=7.486e-01	minor_base=A	minor_cov=123/154	new_cov=123/154	polymorphism_frequency=2.514e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=388/437	total_cov=513/591
RA	397	.	Xen14_205	264	0	A	T	bias_e_value=3805650	bias_p_value=0.766722	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1977.0	fisher_strand_p_value=0.400224	frequency=2.514e-01	ks_quality_p_value=1	major_base=A	major_cov=391/419	major_frequency=7.486e-01	minor_base=T	minor_cov=123/149	new_cov=123/149	polymorphism_frequency=2.514e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=391/419	total_cov=516/568
RA	398	.	Xen14_25	61736	0	T	C	bias_e_value=13.4362	bias_p_value=2.70699e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.5	fisher_strand_p_value=1.62768e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=31/7	major_frequency=7.451e-01	minor_base=C	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=31/7	total_cov=31/20
RA	399	.	Xen14_27	70010	0	A	T	bias_e_value=383015	bias_p_value=0.0771658	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.5	fisher_strand_p_value=0.0447336	frequency=2.914e-01	ks_quality_p_value=0.330909	major_base=A	major_cov=75/49	major_frequency=7.086e-01	minor_base=T	minor_cov=22/29	new_cov=22/29	polymorphism_frequency=2.914e-01	polymorphism_score=137.2	prediction=polymorphism	ref_cov=75/49	total_cov=97/79
RA	400	.	Xen14_27	70100	0	C	T	bias_e_value=4551660	bias_p_value=0.917019	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.6	fisher_strand_p_value=0.621335	frequency=5.019e-01	ks_quality_p_value=1	major_base=T	major_cov=63/69	major_frequency=5.019e-01	minor_base=C	minor_cov=58/73	new_cov=63/69	polymorphism_frequency=5.019e-01	polymorphism_score=296.9	prediction=polymorphism	ref_cov=58/73	total_cov=121/142
RA	401	.	Xen14_27	70319	0	C	T	bias_e_value=1177350	bias_p_value=0.237201	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.5	fisher_strand_p_value=0.0630106	frequency=4.629e-01	ks_quality_p_value=1	major_base=C	major_cov=66/57	major_frequency=5.371e-01	minor_base=T	minor_cov=43/63	new_cov=43/63	polymorphism_frequency=4.629e-01	polymorphism_score=233.2	prediction=polymorphism	ref_cov=66/57	total_cov=109/120
RA	402	.	Xen14_27	70334	0	A	G	bias_e_value=3544990	bias_p_value=0.714206	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.6	fisher_strand_p_value=0.44332	frequency=4.675e-01	ks_quality_p_value=0.782581	major_base=A	major_cov=69/62	major_frequency=5.325e-01	minor_base=G	minor_cov=54/61	new_cov=54/61	polymorphism_frequency=4.675e-01	polymorphism_score=261.3	prediction=polymorphism	ref_cov=69/62	total_cov=123/123
RA	403	.	Xen14_27	70510	0	A	G	bias_e_value=3063410	bias_p_value=0.617183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.0	fisher_strand_p_value=0.265193	frequency=4.695e-01	ks_quality_p_value=1	major_base=A	major_cov=75/64	major_frequency=5.305e-01	minor_base=G	minor_cov=57/66	new_cov=57/66	polymorphism_frequency=4.695e-01	polymorphism_score=274.5	prediction=polymorphism	ref_cov=75/64	total_cov=132/130
RA	404	.	Xen14_27	70545	0	G	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.6	fisher_strand_p_value=1	frequency=4.688e-01	ks_quality_p_value=1	major_base=G	major_cov=71/65	major_frequency=5.312e-01	minor_base=T	minor_cov=63/57	new_cov=63/57	polymorphism_frequency=4.688e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/65	total_cov=134/122
RA	405	.	Xen14_27	70578	0	C	T	bias_e_value=4195050	bias_p_value=0.845174	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.1	fisher_strand_p_value=0.61912	frequency=4.789e-01	ks_quality_p_value=0.804346	major_base=C	major_cov=65/71	major_frequency=5.211e-01	minor_base=T	minor_cov=55/70	new_cov=55/70	polymorphism_frequency=4.789e-01	polymorphism_score=283.5	prediction=polymorphism	ref_cov=65/71	total_cov=120/141
RA	406	.	Xen14_27	70598	0	G	T	bias_e_value=4166730	bias_p_value=0.839468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.5	fisher_strand_p_value=0.519766	frequency=4.472e-01	ks_quality_p_value=0.942535	major_base=G	major_cov=63/73	major_frequency=5.528e-01	minor_base=T	minor_cov=46/64	new_cov=46/64	polymorphism_frequency=4.472e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=63/73	total_cov=109/137
RA	407	.	Xen14_27	70661	0	C	T	bias_e_value=4817930	bias_p_value=0.970665	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.9	fisher_strand_p_value=0.774973	frequency=5.097e-01	ks_quality_p_value=0.990705	major_base=T	major_cov=39/66	major_frequency=5.097e-01	minor_base=C	minor_cov=40/61	new_cov=39/66	polymorphism_frequency=5.097e-01	polymorphism_score=231.5	prediction=polymorphism	ref_cov=40/61	total_cov=79/127
RA	408	.	Xen14_27	70693	0	T	A	bias_e_value=4963150	bias_p_value=0.999922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.7	fisher_strand_p_value=1	frequency=5.429e-01	ks_quality_p_value=0.987547	major_base=A	major_cov=48/66	major_frequency=5.429e-01	minor_base=T	minor_cov=41/55	new_cov=48/66	polymorphism_frequency=5.429e-01	polymorphism_score=285.8	prediction=polymorphism	ref_cov=41/55	total_cov=90/121
RA	409	.	Xen14_27	70865	0	T	C	bias_e_value=1445570	bias_p_value=0.291238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.6	fisher_strand_p_value=0.244371	frequency=5.440e-01	ks_quality_p_value=0.342379	major_base=C	major_cov=47/58	major_frequency=5.440e-01	minor_base=T	minor_cov=32/56	new_cov=47/58	polymorphism_frequency=5.440e-01	polymorphism_score=194.7	prediction=polymorphism	ref_cov=32/56	total_cov=79/114
RA	410	.	Xen14_27	71183	0	A	G	bias_e_value=1608930	bias_p_value=0.324151	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	fisher_strand_p_value=0.291978	frequency=4.964e-01	ks_quality_p_value=0.333459	major_base=A	major_cov=22/48	major_frequency=5.036e-01	minor_base=G	minor_cov=28/41	new_cov=28/41	polymorphism_frequency=4.964e-01	polymorphism_score=156.8	prediction=polymorphism	ref_cov=22/48	total_cov=51/89
RA	411	.	Xen14_28	78	0	T	C	bias_e_value=2762920	bias_p_value=0.556642	consensus_score=218.8	fisher_strand_p_value=0.222342	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=54/42	major_frequency=8.276e-01	minor_base=T	minor_cov=8/12	new_cov=54/42	polymorphism_frequency=8.276e-01	polymorphism_score=29.5	prediction=consensus	ref_cov=8/12	total_cov=63/55
RA	412	.	Xen14_28	132	0	G	C	bias_e_value=4331110	bias_p_value=0.872586	consensus_reject=FREQUENCY_CUTOFF	consensus_score=428.4	fisher_strand_p_value=1	frequency=7.723e-01	ks_quality_p_value=0.539749	major_base=C	major_cov=84/72	major_frequency=7.723e-01	minor_base=G	minor_cov=25/21	new_cov=84/72	polymorphism_frequency=7.723e-01	polymorphism_score=132.5	prediction=polymorphism	ref_cov=25/21	total_cov=109/94
RA	413	.	Xen14_28	207	0	T	C	bias_e_value=3132560	bias_p_value=0.631114	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.7	fisher_strand_p_value=0.275848	frequency=6.749e-01	ks_quality_p_value=1	major_base=C	major_cov=83/81	major_frequency=6.749e-01	minor_base=T	minor_cov=46/33	new_cov=83/81	polymorphism_frequency=6.749e-01	polymorphism_score=159.5	prediction=polymorphism	ref_cov=46/33	total_cov=129/114
RA	414	.	Xen14_28	233	0	A	G	bias_e_value=1612510	bias_p_value=0.32487	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.6	fisher_strand_p_value=0.0976718	frequency=6.923e-01	ks_quality_p_value=1	major_base=G	major_cov=76/95	major_frequency=6.923e-01	minor_base=A	minor_cov=43/33	new_cov=76/95	polymorphism_frequency=6.923e-01	polymorphism_score=149.6	prediction=polymorphism	ref_cov=43/33	total_cov=119/128
RA	415	.	Xen14_28	252	0	C	T	bias_e_value=2117710	bias_p_value=0.426653	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.7	fisher_strand_p_value=0.146452	frequency=6.892e-01	ks_quality_p_value=0.995945	major_base=T	major_cov=67/86	major_frequency=6.892e-01	minor_base=C	minor_cov=38/31	new_cov=67/86	polymorphism_frequency=6.892e-01	polymorphism_score=138.7	prediction=polymorphism	ref_cov=38/31	total_cov=106/117
RA	416	.	Xen14_28	276	0	T	C	bias_e_value=602316	bias_p_value=0.121348	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.1	fisher_strand_p_value=0.0261459	frequency=7.162e-01	ks_quality_p_value=0.999213	major_base=C	major_cov=63/101	major_frequency=7.162e-01	minor_base=T	minor_cov=36/29	new_cov=63/101	polymorphism_frequency=7.162e-01	polymorphism_score=126.1	prediction=polymorphism	ref_cov=36/29	total_cov=99/131
RA	417	.	Xen14_29	31773	0	C	G	bias_e_value=1.0573e-05	bias_p_value=2.13012e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.9	fisher_strand_p_value=6.80137e-14	frequency=4.423e-01	ks_quality_p_value=1	major_base=C	major_cov=1/28	major_frequency=5.577e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=4.423e-01	polymorphism_score=42.6	prediction=polymorphism	ref_cov=1/28	total_cov=27/28
RA	418	.	Xen14_3	23263	0	A	G	bias_e_value=2.16558e-09	bias_p_value=4.36297e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.5	fisher_strand_p_value=1.08915e-17	frequency=2.358e-01	ks_quality_p_value=1	major_base=A	major_cov=8/73	major_frequency=7.642e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.358e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=8/73	total_cov=33/73
RA	419	.	Xen14_3	81286	0	A	C	bias_e_value=0.00688896	bias_p_value=1.38791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=5.64235e-11	frequency=2.941e-01	ks_quality_p_value=1	major_base=A	major_cov=25/47	major_frequency=7.059e-01	minor_base=C	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.941e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=25/47	total_cov=55/48
RA	420	.	Xen14_3	166143	0	G	A	bias_e_value=2530360	bias_p_value=0.509789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=0.608364	frequency=2.264e-01	ks_quality_p_value=0.316537	major_base=G	major_cov=60/22	major_frequency=7.736e-01	minor_base=A	minor_cov=16/8	new_cov=16/8	polymorphism_frequency=2.264e-01	polymorphism_score=40.5	prediction=polymorphism	ref_cov=60/22	total_cov=76/30
RA	421	.	Xen14_3	166152	0	T	C	bias_e_value=3573770	bias_p_value=0.720005	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.4	fisher_strand_p_value=0.662128	frequency=2.927e-01	ks_quality_p_value=0.532304	major_base=T	major_cov=64/23	major_frequency=7.073e-01	minor_base=C	minor_cov=25/11	new_cov=25/11	polymorphism_frequency=2.927e-01	polymorphism_score=69.0	prediction=polymorphism	ref_cov=64/23	total_cov=89/34
RA	422	.	Xen14_3	166234	0	G	A	bias_e_value=3564140	bias_p_value=0.718064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.5	fisher_strand_p_value=0.350597	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=87/29	major_frequency=8.000e-01	minor_base=A	minor_cov=19/10	new_cov=19/10	polymorphism_frequency=2.000e-01	polymorphism_score=46.7	prediction=polymorphism	ref_cov=87/29	total_cov=106/39
RA	423	.	Xen14_30	42888	0	G	A	bias_e_value=0.00206408	bias_p_value=4.15849e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.2	fisher_strand_p_value=1.6085e-11	frequency=3.168e-01	ks_quality_p_value=1	major_base=G	major_cov=46/23	major_frequency=6.832e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.168e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=46/23	total_cov=46/63
RA	424	.	Xen14_32	20630	0	C	G	bias_e_value=132.262	bias_p_value=2.66468e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.8	fisher_strand_p_value=1.87852e-06	frequency=2.121e-01	ks_quality_p_value=1	major_base=C	major_cov=16/36	major_frequency=7.879e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.121e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=16/36	total_cov=39/36
RA	425	.	Xen14_32	20632	0	C	T	bias_e_value=0.019377	bias_p_value=3.90388e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=1.65987e-10	frequency=3.385e-01	ks_quality_p_value=1	major_base=C	major_cov=9/34	major_frequency=6.615e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.385e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=9/34	total_cov=38/34
RA	426	.	Xen14_34	34656	0	G	T	bias_e_value=7.25858e-05	bias_p_value=1.46238e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.8	fisher_strand_p_value=4.98648e-13	frequency=2.031e-01	ks_quality_p_value=1	major_base=G	major_cov=26/76	major_frequency=7.969e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.031e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=26/76	total_cov=52/77
RA	427	.	Xen14_37	179	0	C	T	bias_e_value=2689760	bias_p_value=0.541904	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.212681	major_base=C	major_cov=12/18	major_frequency=5.000e-01	minor_base=T	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=5.000e-01	polymorphism_score=62.8	prediction=polymorphism	ref_cov=12/18	total_cov=25/35
RA	428	.	Xen14_37	190	0	T	C	bias_e_value=4105620	bias_p_value=0.827156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=1	frequency=3.929e-01	ks_quality_p_value=0.473053	major_base=T	major_cov=16/18	major_frequency=6.071e-01	minor_base=C	minor_cov=11/11	new_cov=11/11	polymorphism_frequency=3.929e-01	polymorphism_score=40.5	prediction=polymorphism	ref_cov=16/18	total_cov=27/29
RA	429	.	Xen14_37	195	0	T	G	bias_e_value=4843690	bias_p_value=0.975855	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.4	fisher_strand_p_value=0.788453	frequency=3.509e-01	ks_quality_p_value=1	major_base=T	major_cov=20/17	major_frequency=6.491e-01	minor_base=G	minor_cov=10/10	new_cov=10/10	polymorphism_frequency=3.509e-01	polymorphism_score=51.8	prediction=polymorphism	ref_cov=20/17	total_cov=30/27
RA	430	.	Xen14_37	196	0	T	A	bias_e_value=2531050	bias_p_value=0.509928	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.9	fisher_strand_p_value=0.573113	frequency=3.273e-01	ks_quality_p_value=0.336153	major_base=T	major_cov=20/17	major_frequency=6.727e-01	minor_base=A	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=3.273e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=20/17	total_cov=30/27
RA	431	.	Xen14_37	21953	0	C	G	bias_e_value=0.398577	bias_p_value=8.03011e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.6	fisher_strand_p_value=3.94588e-09	frequency=2.051e-01	ks_quality_p_value=1	major_base=C	major_cov=13/49	major_frequency=7.949e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.051e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=13/49	total_cov=30/49
RA	432	.	Xen14_37	42807	0	A	.	bias_e_value=3590720	bias_p_value=0.723419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.5	fisher_strand_p_value=0.822622	frequency=2.947e-01	ks_quality_p_value=0.432448	major_base=A	major_cov=33/34	major_frequency=7.053e-01	minor_base=.	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=2.947e-01	polymorphism_score=92.7	prediction=polymorphism	ref_cov=33/34	total_cov=48/47
RA	433	.	Xen14_38	15362	0	T	A	bias_e_value=3338540	bias_p_value=0.672613	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.9	fisher_strand_p_value=0.309613	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=57/67	major_frequency=5.000e-01	minor_base=A	minor_cov=66/58	new_cov=66/58	polymorphism_frequency=5.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=57/67	total_cov=123/129
RA	434	.	Xen14_38	15487	0	C	A	bias_e_value=4016260	bias_p_value=0.809154	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.2	fisher_strand_p_value=0.449781	frequency=4.769e-01	ks_quality_p_value=1	major_base=C	major_cov=53/83	major_frequency=5.231e-01	minor_base=A	minor_cov=55/69	new_cov=55/69	polymorphism_frequency=4.769e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=53/83	total_cov=109/152
RA	435	.	Xen14_38	15801	0	A	G	bias_e_value=3968210	bias_p_value=0.799471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.0	fisher_strand_p_value=0.450245	frequency=5.294e-01	ks_quality_p_value=0.972499	major_base=G	major_cov=63/72	major_frequency=5.294e-01	minor_base=A	minor_cov=50/70	new_cov=63/72	polymorphism_frequency=5.294e-01	polymorphism_score=272.2	prediction=polymorphism	ref_cov=50/70	total_cov=113/142
RA	436	.	Xen14_38	15816	0	A	T	bias_e_value=4923190	bias_p_value=0.991871	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.4	fisher_strand_p_value=0.899142	frequency=5.198e-01	ks_quality_p_value=0.973411	major_base=T	major_cov=56/75	major_frequency=5.198e-01	minor_base=A	minor_cov=53/68	new_cov=56/75	polymorphism_frequency=5.198e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=53/68	total_cov=109/143
RA	437	.	Xen14_38	15848	0	G	A	bias_e_value=4858780	bias_p_value=0.978894	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.7	fisher_strand_p_value=0.801708	frequency=4.902e-01	ks_quality_p_value=1	major_base=G	major_cov=61/69	major_frequency=5.098e-01	minor_base=A	minor_cov=56/69	new_cov=56/69	polymorphism_frequency=4.902e-01	polymorphism_score=282.8	prediction=polymorphism	ref_cov=61/69	total_cov=117/138
RA	438	.	Xen14_38	15864	0	C	T	bias_e_value=4936080	bias_p_value=0.994469	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.6	fisher_strand_p_value=0.896684	frequency=4.545e-01	ks_quality_p_value=1	major_base=C	major_cov=58/74	major_frequency=5.455e-01	minor_base=T	minor_cov=47/63	new_cov=47/63	polymorphism_frequency=4.545e-01	polymorphism_score=242.9	prediction=polymorphism	ref_cov=58/74	total_cov=105/137
RA	439	.	Xen14_38	15866	0	T	G	bias_e_value=4701570	bias_p_value=0.947221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.3	fisher_strand_p_value=0.69801	frequency=4.545e-01	ks_quality_p_value=0.993137	major_base=T	major_cov=60/72	major_frequency=5.455e-01	minor_base=G	minor_cov=47/63	new_cov=47/63	polymorphism_frequency=4.545e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=60/72	total_cov=107/135
RA	440	.	Xen14_38	15869	0	A	G	bias_e_value=4931840	bias_p_value=0.993613	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=1	frequency=4.664e-01	ks_quality_p_value=0.889127	major_base=A	major_cov=56/71	major_frequency=5.336e-01	minor_base=G	minor_cov=48/63	new_cov=48/63	polymorphism_frequency=4.664e-01	polymorphism_score=251.0	prediction=polymorphism	ref_cov=56/71	total_cov=104/134
RA	441	.	Xen14_38	15879	0	C	T	bias_e_value=4860760	bias_p_value=0.979294	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.5	fisher_strand_p_value=0.803526	frequency=4.809e-01	ks_quality_p_value=1	major_base=C	major_cov=61/75	major_frequency=5.191e-01	minor_base=T	minor_cov=54/72	new_cov=54/72	polymorphism_frequency=4.809e-01	polymorphism_score=283.4	prediction=polymorphism	ref_cov=61/75	total_cov=116/147
RA	442	.	Xen14_38	16010	0	C	T	bias_e_value=2005950	bias_p_value=0.404137	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.3	fisher_strand_p_value=0.134402	frequency=4.706e-01	ks_quality_p_value=1	major_base=C	major_cov=44/73	major_frequency=5.294e-01	minor_base=T	minor_cov=50/54	new_cov=50/54	polymorphism_frequency=4.706e-01	polymorphism_score=232.3	prediction=polymorphism	ref_cov=44/73	total_cov=94/127
RA	443	.	Xen14_38	16016	0	T	C	bias_e_value=685963	bias_p_value=0.1382	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=0.0355657	frequency=4.834e-01	ks_quality_p_value=0.867691	major_base=T	major_cov=37/72	major_frequency=5.166e-01	minor_base=C	minor_cov=50/52	new_cov=50/52	polymorphism_frequency=4.834e-01	polymorphism_score=233.8	prediction=polymorphism	ref_cov=37/72	total_cov=87/124
RA	444	.	Xen14_38	16020	0	G	A	bias_e_value=704607	bias_p_value=0.141957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.8	fisher_strand_p_value=0.032921	frequency=4.680e-01	ks_quality_p_value=0.970364	major_base=G	major_cov=38/70	major_frequency=5.320e-01	minor_base=A	minor_cov=48/47	new_cov=48/47	polymorphism_frequency=4.680e-01	polymorphism_score=212.4	prediction=polymorphism	ref_cov=38/70	total_cov=86/117
RA	445	.	Xen14_38	16025	0	G	T	bias_e_value=48944.8	bias_p_value=0.00986086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.6	fisher_strand_p_value=0.0152689	frequency=4.750e-01	ks_quality_p_value=0.0843706	major_base=G	major_cov=36/69	major_frequency=5.250e-01	minor_base=T	minor_cov=49/46	new_cov=49/46	polymorphism_frequency=4.750e-01	polymorphism_score=281.7	prediction=polymorphism	ref_cov=36/69	total_cov=85/115
RA	446	.	Xen14_38	16124	0	G	A	bias_e_value=2235020	bias_p_value=0.450287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.3	fisher_strand_p_value=1	frequency=2.538e-01	ks_quality_p_value=0.158408	major_base=G	major_cov=69/28	major_frequency=7.462e-01	minor_base=A	minor_cov=23/10	new_cov=23/10	polymorphism_frequency=2.538e-01	polymorphism_score=60.2	prediction=polymorphism	ref_cov=69/28	total_cov=92/38
RA	447	.	Xen14_38	48227	0	A	G	bias_e_value=4196140	bias_p_value=0.845393	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.2	fisher_strand_p_value=0.554767	frequency=4.931e-01	ks_quality_p_value=0.898218	major_base=A	major_cov=81/66	major_frequency=5.069e-01	minor_base=G	minor_cov=84/59	new_cov=84/59	polymorphism_frequency=4.931e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=81/66	total_cov=165/125
RA	448	.	Xen14_38	48274	0	A	C	bias_e_value=1176670	bias_p_value=0.237063	consensus_reject=FREQUENCY_CUTOFF	consensus_score=338.6	fisher_strand_p_value=0.27505	frequency=2.229e-01	ks_quality_p_value=0.228906	major_base=A	major_cov=68/68	major_frequency=7.771e-01	minor_base=C	minor_cov=24/15	new_cov=24/15	polymorphism_frequency=2.229e-01	polymorphism_score=100.7	prediction=polymorphism	ref_cov=68/68	total_cov=92/83
RA	449	.	Xen14_38	48276	0	T	C	bias_e_value=250358	bias_p_value=0.0504394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.9	fisher_strand_p_value=0.208189	frequency=2.191e-01	ks_quality_p_value=0.0422581	major_base=T	major_cov=69/70	major_frequency=7.809e-01	minor_base=C	minor_cov=24/15	new_cov=24/15	polymorphism_frequency=2.191e-01	polymorphism_score=69.8	prediction=polymorphism	ref_cov=69/70	total_cov=93/85
RA	450	.	Xen14_38	48277	0	T	C	bias_e_value=1211900	bias_p_value=0.244161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.6	fisher_strand_p_value=0.208189	frequency=2.191e-01	ks_quality_p_value=0.314842	major_base=T	major_cov=69/70	major_frequency=7.809e-01	minor_base=C	minor_cov=24/15	new_cov=24/15	polymorphism_frequency=2.191e-01	polymorphism_score=69.2	prediction=polymorphism	ref_cov=69/70	total_cov=93/85
RA	451	.	Xen14_38	48281	0	C	T	bias_e_value=1014310	bias_p_value=0.204352	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.2	fisher_strand_p_value=0.275308	frequency=2.281e-01	ks_quality_p_value=0.187179	major_base=C	major_cov=67/65	major_frequency=7.719e-01	minor_base=T	minor_cov=24/15	new_cov=24/15	polymorphism_frequency=2.281e-01	polymorphism_score=68.6	prediction=polymorphism	ref_cov=67/65	total_cov=91/80
RA	452	.	Xen14_38	48325	0	T	C	bias_e_value=869173	bias_p_value=0.175111	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.3	fisher_strand_p_value=0.0419899	frequency=6.227e-01	ks_quality_p_value=1	major_base=C	major_cov=146/90	major_frequency=6.227e-01	minor_base=T	minor_cov=73/70	new_cov=146/90	polymorphism_frequency=6.227e-01	polymorphism_score=301.8	prediction=polymorphism	ref_cov=73/70	total_cov=219/161
RA	453	.	Xen14_38	48337	0	A	G	bias_e_value=4006800	bias_p_value=0.807246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=709.4	fisher_strand_p_value=0.447402	frequency=7.517e-01	ks_quality_p_value=1	major_base=G	major_cov=242/206	major_frequency=7.517e-01	minor_base=A	minor_cov=74/74	new_cov=242/206	polymorphism_frequency=7.517e-01	polymorphism_score=283.7	prediction=polymorphism	ref_cov=74/74	total_cov=316/280
RA	454	.	Xen14_38	48371	0	G	T	bias_e_value=4293360	bias_p_value=0.864981	consensus_score=2462.5	fisher_strand_p_value=0.527638	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=457/449	major_frequency=8.645e-01	minor_base=G	minor_cov=67/75	new_cov=457/449	polymorphism_frequency=8.645e-01	polymorphism_score=inf	prediction=consensus	ref_cov=67/75	total_cov=525/524
RA	455	.	Xen14_39	31639	0	A	G	bias_e_value=917.586	bias_p_value=0.000184865	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.6	fisher_strand_p_value=1.52932e-05	frequency=2.456e-01	ks_quality_p_value=1	major_base=A	major_cov=15/28	major_frequency=7.544e-01	minor_base=G	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.456e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=15/28	total_cov=29/28
RA	456	.	Xen14_43	24069	0	A	C	bias_e_value=4963540	bias_p_value=1	consensus_score=14.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=1/7	major_frequency=8.889e-01	minor_base=T	minor_cov=0/1	new_cov=1/7	polymorphism_frequency=8.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=1/9
RA	457	.	Xen14_43	39111	0	A	G	bias_e_value=250518	bias_p_value=0.0504716	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.0	fisher_strand_p_value=0.218269	frequency=2.623e-01	ks_quality_p_value=0.0403377	major_base=A	major_cov=47/43	major_frequency=7.377e-01	minor_base=G	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=2.623e-01	polymorphism_score=59.3	prediction=polymorphism	ref_cov=47/43	total_cov=68/54
RA	458	.	Xen14_43	39114	0	G	A	bias_e_value=1031290	bias_p_value=0.207772	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.4	fisher_strand_p_value=0.309855	frequency=2.640e-01	ks_quality_p_value=0.170046	major_base=G	major_cov=48/44	major_frequency=7.360e-01	minor_base=A	minor_cov=21/12	new_cov=21/12	polymorphism_frequency=2.640e-01	polymorphism_score=60.7	prediction=polymorphism	ref_cov=48/44	total_cov=69/57
RA	459	.	Xen14_43	39195	0	G	A	bias_e_value=4812970	bias_p_value=0.969665	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.6	fisher_strand_p_value=0.76402	frequency=5.376e-01	ks_quality_p_value=1	major_base=A	major_cov=62/38	major_frequency=5.376e-01	minor_base=G	minor_cov=51/35	new_cov=62/38	polymorphism_frequency=5.376e-01	polymorphism_score=192.2	prediction=polymorphism	ref_cov=51/35	total_cov=113/73
RA	460	.	Xen14_43	39246	0	A	G	bias_e_value=3223820	bias_p_value=0.649501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.6	fisher_strand_p_value=0.290418	frequency=5.430e-01	ks_quality_p_value=1	major_base=G	major_cov=58/43	major_frequency=5.430e-01	minor_base=A	minor_cov=56/29	new_cov=58/43	polymorphism_frequency=5.430e-01	polymorphism_score=186.2	prediction=polymorphism	ref_cov=56/29	total_cov=115/72
RA	461	.	Xen14_43	39249	0	C	G	bias_e_value=1567310	bias_p_value=0.315765	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.1	fisher_strand_p_value=0.362711	frequency=5.519e-01	ks_quality_p_value=0.258583	major_base=G	major_cov=58/43	major_frequency=5.519e-01	minor_base=C	minor_cov=53/29	new_cov=58/43	polymorphism_frequency=5.519e-01	polymorphism_score=268.6	prediction=polymorphism	ref_cov=53/29	total_cov=111/72
RA	462	.	Xen14_43	39258	0	T	A	bias_e_value=3172320	bias_p_value=0.639125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.0	fisher_strand_p_value=0.641006	frequency=5.398e-01	ks_quality_p_value=0.440125	major_base=A	major_cov=57/38	major_frequency=5.398e-01	minor_base=T	minor_cov=52/29	new_cov=57/38	polymorphism_frequency=5.398e-01	polymorphism_score=241.6	prediction=polymorphism	ref_cov=52/29	total_cov=109/67
RA	463	.	Xen14_43	39261	0	G	A	bias_e_value=3302960	bias_p_value=0.665444	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.9	fisher_strand_p_value=0.645252	frequency=5.333e-01	ks_quality_p_value=0.470436	major_base=A	major_cov=58/38	major_frequency=5.333e-01	minor_base=G	minor_cov=54/30	new_cov=58/38	polymorphism_frequency=5.333e-01	polymorphism_score=188.6	prediction=polymorphism	ref_cov=54/30	total_cov=112/68
RA	464	.	Xen14_43	39264	0	C	A	bias_e_value=4803110	bias_p_value=0.967678	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.8	fisher_strand_p_value=0.756767	frequency=5.367e-01	ks_quality_p_value=1	major_base=A	major_cov=57/38	major_frequency=5.367e-01	minor_base=C	minor_cov=52/30	new_cov=57/38	polymorphism_frequency=5.367e-01	polymorphism_score=249.7	prediction=polymorphism	ref_cov=52/30	total_cov=109/68
RA	465	.	Xen14_43	39291	0	G	A	bias_e_value=4569560	bias_p_value=0.920625	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.4	fisher_strand_p_value=0.629013	frequency=5.155e-01	ks_quality_p_value=1	major_base=A	major_cov=52/31	major_frequency=5.155e-01	minor_base=G	minor_cov=45/33	new_cov=52/31	polymorphism_frequency=5.155e-01	polymorphism_score=177.0	prediction=polymorphism	ref_cov=45/33	total_cov=97/64
RA	466	.	Xen14_43	39293	0	C	A	bias_e_value=4573710	bias_p_value=0.921462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.6	fisher_strand_p_value=0.630823	frequency=5.250e-01	ks_quality_p_value=1	major_base=A	major_cov=52/32	major_frequency=5.250e-01	minor_base=C	minor_cov=44/32	new_cov=52/32	polymorphism_frequency=5.250e-01	polymorphism_score=233.2	prediction=polymorphism	ref_cov=44/32	total_cov=96/64
RA	467	.	Xen14_43	39296	0	C	T	bias_e_value=353257	bias_p_value=0.0711704	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.2	fisher_strand_p_value=0.435977	frequency=4.970e-01	ks_quality_p_value=0.0307265	major_base=C	major_cov=47/38	major_frequency=5.030e-01	minor_base=T	minor_cov=52/32	new_cov=52/32	polymorphism_frequency=4.970e-01	polymorphism_score=191.7	prediction=polymorphism	ref_cov=47/38	total_cov=99/70
RA	468	.	Xen14_43	39300	0	G	A	bias_e_value=967127	bias_p_value=0.194846	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.3	fisher_strand_p_value=0.279499	frequency=4.912e-01	ks_quality_p_value=0.173024	major_base=G	major_cov=46/41	major_frequency=5.088e-01	minor_base=A	minor_cov=52/32	new_cov=52/32	polymorphism_frequency=4.912e-01	polymorphism_score=190.9	prediction=polymorphism	ref_cov=46/41	total_cov=100/74
RA	469	.	Xen14_43	39312	0	G	A	bias_e_value=879897	bias_p_value=0.177272	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.9	fisher_strand_p_value=0.175526	frequency=4.889e-01	ks_quality_p_value=0.243117	major_base=G	major_cov=49/43	major_frequency=5.111e-01	minor_base=A	minor_cov=56/32	new_cov=56/32	polymorphism_frequency=4.889e-01	polymorphism_score=199.2	prediction=polymorphism	ref_cov=49/43	total_cov=105/75
RA	470	.	Xen14_43	39330	0	G	C	bias_e_value=442714	bias_p_value=0.0891932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.8	fisher_strand_p_value=0.152223	frequency=4.667e-01	ks_quality_p_value=0.11642	major_base=G	major_cov=52/52	major_frequency=5.333e-01	minor_base=C	minor_cov=55/36	new_cov=55/36	polymorphism_frequency=4.667e-01	polymorphism_score=302.0	prediction=polymorphism	ref_cov=52/52	total_cov=107/88
RA	471	.	Xen14_43	39336	0	C	T	bias_e_value=1305870	bias_p_value=0.263093	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.0	fisher_strand_p_value=0.246836	frequency=4.531e-01	ks_quality_p_value=0.294244	major_base=C	major_cov=51/54	major_frequency=5.469e-01	minor_base=T	minor_cov=50/37	new_cov=50/37	polymorphism_frequency=4.531e-01	polymorphism_score=191.6	prediction=polymorphism	ref_cov=51/54	total_cov=101/92
RA	472	.	Xen14_43	39338	0	G	A	bias_e_value=1195300	bias_p_value=0.240816	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=0.143767	frequency=4.550e-01	ks_quality_p_value=0.447413	major_base=G	major_cov=48/55	major_frequency=5.450e-01	minor_base=A	minor_cov=50/36	new_cov=50/36	polymorphism_frequency=4.550e-01	polymorphism_score=189.6	prediction=polymorphism	ref_cov=48/55	total_cov=98/92
RA	473	.	Xen14_43	39342	0	A	G	bias_e_value=2121690	bias_p_value=0.427455	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.6	fisher_strand_p_value=0.146275	frequency=4.427e-01	ks_quality_p_value=1	major_base=A	major_cov=51/56	major_frequency=5.573e-01	minor_base=G	minor_cov=50/35	new_cov=50/35	polymorphism_frequency=4.427e-01	polymorphism_score=177.8	prediction=polymorphism	ref_cov=51/56	total_cov=101/93
RA	474	.	Xen14_43	39366	0	T	C	bias_e_value=1839890	bias_p_value=0.370681	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.7	fisher_strand_p_value=0.118237	frequency=4.478e-01	ks_quality_p_value=1	major_base=T	major_cov=58/53	major_frequency=5.522e-01	minor_base=C	minor_cov=57/33	new_cov=57/33	polymorphism_frequency=4.478e-01	polymorphism_score=198.9	prediction=polymorphism	ref_cov=58/53	total_cov=115/86
RA	475	.	Xen14_43	39408	0	A	G	bias_e_value=1305330	bias_p_value=0.262983	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.4	fisher_strand_p_value=0.0751728	frequency=4.811e-01	ks_quality_p_value=0.965614	major_base=A	major_cov=51/59	major_frequency=5.189e-01	minor_base=G	minor_cov=60/42	new_cov=60/42	polymorphism_frequency=4.811e-01	polymorphism_score=233.3	prediction=polymorphism	ref_cov=51/59	total_cov=111/101
RA	476	.	Xen14_43	39411	0	G	A	bias_e_value=1638800	bias_p_value=0.330168	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=0.100189	frequency=4.717e-01	ks_quality_p_value=0.997725	major_base=G	major_cov=52/60	major_frequency=5.283e-01	minor_base=A	minor_cov=58/42	new_cov=58/42	polymorphism_frequency=4.717e-01	polymorphism_score=222.3	prediction=polymorphism	ref_cov=52/60	total_cov=111/102
RA	477	.	Xen14_43	39417	0	G	A	bias_e_value=1437320	bias_p_value=0.289575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.5	fisher_strand_p_value=0.100338	frequency=4.623e-01	ks_quality_p_value=0.827188	major_base=G	major_cov=52/62	major_frequency=5.377e-01	minor_base=A	minor_cov=56/42	new_cov=56/42	polymorphism_frequency=4.623e-01	polymorphism_score=220.1	prediction=polymorphism	ref_cov=52/62	total_cov=108/104
RA	478	.	Xen14_43	39423	0	G	C	bias_e_value=973315	bias_p_value=0.196093	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=0.119759	frequency=4.400e-01	ks_quality_p_value=0.407252	major_base=G	major_cov=51/61	major_frequency=5.600e-01	minor_base=C	minor_cov=50/38	new_cov=50/38	polymorphism_frequency=4.400e-01	polymorphism_score=287.1	prediction=polymorphism	ref_cov=51/61	total_cov=101/99
RA	479	.	Xen14_43	39424	0	G	T	bias_e_value=281406	bias_p_value=0.0566946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.8	fisher_strand_p_value=0.0891271	frequency=4.350e-01	ks_quality_p_value=0.113768	major_base=G	major_cov=51/62	major_frequency=5.650e-01	minor_base=T	minor_cov=50/37	new_cov=50/37	polymorphism_frequency=4.350e-01	polymorphism_score=254.3	prediction=polymorphism	ref_cov=51/62	total_cov=101/100
RA	480	.	Xen14_43	39425	0	A	G	bias_e_value=2190620	bias_p_value=0.441342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.4	fisher_strand_p_value=0.153593	frequency=4.372e-01	ks_quality_p_value=1	major_base=A	major_cov=51/61	major_frequency=5.628e-01	minor_base=G	minor_cov=49/38	new_cov=49/38	polymorphism_frequency=4.372e-01	polymorphism_score=189.9	prediction=polymorphism	ref_cov=51/61	total_cov=100/99
RA	481	.	Xen14_43	39435	0	G	A	bias_e_value=2001630	bias_p_value=0.403268	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.5	fisher_strand_p_value=0.13397	frequency=4.930e-01	ks_quality_p_value=1	major_base=G	major_cov=50/59	major_frequency=5.070e-01	minor_base=A	minor_cov=60/46	new_cov=60/46	polymorphism_frequency=4.930e-01	polymorphism_score=236.4	prediction=polymorphism	ref_cov=50/59	total_cov=110/105
RA	482	.	Xen14_43	39539	0	A	C	bias_e_value=700115	bias_p_value=0.141052	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.8	fisher_strand_p_value=0.247432	frequency=5.232e-01	ks_quality_p_value=0.128047	major_base=C	major_cov=50/29	major_frequency=5.232e-01	minor_base=A	minor_cov=38/34	new_cov=50/29	polymorphism_frequency=5.232e-01	polymorphism_score=210.1	prediction=polymorphism	ref_cov=38/34	total_cov=90/63
RA	483	.	Xen14_43	39657	0	T	C	bias_e_value=790804	bias_p_value=0.159323	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.4	fisher_strand_p_value=1	frequency=5.169e-01	ks_quality_p_value=0.0371031	major_base=C	major_cov=29/32	major_frequency=5.169e-01	minor_base=T	minor_cov=27/30	new_cov=29/32	polymorphism_frequency=5.169e-01	polymorphism_score=127.0	prediction=polymorphism	ref_cov=27/30	total_cov=56/62
RA	484	.	Xen14_43	39680	0	T	C	bias_e_value=441111	bias_p_value=0.0888703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.3	fisher_strand_p_value=0.698882	frequency=5.556e-01	ks_quality_p_value=0.0252429	major_base=C	major_cov=33/27	major_frequency=5.556e-01	minor_base=T	minor_cov=24/24	new_cov=33/27	polymorphism_frequency=5.556e-01	polymorphism_score=102.4	prediction=polymorphism	ref_cov=24/24	total_cov=57/51
RA	485	.	Xen14_43	39862	0	C	A	bias_e_value=4871490	bias_p_value=0.981456	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.7	fisher_strand_p_value=0.813702	frequency=5.211e-01	ks_quality_p_value=1	major_base=A	major_cov=21/16	major_frequency=5.211e-01	minor_base=C	minor_cov=18/16	new_cov=21/16	polymorphism_frequency=5.211e-01	polymorphism_score=101.2	prediction=polymorphism	ref_cov=18/16	total_cov=39/32
RA	486	.	Xen14_43	39877	0	G	A	bias_e_value=3089980	bias_p_value=0.622536	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=0.269249	frequency=5.122e-01	ks_quality_p_value=1	major_base=A	major_cov=24/18	major_frequency=5.122e-01	minor_base=G	minor_cov=17/23	new_cov=24/18	polymorphism_frequency=5.122e-01	polymorphism_score=87.5	prediction=polymorphism	ref_cov=17/23	total_cov=41/41
RA	487	.	Xen14_43	39878	0	T	C	bias_e_value=3089980	bias_p_value=0.622536	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=0.269249	frequency=5.122e-01	ks_quality_p_value=1	major_base=C	major_cov=24/18	major_frequency=5.122e-01	minor_base=T	minor_cov=17/23	new_cov=24/18	polymorphism_frequency=5.122e-01	polymorphism_score=86.1	prediction=polymorphism	ref_cov=17/23	total_cov=41/41
RA	488	.	Xen14_43	39899	0	T	G	bias_e_value=1572300	bias_p_value=0.31677	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=0.398875	frequency=4.889e-01	ks_quality_p_value=0.236205	major_base=T	major_cov=25/21	major_frequency=5.111e-01	minor_base=G	minor_cov=28/16	new_cov=28/16	polymorphism_frequency=4.889e-01	polymorphism_score=137.3	prediction=polymorphism	ref_cov=25/21	total_cov=53/37
RA	489	.	Xen14_43	40767	0	G	A	bias_e_value=948232	bias_p_value=0.19104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.6	fisher_strand_p_value=0.20979	frequency=3.918e-01	ks_quality_p_value=0.224552	major_base=G	major_cov=46/58	major_frequency=6.082e-01	minor_base=A	minor_cov=37/30	new_cov=37/30	polymorphism_frequency=3.918e-01	polymorphism_score=142.6	prediction=polymorphism	ref_cov=46/58	total_cov=83/88
RA	490	.	Xen14_43	40794	0	G	A	bias_e_value=4963340	bias_p_value=0.99996	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.6	fisher_strand_p_value=1	frequency=4.806e-01	ks_quality_p_value=0.991057	major_base=G	major_cov=49/58	major_frequency=5.194e-01	minor_base=A	minor_cov=46/53	new_cov=46/53	polymorphism_frequency=4.806e-01	polymorphism_score=225.8	prediction=polymorphism	ref_cov=49/58	total_cov=96/111
RA	491	.	Xen14_43	40897	0	A	T	bias_e_value=3317380	bias_p_value=0.66835	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.5	fisher_strand_p_value=0.531297	frequency=5.549e-01	ks_quality_p_value=0.575941	major_base=T	major_cov=34/62	major_frequency=5.549e-01	minor_base=A	minor_cov=31/46	new_cov=34/62	polymorphism_frequency=5.549e-01	polymorphism_score=227.3	prediction=polymorphism	ref_cov=31/46	total_cov=65/109
RA	492	.	Xen14_43	41059	0	A	G	bias_e_value=806547	bias_p_value=0.162494	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.0	fisher_strand_p_value=0.873	frequency=4.348e-01	ks_quality_p_value=0.0436079	major_base=A	major_cov=50/41	major_frequency=5.652e-01	minor_base=G	minor_cov=40/30	new_cov=40/30	polymorphism_frequency=4.348e-01	polymorphism_score=153.3	prediction=polymorphism	ref_cov=50/41	total_cov=91/71
RA	493	.	Xen14_43	41061	0	T	C	bias_e_value=192929	bias_p_value=0.0388693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.6	fisher_strand_p_value=1	frequency=4.403e-01	ks_quality_p_value=0.00642772	major_base=T	major_cov=50/39	major_frequency=5.597e-01	minor_base=C	minor_cov=40/30	new_cov=40/30	polymorphism_frequency=4.403e-01	polymorphism_score=155.0	prediction=polymorphism	ref_cov=50/39	total_cov=90/69
RA	494	.	Xen14_43	41075	0	G	A	bias_e_value=350310	bias_p_value=0.0705766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.7	fisher_strand_p_value=0.632633	frequency=4.691e-01	ks_quality_p_value=0.0209577	major_base=G	major_cov=48/38	major_frequency=5.309e-01	minor_base=A	minor_cov=46/30	new_cov=46/30	polymorphism_frequency=4.691e-01	polymorphism_score=168.7	prediction=polymorphism	ref_cov=48/38	total_cov=94/68
RA	495	.	Xen14_43	41097	0	A	G	bias_e_value=4818560	bias_p_value=0.970792	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.9	fisher_strand_p_value=0.76825	frequency=4.813e-01	ks_quality_p_value=1	major_base=A	major_cov=56/41	major_frequency=5.187e-01	minor_base=G	minor_cov=54/36	new_cov=54/36	polymorphism_frequency=4.813e-01	polymorphism_score=203.9	prediction=polymorphism	ref_cov=56/41	total_cov=110/77
RA	496	.	Xen14_43	41107	0	T	C	bias_e_value=2596580	bias_p_value=0.523131	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.0	fisher_strand_p_value=1	frequency=4.745e-01	ks_quality_p_value=0.200774	major_base=T	major_cov=61/42	major_frequency=5.255e-01	minor_base=C	minor_cov=56/37	new_cov=56/37	polymorphism_frequency=4.745e-01	polymorphism_score=210.1	prediction=polymorphism	ref_cov=61/42	total_cov=117/79
RA	497	.	Xen14_43	41131	0	T	A	bias_e_value=1847020	bias_p_value=0.372117	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.5	fisher_strand_p_value=0.118911	frequency=5.098e-01	ks_quality_p_value=1	major_base=A	major_cov=66/38	major_frequency=5.098e-01	minor_base=T	minor_cov=52/48	new_cov=66/38	polymorphism_frequency=5.098e-01	polymorphism_score=302.1	prediction=polymorphism	ref_cov=52/48	total_cov=118/86
RA	498	.	Xen14_43	41148	0	C	T	bias_e_value=1333400	bias_p_value=0.26864	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=0.0863223	frequency=4.876e-01	ks_quality_p_value=0.866021	major_base=C	major_cov=53/50	major_frequency=5.124e-01	minor_base=T	minor_cov=63/35	new_cov=63/35	polymorphism_frequency=4.876e-01	polymorphism_score=223.3	prediction=polymorphism	ref_cov=53/50	total_cov=116/85
RA	499	.	Xen14_43	41162	0	T	C	bias_e_value=833550	bias_p_value=0.167935	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=0.252594	frequency=4.949e-01	ks_quality_p_value=0.157349	major_base=T	major_cov=54/46	major_frequency=5.051e-01	minor_base=C	minor_cov=61/37	new_cov=61/37	polymorphism_frequency=4.949e-01	polymorphism_score=222.6	prediction=polymorphism	ref_cov=54/46	total_cov=115/83
RA	500	.	Xen14_43	41182	0	T	C	bias_e_value=1490360	bias_p_value=0.300262	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.9	fisher_strand_p_value=0.132872	frequency=5.000e-01	ks_quality_p_value=0.6573	major_base=T	major_cov=45/45	major_frequency=5.000e-01	minor_base=C	minor_cov=56/34	new_cov=56/34	polymorphism_frequency=5.000e-01	polymorphism_score=205.3	prediction=polymorphism	ref_cov=45/45	total_cov=101/79
RA	501	.	Xen14_43	41209	0	T	A	bias_e_value=1290220	bias_p_value=0.259939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.9	fisher_strand_p_value=0.0714311	frequency=5.329e-01	ks_quality_p_value=1	major_base=A	major_cov=54/27	major_frequency=5.329e-01	minor_base=T	minor_cov=37/34	new_cov=54/27	polymorphism_frequency=5.329e-01	polymorphism_score=211.1	prediction=polymorphism	ref_cov=37/34	total_cov=91/61
RA	502	.	Xen14_43	41219	1	.	T	bias_e_value=2676440	bias_p_value=0.53922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.5	fisher_strand_p_value=0.210952	frequency=5.379e-01	ks_quality_p_value=1	major_base=T	major_cov=47/24	major_frequency=5.379e-01	minor_base=.	minor_cov=33/28	new_cov=47/24	polymorphism_frequency=5.379e-01	polymorphism_score=223.1	prediction=polymorphism	ref_cov=33/28	total_cov=80/52
RA	503	.	Xen14_45	36193	0	A	C	bias_e_value=2607500	bias_p_value=0.52533	consensus_reject=FREQUENCY_CUTOFF	consensus_score=452.9	fisher_strand_p_value=0.202146	frequency=3.033e-01	ks_quality_p_value=1	major_base=A	major_cov=91/118	major_frequency=6.967e-01	minor_base=C	minor_cov=32/59	new_cov=32/59	polymorphism_frequency=3.033e-01	polymorphism_score=253.0	prediction=polymorphism	ref_cov=91/118	total_cov=123/177
RA	504	.	Xen14_45	36294	0	A	T	bias_e_value=1069910	bias_p_value=0.215554	consensus_reject=FREQUENCY_CUTOFF	consensus_score=527.5	fisher_strand_p_value=0.0555298	frequency=3.469e-01	ks_quality_p_value=0.996867	major_base=A	major_cov=91/246	major_frequency=6.531e-01	minor_base=T	minor_cov=63/116	new_cov=63/116	polymorphism_frequency=3.469e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/246	total_cov=155/362
RA	505	.	Xen14_45	36298	0	C	T	bias_e_value=598945	bias_p_value=0.120669	consensus_reject=FREQUENCY_CUTOFF	consensus_score=446.5	fisher_strand_p_value=0.0321629	frequency=3.405e-01	ks_quality_p_value=0.806493	major_base=C	major_cov=90/247	major_frequency=6.595e-01	minor_base=T	minor_cov=63/111	new_cov=63/111	polymorphism_frequency=3.405e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=90/247	total_cov=154/361
RA	506	.	Xen14_45	36361	0	A	C	bias_e_value=1857740	bias_p_value=0.374278	consensus_reject=FREQUENCY_CUTOFF	consensus_score=367.4	fisher_strand_p_value=0.119927	frequency=3.794e-01	ks_quality_p_value=1	major_base=A	major_cov=82/201	major_frequency=6.206e-01	minor_base=C	minor_cov=63/110	new_cov=63/110	polymorphism_frequency=3.794e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=82/201	total_cov=145/311
RA	507	.	Xen14_5	17958	0	T	G	bias_e_value=0.000370591	bias_p_value=7.46627e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.2	fisher_strand_p_value=2.70153e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=51/19	major_frequency=7.143e-01	minor_base=G	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.857e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=51/19	total_cov=51/48
RA	508	.	Xen14_5	81807	0	A	G	bias_e_value=0.997225	bias_p_value=2.0091e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.8	fisher_strand_p_value=1.03643e-08	frequency=2.794e-01	ks_quality_p_value=1	major_base=A	major_cov=13/36	major_frequency=7.206e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.794e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=13/36	total_cov=32/36
RA	509	.	Xen14_50	22432	0	C	A	bias_e_value=0.0189675	bias_p_value=3.82136e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.4	fisher_strand_p_value=1.62325e-10	frequency=2.843e-01	ks_quality_p_value=1	major_base=C	major_cov=47/26	major_frequency=7.157e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.843e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=47/26	total_cov=47/55
RA	510	.	Xen14_50	28556	0	C	A	bias_e_value=7.60531e-07	bias_p_value=1.53223e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.0	fisher_strand_p_value=4.50204e-15	frequency=2.871e-01	ks_quality_p_value=1	major_base=C	major_cov=14/58	major_frequency=7.129e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.871e-01	polymorphism_score=63.1	prediction=polymorphism	ref_cov=14/58	total_cov=43/58
RA	511	.	Xen14_53	9824	0	C	T	bias_e_value=1.03934e-11	bias_p_value=2.09395e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.0	fisher_strand_p_value=4.59949e-20	frequency=2.568e-01	ks_quality_p_value=1	major_base=C	major_cov=22/88	major_frequency=7.432e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.568e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=22/88	total_cov=83/88
RA	512	.	Xen14_53	29874	0	A	G	bias_e_value=4069390	bias_p_value=0.819857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.6	fisher_strand_p_value=1	frequency=2.547e-01	ks_quality_p_value=0.463434	major_base=A	major_cov=92/66	major_frequency=7.453e-01	minor_base=G	minor_cov=31/23	new_cov=31/23	polymorphism_frequency=2.547e-01	polymorphism_score=100.5	prediction=polymorphism	ref_cov=92/66	total_cov=123/89
RA	513	.	Xen14_53	30216	0	C	T	bias_e_value=4927310	bias_p_value=0.9927	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.7	fisher_strand_p_value=0.894797	frequency=4.783e-01	ks_quality_p_value=0.985287	major_base=C	major_cov=55/65	major_frequency=5.217e-01	minor_base=T	minor_cov=49/61	new_cov=49/61	polymorphism_frequency=4.783e-01	polymorphism_score=243.6	prediction=polymorphism	ref_cov=55/65	total_cov=104/126
RA	514	.	Xen14_57	26027	0	T	A	bias_e_value=3720550	bias_p_value=0.749575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.3	fisher_strand_p_value=1	frequency=2.125e-01	ks_quality_p_value=0.381962	major_base=T	major_cov=39/24	major_frequency=7.875e-01	minor_base=A	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=2.125e-01	polymorphism_score=39.7	prediction=polymorphism	ref_cov=39/24	total_cov=49/31
RA	515	.	Xen14_57	26165	0	C	T	bias_e_value=2915490	bias_p_value=0.587381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.0	fisher_strand_p_value=0.243432	frequency=5.333e-01	ks_quality_p_value=1	major_base=T	major_cov=24/32	major_frequency=5.333e-01	minor_base=C	minor_cov=27/22	new_cov=24/32	polymorphism_frequency=5.333e-01	polymorphism_score=104.1	prediction=polymorphism	ref_cov=27/22	total_cov=51/54
RA	516	.	Xen14_58	24540	0	A	G	bias_e_value=821179	bias_p_value=0.165442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=0.169931	frequency=2.294e-01	ks_quality_p_value=0.229358	major_base=A	major_cov=33/51	major_frequency=7.706e-01	minor_base=G	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=2.294e-01	polymorphism_score=43.4	prediction=polymorphism	ref_cov=33/51	total_cov=48/62
RA	517	.	Xen14_60	18851	0	T	A	bias_e_value=1837260	bias_p_value=0.370152	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.8	fisher_strand_p_value=0.238218	frequency=2.157e-01	ks_quality_p_value=0.4953	major_base=T	major_cov=41/39	major_frequency=7.843e-01	minor_base=A	minor_cov=8/14	new_cov=8/14	polymorphism_frequency=2.157e-01	polymorphism_score=53.0	prediction=polymorphism	ref_cov=41/39	total_cov=50/54
RA	518	.	Xen14_60	22002	0	C	T	bias_e_value=1304540	bias_p_value=0.262824	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.2	fisher_strand_p_value=1	frequency=3.579e-01	ks_quality_p_value=0.0725272	major_base=C	major_cov=29/32	major_frequency=6.421e-01	minor_base=T	minor_cov=16/18	new_cov=16/18	polymorphism_frequency=3.579e-01	polymorphism_score=68.3	prediction=polymorphism	ref_cov=29/32	total_cov=45/50
RA	519	.	Xen14_60	22007	0	G	C	bias_e_value=590438	bias_p_value=0.118955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.1	fisher_strand_p_value=0.666385	frequency=3.441e-01	ks_quality_p_value=0.0382226	major_base=G	major_cov=30/31	major_frequency=6.559e-01	minor_base=C	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.441e-01	polymorphism_score=97.7	prediction=polymorphism	ref_cov=30/31	total_cov=44/50
RA	520	.	Xen14_60	22014	0	G	A	bias_e_value=2370080	bias_p_value=0.477499	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.3	fisher_strand_p_value=0.520671	frequency=3.333e-01	ks_quality_p_value=0.333333	major_base=G	major_cov=33/31	major_frequency=6.667e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.333e-01	polymorphism_score=62.8	prediction=polymorphism	ref_cov=33/31	total_cov=47/49
RA	521	.	Xen14_60	22016	0	C	T	bias_e_value=1929650	bias_p_value=0.388764	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.5	fisher_strand_p_value=0.390273	frequency=3.265e-01	ks_quality_p_value=0.32503	major_base=C	major_cov=36/30	major_frequency=6.735e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.265e-01	polymorphism_score=61.9	prediction=polymorphism	ref_cov=36/30	total_cov=50/48
RA	522	.	Xen14_60	22041	0	C	T	bias_e_value=332002	bias_p_value=0.0668883	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.5	fisher_strand_p_value=0.394455	frequency=3.107e-01	ks_quality_p_value=0.0314656	major_base=C	major_cov=39/32	major_frequency=6.893e-01	minor_base=T	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=3.107e-01	polymorphism_score=61.6	prediction=polymorphism	ref_cov=39/32	total_cov=53/50
RA	523	.	Xen14_60	22047	0	T	A	bias_e_value=382932	bias_p_value=0.077149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.2	fisher_strand_p_value=0.214404	frequency=2.936e-01	ks_quality_p_value=0.0690226	major_base=T	major_cov=44/33	major_frequency=7.064e-01	minor_base=A	minor_cov=14/18	new_cov=14/18	polymorphism_frequency=2.936e-01	polymorphism_score=84.5	prediction=polymorphism	ref_cov=44/33	total_cov=58/51
RA	524	.	Xen14_60	22059	0	C	A	bias_e_value=517850	bias_p_value=0.104331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.8	fisher_strand_p_value=0.104941	frequency=2.174e-01	ks_quality_p_value=0.205566	major_base=C	major_cov=58/32	major_frequency=7.826e-01	minor_base=A	minor_cov=11/14	new_cov=11/14	polymorphism_frequency=2.174e-01	polymorphism_score=60.5	prediction=polymorphism	ref_cov=58/32	total_cov=69/46
RA	525	.	Xen14_60	22062	0	G	C	bias_e_value=304937	bias_p_value=0.0614355	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.0	fisher_strand_p_value=0.0666264	frequency=2.069e-01	ks_quality_p_value=0.167857	major_base=G	major_cov=58/34	major_frequency=7.931e-01	minor_base=C	minor_cov=10/14	new_cov=10/14	polymorphism_frequency=2.069e-01	polymorphism_score=65.8	prediction=polymorphism	ref_cov=58/34	total_cov=69/48
RA	526	.	Xen14_60	22066	0	A	G	bias_e_value=722318	bias_p_value=0.145525	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.3	fisher_strand_p_value=0.164521	frequency=2.143e-01	ks_quality_p_value=0.200499	major_base=A	major_cov=55/33	major_frequency=7.857e-01	minor_base=G	minor_cov=11/13	new_cov=11/13	polymorphism_frequency=2.143e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=55/33	total_cov=68/46
RA	527	.	Xen14_60	22101	0	T	C	bias_e_value=135873	bias_p_value=0.0273743	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=0.010545	frequency=2.256e-01	ks_quality_p_value=0.401572	major_base=T	major_cov=69/34	major_frequency=7.744e-01	minor_base=C	minor_cov=12/18	new_cov=12/18	polymorphism_frequency=2.256e-01	polymorphism_score=52.8	prediction=polymorphism	ref_cov=69/34	total_cov=81/52
RA	528	.	Xen14_60	22116	0	T	C	bias_e_value=716377	bias_p_value=0.144328	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.3	fisher_strand_p_value=0.0896011	frequency=3.642e-01	ks_quality_p_value=0.364238	major_base=T	major_cov=61/35	major_frequency=6.358e-01	minor_base=C	minor_cov=27/28	new_cov=27/28	polymorphism_frequency=3.642e-01	polymorphism_score=115.0	prediction=polymorphism	ref_cov=61/35	total_cov=88/63
RA	529	.	Xen14_60	22143	0	G	A	bias_e_value=562348	bias_p_value=0.113296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.0	fisher_strand_p_value=0.0588636	frequency=4.379e-01	ks_quality_p_value=0.406734	major_base=G	major_cov=62/33	major_frequency=5.621e-01	minor_base=A	minor_cov=37/37	new_cov=37/37	polymorphism_frequency=4.379e-01	polymorphism_score=161.5	prediction=polymorphism	ref_cov=62/33	total_cov=99/70
RA	530	.	Xen14_60	22155	0	C	T	bias_e_value=411104	bias_p_value=0.0828247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.3	fisher_strand_p_value=0.0161603	frequency=4.835e-01	ks_quality_p_value=1	major_base=C	major_cov=63/31	major_frequency=5.165e-01	minor_base=T	minor_cov=43/45	new_cov=43/45	polymorphism_frequency=4.835e-01	polymorphism_score=197.0	prediction=polymorphism	ref_cov=63/31	total_cov=106/76
RA	531	.	Xen14_60	22344	0	C	T	bias_e_value=1534540	bias_p_value=0.309162	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.2	fisher_strand_p_value=0.0910184	frequency=3.608e-01	ks_quality_p_value=1	major_base=C	major_cov=35/27	major_frequency=6.392e-01	minor_base=T	minor_cov=13/22	new_cov=13/22	polymorphism_frequency=3.608e-01	polymorphism_score=68.8	prediction=polymorphism	ref_cov=35/27	total_cov=48/49
RA	532	.	Xen14_61	5267	0	A	C	bias_e_value=87.0499	bias_p_value=1.75379e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.2	fisher_strand_p_value=1.19839e-06	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=35/45	major_frequency=8.000e-01	minor_base=C	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.000e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=35/45	total_cov=55/45
RA	533	.	Xen14_64	201	0	T	A	bias_e_value=4802090	bias_p_value=0.967473	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.9	fisher_strand_p_value=0.756032	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=23/25	major_frequency=8.000e-01	minor_base=A	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.000e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=23/25	total_cov=28/32
RA	534	.	Xen14_64	846	0	A	G	bias_e_value=1944770	bias_p_value=0.391812	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.0	fisher_strand_p_value=0.439196	frequency=2.469e-01	ks_quality_p_value=0.292194	major_base=A	major_cov=35/26	major_frequency=7.531e-01	minor_base=G	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=2.469e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=35/26	total_cov=44/37
RA	535	.	Xen14_64	849	0	T	A	bias_e_value=1757810	bias_p_value=0.354145	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.6	fisher_strand_p_value=0.301284	frequency=2.500e-01	ks_quality_p_value=0.36713	major_base=T	major_cov=36/24	major_frequency=7.500e-01	minor_base=A	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=2.500e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=36/24	total_cov=45/36
RA	536	.	Xen14_64	859	0	T	C	bias_e_value=240153	bias_p_value=0.0483834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.2	fisher_strand_p_value=0.415265	frequency=3.861e-01	ks_quality_p_value=0.0201451	major_base=T	major_cov=29/33	major_frequency=6.139e-01	minor_base=C	minor_cov=22/17	new_cov=22/17	polymorphism_frequency=3.861e-01	polymorphism_score=81.2	prediction=polymorphism	ref_cov=29/33	total_cov=51/50
RA	537	.	Xen14_64	867	0	G	A	bias_e_value=4904480	bias_p_value=0.988102	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.8	fisher_strand_p_value=0.849763	frequency=4.336e-01	ks_quality_p_value=1	major_base=G	major_cov=32/32	major_frequency=5.664e-01	minor_base=A	minor_cov=26/23	new_cov=26/23	polymorphism_frequency=4.336e-01	polymorphism_score=102.3	prediction=polymorphism	ref_cov=32/32	total_cov=58/55
RA	538	.	Xen14_64	927	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.6	fisher_strand_p_value=1	frequency=2.422e-01	ks_quality_p_value=1	major_base=G	major_cov=55/67	major_frequency=7.578e-01	minor_base=A	minor_cov=18/21	new_cov=18/21	polymorphism_frequency=2.422e-01	polymorphism_score=69.0	prediction=polymorphism	ref_cov=55/67	total_cov=73/89
RA	539	.	Xen14_64	1145	0	A	G	bias_e_value=73541.9	bias_p_value=0.0148164	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.6	fisher_strand_p_value=0.032929	frequency=7.267e-01	ks_quality_p_value=0.0626335	major_base=G	major_cov=40/85	major_frequency=7.267e-01	minor_base=A	minor_cov=24/23	new_cov=40/85	polymorphism_frequency=7.267e-01	polymorphism_score=89.8	prediction=polymorphism	ref_cov=24/23	total_cov=64/108
RA	540	.	Xen14_64	1160	0	G	A	bias_e_value=871009	bias_p_value=0.175481	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.6	fisher_strand_p_value=0.0421066	frequency=6.842e-01	ks_quality_p_value=1	major_base=A	major_cov=37/80	major_frequency=6.842e-01	minor_base=G	minor_cov=26/28	new_cov=37/80	polymorphism_frequency=6.842e-01	polymorphism_score=108.4	prediction=polymorphism	ref_cov=26/28	total_cov=63/109
RA	541	.	Xen14_64	1193	0	A	G	bias_e_value=49667.6	bias_p_value=0.0100065	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.8	fisher_strand_p_value=0.0110127	frequency=6.552e-01	ks_quality_p_value=0.118968	major_base=G	major_cov=45/69	major_frequency=6.552e-01	minor_base=A	minor_cov=36/24	new_cov=45/69	polymorphism_frequency=6.552e-01	polymorphism_score=123.2	prediction=polymorphism	ref_cov=36/24	total_cov=81/93
RA	542	.	Xen14_64	1211	0	G	T	bias_e_value=1041800	bias_p_value=0.209891	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.5	fisher_strand_p_value=0.053411	frequency=5.963e-01	ks_quality_p_value=1	major_base=T	major_cov=43/53	major_frequency=5.963e-01	minor_base=G	minor_cov=40/25	new_cov=43/53	polymorphism_frequency=5.963e-01	polymorphism_score=193.6	prediction=polymorphism	ref_cov=40/25	total_cov=83/78
RA	543	.	Xen14_64	1217	0	A	G	bias_e_value=338464	bias_p_value=0.0681901	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.7	fisher_strand_p_value=0.0801509	frequency=6.121e-01	ks_quality_p_value=0.158565	major_base=G	major_cov=47/54	major_frequency=6.121e-01	minor_base=A	minor_cov=39/25	new_cov=47/54	polymorphism_frequency=6.121e-01	polymorphism_score=135.7	prediction=polymorphism	ref_cov=39/25	total_cov=86/79
RA	544	.	Xen14_64	1331	0	G	A	bias_e_value=2379530	bias_p_value=0.479402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.1	fisher_strand_p_value=0.866858	frequency=6.933e-01	ks_quality_p_value=0.20147	major_base=A	major_cov=56/57	major_frequency=6.933e-01	minor_base=G	minor_cov=24/26	new_cov=56/57	polymorphism_frequency=6.933e-01	polymorphism_score=99.3	prediction=polymorphism	ref_cov=24/26	total_cov=80/83
RA	545	.	Xen14_64	1339	0	A	G	bias_e_value=3802980	bias_p_value=0.766183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.1	fisher_strand_p_value=0.399637	frequency=7.101e-01	ks_quality_p_value=1	major_base=G	major_cov=58/62	major_frequency=7.101e-01	minor_base=A	minor_cov=20/29	new_cov=58/62	polymorphism_frequency=7.101e-01	polymorphism_score=93.0	prediction=polymorphism	ref_cov=20/29	total_cov=78/91
RA	546	.	Xen14_64	1364	0	G	A	bias_e_value=4551330	bias_p_value=0.916954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.7	fisher_strand_p_value=0.621198	frequency=6.626e-01	ks_quality_p_value=1	major_base=A	major_cov=52/56	major_frequency=6.626e-01	minor_base=G	minor_cov=24/31	new_cov=52/56	polymorphism_frequency=6.626e-01	polymorphism_score=110.6	prediction=polymorphism	ref_cov=24/31	total_cov=76/87
RA	547	.	Xen14_64	1391	0	A	G	bias_e_value=4145810	bias_p_value=0.835252	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=1	frequency=6.154e-01	ks_quality_p_value=0.484038	major_base=G	major_cov=36/44	major_frequency=6.154e-01	minor_base=A	minor_cov=22/28	new_cov=36/44	polymorphism_frequency=6.154e-01	polymorphism_score=105.5	prediction=polymorphism	ref_cov=22/28	total_cov=59/72
RA	548	.	Xen14_64	1397	0	A	G	bias_e_value=4160040	bias_p_value=0.838121	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.4	fisher_strand_p_value=1	frequency=6.063e-01	ks_quality_p_value=0.488014	major_base=G	major_cov=34/43	major_frequency=6.063e-01	minor_base=A	minor_cov=22/28	new_cov=34/43	polymorphism_frequency=6.063e-01	polymorphism_score=103.8	prediction=polymorphism	ref_cov=22/28	total_cov=56/71
RA	549	.	Xen14_64	1457	0	C	T	bias_e_value=1543400	bias_p_value=0.310947	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.3	fisher_strand_p_value=0.191186	frequency=3.736e-01	ks_quality_p_value=0.479977	major_base=C	major_cov=27/30	major_frequency=6.264e-01	minor_base=T	minor_cov=11/23	new_cov=11/23	polymorphism_frequency=3.736e-01	polymorphism_score=67.2	prediction=polymorphism	ref_cov=27/30	total_cov=38/53
RA	550	.	Xen14_64	1783	1	.	T	bias_e_value=4389360	bias_p_value=0.88432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.1	fisher_strand_p_value=0.559348	frequency=2.581e-01	ks_quality_p_value=1	major_base=.	major_cov=18/28	major_frequency=7.419e-01	minor_base=T	minor_cov=8/8	new_cov=8/8	polymorphism_frequency=2.581e-01	polymorphism_score=70.9	prediction=polymorphism	ref_cov=18/28	total_cov=26/36
RA	551	.	Xen14_64	1848	0	G	A	bias_e_value=2101160	bias_p_value=0.423318	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.4	fisher_strand_p_value=0.582314	frequency=6.240e-01	ks_quality_p_value=0.247515	major_base=A	major_cov=41/37	major_frequency=6.240e-01	minor_base=G	minor_cov=22/25	new_cov=41/37	polymorphism_frequency=6.240e-01	polymorphism_score=97.5	prediction=polymorphism	ref_cov=22/25	total_cov=63/63
RA	552	.	Xen14_64	1893	0	C	T	bias_e_value=4913310	bias_p_value=0.98988	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.7	fisher_strand_p_value=0.861146	frequency=6.074e-01	ks_quality_p_value=1	major_base=T	major_cov=45/37	major_frequency=6.074e-01	minor_base=C	minor_cov=30/23	new_cov=45/37	polymorphism_frequency=6.074e-01	polymorphism_score=108.6	prediction=polymorphism	ref_cov=30/23	total_cov=75/60
RA	553	.	Xen14_64	1917	0	A	C	bias_e_value=1910240	bias_p_value=0.384854	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.9	fisher_strand_p_value=0.210088	frequency=6.119e-01	ks_quality_p_value=0.594813	major_base=C	major_cov=46/36	major_frequency=6.119e-01	minor_base=A	minor_cov=35/17	new_cov=46/36	polymorphism_frequency=6.119e-01	polymorphism_score=146.1	prediction=polymorphism	ref_cov=35/17	total_cov=81/53
RA	554	.	Xen14_64	1935	0	A	G	bias_e_value=1373500	bias_p_value=0.276717	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.3	fisher_strand_p_value=0.243727	frequency=5.826e-01	ks_quality_p_value=0.319604	major_base=G	major_cov=38/29	major_frequency=5.826e-01	minor_base=A	minor_cov=33/15	new_cov=38/29	polymorphism_frequency=5.826e-01	polymorphism_score=101.6	prediction=polymorphism	ref_cov=33/15	total_cov=71/44
RA	555	.	Xen14_64	1942	0	T	C	bias_e_value=729292	bias_p_value=0.14693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.0765214	frequency=5.421e-01	ks_quality_p_value=0.436466	major_base=C	major_cov=30/28	major_frequency=5.421e-01	minor_base=T	minor_cov=34/15	new_cov=30/28	polymorphism_frequency=5.421e-01	polymorphism_score=107.5	prediction=polymorphism	ref_cov=34/15	total_cov=64/43
RA	556	.	Xen14_64	1944	0	A	G	bias_e_value=2311310	bias_p_value=0.465657	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.1	fisher_strand_p_value=0.16687	frequency=5.429e-01	ks_quality_p_value=1	major_base=G	major_cov=30/27	major_frequency=5.429e-01	minor_base=A	minor_cov=32/16	new_cov=30/27	polymorphism_frequency=5.429e-01	polymorphism_score=102.4	prediction=polymorphism	ref_cov=32/16	total_cov=64/43
RA	557	.	Xen14_64	1986	0	C	T	bias_e_value=1584830	bias_p_value=0.319294	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=0.293677	frequency=2.250e-01	ks_quality_p_value=0.324464	major_base=C	major_cov=32/30	major_frequency=7.750e-01	minor_base=T	minor_cov=12/6	new_cov=12/6	polymorphism_frequency=2.250e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=32/30	total_cov=44/36
RA	558	.	Xen14_64	2382	0	A	T	bias_e_value=464739	bias_p_value=0.0936305	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.9	fisher_strand_p_value=0.0188305	frequency=3.761e-01	ks_quality_p_value=1	major_base=A	major_cov=27/41	major_frequency=6.239e-01	minor_base=T	minor_cov=26/15	new_cov=26/15	polymorphism_frequency=3.761e-01	polymorphism_score=114.9	prediction=polymorphism	ref_cov=27/41	total_cov=53/56
RA	559	.	Xen14_70	14150	0	A	G	bias_e_value=83058.7	bias_p_value=0.0167338	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.5	fisher_strand_p_value=0.0107152	frequency=2.500e-01	ks_quality_p_value=0.22176	major_base=A	major_cov=21/27	major_frequency=7.500e-01	minor_base=G	minor_cov=13/3	new_cov=13/3	polymorphism_frequency=2.500e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=21/27	total_cov=35/30
RA	560	.	Xen14_70	14163	0	G	A	bias_e_value=1880130	bias_p_value=0.378788	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.0	fisher_strand_p_value=0.344392	frequency=3.544e-01	ks_quality_p_value=0.35443	major_base=G	major_cov=26/25	major_frequency=6.456e-01	minor_base=A	minor_cov=18/10	new_cov=18/10	polymorphism_frequency=3.544e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=26/25	total_cov=44/35
RA	561	.	Xen14_70	14184	0	T	G	bias_e_value=648154	bias_p_value=0.130583	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.3	fisher_strand_p_value=0.140814	frequency=4.545e-01	ks_quality_p_value=0.203762	major_base=T	major_cov=21/27	major_frequency=5.455e-01	minor_base=G	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=4.545e-01	polymorphism_score=122.5	prediction=polymorphism	ref_cov=21/27	total_cov=45/43
RA	562	.	Xen14_70	14188	0	T	C	bias_e_value=2032980	bias_p_value=0.409583	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.6	fisher_strand_p_value=0.13713	frequency=4.444e-01	ks_quality_p_value=1	major_base=T	major_cov=21/29	major_frequency=5.556e-01	minor_base=C	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=4.444e-01	polymorphism_score=84.6	prediction=polymorphism	ref_cov=21/29	total_cov=45/45
RA	563	.	Xen14_70	14202	0	C	T	bias_e_value=165333	bias_p_value=0.0333096	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.0	fisher_strand_p_value=0.0304967	frequency=5.049e-01	ks_quality_p_value=0.175276	major_base=T	major_cov=32/20	major_frequency=5.049e-01	minor_base=C	minor_cov=20/31	new_cov=32/20	polymorphism_frequency=5.049e-01	polymorphism_score=113.6	prediction=polymorphism	ref_cov=20/31	total_cov=52/52
RA	564	.	Xen14_70	14208	0	A	G	bias_e_value=32020.5	bias_p_value=0.00645114	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.4	fisher_strand_p_value=0.124468	frequency=5.545e-01	ks_quality_p_value=0.00636701	major_base=G	major_cov=35/26	major_frequency=5.545e-01	minor_base=A	minor_cov=20/29	new_cov=35/26	polymorphism_frequency=5.545e-01	polymorphism_score=106.7	prediction=polymorphism	ref_cov=20/29	total_cov=55/55
RA	565	.	Xen14_70	14217	0	A	C	bias_e_value=100237	bias_p_value=0.0201946	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.0	fisher_strand_p_value=0.0174432	frequency=6.129e-01	ks_quality_p_value=0.169692	major_base=C	major_cov=47/29	major_frequency=6.129e-01	minor_base=A	minor_cov=19/29	new_cov=47/29	polymorphism_frequency=6.129e-01	polymorphism_score=134.5	prediction=polymorphism	ref_cov=19/29	total_cov=66/58
RA	566	.	Xen14_70	14220	0	G	A	bias_e_value=130827	bias_p_value=0.0263576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.3	fisher_strand_p_value=0.0174432	frequency=6.129e-01	ks_quality_p_value=0.232141	major_base=A	major_cov=47/29	major_frequency=6.129e-01	minor_base=G	minor_cov=19/29	new_cov=47/29	polymorphism_frequency=6.129e-01	polymorphism_score=99.8	prediction=polymorphism	ref_cov=19/29	total_cov=66/58
RA	567	.	Xen14_70	14250	0	G	C	bias_e_value=263757	bias_p_value=0.0531389	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.0	fisher_strand_p_value=0.199187	frequency=6.940e-01	ks_quality_p_value=0.0470506	major_base=C	major_cov=64/63	major_frequency=6.940e-01	minor_base=G	minor_cov=22/34	new_cov=64/63	polymorphism_frequency=6.940e-01	polymorphism_score=171.6	prediction=polymorphism	ref_cov=22/34	total_cov=86/98
RA	568	.	Xen14_70	14259	0	C	G	bias_e_value=420270	bias_p_value=0.0846714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.1	fisher_strand_p_value=0.534535	frequency=6.927e-01	ks_quality_p_value=0.0310727	major_base=G	major_cov=70/63	major_frequency=6.927e-01	minor_base=C	minor_cov=28/31	new_cov=70/63	polymorphism_frequency=6.927e-01	polymorphism_score=180.4	prediction=polymorphism	ref_cov=28/31	total_cov=98/94
RA	569	.	Xen14_70	14316	0	A	T	bias_e_value=4908140	bias_p_value=0.98884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.9	fisher_strand_p_value=0.854368	frequency=7.386e-01	ks_quality_p_value=1	major_base=T	major_cov=56/57	major_frequency=7.386e-01	minor_base=A	minor_cov=21/19	new_cov=56/57	polymorphism_frequency=7.386e-01	polymorphism_score=104.2	prediction=polymorphism	ref_cov=21/19	total_cov=77/77
RA	570	.	Xen14_70	14319	0	G	A	bias_e_value=933963	bias_p_value=0.188165	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.2	fisher_strand_p_value=0.854368	frequency=7.403e-01	ks_quality_p_value=0.0540409	major_base=A	major_cov=56/58	major_frequency=7.403e-01	minor_base=G	minor_cov=21/19	new_cov=56/58	polymorphism_frequency=7.403e-01	polymorphism_score=75.2	prediction=polymorphism	ref_cov=21/19	total_cov=77/77
RA	571	.	Xen14_70	14325	0	C	A	bias_e_value=4908140	bias_p_value=0.98884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.6	fisher_strand_p_value=0.854368	frequency=7.386e-01	ks_quality_p_value=1	major_base=A	major_cov=56/57	major_frequency=7.386e-01	minor_base=C	minor_cov=21/19	new_cov=56/57	polymorphism_frequency=7.386e-01	polymorphism_score=105.3	prediction=polymorphism	ref_cov=21/19	total_cov=77/76
RA	572	.	Xen14_75	12947	0	G	A	bias_e_value=4906320	bias_p_value=0.988472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.3	fisher_strand_p_value=0.85205	frequency=2.929e-01	ks_quality_p_value=1	major_base=G	major_cov=56/43	major_frequency=7.071e-01	minor_base=A	minor_cov=22/19	new_cov=22/19	polymorphism_frequency=2.929e-01	polymorphism_score=78.0	prediction=polymorphism	ref_cov=56/43	total_cov=78/62
RA	573	.	Xen14_76	12826	0	G	A	bias_e_value=1546570	bias_p_value=0.311587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.2	fisher_strand_p_value=0.216811	frequency=3.878e-01	ks_quality_p_value=0.424483	major_base=G	major_cov=25/35	major_frequency=6.122e-01	minor_base=A	minor_cov=21/17	new_cov=21/17	polymorphism_frequency=3.878e-01	polymorphism_score=75.1	prediction=polymorphism	ref_cov=25/35	total_cov=46/52
RA	574	.	Xen14_76	12830	0	G	A	bias_e_value=2704260	bias_p_value=0.544825	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.2	fisher_strand_p_value=0.404224	frequency=3.936e-01	ks_quality_p_value=0.530829	major_base=G	major_cov=24/33	major_frequency=6.064e-01	minor_base=A	minor_cov=19/18	new_cov=19/18	polymorphism_frequency=3.936e-01	polymorphism_score=73.6	prediction=polymorphism	ref_cov=24/33	total_cov=43/51
RA	575	.	Xen14_76	12843	0	C	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.0	fisher_strand_p_value=1	frequency=5.056e-01	ks_quality_p_value=1	major_base=T	major_cov=19/26	major_frequency=5.056e-01	minor_base=C	minor_cov=19/25	new_cov=19/26	polymorphism_frequency=5.056e-01	polymorphism_score=89.1	prediction=polymorphism	ref_cov=19/25	total_cov=38/51
RA	576	.	Xen14_76	12857	1	.	T	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.3	fisher_strand_p_value=1	frequency=5.319e-01	ks_quality_p_value=1	major_base=T	major_cov=19/31	major_frequency=5.319e-01	minor_base=.	minor_cov=17/27	new_cov=19/31	polymorphism_frequency=5.319e-01	polymorphism_score=159.0	prediction=polymorphism	ref_cov=17/27	total_cov=36/58
RA	577	.	Xen14_79	78	0	T	C	bias_e_value=1699880	bias_p_value=0.342473	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.5	fisher_strand_p_value=0.875039	frequency=5.031e-01	ks_quality_p_value=0.120413	major_base=C	major_cov=45/37	major_frequency=5.031e-01	minor_base=T	minor_cov=46/35	new_cov=45/37	polymorphism_frequency=5.031e-01	polymorphism_score=186.4	prediction=polymorphism	ref_cov=46/35	total_cov=91/73
RA	578	.	Xen14_79	210	0	C	T	bias_e_value=2524100	bias_p_value=0.508529	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.0	fisher_strand_p_value=0.191805	frequency=5.934e-01	ks_quality_p_value=1	major_base=T	major_cov=81/62	major_frequency=5.934e-01	minor_base=C	minor_cov=47/51	new_cov=81/62	polymorphism_frequency=5.934e-01	polymorphism_score=206.2	prediction=polymorphism	ref_cov=47/51	total_cov=128/114
RA	579	.	Xen14_8	67793	0	C	G	bias_e_value=3.4767e-07	bias_p_value=7.00447e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.1	fisher_strand_p_value=2.01044e-15	frequency=2.692e-01	ks_quality_p_value=1	major_base=C	major_cov=26/69	major_frequency=7.308e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.692e-01	polymorphism_score=49.4	prediction=polymorphism	ref_cov=26/69	total_cov=71/69
RA	580	.	Xen14_8	102183	0	A	C	bias_e_value=6.44999e-10	bias_p_value=1.29947e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=341.2	fisher_strand_p_value=3.14641e-18	frequency=2.545e-01	ks_quality_p_value=1	major_base=A	major_cov=35/88	major_frequency=7.455e-01	minor_base=C	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=2.545e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=35/88	total_cov=77/88
RA	581	.	Xen14_83	78	0	G	C	bias_e_value=2149030	bias_p_value=0.432963	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.1	fisher_strand_p_value=0.247602	frequency=4.144e-01	ks_quality_p_value=0.602398	major_base=G	major_cov=35/30	major_frequency=5.856e-01	minor_base=C	minor_cov=30/16	new_cov=30/16	polymorphism_frequency=4.144e-01	polymorphism_score=145.5	prediction=polymorphism	ref_cov=35/30	total_cov=65/46
RA	582	.	Xen14_83	91	0	T	C	bias_e_value=1994080	bias_p_value=0.401745	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.4	fisher_strand_p_value=0.297147	frequency=4.015e-01	ks_quality_p_value=0.448309	major_base=T	major_cov=43/39	major_frequency=5.985e-01	minor_base=C	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=4.015e-01	polymorphism_score=114.0	prediction=polymorphism	ref_cov=43/39	total_cov=77/60
RA	583	.	Xen14_83	11287	0	T	C	consensus_score=18.1	frequency=1	major_base=C	major_cov=2/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/7
RA	584	.	Xen14_85	2740	0	G	A	bias_e_value=390777	bias_p_value=0.0787295	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=0.100565	frequency=3.814e-01	ks_quality_p_value=0.150898	major_base=G	major_cov=46/74	major_frequency=6.186e-01	minor_base=A	minor_cov=38/36	new_cov=38/36	polymorphism_frequency=3.814e-01	polymorphism_score=156.9	prediction=polymorphism	ref_cov=46/74	total_cov=84/110
RA	585	.	Xen14_85	2917	0	C	T	bias_e_value=2457800	bias_p_value=0.495171	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.8	fisher_strand_p_value=0.519248	frequency=2.680e-01	ks_quality_p_value=0.354009	major_base=C	major_cov=74/68	major_frequency=7.320e-01	minor_base=T	minor_cov=30/22	new_cov=30/22	polymorphism_frequency=2.680e-01	polymorphism_score=97.5	prediction=polymorphism	ref_cov=74/68	total_cov=104/90
RA	586	.	Xen14_85	2923	0	T	A	bias_e_value=3150500	bias_p_value=0.634729	consensus_reject=FREQUENCY_CUTOFF	consensus_score=377.7	fisher_strand_p_value=0.756168	frequency=2.906e-01	ks_quality_p_value=0.368524	major_base=T	major_cov=78/66	major_frequency=7.094e-01	minor_base=A	minor_cov=34/25	new_cov=34/25	polymorphism_frequency=2.906e-01	polymorphism_score=159.7	prediction=polymorphism	ref_cov=78/66	total_cov=112/93
RA	587	.	Xen14_85	2935	0	C	A	bias_e_value=4400280	bias_p_value=0.886521	consensus_reject=FREQUENCY_CUTOFF	consensus_score=377.9	fisher_strand_p_value=0.565594	frequency=3.259e-01	ks_quality_p_value=0.995693	major_base=C	major_cov=84/67	major_frequency=6.741e-01	minor_base=A	minor_cov=44/29	new_cov=44/29	polymorphism_frequency=3.259e-01	polymorphism_score=198.3	prediction=polymorphism	ref_cov=84/67	total_cov=128/96
RA	588	.	Xen14_85	2938	0	G	C	bias_e_value=4122740	bias_p_value=0.830606	consensus_reject=FREQUENCY_CUTOFF	consensus_score=426.9	fisher_strand_p_value=0.477692	frequency=3.120e-01	ks_quality_p_value=1	major_base=G	major_cov=88/73	major_frequency=6.880e-01	minor_base=C	minor_cov=44/29	new_cov=44/29	polymorphism_frequency=3.120e-01	polymorphism_score=222.5	prediction=polymorphism	ref_cov=88/73	total_cov=132/103
RA	589	.	Xen14_85	2942	0	A	G	bias_e_value=4120510	bias_p_value=0.830156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.3	fisher_strand_p_value=0.477083	frequency=3.147e-01	ks_quality_p_value=1	major_base=A	major_cov=87/72	major_frequency=6.853e-01	minor_base=G	minor_cov=44/29	new_cov=44/29	polymorphism_frequency=3.147e-01	polymorphism_score=142.9	prediction=polymorphism	ref_cov=87/72	total_cov=131/101
RA	590	.	Xen14_85	2962	0	G	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.8	fisher_strand_p_value=1	frequency=3.416e-01	ks_quality_p_value=0.999978	major_base=G	major_cov=91/69	major_frequency=6.584e-01	minor_base=A	minor_cov=48/35	new_cov=48/35	polymorphism_frequency=3.416e-01	polymorphism_score=171.0	prediction=polymorphism	ref_cov=91/69	total_cov=140/104
RA	591	.	Xen14_85	2965	0	A	G	bias_e_value=4637900	bias_p_value=0.934394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.8	fisher_strand_p_value=0.687027	frequency=3.387e-01	ks_quality_p_value=0.9612	major_base=A	major_cov=91/73	major_frequency=6.613e-01	minor_base=G	minor_cov=49/35	new_cov=49/35	polymorphism_frequency=3.387e-01	polymorphism_score=174.3	prediction=polymorphism	ref_cov=91/73	total_cov=140/108
RA	592	.	Xen14_85	2969	0	T	C	bias_e_value=4933420	bias_p_value=0.993933	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.5	fisher_strand_p_value=0.891886	frequency=3.443e-01	ks_quality_p_value=1	major_base=T	major_cov=91/69	major_frequency=6.557e-01	minor_base=C	minor_cov=49/35	new_cov=49/35	polymorphism_frequency=3.443e-01	polymorphism_score=171.0	prediction=polymorphism	ref_cov=91/69	total_cov=140/104
RA	593	.	Xen14_85	2971	0	C	G	bias_e_value=4839500	bias_p_value=0.97501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=417.1	fisher_strand_p_value=0.784935	frequency=3.402e-01	ks_quality_p_value=1	major_base=C	major_cov=91/70	major_frequency=6.598e-01	minor_base=G	minor_cov=49/34	new_cov=49/34	polymorphism_frequency=3.402e-01	polymorphism_score=258.5	prediction=polymorphism	ref_cov=91/70	total_cov=140/105
RA	594	.	Xen14_85	2992	0	T	C	bias_e_value=4932250	bias_p_value=0.993696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.0	fisher_strand_p_value=0.891867	frequency=3.542e-01	ks_quality_p_value=0.997726	major_base=T	major_cov=87/68	major_frequency=6.458e-01	minor_base=C	minor_cov=49/36	new_cov=49/36	polymorphism_frequency=3.542e-01	polymorphism_score=174.6	prediction=polymorphism	ref_cov=87/68	total_cov=136/105
RA	595	.	Xen14_85	3019	0	G	A	bias_e_value=3825500	bias_p_value=0.77072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.3	fisher_strand_p_value=0.407468	frequency=3.432e-01	ks_quality_p_value=0.993002	major_base=G	major_cov=84/71	major_frequency=6.568e-01	minor_base=A	minor_cov=49/32	new_cov=49/32	polymorphism_frequency=3.432e-01	polymorphism_score=164.2	prediction=polymorphism	ref_cov=84/71	total_cov=134/103
RA	596	.	Xen14_85	3031	0	C	T	bias_e_value=3193650	bias_p_value=0.643423	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.0	fisher_strand_p_value=0.320381	frequency=3.378e-01	ks_quality_p_value=0.891237	major_base=C	major_cov=81/68	major_frequency=6.622e-01	minor_base=T	minor_cov=47/29	new_cov=47/29	polymorphism_frequency=3.378e-01	polymorphism_score=156.4	prediction=polymorphism	ref_cov=81/68	total_cov=128/97
RA	597	.	Xen14_85	6486	0	A	G	bias_e_value=3174510	bias_p_value=0.639565	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.4	fisher_strand_p_value=0.64642	frequency=2.603e-01	ks_quality_p_value=0.436978	major_base=A	major_cov=83/79	major_frequency=7.397e-01	minor_base=G	minor_cov=27/30	new_cov=27/30	polymorphism_frequency=2.603e-01	polymorphism_score=109.9	prediction=polymorphism	ref_cov=83/79	total_cov=110/111
RA	598	.	Xen14_85	6588	0	T	C	bias_e_value=4958970	bias_p_value=0.999079	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.0	fisher_strand_p_value=1	frequency=5.278e-01	ks_quality_p_value=0.957397	major_base=C	major_cov=66/86	major_frequency=5.278e-01	minor_base=T	minor_cov=59/77	new_cov=66/86	polymorphism_frequency=5.278e-01	polymorphism_score=305.6	prediction=polymorphism	ref_cov=59/77	total_cov=125/163
RA	599	.	Xen14_85	6615	0	A	G	bias_e_value=4804470	bias_p_value=0.967953	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.9	fisher_strand_p_value=0.809124	frequency=5.415e-01	ks_quality_p_value=0.936514	major_base=G	major_cov=68/82	major_frequency=5.415e-01	minor_base=A	minor_cov=60/67	new_cov=68/82	polymorphism_frequency=5.415e-01	polymorphism_score=285.5	prediction=polymorphism	ref_cov=60/67	total_cov=128/149
RA	600	.	Xen14_85	6678	0	G	A	bias_e_value=4696770	bias_p_value=0.946254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.6	fisher_strand_p_value=0.704777	frequency=5.339e-01	ks_quality_p_value=0.979876	major_base=A	major_cov=63/71	major_frequency=5.339e-01	minor_base=G	minor_cov=52/65	new_cov=63/71	polymorphism_frequency=5.339e-01	polymorphism_score=265.5	prediction=polymorphism	ref_cov=52/65	total_cov=115/136
RA	601	.	Xen14_85	6693	0	T	A	bias_e_value=2797030	bias_p_value=0.563515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.6	fisher_strand_p_value=0.226945	frequency=4.842e-01	ks_quality_p_value=1	major_base=T	major_cov=49/65	major_frequency=5.158e-01	minor_base=A	minor_cov=55/52	new_cov=55/52	polymorphism_frequency=4.842e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=49/65	total_cov=104/119
RA	602	.	Xen14_85	6696	0	C	T	bias_e_value=3171870	bias_p_value=0.639034	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.0	fisher_strand_p_value=0.282051	frequency=4.820e-01	ks_quality_p_value=1	major_base=C	major_cov=50/65	major_frequency=5.180e-01	minor_base=T	minor_cov=55/52	new_cov=55/52	polymorphism_frequency=4.820e-01	polymorphism_score=239.8	prediction=polymorphism	ref_cov=50/65	total_cov=105/119
RA	603	.	Xen14_85	6698	0	G	T	bias_e_value=3696800	bias_p_value=0.744791	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.0	fisher_strand_p_value=0.422118	frequency=4.777e-01	ks_quality_p_value=0.893174	major_base=G	major_cov=53/64	major_frequency=5.223e-01	minor_base=T	minor_cov=55/52	new_cov=55/52	polymorphism_frequency=4.777e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=53/64	total_cov=108/116
RA	604	.	Xen14_85	6699	0	G	T	bias_e_value=3902240	bias_p_value=0.786182	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.2	fisher_strand_p_value=0.422118	frequency=4.777e-01	ks_quality_p_value=1	major_base=G	major_cov=53/64	major_frequency=5.223e-01	minor_base=T	minor_cov=55/52	new_cov=55/52	polymorphism_frequency=4.777e-01	polymorphism_score=315.7	prediction=polymorphism	ref_cov=53/64	total_cov=108/116
RA	605	.	Xen14_85	6708	0	G	A	bias_e_value=2511520	bias_p_value=0.505993	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.1	fisher_strand_p_value=0.19516	frequency=5.169e-01	ks_quality_p_value=0.974961	major_base=A	major_cov=64/58	major_frequency=5.169e-01	minor_base=G	minor_cov=50/64	new_cov=64/58	polymorphism_frequency=5.169e-01	polymorphism_score=258.5	prediction=polymorphism	ref_cov=50/64	total_cov=116/122
RA	606	.	Xen14_85	6717	0	C	A	bias_e_value=4930320	bias_p_value=0.993308	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.8	fisher_strand_p_value=0.886567	frequency=2.974e-01	ks_quality_p_value=1	major_base=C	major_cov=80/83	major_frequency=7.026e-01	minor_base=A	minor_cov=33/36	new_cov=33/36	polymorphism_frequency=2.974e-01	polymorphism_score=184.4	prediction=polymorphism	ref_cov=80/83	total_cov=113/119
RA	607	.	Xen14_85	6729	0	G	A	bias_e_value=725423	bias_p_value=0.14615	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.4	fisher_strand_p_value=0.0331699	frequency=5.244e-01	ks_quality_p_value=1	major_base=A	major_cov=70/48	major_frequency=5.244e-01	minor_base=G	minor_cov=48/59	new_cov=70/48	polymorphism_frequency=5.244e-01	polymorphism_score=240.4	prediction=polymorphism	ref_cov=48/59	total_cov=118/108
RA	608	.	Xen14_85	6744	0	A	C	bias_e_value=621950	bias_p_value=0.125304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.4	fisher_strand_p_value=0.0283462	frequency=5.514e-01	ks_quality_p_value=0.960155	major_base=C	major_cov=72/46	major_frequency=5.514e-01	minor_base=A	minor_cov=44/52	new_cov=72/46	polymorphism_frequency=5.514e-01	polymorphism_score=281.2	prediction=polymorphism	ref_cov=44/52	total_cov=117/99
RA	609	.	Xen14_85	6766	0	A	C	bias_e_value=2114650	bias_p_value=0.426036	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.2	fisher_strand_p_value=0.145538	frequency=5.066e-01	ks_quality_p_value=1	major_base=C	major_cov=69/47	major_frequency=5.066e-01	minor_base=A	minor_cov=56/57	new_cov=69/47	polymorphism_frequency=5.066e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/57	total_cov=125/104
RA	610	.	Xen14_85	6783	0	G	C	bias_e_value=2019850	bias_p_value=0.406938	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=0.170509	frequency=5.047e-01	ks_quality_p_value=0.79645	major_base=C	major_cov=63/45	major_frequency=5.047e-01	minor_base=G	minor_cov=51/55	new_cov=63/45	polymorphism_frequency=5.047e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=51/55	total_cov=114/100
RA	611	.	Xen14_85	6793	0	T	A	bias_e_value=4681000	bias_p_value=0.943078	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.4	fisher_strand_p_value=0.682155	frequency=5.046e-01	ks_quality_p_value=1	major_base=A	major_cov=61/48	major_frequency=5.046e-01	minor_base=T	minor_cov=56/51	new_cov=61/48	polymorphism_frequency=5.046e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/51	total_cov=117/99
RA	612	.	Xen14_85	6804	0	T	C	bias_e_value=4123040	bias_p_value=0.830665	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.1	fisher_strand_p_value=0.494177	frequency=5.231e-01	ks_quality_p_value=0.966804	major_base=C	major_cov=66/47	major_frequency=5.231e-01	minor_base=T	minor_cov=55/48	new_cov=66/47	polymorphism_frequency=5.231e-01	polymorphism_score=232.5	prediction=polymorphism	ref_cov=55/48	total_cov=121/95
RA	613	.	Xen14_85	6821	0	C	T	bias_e_value=4281570	bias_p_value=0.862604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.0	fisher_strand_p_value=0.52394	frequency=5.339e-01	ks_quality_p_value=1	major_base=T	major_cov=81/53	major_frequency=5.339e-01	minor_base=C	minor_cov=66/51	new_cov=81/53	polymorphism_frequency=5.339e-01	polymorphism_score=263.6	prediction=polymorphism	ref_cov=66/51	total_cov=147/104
RA	614	.	Xen14_85	6822	0	A	G	bias_e_value=4695780	bias_p_value=0.946056	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=0.702844	frequency=5.234e-01	ks_quality_p_value=0.981809	major_base=G	major_cov=81/53	major_frequency=5.234e-01	minor_base=A	minor_cov=70/52	new_cov=81/53	polymorphism_frequency=5.234e-01	polymorphism_score=274.7	prediction=polymorphism	ref_cov=70/52	total_cov=151/105
RA	615	.	Xen14_85	6837	0	T	C	bias_e_value=2838820	bias_p_value=0.571935	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.2	fisher_strand_p_value=0.232671	frequency=5.322e-01	ks_quality_p_value=1	major_base=C	major_cov=101/56	major_frequency=5.322e-01	minor_base=T	minor_cov=79/59	new_cov=101/56	polymorphism_frequency=5.322e-01	polymorphism_score=306.5	prediction=polymorphism	ref_cov=79/59	total_cov=180/115
RA	616	.	Xen14_85	6843	0	A	G	bias_e_value=3202910	bias_p_value=0.645288	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.8	fisher_strand_p_value=0.287027	frequency=5.351e-01	ks_quality_p_value=1	major_base=G	major_cov=102/58	major_frequency=5.351e-01	minor_base=A	minor_cov=80/59	new_cov=102/58	polymorphism_frequency=5.351e-01	polymorphism_score=308.7	prediction=polymorphism	ref_cov=80/59	total_cov=182/117
RA	617	.	Xen14_85	6852	0	C	T	bias_e_value=3021840	bias_p_value=0.608808	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.9	fisher_strand_p_value=0.282394	frequency=5.377e-01	ks_quality_p_value=0.916942	major_base=T	major_cov=98/59	major_frequency=5.377e-01	minor_base=C	minor_cov=75/60	new_cov=98/59	polymorphism_frequency=5.377e-01	polymorphism_score=303.2	prediction=polymorphism	ref_cov=75/60	total_cov=173/119
RA	618	.	Xen14_85	6858	0	A	G	bias_e_value=4115620	bias_p_value=0.829171	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.5	fisher_strand_p_value=0.478165	frequency=5.356e-01	ks_quality_p_value=0.994961	major_base=G	major_cov=95/63	major_frequency=5.356e-01	minor_base=A	minor_cov=76/61	new_cov=95/63	polymorphism_frequency=5.356e-01	polymorphism_score=303.2	prediction=polymorphism	ref_cov=76/61	total_cov=171/124
RA	619	.	Xen14_85	6867	0	G	A	bias_e_value=4940570	bias_p_value=0.995373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.9	fisher_strand_p_value=0.905359	frequency=5.479e-01	ks_quality_p_value=1	major_base=A	major_cov=93/67	major_frequency=5.479e-01	minor_base=G	minor_cov=75/57	new_cov=93/67	polymorphism_frequency=5.479e-01	polymorphism_score=290.5	prediction=polymorphism	ref_cov=75/57	total_cov=169/124
RA	620	.	Xen14_85	6876	0	C	T	bias_e_value=4963530	bias_p_value=0.999999	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.4	fisher_strand_p_value=1	frequency=5.667e-01	ks_quality_p_value=0.998523	major_base=T	major_cov=95/75	major_frequency=5.667e-01	minor_base=C	minor_cov=72/58	new_cov=95/75	polymorphism_frequency=5.667e-01	polymorphism_score=285.7	prediction=polymorphism	ref_cov=72/58	total_cov=167/133
RA	621	.	Xen14_85	6912	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.1	fisher_strand_p_value=1	frequency=5.951e-01	ks_quality_p_value=1	major_base=C	major_cov=93/76	major_frequency=5.951e-01	minor_base=T	minor_cov=64/51	new_cov=93/76	polymorphism_frequency=5.951e-01	polymorphism_score=241.2	prediction=polymorphism	ref_cov=64/51	total_cov=157/127
RA	622	.	Xen14_85	6915	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.7	fisher_strand_p_value=1	frequency=5.833e-01	ks_quality_p_value=1	major_base=C	major_cov=93/75	major_frequency=5.833e-01	minor_base=T	minor_cov=67/53	new_cov=93/75	polymorphism_frequency=5.833e-01	polymorphism_score=252.0	prediction=polymorphism	ref_cov=67/53	total_cov=160/129
RA	623	.	Xen14_85	6926	0	C	T	bias_e_value=4941550	bias_p_value=0.99557	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=0.907357	frequency=5.667e-01	ks_quality_p_value=1	major_base=T	major_cov=90/80	major_frequency=5.667e-01	minor_base=C	minor_cov=70/60	new_cov=90/80	polymorphism_frequency=5.667e-01	polymorphism_score=275.0	prediction=polymorphism	ref_cov=70/60	total_cov=160/140
RA	624	.	Xen14_85	6930	0	G	A	bias_e_value=4762180	bias_p_value=0.959432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.7	fisher_strand_p_value=0.729027	frequency=5.400e-01	ks_quality_p_value=1	major_base=A	major_cov=89/73	major_frequency=5.400e-01	minor_base=G	minor_cov=73/65	new_cov=89/73	polymorphism_frequency=5.400e-01	polymorphism_score=299.7	prediction=polymorphism	ref_cov=73/65	total_cov=163/139
RA	625	.	Xen14_85	6936	0	G	A	bias_e_value=4777110	bias_p_value=0.962441	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.6	fisher_strand_p_value=0.738751	frequency=5.549e-01	ks_quality_p_value=1	major_base=A	major_cov=102/80	major_frequency=5.549e-01	minor_base=G	minor_cov=79/67	new_cov=102/80	polymorphism_frequency=5.549e-01	polymorphism_score=310.4	prediction=polymorphism	ref_cov=79/67	total_cov=181/147
RA	626	.	Xen14_85	6978	0	C	T	bias_e_value=2491110	bias_p_value=0.501882	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.6	fisher_strand_p_value=0.187806	frequency=5.341e-01	ks_quality_p_value=1	major_base=T	major_cov=68/81	major_frequency=5.341e-01	minor_base=C	minor_cov=70/60	new_cov=68/81	polymorphism_frequency=5.341e-01	polymorphism_score=284.4	prediction=polymorphism	ref_cov=70/60	total_cov=138/142
RA	627	.	Xen14_85	6981	0	C	T	bias_e_value=2434620	bias_p_value=0.4905	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.9	fisher_strand_p_value=0.181073	frequency=5.600e-01	ks_quality_p_value=1	major_base=T	major_cov=68/86	major_frequency=5.600e-01	minor_base=C	minor_cov=64/57	new_cov=68/86	polymorphism_frequency=5.600e-01	polymorphism_score=236.2	prediction=polymorphism	ref_cov=64/57	total_cov=132/143
RA	628	.	Xen14_85	7107	0	A	G	bias_e_value=2011180	bias_p_value=0.405191	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.5	fisher_strand_p_value=0.489461	frequency=3.121e-01	ks_quality_p_value=0.275667	major_base=A	major_cov=59/49	major_frequency=6.879e-01	minor_base=G	minor_cov=30/19	new_cov=30/19	polymorphism_frequency=3.121e-01	polymorphism_score=97.3	prediction=polymorphism	ref_cov=59/49	total_cov=89/68
RA	629	.	Xen14_85	7116	0	G	A	bias_e_value=1164890	bias_p_value=0.234689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.3	fisher_strand_p_value=0.710348	frequency=2.635e-01	ks_quality_p_value=0.0874284	major_base=G	major_cov=60/49	major_frequency=7.365e-01	minor_base=A	minor_cov=23/16	new_cov=23/16	polymorphism_frequency=2.635e-01	polymorphism_score=72.6	prediction=polymorphism	ref_cov=60/49	total_cov=83/67
RA	630	.	Xen14_85	7119	0	A	C	bias_e_value=1788860	bias_p_value=0.3604	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.9	fisher_strand_p_value=0.579454	frequency=2.685e-01	ks_quality_p_value=0.195818	major_base=A	major_cov=59/50	major_frequency=7.315e-01	minor_base=C	minor_cov=24/16	new_cov=24/16	polymorphism_frequency=2.685e-01	polymorphism_score=108.7	prediction=polymorphism	ref_cov=59/50	total_cov=83/67
RA	631	.	Xen14_85	7122	0	A	G	bias_e_value=3290530	bias_p_value=0.662941	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.8	fisher_strand_p_value=0.709462	frequency=2.390e-01	ks_quality_p_value=0.424907	major_base=A	major_cov=64/57	major_frequency=7.610e-01	minor_base=G	minor_cov=22/16	new_cov=22/16	polymorphism_frequency=2.390e-01	polymorphism_score=68.3	prediction=polymorphism	ref_cov=64/57	total_cov=86/73
RA	632	.	Xen14_85	7463	0	T	C	bias_e_value=82022	bias_p_value=0.0165249	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.6	fisher_strand_p_value=0.00568433	frequency=2.674e-01	ks_quality_p_value=0.411951	major_base=T	major_cov=66/60	major_frequency=7.326e-01	minor_base=C	minor_cov=13/33	new_cov=13/33	polymorphism_frequency=2.674e-01	polymorphism_score=87.3	prediction=polymorphism	ref_cov=66/60	total_cov=79/93
RA	633	.	Xen14_85	7567	0	C	T	bias_e_value=4726620	bias_p_value=0.952268	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.4	fisher_strand_p_value=0.725625	frequency=5.354e-01	ks_quality_p_value=0.974866	major_base=T	major_cov=90/69	major_frequency=5.354e-01	minor_base=C	minor_cov=81/57	new_cov=90/69	polymorphism_frequency=5.354e-01	polymorphism_score=308.0	prediction=polymorphism	ref_cov=81/57	total_cov=171/126
RA	634	.	Xen14_85	7570	0	G	A	bias_e_value=4647340	bias_p_value=0.936295	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.4	fisher_strand_p_value=0.724061	frequency=5.390e-01	ks_quality_p_value=0.918417	major_base=A	major_cov=90/69	major_frequency=5.390e-01	minor_base=G	minor_cov=80/56	new_cov=90/69	polymorphism_frequency=5.390e-01	polymorphism_score=307.8	prediction=polymorphism	ref_cov=80/56	total_cov=170/125
RA	635	.	Xen14_85	7573	0	C	T	bias_e_value=4641890	bias_p_value=0.935198	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=0.724861	frequency=5.318e-01	ks_quality_p_value=0.913713	major_base=T	major_cov=90/69	major_frequency=5.318e-01	minor_base=C	minor_cov=83/57	new_cov=90/69	polymorphism_frequency=5.318e-01	polymorphism_score=313.0	prediction=polymorphism	ref_cov=83/57	total_cov=173/126
RA	636	.	Xen14_85	7581	0	T	C	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.0	fisher_strand_p_value=1	frequency=5.385e-01	ks_quality_p_value=1	major_base=C	major_cov=98/70	major_frequency=5.385e-01	minor_base=T	minor_cov=84/60	new_cov=98/70	polymorphism_frequency=5.385e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=84/60	total_cov=182/130
RA	637	.	Xen14_85	7585	0	A	G	bias_e_value=4963500	bias_p_value=0.999993	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.4	fisher_strand_p_value=1	frequency=5.442e-01	ks_quality_p_value=0.996306	major_base=G	major_cov=96/64	major_frequency=5.442e-01	minor_base=A	minor_cov=81/53	new_cov=96/64	polymorphism_frequency=5.442e-01	polymorphism_score=297.7	prediction=polymorphism	ref_cov=81/53	total_cov=177/117
RA	638	.	Xen14_85	7588	0	T	C	bias_e_value=4155840	bias_p_value=0.837275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.6	fisher_strand_p_value=0.719899	frequency=5.372e-01	ks_quality_p_value=0.676256	major_base=C	major_cov=96/63	major_frequency=5.372e-01	minor_base=T	minor_cov=86/51	new_cov=96/63	polymorphism_frequency=5.372e-01	polymorphism_score=306.7	prediction=polymorphism	ref_cov=86/51	total_cov=182/115
RA	639	.	Xen14_85	7609	0	A	G	bias_e_value=4202710	bias_p_value=0.846718	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.4	fisher_strand_p_value=0.549542	frequency=5.150e-01	ks_quality_p_value=0.910227	major_base=G	major_cov=102/53	major_frequency=5.150e-01	minor_base=A	minor_cov=91/55	new_cov=102/53	polymorphism_frequency=5.150e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/55	total_cov=193/108
RA	640	.	Xen14_85	7645	0	T	C	bias_e_value=4565440	bias_p_value=0.919797	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.0	fisher_strand_p_value=0.62723	frequency=4.897e-01	ks_quality_p_value=1	major_base=T	major_cov=92/57	major_frequency=5.103e-01	minor_base=C	minor_cov=93/50	new_cov=93/50	polymorphism_frequency=4.897e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=92/57	total_cov=185/107
RA	641	.	Xen14_85	7681	0	G	T	bias_e_value=4685300	bias_p_value=0.943943	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.1	fisher_strand_p_value=0.723339	frequency=5.065e-01	ks_quality_p_value=0.946202	major_base=T	major_cov=99/56	major_frequency=5.065e-01	minor_base=G	minor_cov=93/58	new_cov=99/56	polymorphism_frequency=5.065e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=93/58	total_cov=192/114
RA	642	.	Xen14_85	7699	0	A	G	bias_e_value=3169610	bias_p_value=0.638579	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.9	fisher_strand_p_value=0.290582	frequency=5.184e-01	ks_quality_p_value=0.969405	major_base=G	major_cov=96/59	major_frequency=5.184e-01	minor_base=A	minor_cov=80/64	new_cov=96/59	polymorphism_frequency=5.184e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=80/64	total_cov=176/123
RA	643	.	Xen14_85	7801	0	T	G	bias_e_value=3379240	bias_p_value=0.680813	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.4	fisher_strand_p_value=0.316675	frequency=3.318e-01	ks_quality_p_value=1	major_base=T	major_cov=74/71	major_frequency=6.682e-01	minor_base=G	minor_cov=42/30	new_cov=42/30	polymorphism_frequency=3.318e-01	polymorphism_score=200.8	prediction=polymorphism	ref_cov=74/71	total_cov=116/101
RA	644	.	Xen14_85	7816	0	A	G	bias_e_value=3489430	bias_p_value=0.703012	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.5	fisher_strand_p_value=0.33651	frequency=2.640e-01	ks_quality_p_value=1	major_base=A	major_cov=72/73	major_frequency=7.360e-01	minor_base=G	minor_cov=30/22	new_cov=30/22	polymorphism_frequency=2.640e-01	polymorphism_score=99.4	prediction=polymorphism	ref_cov=72/73	total_cov=102/95
RA	645	.	Xen14_85	7828	0	A	G	bias_e_value=4186910	bias_p_value=0.843532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.7	fisher_strand_p_value=1	frequency=2.079e-01	ks_quality_p_value=0.49564	major_base=A	major_cov=70/71	major_frequency=7.921e-01	minor_base=G	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=2.079e-01	polymorphism_score=63.8	prediction=polymorphism	ref_cov=70/71	total_cov=88/90
RA	646	.	Xen14_85	7891	0	C	T	bias_e_value=2.28421e-09	bias_p_value=4.60198e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.9	fisher_strand_p_value=1.15038e-17	frequency=2.868e-01	ks_quality_p_value=1	major_base=C	major_cov=21/71	major_frequency=7.132e-01	minor_base=T	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.868e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=21/71	total_cov=63/71
RA	647	.	Xen14_85	8080	0	A	G	bias_e_value=3903210	bias_p_value=0.786377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.9	fisher_strand_p_value=0.422344	frequency=2.941e-01	ks_quality_p_value=1	major_base=A	major_cov=70/62	major_frequency=7.059e-01	minor_base=G	minor_cov=33/22	new_cov=33/22	polymorphism_frequency=2.941e-01	polymorphism_score=106.3	prediction=polymorphism	ref_cov=70/62	total_cov=103/84
RA	648	.	Xen14_85	8082	0	C	A	bias_e_value=985844	bias_p_value=0.198617	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.7	fisher_strand_p_value=0.419455	frequency=2.973e-01	ks_quality_p_value=0.118273	major_base=C	major_cov=68/62	major_frequency=7.027e-01	minor_base=A	minor_cov=33/22	new_cov=33/22	polymorphism_frequency=2.973e-01	polymorphism_score=148.0	prediction=polymorphism	ref_cov=68/62	total_cov=101/84
RA	649	.	Xen14_85	8169	0	C	A	bias_e_value=4368760	bias_p_value=0.88017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.3	fisher_strand_p_value=0.563758	frequency=3.364e-01	ks_quality_p_value=0.979643	major_base=C	major_cov=81/61	major_frequency=6.636e-01	minor_base=A	minor_cov=38/34	new_cov=38/34	polymorphism_frequency=3.364e-01	polymorphism_score=196.7	prediction=polymorphism	ref_cov=81/61	total_cov=119/96
RA	650	.	Xen14_86	362	0	A	C	bias_e_value=3363400	bias_p_value=0.677621	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.6	fisher_strand_p_value=0.31391	frequency=5.177e-01	ks_quality_p_value=1	major_base=C	major_cov=42/31	major_frequency=5.177e-01	minor_base=A	minor_cov=33/35	new_cov=42/31	polymorphism_frequency=5.177e-01	polymorphism_score=197.4	prediction=polymorphism	ref_cov=33/35	total_cov=75/66
RA	651	.	Xen14_86	375	0	G	A	bias_e_value=2099160	bias_p_value=0.422915	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.5	fisher_strand_p_value=0.506249	frequency=5.172e-01	ks_quality_p_value=0.284294	major_base=A	major_cov=45/30	major_frequency=5.172e-01	minor_base=G	minor_cov=38/32	new_cov=45/30	polymorphism_frequency=5.172e-01	polymorphism_score=158.6	prediction=polymorphism	ref_cov=38/32	total_cov=83/62
RA	652	.	Xen14_86	385	0	C	A	bias_e_value=874051	bias_p_value=0.176094	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.5	fisher_strand_p_value=0.327126	frequency=4.933e-01	ks_quality_p_value=0.129309	major_base=C	major_cov=34/42	major_frequency=5.067e-01	minor_base=A	minor_cov=40/34	new_cov=40/34	polymorphism_frequency=4.933e-01	polymorphism_score=219.4	prediction=polymorphism	ref_cov=34/42	total_cov=74/77
RA	653	.	Xen14_86	563	0	A	T	bias_e_value=32575	bias_p_value=0.00656286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.3	fisher_strand_p_value=0.000808159	frequency=5.879e-01	ks_quality_p_value=1	major_base=T	major_cov=30/67	major_frequency=5.879e-01	minor_base=A	minor_cov=39/29	new_cov=30/67	polymorphism_frequency=5.879e-01	polymorphism_score=197.7	prediction=polymorphism	ref_cov=39/29	total_cov=69/96
RA	654	.	Xen14_86	649	0	A	G	bias_e_value=3234050	bias_p_value=0.651561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.3	fisher_strand_p_value=0.292088	frequency=2.375e-01	ks_quality_p_value=1	major_base=A	major_cov=38/23	major_frequency=7.625e-01	minor_base=G	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.375e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=38/23	total_cov=47/33
RA	655	.	Xen14_86	651	0	T	C	bias_e_value=1915100	bias_p_value=0.385834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.4	fisher_strand_p_value=0.301268	frequency=2.346e-01	ks_quality_p_value=0.416358	major_base=T	major_cov=38/24	major_frequency=7.654e-01	minor_base=C	minor_cov=9/10	new_cov=9/10	polymorphism_frequency=2.346e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=38/24	total_cov=47/34
RA	656	.	Xen14_86	3435	0	A	C	bias_e_value=2515040	bias_p_value=0.506704	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.0	fisher_strand_p_value=0.862507	frequency=4.370e-01	ks_quality_p_value=0.221102	major_base=A	major_cov=38/38	major_frequency=5.630e-01	minor_base=C	minor_cov=31/28	new_cov=31/28	polymorphism_frequency=4.370e-01	polymorphism_score=179.5	prediction=polymorphism	ref_cov=38/38	total_cov=69/66
RA	657	.	Xen14_86	9216	0	A	G	bias_e_value=295392	bias_p_value=0.0595125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.8	fisher_strand_p_value=0.0541428	frequency=4.674e-01	ks_quality_p_value=0.198689	major_base=A	major_cov=61/37	major_frequency=5.326e-01	minor_base=G	minor_cov=41/45	new_cov=41/45	polymorphism_frequency=4.674e-01	polymorphism_score=191.5	prediction=polymorphism	ref_cov=61/37	total_cov=103/82
RA	658	.	Xen14_86	9243	0	A	G	bias_e_value=1447380	bias_p_value=0.291602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.0838139	frequency=4.639e-01	ks_quality_p_value=1	major_base=A	major_cov=64/40	major_frequency=5.361e-01	minor_base=G	minor_cov=44/46	new_cov=44/46	polymorphism_frequency=4.639e-01	polymorphism_score=200.6	prediction=polymorphism	ref_cov=64/40	total_cov=108/86
RA	659	.	Xen14_86	9278	0	G	T	bias_e_value=2868130	bias_p_value=0.577839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.2	fisher_strand_p_value=0.236744	frequency=4.309e-01	ks_quality_p_value=1	major_base=G	major_cov=63/44	major_frequency=5.691e-01	minor_base=T	minor_cov=40/41	new_cov=40/41	polymorphism_frequency=4.309e-01	polymorphism_score=231.5	prediction=polymorphism	ref_cov=63/44	total_cov=103/86
RA	660	.	Xen14_86	9295	0	G	A	bias_e_value=1630020	bias_p_value=0.328399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.1	fisher_strand_p_value=0.183725	frequency=4.332e-01	ks_quality_p_value=0.539902	major_base=G	major_cov=62/44	major_frequency=5.668e-01	minor_base=A	minor_cov=39/42	new_cov=39/42	polymorphism_frequency=4.332e-01	polymorphism_score=178.3	prediction=polymorphism	ref_cov=62/44	total_cov=101/86
RA	661	.	Xen14_86	9425	0	T	C	bias_e_value=713804	bias_p_value=0.143809	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=0.0324847	frequency=4.371e-01	ks_quality_p_value=1	major_base=T	major_cov=30/55	major_frequency=5.629e-01	minor_base=C	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=4.371e-01	polymorphism_score=143.9	prediction=polymorphism	ref_cov=30/55	total_cov=65/86
RA	662	.	Xen14_86	9448	0	T	A	bias_e_value=215807	bias_p_value=0.0434785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.6	fisher_strand_p_value=0.0183009	frequency=3.893e-01	ks_quality_p_value=0.401816	major_base=T	major_cov=36/55	major_frequency=6.107e-01	minor_base=A	minor_cov=35/23	new_cov=35/23	polymorphism_frequency=3.893e-01	polymorphism_score=165.4	prediction=polymorphism	ref_cov=36/55	total_cov=71/78
RA	663	.	Xen14_86	9457	0	G	A	bias_e_value=503709	bias_p_value=0.101482	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.9	fisher_strand_p_value=0.0621955	frequency=3.889e-01	ks_quality_p_value=0.334958	major_base=G	major_cov=36/52	major_frequency=6.111e-01	minor_base=A	minor_cov=32/24	new_cov=32/24	polymorphism_frequency=3.889e-01	polymorphism_score=117.9	prediction=polymorphism	ref_cov=36/52	total_cov=68/76
RA	664	.	Xen14_86	9472	0	C	T	bias_e_value=352379	bias_p_value=0.0709936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.9	fisher_strand_p_value=0.0910252	frequency=3.851e-01	ks_quality_p_value=0.146718	major_base=C	major_cov=36/55	major_frequency=6.149e-01	minor_base=T	minor_cov=31/26	new_cov=31/26	polymorphism_frequency=3.851e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=36/55	total_cov=67/81
RA	665	.	Xen14_86	9473	0	A	G	bias_e_value=1504990	bias_p_value=0.303208	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=0.0885485	frequency=3.878e-01	ks_quality_p_value=1	major_base=A	major_cov=35/55	major_frequency=6.122e-01	minor_base=G	minor_cov=31/26	new_cov=31/26	polymorphism_frequency=3.878e-01	polymorphism_score=119.3	prediction=polymorphism	ref_cov=35/55	total_cov=66/81
RA	666	.	Xen14_86	9497	0	C	T	bias_e_value=1644880	bias_p_value=0.331392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.3	fisher_strand_p_value=0.100493	frequency=3.910e-01	ks_quality_p_value=1	major_base=C	major_cov=42/53	major_frequency=6.090e-01	minor_base=T	minor_cov=36/25	new_cov=36/25	polymorphism_frequency=3.910e-01	polymorphism_score=127.3	prediction=polymorphism	ref_cov=42/53	total_cov=78/78
RA	667	.	Xen14_86	9575	0	G	A	bias_e_value=755998	bias_p_value=0.15231	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.9	fisher_strand_p_value=0.612709	frequency=3.893e-01	ks_quality_p_value=0.0571118	major_base=G	major_cov=52/39	major_frequency=6.107e-01	minor_base=A	minor_cov=30/28	new_cov=30/28	polymorphism_frequency=3.893e-01	polymorphism_score=122.8	prediction=polymorphism	ref_cov=52/39	total_cov=82/67
RA	668	.	Xen14_86	9600	0	G	A	bias_e_value=711769	bias_p_value=0.143399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.2	fisher_strand_p_value=0.175881	frequency=4.069e-01	ks_quality_p_value=0.184018	major_base=G	major_cov=50/36	major_frequency=5.931e-01	minor_base=A	minor_cov=27/32	new_cov=27/32	polymorphism_frequency=4.069e-01	polymorphism_score=127.4	prediction=polymorphism	ref_cov=50/36	total_cov=78/68
RA	669	.	Xen14_86	9637	0	C	T	bias_e_value=105911	bias_p_value=0.0213379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.3	fisher_strand_p_value=0.0213105	frequency=3.750e-01	ks_quality_p_value=0.148163	major_base=C	major_cov=48/37	major_frequency=6.250e-01	minor_base=T	minor_cov=18/33	new_cov=18/33	polymorphism_frequency=3.750e-01	polymorphism_score=106.3	prediction=polymorphism	ref_cov=48/37	total_cov=66/70
RA	670	.	Xen14_86	9645	0	C	T	bias_e_value=57079.3	bias_p_value=0.0114997	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.4	fisher_strand_p_value=0.00619753	frequency=4.113e-01	ks_quality_p_value=0.248155	major_base=C	major_cov=47/36	major_frequency=5.887e-01	minor_base=T	minor_cov=19/39	new_cov=19/39	polymorphism_frequency=4.113e-01	polymorphism_score=122.5	prediction=polymorphism	ref_cov=47/36	total_cov=66/75
RA	671	.	Xen14_86	9674	0	G	T	bias_e_value=15959.4	bias_p_value=0.00321532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.1	fisher_strand_p_value=0.00143235	frequency=3.409e-01	ks_quality_p_value=0.251399	major_base=G	major_cov=45/42	major_frequency=6.591e-01	minor_base=T	minor_cov=10/35	new_cov=10/35	polymorphism_frequency=3.409e-01	polymorphism_score=121.8	prediction=polymorphism	ref_cov=45/42	total_cov=55/77
RA	672	.	Xen14_86	9694	0	T	C	bias_e_value=11842.9	bias_p_value=0.00238598	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.3	fisher_strand_p_value=0.000989685	frequency=3.680e-01	ks_quality_p_value=0.260229	major_base=T	major_cov=37/42	major_frequency=6.320e-01	minor_base=C	minor_cov=8/38	new_cov=8/38	polymorphism_frequency=3.680e-01	polymorphism_score=95.6	prediction=polymorphism	ref_cov=37/42	total_cov=45/80
RA	673	.	Xen14_86	9713	0	A	G	bias_e_value=254636	bias_p_value=0.0513014	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.7	fisher_strand_p_value=0.00898017	frequency=4.080e-01	ks_quality_p_value=1	major_base=A	major_cov=37/37	major_frequency=5.920e-01	minor_base=G	minor_cov=13/38	new_cov=13/38	polymorphism_frequency=4.080e-01	polymorphism_score=109.1	prediction=polymorphism	ref_cov=37/37	total_cov=50/75
RA	674	.	Xen14_86	9720	0	G	C	bias_e_value=121306	bias_p_value=0.0244394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.4	fisher_strand_p_value=0.0246365	frequency=3.902e-01	ks_quality_p_value=0.15034	major_base=G	major_cov=38/37	major_frequency=6.098e-01	minor_base=C	minor_cov=14/34	new_cov=14/34	polymorphism_frequency=3.902e-01	polymorphism_score=152.5	prediction=polymorphism	ref_cov=38/37	total_cov=52/71
RA	675	.	Xen14_86	9799	0	A	G	bias_e_value=2725510	bias_p_value=0.549106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.4	fisher_strand_p_value=1	frequency=4.344e-01	ks_quality_p_value=0.217367	major_base=A	major_cov=30/39	major_frequency=5.656e-01	minor_base=G	minor_cov=23/30	new_cov=23/30	polymorphism_frequency=4.344e-01	polymorphism_score=115.1	prediction=polymorphism	ref_cov=30/39	total_cov=53/69
RA	676	.	Xen14_86	9813	0	G	T	bias_e_value=4903750	bias_p_value=0.987954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.4	fisher_strand_p_value=0.848853	frequency=4.775e-01	ks_quality_p_value=1	major_base=G	major_cov=27/31	major_frequency=5.225e-01	minor_base=T	minor_cov=23/30	new_cov=23/30	polymorphism_frequency=4.775e-01	polymorphism_score=153.7	prediction=polymorphism	ref_cov=27/31	total_cov=50/61
RA	677	.	Xen14_86	10135	0	C	G	bias_e_value=852795	bias_p_value=0.171812	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.8	fisher_strand_p_value=0.0409532	frequency=2.692e-01	ks_quality_p_value=1	major_base=C	major_cov=29/28	major_frequency=7.308e-01	minor_base=G	minor_cov=5/16	new_cov=5/16	polymorphism_frequency=2.692e-01	polymorphism_score=59.1	prediction=polymorphism	ref_cov=29/28	total_cov=34/44
RA	678	.	Xen14_87	7371	0	T	G	bias_e_value=5.56405e-12	bias_p_value=1.12099e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=352.6	fisher_strand_p_value=2.42824e-20	frequency=2.109e-01	ks_quality_p_value=1	major_base=T	major_cov=100/16	major_frequency=7.891e-01	minor_base=G	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.109e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=100/16	total_cov=102/54
RA	679	.	Xen14_88	78	0	A	G	bias_e_value=2403090	bias_p_value=0.484149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.4	fisher_strand_p_value=0.359425	frequency=5.065e-01	ks_quality_p_value=0.493506	major_base=G	major_cov=19/20	major_frequency=5.065e-01	minor_base=A	minor_cov=14/24	new_cov=19/20	polymorphism_frequency=5.065e-01	polymorphism_score=83.5	prediction=polymorphism	ref_cov=14/24	total_cov=33/44
RA	680	.	Xen14_88	96	0	A	T	bias_e_value=4265360	bias_p_value=0.859338	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.7	fisher_strand_p_value=0.518926	frequency=4.382e-01	ks_quality_p_value=1	major_base=A	major_cov=20/30	major_frequency=5.618e-01	minor_base=T	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=4.382e-01	polymorphism_score=112.4	prediction=polymorphism	ref_cov=20/30	total_cov=39/50
RA	681	.	Xen14_88	99	0	C	T	bias_e_value=1317640	bias_p_value=0.265465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.1	fisher_strand_p_value=0.397454	frequency=4.333e-01	ks_quality_p_value=0.185019	major_base=C	major_cov=20/31	major_frequency=5.667e-01	minor_base=T	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=4.333e-01	polymorphism_score=83.2	prediction=polymorphism	ref_cov=20/31	total_cov=39/51
RA	682	.	Xen14_88	111	0	A	C	bias_e_value=3842910	bias_p_value=0.774227	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.9	fisher_strand_p_value=0.408514	frequency=4.124e-01	ks_quality_p_value=1	major_base=A	major_cov=23/34	major_frequency=5.876e-01	minor_base=C	minor_cov=20/20	new_cov=20/20	polymorphism_frequency=4.124e-01	polymorphism_score=111.1	prediction=polymorphism	ref_cov=23/34	total_cov=43/54
RA	683	.	Xen14_88	114	0	G	A	bias_e_value=931313	bias_p_value=0.187631	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.7	fisher_strand_p_value=0.533401	frequency=3.980e-01	ks_quality_p_value=0.0862339	major_base=G	major_cov=24/35	major_frequency=6.020e-01	minor_base=A	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.980e-01	polymorphism_score=81.0	prediction=polymorphism	ref_cov=24/35	total_cov=43/55
RA	684	.	Xen14_88	129	0	T	G	bias_e_value=2642870	bias_p_value=0.532457	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=0.545727	frequency=3.786e-01	ks_quality_p_value=0.378641	major_base=T	major_cov=27/37	major_frequency=6.214e-01	minor_base=G	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.786e-01	polymorphism_score=114.9	prediction=polymorphism	ref_cov=27/37	total_cov=46/57
RA	685	.	Xen14_88	130	0	A	G	bias_e_value=4349250	bias_p_value=0.876239	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.0	fisher_strand_p_value=0.545727	frequency=3.786e-01	ks_quality_p_value=1	major_base=A	major_cov=27/37	major_frequency=6.214e-01	minor_base=G	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.786e-01	polymorphism_score=80.6	prediction=polymorphism	ref_cov=27/37	total_cov=46/57
RA	686	.	Xen14_88	131	0	T	C	bias_e_value=639472	bias_p_value=0.128834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.5	fisher_strand_p_value=0.545727	frequency=3.786e-01	ks_quality_p_value=0.0516763	major_base=T	major_cov=27/37	major_frequency=6.214e-01	minor_base=C	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.786e-01	polymorphism_score=80.8	prediction=polymorphism	ref_cov=27/37	total_cov=46/57
RA	687	.	Xen14_88	135	0	C	A	bias_e_value=3470790	bias_p_value=0.699256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.5	fisher_strand_p_value=0.690637	frequency=3.750e-01	ks_quality_p_value=0.482276	major_base=C	major_cov=29/36	major_frequency=6.250e-01	minor_base=A	minor_cov=19/20	new_cov=19/20	polymorphism_frequency=3.750e-01	polymorphism_score=107.2	prediction=polymorphism	ref_cov=29/36	total_cov=48/56
RA	688	.	Xen14_88	9197	0	T	C	bias_e_value=1783380	bias_p_value=0.359296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.1	fisher_strand_p_value=0.112961	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=37/53	major_frequency=7.143e-01	minor_base=C	minor_cov=21/15	new_cov=21/15	polymorphism_frequency=2.857e-01	polymorphism_score=67.0	prediction=polymorphism	ref_cov=37/53	total_cov=58/68
RA	689	.	Xen14_88	9245	0	C	T	bias_e_value=278593	bias_p_value=0.0561279	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.3	fisher_strand_p_value=0.0773282	frequency=5.842e-01	ks_quality_p_value=0.129533	major_base=T	major_cov=63/48	major_frequency=5.842e-01	minor_base=C	minor_cov=34/45	new_cov=63/48	polymorphism_frequency=5.842e-01	polymorphism_score=171.0	prediction=polymorphism	ref_cov=34/45	total_cov=97/93
RA	690	.	Xen14_88	9286	0	C	T	bias_e_value=4963370	bias_p_value=0.999966	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.0	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.99177	major_base=C	major_cov=68/53	major_frequency=5.000e-01	minor_base=T	minor_cov=69/52	new_cov=69/52	polymorphism_frequency=5.000e-01	polymorphism_score=275.5	prediction=polymorphism	ref_cov=68/53	total_cov=137/105
RA	691	.	Xen14_88	9314	0	G	A	bias_e_value=4309780	bias_p_value=0.868287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.9	fisher_strand_p_value=0.802932	frequency=5.736e-01	ks_quality_p_value=0.66363	major_base=A	major_cov=83/69	major_frequency=5.736e-01	minor_base=G	minor_cov=64/49	new_cov=83/69	polymorphism_frequency=5.736e-01	polymorphism_score=243.7	prediction=polymorphism	ref_cov=64/49	total_cov=147/118
RA	692	.	Xen14_88	9462	0	T	G	bias_e_value=4687170	bias_p_value=0.94432	consensus_reject=FREQUENCY_CUTOFF	consensus_score=527.0	fisher_strand_p_value=0.685422	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=144/84	major_frequency=7.451e-01	minor_base=G	minor_cov=47/31	new_cov=47/31	polymorphism_frequency=2.549e-01	polymorphism_score=215.8	prediction=polymorphism	ref_cov=144/84	total_cov=191/115
RA	693	.	Xen14_88	9601	0	A	T	bias_e_value=586484	bias_p_value=0.118158	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.1	fisher_strand_p_value=0.139737	frequency=2.019e-01	ks_quality_p_value=0.180727	major_base=A	major_cov=42/41	major_frequency=7.981e-01	minor_base=T	minor_cov=15/6	new_cov=15/6	polymorphism_frequency=2.019e-01	polymorphism_score=49.7	prediction=polymorphism	ref_cov=42/41	total_cov=57/47
RA	694	.	Xen14_88	9644	0	A	T	bias_e_value=3602790	bias_p_value=0.725851	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.5	fisher_strand_p_value=0.638955	frequency=2.110e-01	ks_quality_p_value=0.56045	major_base=A	major_cov=46/40	major_frequency=7.890e-01	minor_base=T	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.110e-01	polymorphism_score=55.3	prediction=polymorphism	ref_cov=46/40	total_cov=60/49
RA	695	.	Xen14_88	9657	0	G	A	bias_e_value=4432520	bias_p_value=0.893017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.9	fisher_strand_p_value=1	frequency=2.315e-01	ks_quality_p_value=0.574675	major_base=G	major_cov=46/37	major_frequency=7.685e-01	minor_base=A	minor_cov=14/11	new_cov=14/11	polymorphism_frequency=2.315e-01	polymorphism_score=41.5	prediction=polymorphism	ref_cov=46/37	total_cov=61/48
RA	696	.	Xen14_88	9659	0	T	C	bias_e_value=4880540	bias_p_value=0.983278	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=0.822785	frequency=2.364e-01	ks_quality_p_value=1	major_base=T	major_cov=45/39	major_frequency=7.636e-01	minor_base=C	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=2.364e-01	polymorphism_score=42.0	prediction=polymorphism	ref_cov=45/39	total_cov=60/50
RA	697	.	Xen14_88	9744	0	A	G	bias_e_value=239063	bias_p_value=0.0481639	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.7	fisher_strand_p_value=0.0329179	frequency=4.564e-01	ks_quality_p_value=0.252742	major_base=A	major_cov=38/43	major_frequency=5.436e-01	minor_base=G	minor_cov=44/24	new_cov=44/24	polymorphism_frequency=4.564e-01	polymorphism_score=151.7	prediction=polymorphism	ref_cov=38/43	total_cov=82/67
RA	698	.	Xen14_88	9749	0	A	C	bias_e_value=595263	bias_p_value=0.119927	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.3	fisher_strand_p_value=0.0498547	frequency=4.631e-01	ks_quality_p_value=0.516225	major_base=A	major_cov=38/42	major_frequency=5.369e-01	minor_base=C	minor_cov=44/25	new_cov=44/25	polymorphism_frequency=4.631e-01	polymorphism_score=212.2	prediction=polymorphism	ref_cov=38/42	total_cov=82/67
RA	699	.	Xen14_88	9756	0	T	G	bias_e_value=3076030	bias_p_value=0.619725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.2	fisher_strand_p_value=0.267113	frequency=4.936e-01	ks_quality_p_value=1	major_base=T	major_cov=38/41	major_frequency=5.064e-01	minor_base=G	minor_cov=44/33	new_cov=44/33	polymorphism_frequency=4.936e-01	polymorphism_score=241.0	prediction=polymorphism	ref_cov=38/41	total_cov=82/74
RA	700	.	Xen14_88	9783	0	T	G	bias_e_value=2648320	bias_p_value=0.533556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.0	fisher_strand_p_value=0.207332	frequency=4.810e-01	ks_quality_p_value=1	major_base=T	major_cov=38/44	major_frequency=5.190e-01	minor_base=G	minor_cov=43/33	new_cov=43/33	polymorphism_frequency=4.810e-01	polymorphism_score=231.5	prediction=polymorphism	ref_cov=38/44	total_cov=81/77
RA	701	.	Xen14_88	9823	0	G	T	bias_e_value=3687240	bias_p_value=0.742866	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.5	fisher_strand_p_value=0.725591	frequency=4.060e-01	ks_quality_p_value=0.516897	major_base=G	major_cov=41/38	major_frequency=5.940e-01	minor_base=T	minor_cov=26/28	new_cov=26/28	polymorphism_frequency=4.060e-01	polymorphism_score=151.6	prediction=polymorphism	ref_cov=41/38	total_cov=67/66
RA	702	.	Xen14_88	9825	0	T	A	bias_e_value=3069640	bias_p_value=0.618437	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.8	fisher_strand_p_value=0.859588	frequency=4.122e-01	ks_quality_p_value=0.309612	major_base=T	major_cov=39/38	major_frequency=5.878e-01	minor_base=A	minor_cov=26/28	new_cov=26/28	polymorphism_frequency=4.122e-01	polymorphism_score=155.5	prediction=polymorphism	ref_cov=39/38	total_cov=67/66
RA	703	.	Xen14_88	9843	0	G	T	bias_e_value=1652630	bias_p_value=0.332954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.8	fisher_strand_p_value=0.577193	frequency=4.000e-01	ks_quality_p_value=0.175285	major_base=G	major_cov=39/33	major_frequency=6.000e-01	minor_base=T	minor_cov=23/25	new_cov=23/25	polymorphism_frequency=4.000e-01	polymorphism_score=135.1	prediction=polymorphism	ref_cov=39/33	total_cov=62/58
RA	704	.	Xen14_88	10044	0	A	G	bias_e_value=612450	bias_p_value=0.12339	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.1	fisher_strand_p_value=0.133435	frequency=2.000e-01	ks_quality_p_value=0.2	major_base=A	major_cov=31/25	major_frequency=8.000e-01	minor_base=G	minor_cov=4/10	new_cov=4/10	polymorphism_frequency=2.000e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=31/25	total_cov=35/35
RA	705	.	Xen14_88	10062	0	G	C	bias_e_value=864893	bias_p_value=0.174249	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.4	fisher_strand_p_value=0.236813	frequency=2.000e-01	ks_quality_p_value=0.176165	major_base=G	major_cov=27/29	major_frequency=8.000e-01	minor_base=C	minor_cov=4/10	new_cov=4/10	polymorphism_frequency=2.000e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=27/29	total_cov=31/39
RA	706	.	Xen14_9	6871	0	A	C	bias_e_value=3.724e-07	bias_p_value=7.50272e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.7	fisher_strand_p_value=2.15783e-15	frequency=2.481e-01	ks_quality_p_value=1	major_base=A	major_cov=26/74	major_frequency=7.519e-01	minor_base=C	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.481e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=26/74	total_cov=61/74
RA	707	.	Xen14_9	55920	0	A	C	bias_e_value=0.00257698	bias_p_value=5.19183e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.4	fisher_strand_p_value=2.0263e-11	frequency=2.033e-01	ks_quality_p_value=1	major_base=A	major_cov=29/69	major_frequency=7.967e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.033e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=29/69	total_cov=54/69
RA	708	.	Xen14_96	1240	0	G	A	bias_e_value=1864750	bias_p_value=0.375689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.1	fisher_strand_p_value=0.290871	frequency=3.387e-01	ks_quality_p_value=0.414595	major_base=G	major_cov=19/22	major_frequency=6.613e-01	minor_base=A	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=3.387e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=19/22	total_cov=32/30
RA	709	.	Xen14_96	1240	1	.	A	bias_e_value=1872590	bias_p_value=0.37727	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.8	fisher_strand_p_value=0.290871	frequency=3.387e-01	ks_quality_p_value=0.417168	major_base=.	major_cov=19/22	major_frequency=6.613e-01	minor_base=A	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=3.387e-01	polymorphism_score=99.2	prediction=polymorphism	ref_cov=19/22	total_cov=32/30
RA	710	.	Xen14_96	1241	0	C	T	bias_e_value=2161920	bias_p_value=0.43556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.3	fisher_strand_p_value=0.290871	frequency=3.387e-01	ks_quality_p_value=0.517491	major_base=C	major_cov=19/22	major_frequency=6.613e-01	minor_base=T	minor_cov=13/8	new_cov=13/8	polymorphism_frequency=3.387e-01	polymorphism_score=39.4	prediction=polymorphism	ref_cov=19/22	total_cov=32/30
RA	711	.	Xen14_96	1253	0	G	A	bias_e_value=4339040	bias_p_value=0.874183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.2	fisher_strand_p_value=0.54235	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=19/23	major_frequency=7.500e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.500e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=19/23	total_cov=27/29
RA	712	.	Xen14_96	1254	0	G	A	bias_e_value=4339040	bias_p_value=0.874183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=0.54235	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=19/23	major_frequency=7.500e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.500e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=19/23	total_cov=27/29
RA	713	.	Xen14_96	3247	0	C	T	bias_e_value=1732100	bias_p_value=0.348965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=1	frequency=2.589e-01	ks_quality_p_value=0.108269	major_base=C	major_cov=44/39	major_frequency=7.411e-01	minor_base=T	minor_cov=16/13	new_cov=16/13	polymorphism_frequency=2.589e-01	polymorphism_score=52.6	prediction=polymorphism	ref_cov=44/39	total_cov=60/52
RA	714	.	Xen14_96	3372	0	C	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=1	frequency=3.916e-01	ks_quality_p_value=1	major_base=C	major_cov=50/37	major_frequency=6.084e-01	minor_base=A	minor_cov=33/23	new_cov=33/23	polymorphism_frequency=3.916e-01	polymorphism_score=153.0	prediction=polymorphism	ref_cov=50/37	total_cov=83/60
RA	715	.	Xen14_96	3435	0	A	G	bias_e_value=1030300	bias_p_value=0.207574	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.6	fisher_strand_p_value=0.100042	frequency=4.129e-01	ks_quality_p_value=0.525999	major_base=A	major_cov=58/33	major_frequency=5.871e-01	minor_base=G	minor_cov=32/32	new_cov=32/32	polymorphism_frequency=4.129e-01	polymorphism_score=137.4	prediction=polymorphism	ref_cov=58/33	total_cov=90/65
RA	716	.	Xen14_96	3513	0	G	A	bias_e_value=829402	bias_p_value=0.167099	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.8	fisher_strand_p_value=0.0394865	frequency=4.317e-01	ks_quality_p_value=1	major_base=G	major_cov=51/28	major_frequency=5.683e-01	minor_base=A	minor_cov=28/32	new_cov=28/32	polymorphism_frequency=4.317e-01	polymorphism_score=130.3	prediction=polymorphism	ref_cov=51/28	total_cov=79/60
RA	717	.	Xen14_96	3721	0	T	C	bias_e_value=3445870	bias_p_value=0.694238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.1	fisher_strand_p_value=0.635066	frequency=4.405e-01	ks_quality_p_value=0.517334	major_base=T	major_cov=40/54	major_frequency=5.595e-01	minor_base=C	minor_cov=28/46	new_cov=28/46	polymorphism_frequency=4.405e-01	polymorphism_score=161.3	prediction=polymorphism	ref_cov=40/54	total_cov=68/100
RA	718	.	Xen14_96	3739	0	A	G	bias_e_value=3165290	bias_p_value=0.637708	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.5	fisher_strand_p_value=0.529023	frequency=4.566e-01	ks_quality_p_value=0.531178	major_base=A	major_cov=37/57	major_frequency=5.434e-01	minor_base=G	minor_cov=27/52	new_cov=27/52	polymorphism_frequency=4.566e-01	polymorphism_score=176.1	prediction=polymorphism	ref_cov=37/57	total_cov=64/109
RA	719	.	Xen14_96	3815	0	A	G	bias_e_value=2346390	bias_p_value=0.472725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.4	fisher_strand_p_value=0.872765	frequency=4.035e-01	ks_quality_p_value=0.195749	major_base=A	major_cov=37/65	major_frequency=5.965e-01	minor_base=G	minor_cov=26/43	new_cov=26/43	polymorphism_frequency=4.035e-01	polymorphism_score=148.5	prediction=polymorphism	ref_cov=37/65	total_cov=63/109
RA	720	.	Xen14_96	3853	0	A	G	bias_e_value=1326280	bias_p_value=0.267205	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.5	fisher_strand_p_value=0.326297	frequency=4.416e-01	ks_quality_p_value=0.227415	major_base=A	major_cov=34/52	major_frequency=5.584e-01	minor_base=G	minor_cov=33/35	new_cov=33/35	polymorphism_frequency=4.416e-01	polymorphism_score=150.0	prediction=polymorphism	ref_cov=34/52	total_cov=67/87
RA	721	.	Xen14_96	3856	0	C	A	bias_e_value=745487	bias_p_value=0.150193	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.1	fisher_strand_p_value=0.417356	frequency=4.387e-01	ks_quality_p_value=0.0823349	major_base=C	major_cov=36/51	major_frequency=5.613e-01	minor_base=A	minor_cov=33/35	new_cov=33/35	polymorphism_frequency=4.387e-01	polymorphism_score=198.5	prediction=polymorphism	ref_cov=36/51	total_cov=69/86
RA	722	.	Xen14_96	3859	0	G	C	bias_e_value=2226390	bias_p_value=0.44855	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.9	fisher_strand_p_value=0.508729	frequency=4.564e-01	ks_quality_p_value=0.309528	major_base=G	major_cov=34/47	major_frequency=5.436e-01	minor_base=C	minor_cov=33/35	new_cov=33/35	polymorphism_frequency=4.564e-01	polymorphism_score=223.5	prediction=polymorphism	ref_cov=34/47	total_cov=67/82
RA	723	.	Xen14_96	3913	0	G	A	bias_e_value=363796	bias_p_value=0.0732937	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.3	fisher_strand_p_value=0.083395	frequency=2.613e-01	ks_quality_p_value=0.166562	major_base=G	major_cov=32/50	major_frequency=7.387e-01	minor_base=A	minor_cov=17/12	new_cov=17/12	polymorphism_frequency=2.613e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=32/50	total_cov=49/62
RA	724	.	Xen14_96	3922	0	G	A	bias_e_value=186026	bias_p_value=0.0374785	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.2	fisher_strand_p_value=0.106404	frequency=2.430e-01	ks_quality_p_value=0.0578298	major_base=G	major_cov=28/53	major_frequency=7.570e-01	minor_base=A	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=2.430e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=28/53	total_cov=42/65
RA	725	.	Xen14_96	4081	0	T	C	bias_e_value=2061300	bias_p_value=0.415289	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.9	fisher_strand_p_value=0.203042	frequency=6.131e-01	ks_quality_p_value=0.689597	major_base=C	major_cov=63/40	major_frequency=6.131e-01	minor_base=T	minor_cov=33/32	new_cov=63/40	polymorphism_frequency=6.131e-01	polymorphism_score=133.8	prediction=polymorphism	ref_cov=33/32	total_cov=97/72
RA	726	.	Xen14_96	4157	0	G	A	bias_e_value=502575	bias_p_value=0.101253	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.0	fisher_strand_p_value=0.657251	frequency=4.233e-01	ks_quality_p_value=0.0316073	major_base=G	major_cov=58/51	major_frequency=5.767e-01	minor_base=A	minor_cov=46/34	new_cov=46/34	polymorphism_frequency=4.233e-01	polymorphism_score=174.6	prediction=polymorphism	ref_cov=58/51	total_cov=104/85
RA	727	.	Xen14_96	4180	0	G	T	bias_e_value=2356210	bias_p_value=0.474703	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.4	fisher_strand_p_value=0.289934	frequency=4.098e-01	ks_quality_p_value=0.593117	major_base=G	major_cov=57/51	major_frequency=5.902e-01	minor_base=T	minor_cov=46/29	new_cov=46/29	polymorphism_frequency=4.098e-01	polymorphism_score=214.5	prediction=polymorphism	ref_cov=57/51	total_cov=103/80
RA	728	.	Xen14_96	4185	0	G	A	bias_e_value=505997	bias_p_value=0.101943	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.1	fisher_strand_p_value=0.45347	frequency=4.000e-01	ks_quality_p_value=0.046204	major_base=G	major_cov=63/51	major_frequency=6.000e-01	minor_base=A	minor_cov=47/29	new_cov=47/29	polymorphism_frequency=4.000e-01	polymorphism_score=163.1	prediction=polymorphism	ref_cov=63/51	total_cov=110/80
RA	729	.	Xen14_96	4370	0	G	A	bias_e_value=1510420	bias_p_value=0.304304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.3	fisher_strand_p_value=0.0890008	frequency=5.446e-01	ks_quality_p_value=1	major_base=A	major_cov=57/53	major_frequency=5.446e-01	minor_base=G	minor_cov=36/56	new_cov=57/53	polymorphism_frequency=5.446e-01	polymorphism_score=204.9	prediction=polymorphism	ref_cov=36/56	total_cov=93/109
RA	730	.	Xen14_96	4649	0	G	A	bias_e_value=37331.9	bias_p_value=0.00752122	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=0.000944272	frequency=5.663e-01	ks_quality_p_value=1	major_base=A	major_cov=58/36	major_frequency=5.663e-01	minor_base=G	minor_cov=25/47	new_cov=58/36	polymorphism_frequency=5.663e-01	polymorphism_score=157.5	prediction=polymorphism	ref_cov=25/47	total_cov=84/83
RA	731	.	Xen14_96	4936	0	A	G	bias_e_value=2956870	bias_p_value=0.595718	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.9	fisher_strand_p_value=0.476576	frequency=5.312e-01	ks_quality_p_value=0.523281	major_base=G	major_cov=41/27	major_frequency=5.312e-01	minor_base=A	minor_cov=32/28	new_cov=41/27	polymorphism_frequency=5.312e-01	polymorphism_score=132.9	prediction=polymorphism	ref_cov=32/28	total_cov=73/55
RA	732	.	Xen14_96	5239	0	G	A	bias_e_value=2354230	bias_p_value=0.474304	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.2	fisher_strand_p_value=0.512237	frequency=2.551e-01	ks_quality_p_value=0.335271	major_base=G	major_cov=79/67	major_frequency=7.449e-01	minor_base=A	minor_cov=30/20	new_cov=30/20	polymorphism_frequency=2.551e-01	polymorphism_score=93.8	prediction=polymorphism	ref_cov=79/67	total_cov=110/87
RA	733	.	Xen14_96	5260	0	G	A	bias_e_value=3493180	bias_p_value=0.703768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.2	fisher_strand_p_value=0.337204	frequency=3.264e-01	ks_quality_p_value=1	major_base=G	major_cov=81/82	major_frequency=6.736e-01	minor_base=A	minor_cov=45/34	new_cov=45/34	polymorphism_frequency=3.264e-01	polymorphism_score=153.2	prediction=polymorphism	ref_cov=81/82	total_cov=126/116
RA	734	.	Xen14_96	5290	0	A	G	bias_e_value=1864970	bias_p_value=0.375733	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.6	fisher_strand_p_value=0.127384	frequency=3.297e-01	ks_quality_p_value=0.946861	major_base=A	major_cov=104/83	major_frequency=6.703e-01	minor_base=G	minor_cov=42/50	new_cov=42/50	polymorphism_frequency=3.297e-01	polymorphism_score=188.3	prediction=polymorphism	ref_cov=104/83	total_cov=146/133
RA	735	.	Xen14_96	5293	0	G	A	bias_e_value=3335730	bias_p_value=0.672048	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.6	fisher_strand_p_value=0.309758	frequency=3.251e-01	ks_quality_p_value=0.997975	major_base=G	major_cov=103/88	major_frequency=6.749e-01	minor_base=A	minor_cov=43/49	new_cov=43/49	polymorphism_frequency=3.251e-01	polymorphism_score=186.9	prediction=polymorphism	ref_cov=103/88	total_cov=146/137
RA	736	.	Xen14_96	5633	0	A	G	bias_e_value=2197430	bias_p_value=0.442715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.6	fisher_strand_p_value=0.311466	frequency=3.922e-01	ks_quality_p_value=0.495486	major_base=A	major_cov=39/23	major_frequency=6.078e-01	minor_base=G	minor_cov=21/19	new_cov=21/19	polymorphism_frequency=3.922e-01	polymorphism_score=82.8	prediction=polymorphism	ref_cov=39/23	total_cov=61/42
RA	737	.	Xen14_96	5874	0	A	T	bias_e_value=4390180	bias_p_value=0.884485	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.6	fisher_strand_p_value=0.559633	frequency=3.604e-01	ks_quality_p_value=1	major_base=A	major_cov=33/38	major_frequency=6.396e-01	minor_base=T	minor_cov=21/19	new_cov=21/19	polymorphism_frequency=3.604e-01	polymorphism_score=110.5	prediction=polymorphism	ref_cov=33/38	total_cov=54/58
RA	738	.	Xen14_96	5876	0	G	A	bias_e_value=3606070	bias_p_value=0.726512	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.9	fisher_strand_p_value=0.556566	frequency=3.571e-01	ks_quality_p_value=0.644572	major_base=G	major_cov=33/39	major_frequency=6.429e-01	minor_base=A	minor_cov=21/19	new_cov=21/19	polymorphism_frequency=3.571e-01	polymorphism_score=79.6	prediction=polymorphism	ref_cov=33/39	total_cov=54/58
RA	739	.	Xen14_96	5881	0	A	C	bias_e_value=3990340	bias_p_value=0.80393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.3	fisher_strand_p_value=0.443302	frequency=3.839e-01	ks_quality_p_value=1	major_base=A	major_cov=30/39	major_frequency=6.161e-01	minor_base=C	minor_cov=22/21	new_cov=22/21	polymorphism_frequency=3.839e-01	polymorphism_score=127.6	prediction=polymorphism	ref_cov=30/39	total_cov=52/60
RA	740	.	Xen14_96	5896	0	T	A	bias_e_value=4963540	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=1	frequency=3.952e-01	ks_quality_p_value=1	major_base=T	major_cov=34/41	major_frequency=6.048e-01	minor_base=A	minor_cov=22/27	new_cov=22/27	polymorphism_frequency=3.952e-01	polymorphism_score=140.0	prediction=polymorphism	ref_cov=34/41	total_cov=56/68
RA	741	.	Xen14_96	6530	0	C	T	bias_e_value=1759270	bias_p_value=0.354439	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.5	fisher_strand_p_value=0.260722	frequency=2.404e-01	ks_quality_p_value=0.424757	major_base=C	major_cov=40/39	major_frequency=7.596e-01	minor_base=T	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=2.404e-01	polymorphism_score=43.8	prediction=polymorphism	ref_cov=40/39	total_cov=56/48
RA	742	.	Xen14_98	6171	0	C	T	bias_e_value=4919000	bias_p_value=0.991027	consensus_reject=FREQUENCY_CUTOFF	consensus_score=362.1	fisher_strand_p_value=0.878367	frequency=2.383e-01	ks_quality_p_value=0.989406	major_base=C	major_cov=92/87	major_frequency=7.617e-01	minor_base=T	minor_cov=30/26	new_cov=30/26	polymorphism_frequency=2.383e-01	polymorphism_score=103.6	prediction=polymorphism	ref_cov=92/87	total_cov=122/113
RA	743	.	Xen14_98	6276	0	C	T	bias_e_value=701820	bias_p_value=0.141395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.4	fisher_strand_p_value=0.0318531	frequency=4.829e-01	ks_quality_p_value=0.997783	major_base=C	major_cov=93/88	major_frequency=5.171e-01	minor_base=T	minor_cov=67/102	new_cov=67/102	polymorphism_frequency=4.829e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=93/88	total_cov=160/191
RA	744	.	Xen14_98	6285	0	C	T	bias_e_value=618724	bias_p_value=0.124654	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.5	fisher_strand_p_value=0.0270366	frequency=4.876e-01	ks_quality_p_value=1	major_base=C	major_cov=98/88	major_frequency=5.124e-01	minor_base=T	minor_cov=72/105	new_cov=72/105	polymorphism_frequency=4.876e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=98/88	total_cov=171/193
RA	745	.	Xen14_98	6322	0	T	C	bias_e_value=2313990	bias_p_value=0.466198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.167172	frequency=4.915e-01	ks_quality_p_value=1	major_base=T	major_cov=90/90	major_frequency=5.085e-01	minor_base=C	minor_cov=74/100	new_cov=74/100	polymorphism_frequency=4.915e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=90/90	total_cov=164/190
RA	746	.	Xen14_98	6333	0	A	G	bias_e_value=4130640	bias_p_value=0.832196	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.5	fisher_strand_p_value=0.527821	frequency=4.669e-01	ks_quality_p_value=0.909119	major_base=A	major_cov=91/102	major_frequency=5.331e-01	minor_base=G	minor_cov=74/95	new_cov=74/95	polymorphism_frequency=4.669e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/102	total_cov=165/197
RA	747	.	Xen14_98	6351	0	G	A	bias_e_value=4880600	bias_p_value=0.983291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.9	fisher_strand_p_value=0.822851	frequency=4.875e-01	ks_quality_p_value=1	major_base=G	major_cov=76/88	major_frequency=5.125e-01	minor_base=A	minor_cov=70/86	new_cov=70/86	polymorphism_frequency=4.875e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/88	total_cov=146/174
RA	748	.	Xen14_98	6374	0	G	A	bias_e_value=3736160	bias_p_value=0.752722	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.3	fisher_strand_p_value=0.385246	frequency=4.721e-01	ks_quality_p_value=1	major_base=G	major_cov=91/89	major_frequency=5.279e-01	minor_base=A	minor_cov=73/88	new_cov=73/88	polymorphism_frequency=4.721e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/89	total_cov=164/177
RA	749	.	Xen14_98	6471	0	C	T	bias_e_value=4944990	bias_p_value=0.996264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.1	fisher_strand_p_value=0.914814	frequency=5.170e-01	ks_quality_p_value=1	major_base=T	major_cov=101/81	major_frequency=5.170e-01	minor_base=C	minor_cov=93/77	new_cov=101/81	polymorphism_frequency=5.170e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=93/77	total_cov=195/159
RA	750	.	Xen14_98	6517	0	A	G	bias_e_value=4175850	bias_p_value=0.841305	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.3	fisher_strand_p_value=0.508001	frequency=4.979e-01	ks_quality_p_value=0.969448	major_base=A	major_cov=72/49	major_frequency=5.021e-01	minor_base=G	minor_cov=77/43	new_cov=77/43	polymorphism_frequency=4.979e-01	polymorphism_score=274.4	prediction=polymorphism	ref_cov=72/49	total_cov=149/92
MC	751	.	Xen14_126	1	174	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=94	right_outside_cov=98
MC	752	.	Xen14_197	403	433	0	0	left_inside_cov=19	left_outside_cov=109	right_inside_cov=0	right_outside_cov=NA
MC	753	.	Xen14_22	74420	74457	0	0	left_inside_cov=31	left_outside_cov=335	right_inside_cov=0	right_outside_cov=NA
MC	754	.	Xen14_25	73200	73240	0	0	left_inside_cov=28	left_outside_cov=29	right_inside_cov=0	right_outside_cov=NA
MC	755	.	Xen14_31	1	26	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=30	right_outside_cov=490
MC	756	.	Xen14_31	58715	58819	0	0	left_inside_cov=106	left_outside_cov=109	right_inside_cov=0	right_outside_cov=NA
MC	757	.	Xen14_33	53190	53241	0	0	left_inside_cov=34	left_outside_cov=103	right_inside_cov=0	right_outside_cov=NA
MC	758	.	Xen14_58	24541	24572	0	0	left_inside_cov=34	left_outside_cov=110	right_inside_cov=0	right_outside_cov=NA
MC	759	.	Xen14_60	1	31	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=19	right_outside_cov=64
MC	760	.	Xen14_62	1	43	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=11	right_outside_cov=38
MC	761	.	Xen14_67	1	27	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=15	right_outside_cov=62
MC	762	.	Xen14_76	1	32	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=27	right_outside_cov=202
MC	763	.	Xen14_79	12253	12553	0	0	left_inside_cov=88	left_outside_cov=90	right_inside_cov=0	right_outside_cov=NA
MC	764	.	Xen14_85	11156	11197	0	0	left_inside_cov=41	left_outside_cov=110	right_inside_cov=0	right_outside_cov=NA
JC	765	.	Xen14_1	1	1	Xen14_148	943	1	-25	alignment_overlap=-25	coverage_minus=8	coverage_plus=17	flanking_left=150	flanking_right=47	frequency=1	junction_possible_overlap_registers=123	key=Xen14_1__1__1__Xen14_148__943__1__-25__CAAAATGAATCAATCTTTACTTTCT__150__47__0__1	max_left=121	max_left_minus=121	max_left_plus=121	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=45	max_min_right_minus=42	max_min_right_plus=45	max_pos_hash_score=246	max_right=45	max_right_minus=42	max_right_plus=45	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.42	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25	unique_read_sequence=CAAAATGAATCAATCTTTACTTTCT
JC	766	.	Xen14_1	1	1	Xen14_24	73310	1	-43	alignment_overlap=-43	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.828e-01	junction_possible_overlap_registers=105	key=Xen14_1__1__1__Xen14_24__73310__1__-43__CAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGG__150__150__0__0	max_left=14	max_left_minus=14	max_left_plus=7	max_min_left=14	max_min_left_minus=14	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=210	max_right=100	max_right_minus=92	max_right_plus=100	neg_log10_pos_hash_p_value=7.4	new_junction_coverage=0.09	new_junction_read_count=5	polymorphism_frequency=1.828e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGG
JC	767	.	Xen14_1	121778	1	Xen14_168	1	1	-48	alignment_overlap=-48	coverage_minus=27	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=7.262e-01	junction_possible_overlap_registers=100	key=Xen14_1__121778__1__Xen14_168__1__1__-48__TAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGG__150__150__0__0	max_left=74	max_left_minus=71	max_left_plus=74	max_min_left=48	max_min_left_minus=48	max_min_left_plus=42	max_min_right=51	max_min_right_minus=44	max_min_right_plus=51	max_pos_hash_score=200	max_right=98	max_right_minus=98	max_right_plus=98	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.07	new_junction_read_count=43	polymorphism_frequency=7.262e-01	pos_hash_score=33	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42	unique_read_sequence=TAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGG
JC	768	.	Xen14_1	241843	-1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=84	frequency=1.611e-01	junction_possible_overlap_registers=148	key=Xen14_1__241843__-1__Xen14_47__36191__1__0____150__84__0__0	max_left=71	max_left_minus=68	max_left_plus=71	max_min_left=71	max_min_left_minus=68	max_min_left_plus=71	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=82	max_right_plus=84	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.15	new_junction_read_count=17	polymorphism_frequency=1.611e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=9
JC	769	.	Xen14_1	242479	-1	Xen14_186	394	1	0	alignment_overlap=5	coverage_minus=155	coverage_plus=152	flanking_left=150	flanking_right=72	frequency=2.168e-01	junction_possible_overlap_registers=143	key=Xen14_1__242479__-1__Xen14_186__389__1__5____150__72__0__1	max_left=144	max_left_minus=144	max_left_plus=143	max_min_left=71	max_min_left_minus=71	max_min_left_plus=47	max_min_right=72	max_min_right_minus=71	max_min_right_plus=72	max_pos_hash_score=286	max_right=72	max_right_minus=72	max_right_plus=72	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=4.23	new_junction_read_count=344	polymorphism_frequency=2.168e-01	pos_hash_score=102	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=17.05	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=1286	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=307
JC	770	.	Xen14_1	242480	1	Xen14_105	4697	1	0	alignment_overlap=0	coverage_minus=111	coverage_plus=214	flanking_left=77	flanking_right=150	frequency=7.490e-01	junction_possible_overlap_registers=148	key=Xen14_1__242480__1__Xen14_105__4697__1__0____77__150__1__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=75	max_min_right_minus=75	max_min_right_plus=73	max_pos_hash_score=296	max_right=148	max_right_minus=147	max_right_plus=148	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.01	new_junction_read_count=370	polymorphism_frequency=7.490e-01	pos_hash_score=115	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=325
JC	771	.	Xen14_10	471	-1	Xen14_23	73961	-1	0	alignment_overlap=14	coverage_minus=187	coverage_plus=193	flanking_left=150	flanking_right=150	frequency=6.064e-01	junction_possible_overlap_registers=134	key=Xen14_10__471__-1__Xen14_23__73975__-1__14____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=134	max_min_left=67	max_min_left_minus=66	max_min_left_plus=67	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=268	max_right=133	max_right_minus=129	max_right_plus=133	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.78	new_junction_read_count=394	polymorphism_frequency=6.064e-01	pos_hash_score=157	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=3.01	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=565	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=380
JC	772	.	Xen14_10	66941	1	Xen14_10	66934	-1	0	alignment_overlap=45	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=5.678e-02	junction_possible_overlap_registers=103	key=Xen14_10__66941__1__Xen14_10__66979__-1__45____150__150__0__0	max_left=69	max_left_minus=41	max_left_plus=69	max_min_left=41	max_min_left_minus=41	max_min_left_plus=0	max_min_right=36	max_min_right_minus=0	max_min_right_plus=36	max_pos_hash_score=206	max_right=95	max_right_minus=95	max_right_plus=36	neg_log10_pos_hash_p_value=16.8	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=5.678e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=45	side_1_possible_overlap_registers=148	side_1_read_count=137	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=103	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=6
JC	773	.	Xen14_10	107217	-1	Xen14_123	2714	-1	-16	alignment_overlap=-16	coverage_minus=200	coverage_plus=143	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=132	key=Xen14_10__107217__-1__Xen14_123__2714__-1__-16__TGAGTTCGGCATGGGA__150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=131	max_min_left=66	max_min_left_minus=66	max_min_left_plus=65	max_min_right=67	max_min_right_minus=67	max_min_right_plus=66	max_pos_hash_score=264	max_right=133	max_right_minus=133	max_right_plus=131	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.58	new_junction_read_count=348	polymorphism_frequency=1.000e+00	pos_hash_score=156	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=343	unique_read_sequence=TGAGTTCGGCATGGGA
JC	774	.	Xen14_101	2657	1	Xen14_101	2684	1	0	alignment_overlap=11	coverage_minus=7	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.266e-02	junction_possible_overlap_registers=137	key=Xen14_101__2657__1__Xen14_101__2673__1__11____150__150__0__0	max_left=45	max_left_minus=45	max_left_plus=25	max_min_left=45	max_min_left_minus=45	max_min_left_plus=25	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=124	max_right_minus=124	max_right_plus=117	neg_log10_pos_hash_p_value=17.7	new_junction_coverage=0.01	new_junction_read_count=9	polymorphism_frequency=1.266e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=748	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=711	side_2_redundant=0	total_non_overlap_reads=9
JC	775	.	Xen14_101	2724	-1	Xen14_101	2730	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=9.096e-03	junction_possible_overlap_registers=138	key=Xen14_101__2724__-1__Xen14_101__2740__-1__10____150__150__0__0	max_left=126	max_left_minus=125	max_left_plus=126	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=15	max_min_right_plus=52	max_pos_hash_score=276	max_right=52	max_right_minus=15	max_right_plus=52	neg_log10_pos_hash_p_value=18.6	new_junction_coverage=0.01	new_junction_read_count=7	polymorphism_frequency=9.096e-03	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=826	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=755	side_2_redundant=0	total_non_overlap_reads=7
JC	776	.	Xen14_101	3608	1	Xen14_101	3654	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.795e-03	junction_possible_overlap_registers=140	key=Xen14_101__3608__1__Xen14_101__3646__1__8____150__150__0__0	max_left=46	max_left_minus=46	max_left_plus=39	max_min_left=46	max_min_left_minus=46	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=125	max_right_minus=106	max_right_plus=125	neg_log10_pos_hash_p_value=19.3	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=6.795e-03	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=745	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=757	side_2_redundant=0	total_non_overlap_reads=5
JC	777	.	Xen14_102	5552	-1	Xen14_141	1	1	-8	alignment_overlap=-8	coverage_minus=12	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_102__5552__-1__Xen14_141__1__1__-8__AGGAGAGC__150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=59	max_pos_hash_score=280	max_right=61	max_right_minus=61	max_right_plus=59	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.05	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28	unique_read_sequence=AGGAGAGC
JC	778	.	Xen14_105	3419	1	Xen14_37	180	1	-3	alignment_overlap=-3	coverage_minus=11	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=2.779e-01	junction_possible_overlap_registers=145	key=Xen14_105__3419__1__Xen14_37__180__1__-3__GCT__150__150__0__0	max_left=141	max_left_minus=136	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=54	max_min_right_minus=54	max_min_right_plus=52	max_pos_hash_score=290	max_right=54	max_right_minus=54	max_right_plus=52	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.28	new_junction_read_count=36	polymorphism_frequency=2.779e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=GCT
JC	779	.	Xen14_105	3420	1	Xen14_49	56	1	0	alignment_overlap=55	coverage_minus=44	coverage_plus=64	flanking_left=150	flanking_right=150	frequency=7.313e-01	junction_possible_overlap_registers=93	key=Xen14_105__3420__1__Xen14_49__1__1__55____150__150__0__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=45	max_min_left_minus=43	max_min_left_plus=45	max_min_right=47	max_min_right_minus=47	max_min_right_plus=43	max_pos_hash_score=186	max_right=94	max_right_minus=89	max_right_plus=94	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=124	polymorphism_frequency=7.313e-01	pos_hash_score=57	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=55	side_1_possible_overlap_registers=148	side_1_read_count=145	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=93	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	780	.	Xen14_105	3625	-1	Xen14_115	3560	1	-70	alignment_overlap=-70	coverage_minus=55	coverage_plus=31	flanking_left=150	flanking_right=74	frequency=2.948e-01	junction_possible_overlap_registers=78	key=Xen14_105__3625__-1__Xen14_115__3560__1__-70__GTTCTCCATTACCGCATTATCAAGGCAGTTGCCCTTGCGCGACATGCTCTGCACTAACCCTCTGTCCGCC__150__74__0__0	max_left=79	max_left_minus=79	max_left_plus=79	max_min_left=38	max_min_left_minus=38	max_min_left_plus=37	max_min_right=39	max_min_right_minus=39	max_min_right_plus=38	max_pos_hash_score=156	max_right=74	max_right_minus=74	max_right_plus=67	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.04	new_junction_read_count=88	polymorphism_frequency=2.948e-01	pos_hash_score=54	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=4.26	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=726	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=86	unique_read_sequence=GTTCTCCATTACCGCATTATCAAGGCAGTTGCCCTTGCGCGACATGCTCTGCACTAACCCTCTGTCCGCC
JC	781	.	Xen14_105	3688	1	Xen14_12	188	-1	-1	alignment_overlap=-1	coverage_minus=30	coverage_plus=49	flanking_left=150	flanking_right=150	frequency=3.131e-01	junction_possible_overlap_registers=147	key=Xen14_105__3688__1__Xen14_12__188__-1__-1__G__150__150__0__0	max_left=49	max_left_minus=49	max_left_plus=49	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=147	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=1.01	new_junction_read_count=127	polymorphism_frequency=3.131e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.66	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=454	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=79	unique_read_sequence=G
JC	782	.	Xen14_105	3695	-1	Xen14_16	81842	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=100	frequency=5.693e-02	junction_possible_overlap_registers=148	key=Xen14_105__3695__-1__Xen14_16__81842__1__0____150__100__0__0	max_left=56	max_left_minus=53	max_left_plus=56	max_min_left=56	max_min_left_minus=53	max_min_left_plus=56	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=100	max_right_minus=100	max_right_plus=94	neg_log10_pos_hash_p_value=13.6	new_junction_coverage=0.11	new_junction_read_count=15	polymorphism_frequency=5.693e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.39	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=408	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=6
JC	783	.	Xen14_105	4985	1	Xen14_191	128	1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=37	flanking_left=77	flanking_right=150	frequency=4.774e-01	junction_possible_overlap_registers=148	key=Xen14_105__4985__1__Xen14_191__128__1__0____77__150__1__0	max_left=77	max_left_minus=74	max_left_plus=77	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=70	max_min_right_minus=39	max_min_right_plus=70	max_pos_hash_score=296	max_right=147	max_right_minus=147	max_right_plus=131	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.32	new_junction_read_count=95	polymorphism_frequency=4.774e-01	pos_hash_score=40	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=68
JC	784	.	Xen14_105	4988	-1	Xen14_152	859	1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=29	flanking_left=150	flanking_right=76	frequency=1.869e-01	junction_possible_overlap_registers=148	key=Xen14_105__4988__-1__Xen14_152__859__1__0____150__76__0__1	max_left=149	max_left_minus=147	max_left_plus=149	max_min_left=69	max_min_left_minus=69	max_min_left_plus=53	max_min_right=74	max_min_right_minus=74	max_min_right_plus=74	max_pos_hash_score=296	max_right=76	max_right_minus=76	max_right_plus=74	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.55	new_junction_read_count=80	polymorphism_frequency=1.869e-01	pos_hash_score=42	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.04	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=348	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=67
JC	785	.	Xen14_106	87	-1	Xen14_159	728	-1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=0	flanking_left=86	flanking_right=150	frequency=2.006e-01	junction_possible_overlap_registers=147	key=Xen14_106__87__-1__Xen14_159__729__-1__1____86__150__0__0	max_left=69	max_left_minus=69	max_left_plus=0	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=100	max_right_minus=100	max_right_plus=0	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.11	new_junction_read_count=14	polymorphism_frequency=2.006e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=14
JC	786	.	Xen14_106	1597	1	Xen14_191	130	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1.923e-01	junction_possible_overlap_registers=146	key=Xen14_106__1597__1__Xen14_191__128__1__2____150__150__0__0	max_left=33	max_left_minus=21	max_left_plus=33	max_min_left=33	max_min_left_minus=21	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=145	max_right_minus=145	max_right_plus=136	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.11	new_junction_read_count=28	polymorphism_frequency=1.923e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.25	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=13
JC	787	.	Xen14_106	1601	-1	Xen14_167	666	-1	0	alignment_overlap=0	coverage_minus=39	coverage_plus=38	flanking_left=150	flanking_right=150	frequency=5.820e-01	junction_possible_overlap_registers=148	key=Xen14_106__1601__-1__Xen14_167__666__-1__0____150__150__0__0	max_left=60	max_left_minus=58	max_left_plus=60	max_min_left=60	max_min_left_minus=58	max_min_left_plus=60	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=148	max_right_plus=149	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.19	new_junction_read_count=94	polymorphism_frequency=5.820e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77
JC	788	.	Xen14_106	4570	1	Xen14_47	36192	1	0	alignment_overlap=2	coverage_minus=10	coverage_plus=3	flanking_left=150	flanking_right=83	frequency=1.892e-01	junction_possible_overlap_registers=146	key=Xen14_106__4570__1__Xen14_47__36190__1__2____150__83__0__0	max_left=70	max_left_minus=70	max_left_plus=69	max_min_left=70	max_min_left_minus=70	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=83	max_right_minus=83	max_right_plus=83	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.20	new_junction_read_count=27	polymorphism_frequency=1.892e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=13
JC	789	.	Xen14_106	4570	1	Xen14_90	73	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=10	flanking_left=150	flanking_right=73	frequency=1.755e-01	junction_possible_overlap_registers=147	key=Xen14_106__4570__1__Xen14_90__74__-1__1____150__73__0__1	max_left=86	max_left_minus=80	max_left_plus=86	max_min_left=49	max_min_left_minus=49	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=70	max_pos_hash_score=294	max_right=73	max_right_minus=73	max_right_plus=70	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.21	new_junction_read_count=26	polymorphism_frequency=1.755e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=21
JC	790	.	Xen14_107	4859	1	Xen14_159	722	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=6	flanking_left=74	flanking_right=77	frequency=1.944e-01	junction_possible_overlap_registers=148	key=Xen14_107__4859__1__Xen14_159__722__1__0____74__77__1__0	max_left=74	max_left_minus=74	max_left_plus=74	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=74	max_min_right_minus=0	max_min_right_plus=74	max_pos_hash_score=296	max_right=76	max_right_minus=76	max_right_plus=74	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.13	new_junction_read_count=14	polymorphism_frequency=1.944e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=7
JC	791	.	Xen14_107	4859	1	Xen14_85	2720	1	-2	alignment_overlap=-2	coverage_minus=25	coverage_plus=23	flanking_left=74	flanking_right=150	frequency=3.270e-01	junction_possible_overlap_registers=146	key=Xen14_107__4859__1__Xen14_85__2720__1__-2__CC__74__150__1__0	max_left=74	max_left_minus=74	max_left_plus=74	max_min_left=69	max_min_left_minus=51	max_min_left_plus=69	max_min_right=74	max_min_right_minus=74	max_min_right_plus=67	max_pos_hash_score=292	max_right=146	max_right_minus=146	max_right_plus=146	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.54	new_junction_read_count=58	polymorphism_frequency=3.270e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=CC
JC	792	.	Xen14_108	98	1	Xen14_75	12952	-1	-16	alignment_overlap=-16	coverage_minus=26	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=3.465e-01	junction_possible_overlap_registers=132	key=Xen14_108__98__1__Xen14_75__12952__-1__-16__AAAGAAAAACTTTATG__150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=125	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=264	max_right=49	max_right_minus=49	max_right_plus=49	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.46	new_junction_read_count=48	polymorphism_frequency=3.465e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=40	unique_read_sequence=AAAGAAAAACTTTATG
JC	793	.	Xen14_108	128	1	Xen14_27	108	1	0	alignment_overlap=17	coverage_minus=61	coverage_plus=67	flanking_left=150	flanking_right=150	frequency=2.378e-01	junction_possible_overlap_registers=131	key=Xen14_108__128__1__Xen14_27__91__1__17____150__150__0__0	max_left=101	max_left_minus=101	max_left_plus=101	max_min_left=66	max_min_left_minus=65	max_min_left_plus=66	max_min_right=63	max_min_right_minus=63	max_min_right_plus=62	max_pos_hash_score=262	max_right=130	max_right_minus=129	max_right_plus=130	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.65	new_junction_read_count=159	polymorphism_frequency=2.378e-01	pos_hash_score=79	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=130	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=9.77	side_2_overlap=0	side_2_possible_overlap_registers=131	side_2_read_count=904	side_2_redundant=0	total_non_overlap_reads=128
JC	794	.	Xen14_108	2632	1	Xen14_144	1085	-1	0	alignment_overlap=6	coverage_minus=29	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=5.733e-01	junction_possible_overlap_registers=142	key=Xen14_108__2632__1__Xen14_144__1091__-1__6____150__150__0__0	max_left=52	max_left_minus=52	max_left_plus=52	max_min_left=52	max_min_left_minus=52	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=143	max_right_minus=143	max_right_plus=139	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.15	new_junction_read_count=58	polymorphism_frequency=5.733e-01	pos_hash_score=36	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=50
JC	795	.	Xen14_108	4422	1	Xen14_108	4472	1	0	alignment_overlap=16	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=4.113e-02	junction_possible_overlap_registers=132	key=Xen14_108__4422__1__Xen14_108__4456__1__16____150__150__0__0	max_left=38	max_left_minus=38	max_left_plus=0	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=264	max_right=109	max_right_minus=109	max_right_plus=0	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.113e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=16	side_1_possible_overlap_registers=148	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=132	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	796	.	Xen14_109	82	1	Xen14_12	188	-1	-39	alignment_overlap=-39	coverage_minus=3	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.182e-01	junction_possible_overlap_registers=109	key=Xen14_109__82__1__Xen14_12__188__-1__-39__TCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG__150__150__0__0	max_left=32	max_left_minus=32	max_left_plus=31	max_min_left=32	max_min_left_minus=32	max_min_left_plus=31	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=106	max_right_minus=80	max_right_plus=106	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.13	new_junction_read_count=8	polymorphism_frequency=1.182e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=55	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG
JC	797	.	Xen14_109	121	1	Xen14_12	188	-1	-78	alignment_overlap=-78	coverage_minus=8	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=2.595e-01	junction_possible_overlap_registers=70	key=Xen14_109__121__1__Xen14_12__188__-1__-78__TCCCAGACCGAACTGATTGTTGGTCAGTGCGCCTGACAGTCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG__150__150__0__0	max_left=19	max_left_minus=13	max_left_plus=19	max_min_left=19	max_min_left_minus=13	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=140	max_right=67	max_right_minus=67	max_right_plus=60	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.37	new_junction_read_count=15	polymorphism_frequency=2.595e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=74	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=TCCCAGACCGAACTGATTGTTGGTCAGTGCGCCTGACAGTCGAAACTTACAGCTCAGTCTGCCACCCCGTGTCAGCAG
JC	798	.	Xen14_11	64	-1	Xen14_130	38	1	-76	alignment_overlap=-76	coverage_minus=9	coverage_plus=13	flanking_left=64	flanking_right=150	frequency=5.781e-01	junction_possible_overlap_registers=72	key=Xen14_11__64__-1__Xen14_130__38__1__-76__GTGTCAGATGGGCGTCTAAGTTACCAATTCTTGTCTAATGGCTACATACGGCGGTCGGTTTACGCTTACTCTAATT__64__150__0__0	max_left=64	max_left_minus=60	max_left_plus=64	max_min_left=35	max_min_left_minus=0	max_min_left_plus=35	max_min_right=36	max_min_right_minus=36	max_min_right_plus=36	max_pos_hash_score=144	max_right=39	max_right_minus=36	max_right_plus=39	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.56	new_junction_read_count=34	polymorphism_frequency=5.781e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=GTGTCAGATGGGCGTCTAAGTTACCAATTCTTGTCTAATGGCTACATACGGCGGTCGGTTTACGCTTACTCTAATT
JC	799	.	Xen14_11	64	-1	Xen14_138	37	1	-76	alignment_overlap=-76	coverage_minus=9	coverage_plus=13	flanking_left=64	flanking_right=150	frequency=5.596e-01	junction_possible_overlap_registers=72	key=Xen14_11__64__-1__Xen14_138__37__1__-76__GTGTCAGATGGGCGTCTAAGTTACCAATTCTTGTCTAATGGCTACATACGGCGGTCGGTTTACGCTTACTCTAATT__64__150__0__0	max_left=64	max_left_minus=60	max_left_plus=64	max_min_left=35	max_min_left_minus=0	max_min_left_plus=35	max_min_right=36	max_min_right_minus=36	max_min_right_plus=36	max_pos_hash_score=144	max_right=39	max_right_minus=36	max_right_plus=39	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.53	new_junction_read_count=34	polymorphism_frequency=5.596e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=GTGTCAGATGGGCGTCTAAGTTACCAATTCTTGTCTAATGGCTACATACGGCGGTCGGTTTACGCTTACTCTAATT
JC	800	.	Xen14_110	1	1	Xen14_168	26	1	0	alignment_overlap=25	coverage_minus=15	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_110__1__1__Xen14_168__1__1__25____150__150__0__0	max_left=121	max_left_minus=120	max_left_plus=121	max_min_left=61	max_min_left_minus=61	max_min_left_plus=58	max_min_right=62	max_min_right_minus=62	max_min_right_plus=51	max_pos_hash_score=246	max_right=68	max_right_minus=64	max_right_plus=68	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.04	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	801	.	Xen14_110	16	1	Xen14_168	12	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=7.861e-02	junction_possible_overlap_registers=147	key=Xen14_110__16__1__Xen14_168__12__1__-1__G__150__150__0__0	max_left=62	max_left_minus=12	max_left_plus=62	max_min_left=62	max_min_left_minus=12	max_min_left_plus=62	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=137	max_right_minus=137	max_right_plus=133	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=7.861e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	802	.	Xen14_111	1741	1	Xen14_111	1785	1	0	alignment_overlap=7	coverage_minus=12	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=2.224e-02	junction_possible_overlap_registers=141	key=Xen14_111__1741__1__Xen14_111__1778__1__7____150__150__0__0	max_left=47	max_left_minus=47	max_left_plus=19	max_min_left=47	max_min_left_minus=47	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=134	max_right_minus=125	max_right_plus=134	neg_log10_pos_hash_p_value=35.0	new_junction_coverage=0.02	new_junction_read_count=14	polymorphism_frequency=2.224e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=654	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=608	side_2_redundant=0	total_non_overlap_reads=14
JC	803	.	Xen14_111	2994	1	Xen14_111	3025	1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=7.393e-03	junction_possible_overlap_registers=138	key=Xen14_111__2994__1__Xen14_111__3015__1__10____150__150__0__0	max_left=50	max_left_minus=50	max_left_plus=41	max_min_left=50	max_min_left_minus=50	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=118	max_right_minus=118	max_right_plus=99	neg_log10_pos_hash_p_value=39.6	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=7.393e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=732	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=660	side_2_redundant=0	total_non_overlap_reads=5
JC	804	.	Xen14_113	1	1	Xen14_187	464	-1	-22	alignment_overlap=-22	coverage_minus=92	coverage_plus=86	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=126	key=Xen14_113__1__1__Xen14_187__464__-1__-22__CACCCCAACCCGTCACTACGCA__150__150__0__0	max_left=127	max_left_minus=118	max_left_plus=127	max_min_left=61	max_min_left_minus=53	max_min_left_plus=61	max_min_right=62	max_min_right_minus=62	max_min_right_plus=60	max_pos_hash_score=252	max_right=126	max_right_minus=125	max_right_plus=126	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.87	new_junction_read_count=178	polymorphism_frequency=1.000e+00	pos_hash_score=97	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=178	unique_read_sequence=CACCCCAACCCGTCACTACGCA
JC	805	.	Xen14_113	4226	-1	Xen14_3	166153	1	-11	alignment_overlap=-11	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=8.636e-02	junction_possible_overlap_registers=137	key=Xen14_113__4226__-1__Xen14_3__166153__1__-11__TAATTTGATGC__150__150__0__0	max_left=3	max_left_minus=3	max_left_plus=3	max_min_left=3	max_min_left_minus=3	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=137	max_right_minus=137	max_right_plus=136	neg_log10_pos_hash_p_value=16.7	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=8.636e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=116	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=TAATTTGATGC
JC	806	.	Xen14_113	4275	-1	Xen14_123	2714	-1	-44	alignment_overlap=-44	coverage_minus=14	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=104	key=Xen14_113__4275__-1__Xen14_123__2714__-1__-44__TACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGA__150__150__0__0	max_left=77	max_left_minus=77	max_left_plus=76	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=37	max_pos_hash_score=208	max_right=44	max_right_minus=44	max_right_plus=37	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.05	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=TACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGA
JC	807	.	Xen14_113	4275	-1	Xen14_3	166191	1	0	alignment_overlap=38	coverage_minus=46	coverage_plus=38	flanking_left=150	flanking_right=121	frequency=6.481e-01	junction_possible_overlap_registers=110	key=Xen14_113__4275__-1__Xen14_3__166153__1__38____150__121__0__0	max_left=111	max_left_minus=106	max_left_plus=111	max_min_left=55	max_min_left_minus=55	max_min_left_plus=46	max_min_right=56	max_min_right_minus=53	max_min_right_plus=56	max_pos_hash_score=220	max_right=88	max_right_minus=88	max_right_plus=76	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=93	polymorphism_frequency=6.481e-01	pos_hash_score=63	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=84
JC	808	.	Xen14_115	77	-1	Xen14_43	39557	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=16	flanking_left=77	flanking_right=150	frequency=5.177e-01	junction_possible_overlap_registers=148	key=Xen14_115__77__-1__Xen14_43__39557__-1__0____77__150__1__0	max_left=77	max_left_minus=76	max_left_plus=77	max_min_left=74	max_min_left_minus=74	max_min_left_plus=66	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=132	max_right_minus=132	max_right_plus=128	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.57	new_junction_read_count=73	polymorphism_frequency=5.177e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=53
JC	809	.	Xen14_115	77	-1	Xen14_96	3984	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=4	flanking_left=77	flanking_right=150	frequency=1.544e-01	junction_possible_overlap_registers=148	key=Xen14_115__77__-1__Xen14_96__3984__-1__0____77__150__1__0	max_left=36	max_left_minus=36	max_left_plus=30	max_min_left=36	max_min_left_minus=36	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=141	max_right_plus=149	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=21	polymorphism_frequency=1.544e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=17
JC	810	.	Xen14_115	78	-1	Xen14_168	1	1	-35	alignment_overlap=-35	coverage_minus=54	coverage_plus=36	flanking_left=78	flanking_right=150	frequency=1	junction_possible_overlap_registers=113	key=Xen14_115__78__-1__Xen14_168__1__1__-35__GCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGA__78__150__1__0	max_left=78	max_left_minus=77	max_left_plus=78	max_min_left=55	max_min_left_minus=55	max_min_left_plus=48	max_min_right=50	max_min_right_minus=39	max_min_right_plus=50	max_pos_hash_score=226	max_right=113	max_right_minus=113	max_right_plus=110	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.14	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90	unique_read_sequence=GCATAGCCGGAGGTTTTTCAAATGCGCCTATAAGA
JC	811	.	Xen14_117	77	-1	Xen14_7	136257	1	0	alignment_overlap=2	coverage_minus=15	coverage_plus=19	flanking_left=75	flanking_right=150	frequency=3.247e-01	junction_possible_overlap_registers=146	key=Xen14_117__77__-1__Xen14_7__136255__1__2____75__150__0__0	max_left=71	max_left_minus=71	max_left_plus=43	max_min_left=71	max_min_left_minus=71	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=147	max_right_minus=134	max_right_plus=147	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.42	new_junction_read_count=34	polymorphism_frequency=3.247e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=34
JC	812	.	Xen14_117	3012	-1	Xen14_148	85	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.445e-01	junction_possible_overlap_registers=147	key=Xen14_117__3012__-1__Xen14_148__85__1__-1__G__150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=115	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=35	max_min_right_minus=32	max_min_right_plus=35	max_pos_hash_score=294	max_right=75	max_right_minus=75	max_right_plus=35	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=1.445e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=G
JC	813	.	Xen14_117	3012	-1	Xen14_25	73181	1	0	alignment_overlap=17	coverage_minus=8	coverage_plus=10	flanking_left=150	flanking_right=60	frequency=1.636e-01	junction_possible_overlap_registers=131	key=Xen14_117__3012__-1__Xen14_25__73164__1__17____150__60__0__1	max_left=100	max_left_minus=100	max_left_plus=98	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=60	max_min_right_plus=58	max_pos_hash_score=262	max_right=60	max_right_minus=60	max_right_plus=58	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.27	new_junction_read_count=18	polymorphism_frequency=1.636e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=17	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	814	.	Xen14_117	3027	-1	Xen14_194	327	-1	-20	alignment_overlap=-20	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=5.103e-02	junction_possible_overlap_registers=128	key=Xen14_117__3027__-1__Xen14_194__327__-1__-20__CCGGAGCCGGACTCCGGTTT__150__150__0__0	max_left=80	max_left_minus=64	max_left_plus=80	max_min_left=64	max_min_left_minus=64	max_min_left_plus=0	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=256	max_right=67	max_right_minus=67	max_right_plus=63	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.06	new_junction_read_count=4	polymorphism_frequency=5.103e-02	pos_hash_score=3	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=CCGGAGCCGGACTCCGGTTT
JC	815	.	Xen14_118	1	1	Xen14_184	442	-1	0	alignment_overlap=31	coverage_minus=23	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_118__1__1__Xen14_184__473__-1__31____150__150__0__0	max_left=118	max_left_minus=118	max_left_plus=102	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=57	max_min_right_minus=57	max_min_right_plus=57	max_pos_hash_score=234	max_right=72	max_right_minus=62	max_right_plus=72	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.09	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39
JC	816	.	Xen14_118	3283	1	Xen14_43	39549	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=16	flanking_left=73	flanking_right=150	frequency=2.872e-01	junction_possible_overlap_registers=148	key=Xen14_118__3283__1__Xen14_43__39549__1__0____73__150__1__0	max_left=70	max_left_minus=54	max_left_plus=70	max_min_left=70	max_min_left_minus=54	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=148	max_right_minus=148	max_right_plus=144	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.33	new_junction_read_count=27	polymorphism_frequency=2.872e-01	pos_hash_score=18	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=26
JC	817	.	Xen14_118	3283	1	Xen14_96	5676	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=4	flanking_left=73	flanking_right=150	frequency=1.493e-01	junction_possible_overlap_registers=148	key=Xen14_118__3283__1__Xen14_96__5676__-1__0____73__150__1__0	max_left=25	max_left_minus=25	max_left_plus=19	max_min_left=25	max_min_left_minus=25	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=136	max_right_minus=136	max_right_plus=134	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.493e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=10
JC	818	.	Xen14_118	3284	1	Xen14_96	3975	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=7	flanking_left=72	flanking_right=150	frequency=1.305e-01	junction_possible_overlap_registers=147	key=Xen14_118__3283__1__Xen14_96__3975__1__1____72__150__1__0	max_left=72	max_left_minus=72	max_left_plus=69	max_min_left=70	max_min_left_minus=70	max_min_left_plus=69	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=294	max_right=141	max_right_minus=131	max_right_plus=141	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.18	new_junction_read_count=17	polymorphism_frequency=1.305e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=16
JC	819	.	Xen14_119	73	-1	Xen14_134	121	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=5	flanking_left=73	flanking_right=120	frequency=2.084e-01	junction_possible_overlap_registers=147	key=Xen14_119__74__-1__Xen14_134__121__-1__1____73__120__1__0	max_left=73	max_left_minus=70	max_left_plus=73	max_min_left=73	max_min_left_minus=70	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=120	max_right_minus=120	max_right_plus=108	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.17	new_junction_read_count=17	polymorphism_frequency=2.084e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=16
JC	820	.	Xen14_119	73	-1	Xen14_168	629	-1	-15	alignment_overlap=-15	coverage_minus=13	coverage_plus=21	flanking_left=73	flanking_right=150	frequency=1	junction_possible_overlap_registers=133	key=Xen14_119__73__-1__Xen14_168__629__-1__-15__AGCTAGGCTGGGGGG__73__150__1__0	max_left=73	max_left_minus=73	max_left_plus=62	max_min_left=62	max_min_left_minus=61	max_min_left_plus=62	max_min_right=62	max_min_right_minus=62	max_min_right_plus=57	max_pos_hash_score=266	max_right=134	max_right_minus=134	max_right_plus=132	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.04	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34	unique_read_sequence=AGCTAGGCTGGGGGG
JC	821	.	Xen14_119	73	-1	Xen14_25	77	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=73	flanking_right=77	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_119__73__-1__Xen14_25__77__-1__0____73__77__1__1	max_left=71	max_left_minus=71	max_left_plus=0	max_min_left=71	max_min_left_minus=71	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=0	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	822	.	Xen14_119	3193	-1	Xen14_168	12	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.008e-02	junction_possible_overlap_registers=147	key=Xen14_119__3193__-1__Xen14_168__12__1__-1__G__150__150__0__0	max_left=55	max_left_minus=12	max_left_plus=55	max_min_left=55	max_min_left_minus=12	max_min_left_plus=55	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=137	max_right_minus=137	max_right_plus=133	neg_log10_pos_hash_p_value=12.4	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=6.008e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=G
JC	823	.	Xen14_119	3208	-1	Xen14_168	26	1	0	alignment_overlap=25	coverage_minus=26	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_119__3208__-1__Xen14_168__1__1__25____150__150__0__0	max_left=121	max_left_minus=121	max_left_plus=119	max_min_left=62	max_min_left_minus=60	max_min_left_plus=62	max_min_right=62	max_min_right_minus=59	max_min_right_plus=62	max_pos_hash_score=246	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.07	new_junction_read_count=54	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54
JC	824	.	Xen14_12	25	1	Xen14_166	677	-1	0	alignment_overlap=8	coverage_minus=38	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1.181e-01	junction_possible_overlap_registers=140	key=Xen14_12__25__1__Xen14_166__685__-1__8____150__150__0__0	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=68	max_min_left_minus=68	max_min_left_plus=67	max_min_right=71	max_min_right_minus=69	max_min_right_plus=71	max_pos_hash_score=280	max_right=134	max_right_minus=134	max_right_plus=133	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.05	new_junction_read_count=61	polymorphism_frequency=1.181e-01	pos_hash_score=46	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=11.61	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=963	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59
JC	825	.	Xen14_12	188	-1	Xen14_29	60	1	0	alignment_overlap=59	coverage_minus=23	coverage_plus=19	flanking_left=129	flanking_right=150	frequency=6.392e-01	junction_possible_overlap_registers=89	key=Xen14_12__188__-1__Xen14_29__1__1__59____129__150__0__0	max_left=90	max_left_minus=90	max_left_plus=81	max_min_left=32	max_min_left_minus=21	max_min_left_plus=32	max_min_right=45	max_min_right_minus=45	max_min_right_plus=27	max_pos_hash_score=178	max_right=88	max_right_minus=88	max_right_plus=82	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.34	new_junction_read_count=57	polymorphism_frequency=6.392e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=59	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=89	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	826	.	Xen14_12	188	-1	Xen14_68	16331	1	0	alignment_overlap=0	coverage_minus=25	coverage_plus=15	flanking_left=150	flanking_right=52	frequency=3.354e-01	junction_possible_overlap_registers=148	key=Xen14_12__188__-1__Xen14_68__16331__1__0____150__52__0__1	max_left=148	max_left_minus=148	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=52	max_min_right_minus=52	max_min_right_plus=51	max_pos_hash_score=296	max_right=52	max_right_minus=52	max_right_plus=51	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.41	new_junction_read_count=54	polymorphism_frequency=3.354e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40
JC	827	.	Xen14_12	189	-1	Xen14_21	59	-1	0	alignment_overlap=1	coverage_minus=31	coverage_plus=31	flanking_left=150	flanking_right=59	frequency=4.344e-01	junction_possible_overlap_registers=147	key=Xen14_12__189__-1__Xen14_21__60__-1__1____150__59__0__1	max_left=148	max_left_minus=147	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=59	max_pos_hash_score=294	max_right=59	max_right_minus=59	max_right_plus=59	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.99	new_junction_read_count=74	polymorphism_frequency=4.344e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=62
JC	828	.	Xen14_121	1	1	Xen14_184	443	-1	0	alignment_overlap=30	coverage_minus=27	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=118	key=Xen14_121__1__1__Xen14_184__473__-1__30____150__150__0__0	max_left=116	max_left_minus=115	max_left_plus=116	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=60	max_min_right_minus=60	max_min_right_plus=53	max_pos_hash_score=236	max_right=74	max_right_minus=74	max_right_plus=73	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.13	new_junction_read_count=61	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=30	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=118	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54
JC	829	.	Xen14_123	1	1	Xen14_205	404	-1	-34	alignment_overlap=-34	coverage_minus=117	coverage_plus=115	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=114	key=Xen14_123__1__1__Xen14_205__404__-1__-34__ACGCCTTTCCAGACGCTTCCACTAACACACACAC__150__150__0__0	max_left=115	max_left_minus=114	max_left_plus=115	max_min_left=57	max_min_left_minus=56	max_min_left_plus=57	max_min_right=58	max_min_right_minus=56	max_min_right_plus=58	max_pos_hash_score=228	max_right=115	max_right_minus=114	max_right_plus=115	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.28	new_junction_read_count=234	polymorphism_frequency=1.000e+00	pos_hash_score=125	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=232	unique_read_sequence=ACGCCTTTCCAGACGCTTCCACTAACACACACAC
JC	830	.	Xen14_123	1	1	Xen14_205	404	-1	-34	alignment_overlap=-34	coverage_minus=322	coverage_plus=345	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=114	key=Xen14_123__1__1__Xen14_205__404__-1__-34__GCGCCTTTCCAGACGCTTCCACTAACACACACAT__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=115	max_min_left=57	max_min_left_minus=57	max_min_left_plus=56	max_min_right=58	max_min_right_minus=58	max_min_right_plus=58	max_pos_hash_score=228	max_right=115	max_right_minus=115	max_right_plus=115	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.80	new_junction_read_count=670	polymorphism_frequency=1.000e+00	pos_hash_score=180	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=667	unique_read_sequence=GCGCCTTTCCAGACGCTTCCACTAACACACACAT
JC	831	.	Xen14_123	2652	-1	Xen14_123	2664	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=9.160e-03	junction_possible_overlap_registers=142	key=Xen14_123__2652__-1__Xen14_123__2670__-1__6____150__150__0__0	max_left=112	max_left_minus=86	max_left_plus=112	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=47	max_min_right_minus=35	max_min_right_plus=47	max_pos_hash_score=284	max_right=47	max_right_minus=35	max_right_plus=47	neg_log10_pos_hash_p_value=77.1	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=9.160e-03	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.32	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=370	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.26	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=294	side_2_redundant=0	total_non_overlap_reads=3
JC	832	.	Xen14_123	2714	-1	Xen14_17	1	1	-19	alignment_overlap=-19	coverage_minus=31	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=129	key=Xen14_123__2714__-1__Xen14_17__1__1__-19__TCCCATGCCGAACTCAGAA__150__150__0__0	max_left=52	max_left_minus=51	max_left_plus=52	max_min_left=52	max_min_left_minus=51	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=258	max_right=130	max_right_minus=128	max_right_plus=130	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.10	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58	unique_read_sequence=TCCCATGCCGAACTCAGAA
JC	833	.	Xen14_123	2714	-1	Xen14_4	1	1	-5	alignment_overlap=-5	coverage_minus=3	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=143	key=Xen14_123__2714__-1__Xen14_4__1__1__-5__CCCCA__150__150__0__0	max_left=44	max_left_minus=32	max_left_plus=44	max_min_left=44	max_min_left_minus=32	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=126	max_right_minus=126	max_right_plus=116	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.04	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18	unique_read_sequence=CCCCA
JC	834	.	Xen14_123	2714	-1	Xen14_4	1	1	-5	alignment_overlap=-5	coverage_minus=13	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=143	key=Xen14_123__2714__-1__Xen14_4__1__1__-5__TCCCA__150__150__0__0	max_left=44	max_left_minus=37	max_left_plus=44	max_min_left=44	max_min_left_minus=37	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=144	max_right_minus=144	max_right_plus=144	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.06	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36	unique_read_sequence=TCCCA
JC	835	.	Xen14_123	2714	-1	Xen14_9	1	1	-15	alignment_overlap=-15	coverage_minus=63	coverage_plus=124	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=133	key=Xen14_123__2714__-1__Xen14_9__1__1__-15__CCCCATGCCGAACTC__150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=134	max_min_left=67	max_min_left_minus=67	max_min_left_plus=67	max_min_right=56	max_min_right_minus=56	max_min_right_plus=55	max_pos_hash_score=266	max_right=133	max_right_minus=133	max_right_plus=129	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.32	new_junction_read_count=190	polymorphism_frequency=1.000e+00	pos_hash_score=110	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=187	unique_read_sequence=CCCCATGCCGAACTC
JC	836	.	Xen14_124	1	1	Xen14_165	691	-1	-1	alignment_overlap=-1	coverage_minus=62	coverage_plus=42	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_124__1__1__Xen14_165__691__-1__-1__A__150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=73	max_min_left_minus=73	max_min_left_plus=71	max_min_right=72	max_min_right_minus=72	max_min_right_plus=68	max_pos_hash_score=294	max_right=148	max_right_minus=146	max_right_plus=148	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.70	new_junction_read_count=104	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=104	unique_read_sequence=A
JC	837	.	Xen14_124	1	1	Xen14_165	691	-1	-1	alignment_overlap=-1	coverage_minus=55	coverage_plus=42	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_124__1__1__Xen14_165__691__-1__-1__G__150__150__0__0	max_left=148	max_left_minus=146	max_left_plus=148	max_min_left=74	max_min_left_minus=74	max_min_left_plus=72	max_min_right=67	max_min_right_minus=67	max_min_right_plus=63	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=147	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.66	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=97	unique_read_sequence=G
JC	838	.	Xen14_124	2576	-1	Xen14_21	74761	1	-28	alignment_overlap=-28	coverage_minus=17	coverage_plus=12	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=120	key=Xen14_124__2576__-1__Xen14_21__74761__1__-28__CCTTCGGTTTTCATCAGTCCTGATAACA__150__77__0__1	max_left=121	max_left_minus=118	max_left_plus=121	max_min_left=60	max_min_left_minus=60	max_min_left_plus=57	max_min_right=57	max_min_right_minus=57	max_min_right_plus=53	max_pos_hash_score=240	max_right=76	max_right_minus=76	max_right_plus=69	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.42	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29	unique_read_sequence=CCTTCGGTTTTCATCAGTCCTGATAACA
JC	839	.	Xen14_125	2458	-1	Xen14_165	35	1	0	alignment_overlap=34	coverage_minus=8	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=2.996e-01	junction_possible_overlap_registers=114	key=Xen14_125__2458__-1__Xen14_165__1__1__34____150__150__0__0	max_left=59	max_left_minus=59	max_left_plus=51	max_min_left=53	max_min_left_minus=53	max_min_left_plus=51	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=228	max_right=115	max_right_minus=115	max_right_plus=108	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.12	new_junction_read_count=14	polymorphism_frequency=2.996e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=34	side_1_possible_overlap_registers=148	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=114	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	840	.	Xen14_125	2476	-1	Xen14_165	17	1	0	alignment_overlap=16	coverage_minus=12	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=5.211e-01	junction_possible_overlap_registers=132	key=Xen14_125__2476__-1__Xen14_165__1__1__16____150__150__0__0	max_left=45	max_left_minus=44	max_left_plus=45	max_min_left=45	max_min_left_minus=44	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=264	max_right=131	max_right_minus=120	max_right_plus=131	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.24	new_junction_read_count=33	polymorphism_frequency=5.211e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=16	side_1_possible_overlap_registers=148	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=132	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	841	.	Xen14_126	56	1	Xen14_79	12483	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=7.847e-01	junction_possible_overlap_registers=145	key=Xen14_126__56__1__Xen14_79__12486__-1__3____150__150__0__0	max_left=142	max_left_minus=142	max_left_plus=119	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=71	max_min_right_minus=3	max_min_right_plus=71	max_pos_hash_score=290	max_right=71	max_right_minus=3	max_right_plus=71	neg_log10_pos_hash_p_value=17.9	new_junction_coverage=0.04	new_junction_read_count=9	polymorphism_frequency=7.847e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=8
JC	842	.	Xen14_126	1701	1	Xen14_60	21844	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=6.836e-02	junction_possible_overlap_registers=147	key=Xen14_126__1701__1__Xen14_60__21844__1__-1__C__150__150__0__0	max_left=121	max_left_minus=119	max_left_plus=121	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=31	max_min_right_minus=30	max_min_right_plus=31	max_pos_hash_score=294	max_right=31	max_right_minus=30	max_right_plus=31	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.05	new_junction_read_count=9	polymorphism_frequency=6.836e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=C
JC	843	.	Xen14_126	1701	1	Xen14_85	2720	1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=1.191e-01	junction_possible_overlap_registers=147	key=Xen14_126__1701__1__Xen14_85__2720__1__-1__C__150__150__0__0	max_left=121	max_left_minus=119	max_left_plus=121	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=45	max_min_right_minus=39	max_min_right_plus=45	max_pos_hash_score=294	max_right=45	max_right_minus=39	max_right_plus=45	neg_log10_pos_hash_p_value=14.2	new_junction_coverage=0.09	new_junction_read_count=19	polymorphism_frequency=1.191e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=19	unique_read_sequence=C
JC	844	.	Xen14_126	1702	1	Xen14_130	31	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=9.778e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_130__31__1__0____150__150__0__0	max_left=149	max_left_minus=137	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=13	max_right_plus=13	neg_log10_pos_hash_p_value=16.7	new_junction_coverage=0.05	new_junction_read_count=11	polymorphism_frequency=9.778e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.30	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=11
JC	845	.	Xen14_126	1702	1	Xen14_138	30	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=9.483e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_138__30__1__0____150__150__0__0	max_left=149	max_left_minus=137	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=13	max_right_plus=13	neg_log10_pos_hash_p_value=15.1	new_junction_coverage=0.05	new_junction_read_count=11	polymorphism_frequency=9.483e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=11
JC	846	.	Xen14_126	1702	1	Xen14_159	722	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=77	frequency=2.941e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_159__722__1__0____150__77__0__1	max_left=120	max_left_minus=120	max_left_plus=118	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=41	max_min_right_plus=39	max_pos_hash_score=296	max_right=41	max_right_minus=41	max_right_plus=39	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.02	new_junction_read_count=5	polymorphism_frequency=2.941e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	847	.	Xen14_126	1702	1	Xen14_71	14273	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=9.865e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_71__14273__-1__0____150__150__0__0	max_left=149	max_left_minus=137	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=13	max_right_plus=13	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.06	new_junction_read_count=11	polymorphism_frequency=9.865e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.37	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=11
JC	848	.	Xen14_126	1702	1	Xen14_75	13021	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=9.483e-02	junction_possible_overlap_registers=148	key=Xen14_126__1702__1__Xen14_75__13021__-1__0____150__150__0__0	max_left=149	max_left_minus=137	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=13	max_pos_hash_score=296	max_right=13	max_right_minus=13	max_right_plus=13	neg_log10_pos_hash_p_value=14.8	new_junction_coverage=0.05	new_junction_read_count=11	polymorphism_frequency=9.483e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.37	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=11
JC	849	.	Xen14_126	1862	1	Xen14_126	1889	1	-1	alignment_overlap=-1	coverage_minus=18	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.813e-02	junction_possible_overlap_registers=147	key=Xen14_126__1862__1__Xen14_126__1889__1__-1__A__150__150__0__0	max_left=9	max_left_minus=3	max_left_plus=9	max_min_left=9	max_min_left_minus=3	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=20.5	new_junction_coverage=0.10	new_junction_read_count=27	polymorphism_frequency=1.813e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=5.20	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1476	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=5.18	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1469	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=A
JC	850	.	Xen14_126	2082	-1	Xen14_206	403	-1	-47	alignment_overlap=-47	coverage_minus=233	coverage_plus=298	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=101	key=Xen14_126__2082__-1__Xen14_206__403__-1__-47__TTCCACTCAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCC__150__150__0__0	max_left=102	max_left_minus=102	max_left_plus=102	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=51	max_min_right_minus=51	max_min_right_plus=51	max_pos_hash_score=202	max_right=102	max_right_minus=102	max_right_plus=102	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.59	new_junction_read_count=735	polymorphism_frequency=9.139e-01	pos_hash_score=130	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=203	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=531	unique_read_sequence=TTCCACTCAGACCAGAGTCAGTGCCAGTTCCTGCAAGGTGGAATTCC
JC	851	.	Xen14_126	2200	-1	Xen14_180	75	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=75	frequency=6.250e-02	junction_possible_overlap_registers=148	key=Xen14_126__2200__-1__Xen14_180__75__-1__0____150__75__0__1	max_left=108	max_left_minus=108	max_left_plus=107	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=42	max_min_right_plus=44	max_pos_hash_score=296	max_right=44	max_right_minus=42	max_right_plus=44	neg_log10_pos_hash_p_value=23.2	new_junction_coverage=0.05	new_junction_read_count=10	polymorphism_frequency=6.250e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	852	.	Xen14_126	2200	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=6.601e-02	junction_possible_overlap_registers=148	key=Xen14_126__2200__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=108	max_left_minus=108	max_left_plus=107	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=42	max_min_right_plus=44	max_pos_hash_score=296	max_right=44	max_right_minus=42	max_right_plus=44	neg_log10_pos_hash_p_value=12.8	new_junction_coverage=0.05	new_junction_read_count=10	polymorphism_frequency=6.601e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=4
JC	853	.	Xen14_126	2440	1	Xen14_99	6045	-1	-65	alignment_overlap=-65	coverage_minus=17	coverage_plus=24	flanking_left=76	flanking_right=150	frequency=1	junction_possible_overlap_registers=83	key=Xen14_126__2440__1__Xen14_99__6045__-1__-65__TCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCAGAT__76__150__1__0	max_left=76	max_left_minus=47	max_left_plus=76	max_min_left=39	max_min_left_minus=39	max_min_left_plus=38	max_min_right=41	max_min_right_minus=41	max_min_right_plus=34	max_pos_hash_score=166	max_right=82	max_right_minus=82	max_right_plus=79	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.43	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=41	unique_read_sequence=TCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCAGAT
JC	854	.	Xen14_127	36	1	Xen14_127	93	1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=7.821e-03	junction_possible_overlap_registers=141	key=Xen14_127__36__1__Xen14_127__86__1__7____150__150__0__0	max_left=75	max_left_minus=75	max_left_plus=50	max_min_left=57	max_min_left_minus=57	max_min_left_plus=50	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=282	max_right=135	max_right_minus=86	max_right_plus=135	neg_log10_pos_hash_p_value=51.8	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=7.821e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.41	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=432	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=857	side_2_redundant=0	total_non_overlap_reads=5
JC	855	.	Xen14_127	46	1	Xen14_127	83	1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.941e-03	junction_possible_overlap_registers=140	key=Xen14_127__46__1__Xen14_127__75__1__8____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=0	max_min_left=31	max_min_left_minus=31	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=280	max_right=113	max_right_minus=113	max_right_plus=0	neg_log10_pos_hash_p_value=51.7	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=7.941e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=494	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=782	side_2_redundant=0	total_non_overlap_reads=5
JC	856	.	Xen14_127	2074	-1	Xen14_127	2089	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1.118e-02	junction_possible_overlap_registers=139	key=Xen14_127__2074__-1__Xen14_127__2098__-1__9____150__150__0__0	max_left=131	max_left_minus=0	max_left_plus=131	max_min_left=55	max_min_left_minus=0	max_min_left_plus=55	max_min_right=32	max_min_right_minus=0	max_min_right_plus=32	max_pos_hash_score=278	max_right=86	max_right_minus=0	max_right_plus=86	neg_log10_pos_hash_p_value=49.4	new_junction_coverage=0.01	new_junction_read_count=8	polymorphism_frequency=1.118e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=852	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=615	side_2_redundant=0	total_non_overlap_reads=8
JC	857	.	Xen14_129	72	-1	Xen14_2	77	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=72	flanking_right=77	frequency=NA	junction_possible_overlap_registers=148	key=Xen14_129__72__-1__Xen14_2__77__-1__0____72__77__1__1	max_left=72	max_left_minus=68	max_left_plus=72	max_min_left=72	max_min_left_minus=68	max_min_left_plus=72	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=73	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.17	new_junction_read_count=17	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	858	.	Xen14_13	98318	-1	Xen14_168	590	-1	0	alignment_overlap=39	coverage_minus=19	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=109	key=Xen14_13__98318__-1__Xen14_168__629__-1__39____150__150__0__0	max_left=103	max_left_minus=103	max_left_plus=98	max_min_left=51	max_min_left_minus=51	max_min_left_plus=51	max_min_right=53	max_min_right_minus=53	max_min_right_plus=49	max_pos_hash_score=218	max_right=72	max_right_minus=72	max_right_plus=70	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.06	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=109	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35
JC	859	.	Xen14_131	846	1	Xen14_151	1	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=7.313e-01	junction_possible_overlap_registers=148	key=Xen14_131__846__1__Xen14_151__1__1__0____150__150__0__0	max_left=147	max_left_minus=145	max_left_plus=147	max_min_left=38	max_min_left_minus=38	max_min_left_plus=21	max_min_right=70	max_min_right_minus=70	max_min_right_plus=29	max_pos_hash_score=296	max_right=149	max_right_minus=149	max_right_plus=144	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.44	new_junction_read_count=49	polymorphism_frequency=7.313e-01	pos_hash_score=32	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=42
JC	860	.	Xen14_132	1586	1	Xen14_90	74	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=42	flanking_left=150	flanking_right=74	frequency=2.901e-01	junction_possible_overlap_registers=148	key=Xen14_132__1586__1__Xen14_90__74__-1__0____150__74__0__1	max_left=143	max_left_minus=143	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=74	max_min_right_minus=73	max_min_right_plus=74	max_pos_hash_score=296	max_right=74	max_right_minus=73	max_right_plus=74	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.48	new_junction_read_count=76	polymorphism_frequency=2.901e-01	pos_hash_score=43	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=186	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=66
JC	861	.	Xen14_134	121	-1	Xen14_16	81842	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=120	flanking_right=100	frequency=7.248e-02	junction_possible_overlap_registers=147	key=Xen14_134__121__-1__Xen14_16__81841__1__1____120__100__0__0	max_left=84	max_left_minus=84	max_left_plus=56	max_min_left=66	max_min_left_minus=66	max_min_left_plus=56	max_min_right=19	max_min_right_minus=19	max_min_right_plus=0	max_pos_hash_score=294	max_right=93	max_right_minus=83	max_right_plus=93	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=7.248e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=3
JC	862	.	Xen14_134	124	1	Xen14_80	11959	1	-6	alignment_overlap=-6	coverage_minus=3	coverage_plus=7	flanking_left=150	flanking_right=77	frequency=2.800e-01	junction_possible_overlap_registers=142	key=Xen14_134__124__1__Xen14_80__11959__1__-6__CCCTGT__150__77__0__1	max_left=97	max_left_minus=83	max_left_plus=97	max_min_left=70	max_min_left_minus=61	max_min_left_plus=70	max_min_right=61	max_min_right_minus=61	max_min_right_plus=47	max_pos_hash_score=284	max_right=77	max_right_minus=77	max_right_plus=74	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.22	new_junction_read_count=25	polymorphism_frequency=2.800e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10	unique_read_sequence=CCCTGT
JC	863	.	Xen14_134	212	1	Xen14_134	213	-1	-13	alignment_overlap=-13	coverage_minus=18	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=3.464e-01	junction_possible_overlap_registers=135	key=Xen14_134__212__1__Xen14_134__213__-1__-13__GTATCAGTTAGCG__150__150__0__0	max_left=136	max_left_minus=136	max_left_plus=136	max_min_left=66	max_min_left_minus=57	max_min_left_plus=66	max_min_right=63	max_min_right_minus=63	max_min_right_plus=57	max_pos_hash_score=270	max_right=100	max_right_minus=100	max_right_plus=87	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.46	new_junction_read_count=44	polymorphism_frequency=3.464e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=GTATCAGTTAGCG
JC	864	.	Xen14_134	693	1	Xen14_175	119	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=12	flanking_left=150	flanking_right=119	frequency=1.290e-01	junction_possible_overlap_registers=145	key=Xen14_134__693__1__Xen14_175__119__-1__-3__TGA__150__119__0__0	max_left=141	max_left_minus=124	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=23	max_min_right_minus=23	max_min_right_plus=23	max_pos_hash_score=290	max_right=23	max_right_minus=23	max_right_plus=23	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.14	new_junction_read_count=14	polymorphism_frequency=1.290e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=TGA
JC	865	.	Xen14_134	693	1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=150	flanking_right=84	frequency=7.477e-02	junction_possible_overlap_registers=148	key=Xen14_134__693__1__Xen14_47__36191__1__0____150__84__0__0	max_left=69	max_left_minus=68	max_left_plus=69	max_min_left=69	max_min_left_minus=68	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=81	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=7.477e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=6
JC	866	.	Xen14_134	693	1	Xen14_90	74	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=20	flanking_left=150	flanking_right=74	frequency=2.478e-01	junction_possible_overlap_registers=148	key=Xen14_134__693__1__Xen14_90__74__-1__0____150__74__0__1	max_left=141	max_left_minus=124	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=296	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.24	new_junction_read_count=28	polymorphism_frequency=2.478e-01	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	867	.	Xen14_134	695	-1	Xen14_162	691	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=13	flanking_left=150	flanking_right=75	frequency=2.764e-01	junction_possible_overlap_registers=148	key=Xen14_134__695__-1__Xen14_162__691__1__0____150__75__0__1	max_left=143	max_left_minus=133	max_left_plus=143	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=68	max_min_right_minus=56	max_min_right_plus=68	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=68	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.26	new_junction_read_count=34	polymorphism_frequency=2.764e-01	pos_hash_score=19	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	868	.	Xen14_134	1002	1	Xen14_96	5905	-1	-50	alignment_overlap=-50	coverage_minus=24	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=4.768e-01	junction_possible_overlap_registers=98	key=Xen14_134__1002__1__Xen14_96__5905__-1__-50__TATCAGGAAGAGCAGACGACACGATAACAGGGTTGTTGGTGCGGGGGGCT__150__150__0__0	max_left=96	max_left_minus=92	max_left_plus=96	max_min_left=45	max_min_left_minus=45	max_min_left_plus=37	max_min_right=47	max_min_right_minus=47	max_min_right_plus=40	max_pos_hash_score=196	max_right=97	max_right_minus=90	max_right_plus=97	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.67	new_junction_read_count=51	polymorphism_frequency=4.768e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=TATCAGGAAGAGCAGACGACACGATAACAGGGTTGTTGGTGCGGGGGGCT
JC	869	.	Xen14_136	1	1	Xen14_170	580	-1	0	alignment_overlap=39	coverage_minus=37	coverage_plus=39	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=109	key=Xen14_136__1__1__Xen14_170__619__-1__39____150__150__0__0	max_left=110	max_left_minus=110	max_left_plus=103	max_min_left=38	max_min_left_minus=32	max_min_left_plus=38	max_min_right=38	max_min_right_minus=38	max_min_right_plus=38	max_pos_hash_score=218	max_right=110	max_right_minus=110	max_right_plus=105	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=39	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=109	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76
JC	870	.	Xen14_136	77	-1	Xen14_158	76	-1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=10	flanking_left=76	flanking_right=76	frequency=NA	junction_possible_overlap_registers=147	key=Xen14_136__77__-1__Xen14_158__77__-1__1____76__76__1__1	max_left=76	max_left_minus=73	max_left_plus=76	max_min_left=74	max_min_left_minus=73	max_min_left_plus=74	max_min_right=74	max_min_right_minus=32	max_min_right_plus=74	max_pos_hash_score=294	max_right=76	max_right_minus=76	max_right_plus=75	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.25	new_junction_read_count=31	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	871	.	Xen14_136	1484	1	Xen14_143	808	1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=2	flanking_left=84	flanking_right=150	frequency=6.456e-03	junction_possible_overlap_registers=146	key=Xen14_136__1484__1__Xen14_143__808__1__-2__GT__84__150__0__0	max_left=83	max_left_minus=81	max_left_plus=83	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=66	max_pos_hash_score=292	max_right=68	max_right_minus=68	max_right_plus=66	neg_log10_pos_hash_p_value=21.3	new_junction_coverage=0.01	new_junction_read_count=4	polymorphism_frequency=6.456e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1165	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GT
JC	872	.	Xen14_136	1566	-1	Xen14_141	1	1	-1	alignment_overlap=-1	coverage_minus=416	coverage_plus=329	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_136__1566__-1__Xen14_141__1__1__-1__C__150__150__0__0	max_left=143	max_left_minus=142	max_left_plus=143	max_min_left=71	max_min_left_minus=71	max_min_left_plus=71	max_min_right=72	max_min_right_minus=72	max_min_right_plus=68	max_pos_hash_score=294	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=-0.0	new_junction_coverage=0.73	new_junction_read_count=749	polymorphism_frequency=9.967e-01	pos_hash_score=162	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=745	unique_read_sequence=C
JC	873	.	Xen14_138	75	-1	Xen14_45	40401	-1	-62	alignment_overlap=-62	coverage_minus=35	coverage_plus=45	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen14_138__75__-1__Xen14_45__40401__-1__-62__GAAAGGGGGGATTTCCGGTCGCAGTGTAAAAGGAAAACGTATCCATACCCGGGCCATTCACA__75__150__1__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=40	max_min_left_minus=40	max_min_left_plus=40	max_min_right=43	max_min_right_minus=41	max_min_right_plus=43	max_pos_hash_score=172	max_right=87	max_right_minus=87	max_right_plus=87	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.93	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=80	unique_read_sequence=GAAAGGGGGGATTTCCGGTCGCAGTGTAAAAGGAAAACGTATCCATACCCGGGCCATTCACA
JC	874	.	Xen14_138	1231	1	Xen14_166	327	1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=5	flanking_left=130	flanking_right=150	frequency=3.172e-02	junction_possible_overlap_registers=147	key=Xen14_138__1231__1__Xen14_166__326__1__1____130__150__0__0	max_left=130	max_left_minus=130	max_left_plus=130	max_min_left=38	max_min_left_minus=38	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=35	max_pos_hash_score=294	max_right=135	max_right_minus=135	max_right_plus=35	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.02	new_junction_read_count=24	polymorphism_frequency=3.172e-02	pos_hash_score=20	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=1345	side_2_redundant=0	total_non_overlap_reads=23
JC	875	.	Xen14_138	1232	1	Xen14_143	808	1	-2	alignment_overlap=-2	coverage_minus=29	coverage_plus=29	flanking_left=130	flanking_right=150	frequency=9.295e-02	junction_possible_overlap_registers=146	key=Xen14_138__1232__1__Xen14_143__808__1__-2__GT__130__150__0__0	max_left=128	max_left_minus=121	max_left_plus=128	max_min_left=51	max_min_left_minus=50	max_min_left_plus=51	max_min_right=69	max_min_right_minus=68	max_min_right_plus=69	max_pos_hash_score=292	max_right=145	max_right_minus=145	max_right_plus=125	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.14	new_junction_read_count=65	polymorphism_frequency=9.295e-02	pos_hash_score=42	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.47	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=1165	side_2_redundant=0	total_non_overlap_reads=58	unique_read_sequence=GT
JC	876	.	Xen14_138	1232	1	Xen14_166	103	1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=18	flanking_left=130	flanking_right=150	frequency=2.897e-02	junction_possible_overlap_registers=148	key=Xen14_138__1232__1__Xen14_166__103__1__0____130__150__0__0	max_left=130	max_left_minus=113	max_left_plus=130	max_min_left=59	max_min_left_minus=59	max_min_left_plus=49	max_min_right=55	max_min_right_minus=54	max_min_right_plus=55	max_pos_hash_score=296	max_right=145	max_right_minus=137	max_right_plus=145	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.03	new_junction_read_count=43	polymorphism_frequency=2.897e-02	pos_hash_score=32	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=2762	side_2_redundant=0	total_non_overlap_reads=41
JC	877	.	Xen14_138	1232	1	Xen14_202	276	1	0	alignment_overlap=0	coverage_minus=53	coverage_plus=33	flanking_left=130	flanking_right=146	frequency=1.668e-01	junction_possible_overlap_registers=148	key=Xen14_138__1232__1__Xen14_202__276__1__0____130__146__0__0	max_left=130	max_left_minus=129	max_left_plus=130	max_min_left=52	max_min_left_minus=49	max_min_left_plus=52	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=296	max_right=146	max_right_minus=146	max_right_plus=146	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.25	new_junction_read_count=97	polymorphism_frequency=1.668e-01	pos_hash_score=48	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=848	side_2_redundant=0	total_non_overlap_reads=86
JC	878	.	Xen14_138	1232	1	Xen14_206	331	-1	0	alignment_overlap=1	coverage_minus=52	coverage_plus=47	flanking_left=129	flanking_right=150	frequency=2.140e-01	junction_possible_overlap_registers=147	key=Xen14_138__1232__1__Xen14_206__332__-1__1____129__150__0__0	max_left=129	max_left_minus=120	max_left_plus=129	max_min_left=51	max_min_left_minus=51	max_min_left_plus=50	max_min_right=70	max_min_right_minus=70	max_min_right_plus=60	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=142	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.16	new_junction_read_count=99	polymorphism_frequency=2.140e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=607	side_2_redundant=0	total_non_overlap_reads=99
JC	879	.	Xen14_138	1354	-1	Xen14_141	41	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.188e-02	junction_possible_overlap_registers=147	key=Xen14_138__1354__-1__Xen14_141__41__1__-1__C__150__150__0__0	max_left=62	max_left_minus=27	max_left_plus=62	max_min_left=62	max_min_left_minus=27	max_min_left_plus=62	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=145	max_right_minus=121	max_right_plus=145	neg_log10_pos_hash_p_value=17.5	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=1.188e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.35	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=668	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=C
JC	880	.	Xen14_138	1361	-1	Xen14_141	47	1	0	alignment_overlap=46	coverage_minus=35	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=102	key=Xen14_138__1361__-1__Xen14_141__1__1__46____150__150__0__0	max_left=103	max_left_minus=103	max_left_plus=97	max_min_left=47	max_min_left_minus=47	max_min_left_plus=42	max_min_right=49	max_min_right_minus=49	max_min_right_plus=48	max_pos_hash_score=204	max_right=72	max_right_minus=72	max_right_plus=71	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.08	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=46	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=102	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57
JC	881	.	Xen14_139	1349	-1	Xen14_148	954	1	0	alignment_overlap=11	coverage_minus=8	coverage_plus=10	flanking_left=150	flanking_right=36	frequency=1	junction_possible_overlap_registers=137	key=Xen14_139__1349__-1__Xen14_148__943__1__11____150__36__0__1	max_left=137	max_left_minus=137	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=36	max_min_right_minus=36	max_min_right_plus=33	max_pos_hash_score=274	max_right=36	max_right_minus=36	max_right_plus=33	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.23	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	882	.	Xen14_139	1349	-1	Xen14_25	73182	1	-7	alignment_overlap=-7	coverage_minus=7	coverage_plus=12	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=141	key=Xen14_139__1349__-1__Xen14_25__73182__1__-7__CACCGGA__150__59__0__1	max_left=138	max_left_minus=122	max_left_plus=138	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=54	max_pos_hash_score=282	max_right=55	max_right_minus=55	max_right_plus=54	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.20	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19	unique_read_sequence=CACCGGA
JC	883	.	Xen14_14	52666	1	Xen14_14	52694	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=2.684e-02	junction_possible_overlap_registers=146	key=Xen14_14__52666__1__Xen14_14__52692__1__2____150__150__0__0	max_left=66	max_left_minus=66	max_left_plus=39	max_min_left=66	max_min_left_minus=66	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=292	max_right=117	max_right_minus=117	max_right_plus=109	neg_log10_pos_hash_p_value=18.6	new_junction_coverage=0.02	new_junction_read_count=4	polymorphism_frequency=2.684e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=143	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=149	side_2_redundant=0	total_non_overlap_reads=3
JC	884	.	Xen14_14	61330	1	Xen14_14	61364	1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=2.069e-02	junction_possible_overlap_registers=142	key=Xen14_14__61330__1__Xen14_14__61358__1__6____150__150__0__0	max_left=37	max_left_minus=37	max_left_plus=30	max_min_left=37	max_min_left_minus=37	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=112	max_right_minus=112	max_right_plus=82	neg_log10_pos_hash_p_value=18.4	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.069e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=143	side_2_redundant=0	total_non_overlap_reads=3
JC	885	.	Xen14_141	1	1	Xen14_162	1	1	-8	alignment_overlap=-8	coverage_minus=36	coverage_plus=33	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_162__1__1__-8__GCTCTCCT__150__150__0__0	max_left=64	max_left_minus=61	max_left_plus=64	max_min_left=64	max_min_left_minus=61	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=139	max_right_minus=137	max_right_plus=139	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.07	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69	unique_read_sequence=GCTCTCCT
JC	886	.	Xen14_141	1	1	Xen14_39	48485	-1	-7	alignment_overlap=-7	coverage_minus=14	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_39__48485__-1__-7__GCTCTCC__150__150__0__0	max_left=58	max_left_minus=58	max_left_plus=58	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=136	max_right_minus=128	max_right_plus=136	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.04	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34	unique_read_sequence=GCTCTCC
JC	887	.	Xen14_141	1	1	Xen14_52	1	1	-7	alignment_overlap=-7	coverage_minus=24	coverage_plus=38	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_52__1__1__-7__GCTCTCC__150__150__0__0	max_left=64	max_left_minus=64	max_left_plus=63	max_min_left=64	max_min_left_minus=64	max_min_left_plus=63	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=139	max_right_minus=138	max_right_plus=139	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.06	new_junction_read_count=64	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62	unique_read_sequence=GCTCTCC
JC	888	.	Xen14_141	1	1	Xen14_54	28579	-1	-7	alignment_overlap=-7	coverage_minus=39	coverage_plus=29	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_141__1__1__Xen14_54__28579__-1__-7__GCTCTCC__150__150__0__0	max_left=64	max_left_minus=62	max_left_plus=64	max_min_left=64	max_min_left_minus=62	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=142	max_right_minus=140	max_right_plus=142	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.08	new_junction_read_count=81	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=68	unique_read_sequence=GCTCTCC
JC	889	.	Xen14_141	1	1	Xen14_69	14625	-1	-8	alignment_overlap=-8	coverage_minus=10	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_69__14625__-1__-8__GCTCTCCT__150__150__0__0	max_left=62	max_left_minus=55	max_left_plus=62	max_min_left=62	max_min_left_minus=55	max_min_left_plus=62	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=133	max_right_minus=114	max_right_plus=133	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.02	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=GCTCTCCT
JC	890	.	Xen14_141	1	1	Xen14_75	1	1	-8	alignment_overlap=-8	coverage_minus=25	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen14_141__1__1__Xen14_75__1__1__-8__GCTCTCCT__150__150__0__0	max_left=61	max_left_minus=61	max_left_plus=53	max_min_left=61	max_min_left_minus=61	max_min_left_plus=53	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=140	max_right_minus=140	max_right_plus=140	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.05	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=GCTCTCCT
JC	891	.	Xen14_141	1	1	Xen14_94	1	1	-9	alignment_overlap=-9	coverage_minus=10	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=139	key=Xen14_141__1__1__Xen14_94__1__1__-9__GCTCTCCTG__150__150__0__0	max_left=56	max_left_minus=55	max_left_plus=56	max_min_left=56	max_min_left_minus=55	max_min_left_plus=56	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=136	max_right_minus=124	max_right_plus=136	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.02	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20	unique_read_sequence=GCTCTCCTG
JC	892	.	Xen14_142	75	-1	Xen14_159	729	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=3	flanking_left=75	flanking_right=150	frequency=3.182e-01	junction_possible_overlap_registers=148	key=Xen14_142__75__-1__Xen14_159__729__-1__0____75__150__1__0	max_left=75	max_left_minus=72	max_left_plus=75	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=296	max_right=101	max_right_minus=101	max_right_plus=75	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.21	new_junction_read_count=21	polymorphism_frequency=3.182e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=19
JC	893	.	Xen14_143	74	1	Xen14_143	77	-1	-3	alignment_overlap=-3	coverage_minus=286	coverage_plus=301	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=145	key=Xen14_143__74__1__Xen14_143__77__-1__-3__AGC__150__77__0__0	max_left=142	max_left_minus=142	max_left_plus=142	max_min_left=73	max_min_left_minus=73	max_min_left_plus=73	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=290	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.87	new_junction_read_count=679	polymorphism_frequency=8.472e-01	pos_hash_score=139	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.19	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=147	side_2_redundant=0	total_non_overlap_reads=587	unique_read_sequence=AGC
JC	894	.	Xen14_143	77	-1	Xen14_47	36189	1	-22	alignment_overlap=-22	coverage_minus=8	coverage_plus=3	flanking_left=77	flanking_right=86	frequency=1.521e-01	junction_possible_overlap_registers=126	key=Xen14_143__77__-1__Xen14_47__36189__1__-22__GCTCTGCACTGACACGTGCCGA__77__86__0__0	max_left=48	max_left_minus=48	max_left_plus=45	max_min_left=48	max_min_left_minus=48	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=252	max_right=86	max_right_minus=86	max_right_plus=86	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.05	new_junction_read_count=20	polymorphism_frequency=1.521e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=GCTCTGCACTGACACGTGCCGA
JC	895	.	Xen14_143	77	-1	Xen14_90	74	-1	-24	alignment_overlap=-24	coverage_minus=4	coverage_plus=6	flanking_left=77	flanking_right=74	frequency=1.516e-01	junction_possible_overlap_registers=124	key=Xen14_143__77__-1__Xen14_90__74__-1__-24__GCTCTGCACTGACACGTGCCGAAG__77__74__0__1	max_left=55	max_left_minus=52	max_left_plus=55	max_min_left=55	max_min_left_minus=52	max_min_left_plus=55	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=248	max_right=74	max_right_minus=74	max_right_plus=70	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.06	new_junction_read_count=22	polymorphism_frequency=1.516e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=147	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10	unique_read_sequence=GCTCTGCACTGACACGTGCCGAAG
JC	896	.	Xen14_143	808	1	Xen14_94	75	-1	-2	alignment_overlap=-2	coverage_minus=16	coverage_plus=26	flanking_left=150	flanking_right=75	frequency=3.849e-02	junction_possible_overlap_registers=146	key=Xen14_143__808__1__Xen14_94__75__-1__-2__AC__150__75__0__1	max_left=145	max_left_minus=125	max_left_plus=145	max_min_left=71	max_min_left_minus=69	max_min_left_plus=71	max_min_right=72	max_min_right_minus=69	max_min_right_plus=72	max_pos_hash_score=292	max_right=75	max_right_minus=75	max_right_plus=74	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.11	new_junction_read_count=46	polymorphism_frequency=3.849e-02	pos_hash_score=29	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1165	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=42	unique_read_sequence=AC
JC	897	.	Xen14_143	812	-1	Xen14_180	73	-1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=15	flanking_left=150	flanking_right=73	frequency=3.511e-02	junction_possible_overlap_registers=146	key=Xen14_143__812__-1__Xen14_180__75__-1__2____150__73__0__1	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=292	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=12.5	new_junction_coverage=0.09	new_junction_read_count=42	polymorphism_frequency=3.511e-02	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=1170	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	898	.	Xen14_143	812	-1	Xen14_38	48184	1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=6.399e-02	junction_possible_overlap_registers=146	key=Xen14_143__812__-1__Xen14_38__48182__1__2____150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=56	max_min_right_minus=43	max_min_right_plus=56	max_pos_hash_score=292	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.10	new_junction_read_count=44	polymorphism_frequency=6.399e-02	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=1170	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=28
JC	899	.	Xen14_145	1	1	Xen14_183	44	1	0	alignment_overlap=43	coverage_minus=25	coverage_plus=48	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_145__1__1__Xen14_183__1__1__43____150__150__0__0	max_left=71	max_left_minus=71	max_left_plus=69	max_min_left=53	max_min_left_minus=50	max_min_left_plus=53	max_min_right=52	max_min_right_minus=47	max_min_right_plus=52	max_pos_hash_score=210	max_right=106	max_right_minus=104	max_right_plus=106	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.23	new_junction_read_count=73	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73
JC	900	.	Xen14_145	1	1	Xen14_32	55348	-1	0	alignment_overlap=43	coverage_minus=19	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_145__1__1__Xen14_32__55391__-1__43____150__150__0__0	max_left=70	max_left_minus=70	max_left_plus=69	max_min_left=53	max_min_left_minus=53	max_min_left_plus=52	max_min_right=40	max_min_right_minus=40	max_min_right_plus=38	max_pos_hash_score=210	max_right=105	max_right_minus=101	max_right_plus=105	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.17	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	901	.	Xen14_145	1	1	Xen14_54	42	1	0	alignment_overlap=41	coverage_minus=145	coverage_plus=174	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=107	key=Xen14_145__1__1__Xen14_54__1__1__41____150__150__0__0	max_left=108	max_left_minus=108	max_left_plus=108	max_min_left=54	max_min_left_minus=54	max_min_left_plus=52	max_min_right=54	max_min_right_minus=53	max_min_right_plus=54	max_pos_hash_score=214	max_right=107	max_right_minus=106	max_right_plus=107	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.96	new_junction_read_count=330	polymorphism_frequency=1.000e+00	pos_hash_score=121	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=41	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=107	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=319
JC	902	.	Xen14_145	1	1	Xen14_85	11155	-1	0	alignment_overlap=42	coverage_minus=37	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=106	key=Xen14_145__1__1__Xen14_85__11197__-1__42____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=70	max_min_left=53	max_min_left_minus=53	max_min_left_plus=48	max_min_right=54	max_min_right_minus=54	max_min_right_plus=54	max_pos_hash_score=212	max_right=107	max_right_minus=106	max_right_plus=107	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.21	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=42	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=106	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	903	.	Xen14_145	1	1	Xen14_86	3481	-1	-33	alignment_overlap=-33	coverage_minus=18	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=5.868e-01	junction_possible_overlap_registers=115	key=Xen14_145__1__1__Xen14_86__3481__-1__-33__GGAGGCAATTGCAATATCTCTGTGAACTTACAC__150__150__0__0	max_left=105	max_left_minus=103	max_left_plus=105	max_min_left=56	max_min_left_minus=56	max_min_left_plus=52	max_min_right=56	max_min_right_minus=56	max_min_right_plus=40	max_pos_hash_score=230	max_right=115	max_right_minus=114	max_right_plus=115	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.14	new_junction_read_count=48	polymorphism_frequency=5.868e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=87	side_2_redundant=0	total_non_overlap_reads=48	unique_read_sequence=GGAGGCAATTGCAATATCTCTGTGAACTTACAC
JC	904	.	Xen14_145	30	1	Xen14_32	55376	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.300e-02	junction_possible_overlap_registers=147	key=Xen14_145__30__1__Xen14_32__55376__-1__-1__C__150__150__0__0	max_left=118	max_left_minus=118	max_left_plus=89	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=60	max_min_right_minus=31	max_min_right_plus=60	max_pos_hash_score=294	max_right=79	max_right_minus=31	max_right_plus=79	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=3.300e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.22	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=171	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=C
JC	905	.	Xen14_145	30	1	Xen14_54	14	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.247e-02	junction_possible_overlap_registers=147	key=Xen14_145__30__1__Xen14_54__14__1__-1__C__150__150__0__0	max_left=118	max_left_minus=118	max_left_plus=89	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=60	max_min_right_minus=31	max_min_right_plus=60	max_pos_hash_score=294	max_right=104	max_right_minus=31	max_right_plus=104	neg_log10_pos_hash_p_value=17.6	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=3.247e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.22	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=171	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=C
JC	906	.	Xen14_148	989	-1	Xen14_182	431	-1	0	alignment_overlap=47	coverage_minus=22	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=101	key=Xen14_148__989__-1__Xen14_182__478__-1__47____150__150__0__0	max_left=95	max_left_minus=95	max_left_plus=94	max_min_left=45	max_min_left_minus=44	max_min_left_plus=45	max_min_right=51	max_min_right_minus=31	max_min_right_plus=51	max_pos_hash_score=202	max_right=102	max_right_minus=101	max_right_plus=102	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.53	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=47	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=101	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=45
JC	907	.	Xen14_149	1	1	Xen14_82	1	1	0	alignment_overlap=0	coverage_minus=50	coverage_plus=74	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_149__1__1__Xen14_82__1__1__0____150__150__0__0	max_left=149	max_left_minus=139	max_left_plus=149	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=72	max_min_right_minus=72	max_min_right_plus=71	max_pos_hash_score=296	max_right=147	max_right_minus=137	max_right_plus=147	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.98	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=124
JC	908	.	Xen14_149	980	-1	Xen14_82	1	1	0	alignment_overlap=0	coverage_minus=68	coverage_plus=70	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=148	key=Xen14_149__980__-1__Xen14_82__1__1__0____150__150__0__0	max_left=149	max_left_minus=149	max_left_plus=147	max_min_left=71	max_min_left_minus=71	max_min_left_plus=70	max_min_right=75	max_min_right_minus=75	max_min_right_plus=70	max_pos_hash_score=296	max_right=146	max_right_minus=143	max_right_plus=146	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=139	polymorphism_frequency=1.000e+00	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=138
JC	909	.	Xen14_153	29	1	Xen14_153	52	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.377e-03	junction_possible_overlap_registers=147	key=Xen14_153__29__1__Xen14_153__51__1__1____150__150__0__0	max_left=58	max_left_minus=58	max_left_plus=47	max_min_left=58	max_min_left_minus=58	max_min_left_plus=47	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=129	max_right_minus=129	max_right_plus=102	neg_log10_pos_hash_p_value=24.0	new_junction_coverage=0.00	new_junction_read_count=7	polymorphism_frequency=6.377e-03	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=844	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=1343	side_2_redundant=0	total_non_overlap_reads=7
JC	910	.	Xen14_156	328	1	Xen14_156	321	-1	0	alignment_overlap=8	coverage_minus=11	coverage_plus=10	flanking_left=150	flanking_right=150	frequency=1.244e-01	junction_possible_overlap_registers=140	key=Xen14_156__328__1__Xen14_156__329__-1__8____150__150__0__0	max_left=135	max_left_minus=135	max_left_plus=131	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=59	max_pos_hash_score=280	max_right=70	max_right_minus=70	max_right_plus=59	neg_log10_pos_hash_p_value=15.5	new_junction_coverage=0.15	new_junction_read_count=27	polymorphism_frequency=1.244e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=200	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=191	side_2_redundant=0	total_non_overlap_reads=21
JC	911	.	Xen14_156	328	1	Xen14_88	9844	-1	0	alignment_overlap=8	coverage_minus=20	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=2.301e-01	junction_possible_overlap_registers=140	key=Xen14_156__328__1__Xen14_88__9852__-1__8____150__150__0__0	max_left=68	max_left_minus=68	max_left_plus=65	max_min_left=68	max_min_left_minus=68	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=138	max_right_minus=138	max_right_plus=138	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.33	new_junction_read_count=42	polymorphism_frequency=2.301e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=220	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=37
JC	912	.	Xen14_159	729	-1	Xen14_183	325	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=1.603e-01	junction_possible_overlap_registers=147	key=Xen14_159__729__-1__Xen14_183__324__1__1____150__150__0__0	max_left=100	max_left_minus=0	max_left_plus=100	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=294	max_right=69	max_right_minus=0	max_right_plus=69	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.11	new_junction_read_count=14	polymorphism_frequency=1.603e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.31	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=14
JC	913	.	Xen14_159	729	-1	Xen14_60	18896	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=3.822e-01	junction_possible_overlap_registers=148	key=Xen14_159__729__-1__Xen14_60__18896__-1__0____150__150__0__0	max_left=146	max_left_minus=136	max_left_plus=146	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=45	max_min_right_minus=36	max_min_right_plus=45	max_pos_hash_score=296	max_right=139	max_right_minus=138	max_right_plus=139	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.38	new_junction_read_count=43	polymorphism_frequency=3.822e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.31	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=42
JC	914	.	Xen14_16	81841	1	Xen14_43	39550	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=9	flanking_left=100	flanking_right=150	frequency=1.717e-01	junction_possible_overlap_registers=147	key=Xen14_16__81841__1__Xen14_43__39549__1__1____100__150__0__0	max_left=99	max_left_minus=0	max_left_plus=99	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=294	max_right=66	max_right_minus=0	max_right_plus=66	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.15	new_junction_read_count=16	polymorphism_frequency=1.717e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=9
JC	915	.	Xen14_16	81841	1	Xen14_96	5675	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=4	flanking_left=100	flanking_right=150	frequency=9.975e-02	junction_possible_overlap_registers=147	key=Xen14_16__81841__1__Xen14_96__5676__-1__1____100__150__0__0	max_left=21	max_left_minus=21	max_left_plus=19	max_min_left=21	max_min_left_minus=21	max_min_left_plus=19	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=135	max_right_minus=135	max_right_plus=133	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=9.975e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=6
JC	916	.	Xen14_16	81842	1	Xen14_168	629	-1	-15	alignment_overlap=-15	coverage_minus=2	coverage_plus=9	flanking_left=100	flanking_right=150	frequency=2.157e-01	junction_possible_overlap_registers=133	key=Xen14_16__81842__1__Xen14_168__629__-1__-15__AGCTAGGCTGGGGGG__100__150__0__0	max_left=100	max_left_minus=100	max_left_plus=99	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=51	max_min_right_plus=57	max_pos_hash_score=266	max_right=57	max_right_minus=51	max_right_plus=57	neg_log10_pos_hash_p_value=10.7	new_junction_coverage=0.01	new_junction_read_count=11	polymorphism_frequency=2.157e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=AGCTAGGCTGGGGGG
JC	917	.	Xen14_16	81842	1	Xen14_25	77	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=4	flanking_left=100	flanking_right=77	frequency=1.359e-01	junction_possible_overlap_registers=148	key=Xen14_16__81842__1__Xen14_25__77__-1__0____100__77__0__1	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=61	max_pos_hash_score=296	max_right=69	max_right_minus=69	max_right_plus=61	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.16	new_junction_read_count=14	polymorphism_frequency=1.359e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	918	.	Xen14_16	81842	1	Xen14_96	3976	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=8	flanking_left=99	flanking_right=150	frequency=1.138e-01	junction_possible_overlap_registers=147	key=Xen14_16__81842__1__Xen14_96__3975__1__1____99__150__0__0	max_left=99	max_left_minus=86	max_left_plus=99	max_min_left=21	max_min_left_minus=18	max_min_left_plus=21	max_min_right=70	max_min_right_minus=63	max_min_right_plus=70	max_pos_hash_score=294	max_right=141	max_right_minus=131	max_right_plus=141	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.11	new_junction_read_count=13	polymorphism_frequency=1.138e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=10
JC	919	.	Xen14_16	81865	1	Xen14_20	75235	1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=2	flanking_left=77	flanking_right=150	frequency=4.344e-02	junction_possible_overlap_registers=148	key=Xen14_16__81865__1__Xen14_20__75235__1__0____77__150__1__0	max_left=67	max_left_minus=67	max_left_plus=48	max_min_left=67	max_min_left_minus=67	max_min_left_plus=48	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=146	max_right_minus=146	max_right_plus=143	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.42	new_junction_read_count=44	polymorphism_frequency=4.344e-02	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=9.89	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=969	side_2_redundant=0	total_non_overlap_reads=44
JC	920	.	Xen14_160	1	1	Xen14_189	446	-1	0	alignment_overlap=7	coverage_minus=33	coverage_plus=52	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=141	key=Xen14_160__1__1__Xen14_189__453__-1__7____150__150__0__0	max_left=142	max_left_minus=137	max_left_plus=142	max_min_left=71	max_min_left_minus=51	max_min_left_plus=71	max_min_right=71	max_min_right_minus=70	max_min_right_plus=71	max_pos_hash_score=282	max_right=135	max_right_minus=135	max_right_plus=135	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.50	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=85
JC	921	.	Xen14_160	1	1	Xen14_189	447	-1	0	alignment_overlap=6	coverage_minus=53	coverage_plus=74	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=142	key=Xen14_160__1__1__Xen14_189__453__-1__6____150__150__0__0	max_left=141	max_left_minus=139	max_left_plus=141	max_min_left=71	max_min_left_minus=71	max_min_left_plus=66	max_min_right=72	max_min_right_minus=68	max_min_right_plus=72	max_pos_hash_score=284	max_right=143	max_right_minus=142	max_right_plus=143	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.73	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=127
JC	922	.	Xen14_160	780	-1	Xen14_96	5300	-1	-25	alignment_overlap=-25	coverage_minus=34	coverage_plus=51	flanking_left=150	flanking_right=150	frequency=7.424e-01	junction_possible_overlap_registers=123	key=Xen14_160__780__-1__Xen14_96__5300__-1__-25__CTACACGGGAGAAATTCGATGTCGA__150__150__0__0	max_left=124	max_left_minus=115	max_left_plus=124	max_min_left=61	max_min_left_minus=61	max_min_left_plus=60	max_min_right=61	max_min_right_minus=61	max_min_right_plus=59	max_pos_hash_score=246	max_right=118	max_right_minus=118	max_right_plus=115	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.71	new_junction_read_count=91	polymorphism_frequency=7.424e-01	pos_hash_score=63	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=85	unique_read_sequence=CTACACGGGAGAAATTCGATGTCGA
JC	923	.	Xen14_161	1	1	Xen14_178	44	-1	-38	alignment_overlap=-38	coverage_minus=13	coverage_plus=5	flanking_left=150	flanking_right=44	frequency=5.690e-01	junction_possible_overlap_registers=110	key=Xen14_161__1__1__Xen14_178__44__-1__-38__GTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACG__150__44__0__0	max_left=107	max_left_minus=107	max_left_plus=104	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=20	max_pos_hash_score=220	max_right=44	max_right_minus=44	max_right_plus=20	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.32	new_junction_read_count=26	polymorphism_frequency=5.690e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=18	unique_read_sequence=GTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACG
JC	924	.	Xen14_162	691	1	Xen14_170	543	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=6	flanking_left=75	flanking_right=76	frequency=2.470e-01	junction_possible_overlap_registers=147	key=Xen14_162__690__1__Xen14_170__543__1__1____75__76__1__0	max_left=75	max_left_minus=74	max_left_plus=75	max_min_left=73	max_min_left_minus=72	max_min_left_plus=73	max_min_right=70	max_min_right_minus=32	max_min_right_plus=70	max_pos_hash_score=294	max_right=76	max_right_minus=76	max_right_plus=76	neg_log10_pos_hash_p_value=15.4	new_junction_coverage=0.20	new_junction_read_count=29	polymorphism_frequency=2.470e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=9
JC	925	.	Xen14_163	753	-1	Xen14_170	168	-1	0	alignment_overlap=1	coverage_minus=52	coverage_plus=43	flanking_left=150	flanking_right=150	frequency=6.189e-01	junction_possible_overlap_registers=147	key=Xen14_163__753__-1__Xen14_170__169__-1__1____150__150__0__0	max_left=143	max_left_minus=140	max_left_plus=143	max_min_left=72	max_min_left_minus=72	max_min_left_plus=65	max_min_right=74	max_min_right_minus=70	max_min_right_plus=74	max_pos_hash_score=294	max_right=144	max_right_minus=144	max_right_plus=140	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.51	new_junction_read_count=95	polymorphism_frequency=6.189e-01	pos_hash_score=61	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=117	side_2_redundant=0	total_non_overlap_reads=95
JC	926	.	Xen14_163	753	-1	Xen14_193	434	-1	0	alignment_overlap=10	coverage_minus=127	coverage_plus=96	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=138	key=Xen14_163__753__-1__Xen14_193__444__-1__10____150__150__0__0	max_left=139	max_left_minus=139	max_left_plus=138	max_min_left=68	max_min_left_minus=68	max_min_left_plus=67	max_min_right=69	max_min_right_minus=69	max_min_right_plus=68	max_pos_hash_score=276	max_right=139	max_right_minus=137	max_right_plus=139	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.93	new_junction_read_count=223	polymorphism_frequency=1.000e+00	pos_hash_score=123	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=223
JC	927	.	Xen14_166	103	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=4	flanking_left=150	flanking_right=75	frequency=5.760e-03	junction_possible_overlap_registers=148	key=Xen14_166__103__1__Xen14_94__75__-1__0____150__75__0__1	max_left=96	max_left_minus=96	max_left_plus=96	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=67	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=67	neg_log10_pos_hash_p_value=3.1	new_junction_coverage=0.01	new_junction_read_count=16	polymorphism_frequency=5.760e-03	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2762	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	928	.	Xen14_166	326	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=150	flanking_right=75	frequency=3.652e-03	junction_possible_overlap_registers=148	key=Xen14_166__326__1__Xen14_94__75__-1__0____150__75__0__1	max_left=95	max_left_minus=0	max_left_plus=95	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=296	max_right=72	max_right_minus=0	max_right_plus=72	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.00	new_junction_read_count=5	polymorphism_frequency=3.652e-03	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1364	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	929	.	Xen14_166	330	-1	Xen14_180	75	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=8	flanking_left=150	flanking_right=75	frequency=1.534e-02	junction_possible_overlap_registers=148	key=Xen14_166__330__-1__Xen14_180__75__-1__0____150__75__0__1	max_left=99	max_left_minus=99	max_left_plus=94	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=74	max_min_right_minus=72	max_min_right_plus=74	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=74	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.02	new_junction_read_count=20	polymorphism_frequency=1.534e-02	pos_hash_score=13	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1284	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	930	.	Xen14_166	330	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=29	flanking_left=150	flanking_right=150	frequency=1.204e-01	junction_possible_overlap_registers=148	key=Xen14_166__330__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=148	max_left_minus=146	max_left_plus=148	max_min_left=71	max_min_left_minus=71	max_min_left_plus=70	max_min_right=45	max_min_right_minus=45	max_min_right_plus=44	max_pos_hash_score=296	max_right=132	max_right_minus=125	max_right_plus=132	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.07	new_junction_read_count=97	polymorphism_frequency=1.204e-01	pos_hash_score=61	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=1284	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=87
JC	931	.	Xen14_166	670	-1	Xen14_17	79824	-1	-1	alignment_overlap=-1	coverage_minus=7	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=2.969e-02	junction_possible_overlap_registers=147	key=Xen14_166__670__-1__Xen14_17__79824__-1__-1__T__150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=114	max_min_left=52	max_min_left_minus=52	max_min_left_plus=38	max_min_right=71	max_min_right_minus=40	max_min_right_plus=71	max_pos_hash_score=294	max_right=138	max_right_minus=109	max_right_plus=138	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.01	new_junction_read_count=15	polymorphism_frequency=2.969e-02	pos_hash_score=13	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.15	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=375	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.20	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=612	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=T
JC	932	.	Xen14_166	673	-1	Xen14_17	79821	-1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.982e-02	junction_possible_overlap_registers=147	key=Xen14_166__673__-1__Xen14_17__79821__-1__-1__A__150__150__0__0	max_left=140	max_left_minus=140	max_left_plus=130	max_min_left=45	max_min_left_minus=27	max_min_left_plus=45	max_min_right=53	max_min_right_minus=53	max_min_right_plus=19	max_pos_hash_score=294	max_right=145	max_right_minus=138	max_right_plus=145	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.01	new_junction_read_count=10	polymorphism_frequency=1.982e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=333	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.46	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=663	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=A
JC	933	.	Xen14_166	674	-1	Xen14_17	79820	-1	-1	alignment_overlap=-1	coverage_minus=7	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.603e-02	junction_possible_overlap_registers=147	key=Xen14_166__674__-1__Xen14_17__79820__-1__-1__C__150__150__0__0	max_left=80	max_left_minus=80	max_left_plus=47	max_min_left=72	max_min_left_minus=72	max_min_left_plus=47	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=294	max_right=129	max_right_minus=129	max_right_plus=102	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.01	new_junction_read_count=8	polymorphism_frequency=1.603e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=305	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=3.57	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=684	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=C
JC	934	.	Xen14_166	677	-1	Xen14_17	79817	-1	-1	alignment_overlap=-1	coverage_minus=5	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.568e-02	junction_possible_overlap_registers=147	key=Xen14_166__677__-1__Xen14_17__79817__-1__-1__C__150__150__0__0	max_left=116	max_left_minus=116	max_left_plus=44	max_min_left=71	max_min_left_minus=71	max_min_left_plus=44	max_min_right=33	max_min_right_minus=33	max_min_right_plus=0	max_pos_hash_score=294	max_right=141	max_right_minus=112	max_right_plus=141	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.01	new_junction_read_count=8	polymorphism_frequency=1.568e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=244	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=4.01	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=767	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=C
JC	935	.	Xen14_166	681	-1	Xen14_17	79813	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.111e-02	junction_possible_overlap_registers=147	key=Xen14_166__681__-1__Xen14_17__79813__-1__-1__T__150__150__0__0	max_left=138	max_left_minus=138	max_left_plus=124	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=55	max_min_right_minus=25	max_min_right_plus=55	max_pos_hash_score=294	max_right=84	max_right_minus=25	max_right_plus=84	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.00	new_junction_read_count=6	polymorphism_frequency=1.111e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=5.14	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=984	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=T
JC	936	.	Xen14_166	685	-1	Xen14_17	79810	-1	0	alignment_overlap=26	coverage_minus=1683	coverage_plus=1327	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_166__685__-1__Xen14_17__79836__-1__26____150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=61	max_min_left_minus=61	max_min_left_plus=61	max_min_right=62	max_min_right_minus=62	max_min_right_plus=62	max_pos_hash_score=244	max_right=123	max_right_minus=123	max_right_plus=123	neg_log10_pos_hash_p_value=-0.0	new_junction_coverage=2.82	new_junction_read_count=3120	polymorphism_frequency=9.593e-01	pos_hash_score=237	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.68	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=265	side_2_redundant=0	total_non_overlap_reads=3010
JC	937	.	Xen14_168	1	1	Xen14_21	25	1	0	alignment_overlap=24	coverage_minus=21	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_168__1__1__Xen14_21__1__1__24____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=72	max_min_left=59	max_min_left_minus=59	max_min_left_plus=39	max_min_right=57	max_min_right_minus=57	max_min_right_plus=54	max_pos_hash_score=248	max_right=120	max_right_minus=120	max_right_plus=119	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.05	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=24	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=124	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	938	.	Xen14_168	1	1	Xen14_31	27	1	0	alignment_overlap=26	coverage_minus=204	coverage_plus=251	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_168__1__1__Xen14_31__1__1__26____150__150__0__0	max_left=123	max_left_minus=123	max_left_plus=123	max_min_left=61	max_min_left_minus=58	max_min_left_plus=61	max_min_right=62	max_min_right_minus=61	max_min_right_plus=62	max_pos_hash_score=244	max_right=122	max_right_minus=122	max_right_plus=119	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.59	new_junction_read_count=460	polymorphism_frequency=1.000e+00	pos_hash_score=146	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=455
JC	939	.	Xen14_168	1	1	Xen14_46	40324	-1	0	alignment_overlap=27	coverage_minus=44	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=121	key=Xen14_168__1__1__Xen14_46__40351__-1__27____150__150__0__0	max_left=69	max_left_minus=67	max_left_plus=69	max_min_left=57	max_min_left_minus=55	max_min_left_plus=57	max_min_right=59	max_min_right_minus=58	max_min_right_plus=59	max_pos_hash_score=242	max_right=122	max_right_minus=122	max_right_plus=118	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.08	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	940	.	Xen14_168	1	1	Xen14_67	28	1	0	alignment_overlap=27	coverage_minus=20	coverage_plus=26	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=121	key=Xen14_168__1__1__Xen14_67__1__1__27____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=67	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=61	max_min_right_minus=61	max_min_right_plus=61	max_pos_hash_score=242	max_right=121	max_right_minus=121	max_right_plus=119	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.06	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=121	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	941	.	Xen14_168	1	1	Xen14_68	27	1	0	alignment_overlap=26	coverage_minus=43	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=122	key=Xen14_168__1__1__Xen14_68__1__1__26____150__150__0__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=60	max_min_left_minus=60	max_min_left_plus=60	max_min_right=62	max_min_right_minus=62	max_min_right_plus=61	max_pos_hash_score=244	max_right=123	max_right_minus=123	max_right_plus=122	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.10	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=122	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75
JC	942	.	Xen14_168	1	1	Xen14_80	26	1	0	alignment_overlap=25	coverage_minus=30	coverage_plus=40	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=123	key=Xen14_168__1__1__Xen14_80__1__1__25____150__150__0__0	max_left=72	max_left_minus=71	max_left_plus=72	max_min_left=62	max_min_left_minus=58	max_min_left_plus=62	max_min_right=58	max_min_right_minus=56	max_min_right_plus=58	max_pos_hash_score=246	max_right=124	max_right_minus=119	max_right_plus=124	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.09	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=25	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=123	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=70
JC	943	.	Xen14_168	12	1	Xen14_46	40334	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=7.566e-02	junction_possible_overlap_registers=147	key=Xen14_168__12__1__Xen14_46__40334__-1__-1__C__150__150__0__0	max_left=137	max_left_minus=133	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=12	max_pos_hash_score=294	max_right=62	max_right_minus=62	max_right_plus=12	neg_log10_pos_hash_p_value=12.9	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=7.566e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=C
JC	944	.	Xen14_168	12	1	Xen14_80	16	1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=7.399e-02	junction_possible_overlap_registers=147	key=Xen14_168__12__1__Xen14_80__16__1__-1__C__150__150__0__0	max_left=137	max_left_minus=133	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=12	max_pos_hash_score=294	max_right=62	max_right_minus=62	max_right_plus=12	neg_log10_pos_hash_p_value=12.7	new_junction_coverage=0.01	new_junction_read_count=5	polymorphism_frequency=7.399e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=C
JC	945	.	Xen14_168	296	1	Xen14_190	374	1	0	alignment_overlap=0	coverage_minus=51	coverage_plus=39	flanking_left=150	flanking_right=75	frequency=4.986e-02	junction_possible_overlap_registers=148	key=Xen14_168__296__1__Xen14_190__374__1__0____150__75__0__1	max_left=146	max_left_minus=143	max_left_plus=146	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=12.2	new_junction_coverage=0.12	new_junction_read_count=106	polymorphism_frequency=4.986e-02	pos_hash_score=54	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2020	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=90
JC	946	.	Xen14_168	298	-1	Xen14_47	36191	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=3	flanking_left=150	flanking_right=84	frequency=1.642e-02	junction_possible_overlap_registers=148	key=Xen14_168__298__-1__Xen14_47__36191__1__0____150__84__0__0	max_left=70	max_left_minus=68	max_left_plus=70	max_min_left=70	max_min_left_minus=68	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=13.9	new_junction_coverage=0.02	new_junction_read_count=18	polymorphism_frequency=1.642e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2043	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=8
JC	947	.	Xen14_168	298	-1	Xen14_94	7510	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=39	flanking_left=150	flanking_right=75	frequency=3.949e-02	junction_possible_overlap_registers=148	key=Xen14_168__298__-1__Xen14_94__7510__1__0____150__75__0__1	max_left=147	max_left_minus=140	max_left_plus=147	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=70	max_pos_hash_score=296	max_right=75	max_right_minus=75	max_right_plus=70	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.10	new_junction_read_count=84	polymorphism_frequency=3.949e-02	pos_hash_score=57	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=2043	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
JC	948	.	Xen14_168	605	-1	Xen14_22	74442	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=2.796e-02	junction_possible_overlap_registers=147	key=Xen14_168__605__-1__Xen14_22__74442__-1__-1__A__150__150__0__0	max_left=96	max_left_minus=96	max_left_plus=60	max_min_left=60	max_min_left_minus=0	max_min_left_plus=60	max_min_right=53	max_min_right_minus=53	max_min_right_plus=0	max_pos_hash_score=294	max_right=141	max_right_minus=53	max_right_plus=141	neg_log10_pos_hash_p_value=20.4	new_junction_coverage=0.00	new_junction_read_count=3	polymorphism_frequency=2.796e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=202	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=A
JC	949	.	Xen14_168	607	-1	Xen14_5	20	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=4.549e-02	junction_possible_overlap_registers=147	key=Xen14_168__607__-1__Xen14_5__20__1__-1__C__150__150__0__0	max_left=132	max_left_minus=132	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=294	max_right=68	max_right_minus=68	max_right_plus=0	neg_log10_pos_hash_p_value=12.0	new_junction_coverage=0.00	new_junction_read_count=4	polymorphism_frequency=4.549e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=165	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=C
JC	950	.	Xen14_168	629	-1	Xen14_2	63	1	0	alignment_overlap=62	coverage_minus=8	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen14_168__629__-1__Xen14_2__1__1__62____150__150__0__0	max_left=49	max_left_minus=45	max_left_plus=49	max_min_left=40	max_min_left_minus=40	max_min_left_plus=19	max_min_right=44	max_min_right_minus=44	max_min_right_plus=39	max_pos_hash_score=172	max_right=83	max_right_minus=83	max_right_plus=69	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.02	new_junction_read_count=11	polymorphism_frequency=1.000e+00	pos_hash_score=7	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=62	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	951	.	Xen14_168	629	-1	Xen14_22	74419	-1	0	alignment_overlap=38	coverage_minus=133	coverage_plus=168	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=110	key=Xen14_168__629__-1__Xen14_22__74457__-1__38____150__150__0__0	max_left=111	max_left_minus=110	max_left_plus=111	max_min_left=55	max_min_left_minus=54	max_min_left_plus=55	max_min_right=55	max_min_right_minus=55	max_min_right_plus=53	max_pos_hash_score=220	max_right=107	max_right_minus=105	max_right_plus=107	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.43	new_junction_read_count=304	polymorphism_frequency=1.000e+00	pos_hash_score=111	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=301
JC	952	.	Xen14_168	629	-1	Xen14_29	59	-1	-15	alignment_overlap=-15	coverage_minus=23	coverage_plus=42	flanking_left=150	flanking_right=59	frequency=1	junction_possible_overlap_registers=133	key=Xen14_168__629__-1__Xen14_29__59__-1__-15__ACCCCCAGCCTAGCT__150__59__0__0	max_left=130	max_left_minus=129	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=57	max_pos_hash_score=266	max_right=59	max_right_minus=59	max_right_plus=57	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.09	new_junction_read_count=67	polymorphism_frequency=8.714e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=ACCCCCAGCCTAGCT
JC	953	.	Xen14_168	629	-1	Xen14_5	41	1	0	alignment_overlap=40	coverage_minus=22	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=108	key=Xen14_168__629__-1__Xen14_5__1__1__40____150__150__0__0	max_left=66	max_left_minus=66	max_left_plus=60	max_min_left=54	max_min_left_minus=48	max_min_left_plus=54	max_min_right=53	max_min_right_minus=53	max_min_right_plus=51	max_pos_hash_score=216	max_right=109	max_right_minus=106	max_right_plus=109	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.06	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=40	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=108	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	954	.	Xen14_168	629	-1	Xen14_58	39	1	0	alignment_overlap=38	coverage_minus=34	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=110	key=Xen14_168__629__-1__Xen14_58__1__1__38____150__150__0__0	max_left=72	max_left_minus=68	max_left_plus=72	max_min_left=54	max_min_left_minus=54	max_min_left_plus=52	max_min_right=56	max_min_right_minus=56	max_min_right_plus=40	max_pos_hash_score=220	max_right=111	max_right_minus=105	max_right_plus=111	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.10	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=38	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=110	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=65
JC	955	.	Xen14_168	629	-1	Xen14_62	44	1	0	alignment_overlap=43	coverage_minus=16	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_168__629__-1__Xen14_62__1__1__43____150__150__0__0	max_left=70	max_left_minus=70	max_left_plus=40	max_min_left=53	max_min_left_minus=53	max_min_left_plus=40	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=210	max_right=99	max_right_minus=96	max_right_plus=99	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.04	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	956	.	Xen14_168	629	-1	Xen14_68	16325	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=11	flanking_left=150	flanking_right=58	frequency=1	junction_possible_overlap_registers=147	key=Xen14_168__629__-1__Xen14_68__16324__1__1____150__58__0__1	max_left=134	max_left_minus=131	max_left_plus=134	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=56	max_min_right_minus=35	max_min_right_plus=56	max_pos_hash_score=294	max_right=56	max_right_minus=35	max_right_plus=56	neg_log10_pos_hash_p_value=20.6	new_junction_coverage=0.01	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	957	.	Xen14_168	629	-1	Xen14_68	16345	-1	0	alignment_overlap=37	coverage_minus=32	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=111	key=Xen14_168__629__-1__Xen14_68__16382__-1__37____150__150__0__0	max_left=72	max_left_minus=67	max_left_plus=72	max_min_left=54	max_min_left_minus=52	max_min_left_plus=54	max_min_right=54	max_min_right_minus=54	max_min_right_plus=47	max_pos_hash_score=222	max_right=112	max_right_minus=112	max_right_plus=105	neg_log10_pos_hash_p_value=3.7	new_junction_coverage=0.10	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=37	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=111	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	958	.	Xen14_168	629	-1	Xen14_78	12516	-1	0	alignment_overlap=43	coverage_minus=35	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=105	key=Xen14_168__629__-1__Xen14_78__12559__-1__43____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=69	max_min_left=53	max_min_left_minus=53	max_min_left_plus=53	max_min_right=49	max_min_right_minus=48	max_min_right_plus=49	max_pos_hash_score=210	max_right=106	max_right_minus=103	max_right_plus=106	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.09	new_junction_read_count=62	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=43	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=105	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62
JC	959	.	Xen14_169	1	1	Xen14_193	444	-1	-24	alignment_overlap=-24	coverage_minus=34	coverage_plus=28	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_169__1__1__Xen14_193__444__-1__-24__AATACGGTTCTGACGAGCCGCTTA__150__150__0__0	max_left=114	max_left_minus=113	max_left_plus=114	max_min_left=62	max_min_left_minus=62	max_min_left_plus=59	max_min_right=63	max_min_right_minus=63	max_min_right_plus=62	max_pos_hash_score=248	max_right=123	max_right_minus=116	max_right_plus=123	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.35	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=62	unique_read_sequence=AATACGGTTCTGACGAGCCGCTTA
JC	960	.	Xen14_169	1	1	Xen14_82	11932	-1	0	alignment_overlap=51	coverage_minus=49	coverage_plus=40	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=97	key=Xen14_169__1__1__Xen14_82__11983__-1__51____150__150__0__0	max_left=97	max_left_minus=97	max_left_plus=97	max_min_left=48	max_min_left_minus=44	max_min_left_plus=48	max_min_right=49	max_min_right_minus=46	max_min_right_plus=49	max_pos_hash_score=194	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.89	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=51	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=97	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=89
JC	961	.	Xen14_17	79832	1	Xen14_17	79836	-1	-7	alignment_overlap=-7	coverage_minus=2	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.109e-02	junction_possible_overlap_registers=141	key=Xen14_17__79832__1__Xen14_17__79836__-1__-7__AAGGCGT__150__150__0__0	max_left=46	max_left_minus=46	max_left_plus=44	max_min_left=46	max_min_left_minus=46	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=115	max_right_minus=97	max_right_plus=115	neg_log10_pos_hash_p_value=18.6	new_junction_coverage=0.02	new_junction_read_count=4	polymorphism_frequency=1.109e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.26	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=432	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.66	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=317	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=AAGGCGT
JC	962	.	Xen14_171	1	1	Xen14_64	2419	-1	0	alignment_overlap=1	coverage_minus=30	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=6.231e-01	junction_possible_overlap_registers=147	key=Xen14_171__1__1__Xen14_64__2420__-1__1____150__150__0__0	max_left=147	max_left_minus=147	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=61	max_min_right_plus=69	max_pos_hash_score=294	max_right=69	max_right_minus=61	max_right_plus=69	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.62	new_junction_read_count=62	polymorphism_frequency=6.231e-01	pos_hash_score=39	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=57
JC	963	.	Xen14_172	1	1	Xen14_64	2419	-1	0	alignment_overlap=1	coverage_minus=26	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=5.399e-01	junction_possible_overlap_registers=147	key=Xen14_172__1__1__Xen14_64__2420__-1__1____150__150__0__0	max_left=145	max_left_minus=136	max_left_plus=145	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=54	max_pos_hash_score=294	max_right=63	max_right_minus=63	max_right_plus=54	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.74	new_junction_read_count=44	polymorphism_frequency=5.399e-01	pos_hash_score=29	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=43
JC	964	.	Xen14_174	1	1	Xen14_96	5121	1	-29	alignment_overlap=-29	coverage_minus=27	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=6.928e-01	junction_possible_overlap_registers=119	key=Xen14_174__1__1__Xen14_96__5121__1__-29__TTGCCCGGCCAGTACGATGACGTAGTACC__150__150__0__0	max_left=120	max_left_minus=120	max_left_plus=114	max_min_left=53	max_min_left_minus=49	max_min_left_plus=53	max_min_right=53	max_min_right_minus=53	max_min_right_plus=45	max_pos_hash_score=238	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.64	new_junction_read_count=68	polymorphism_frequency=6.928e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=TTGCCCGGCCAGTACGATGACGTAGTACC
JC	965	.	Xen14_174	35	-1	Xen14_96	5128	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=10	flanking_left=35	flanking_right=150	frequency=2.289e-01	junction_possible_overlap_registers=148	key=Xen14_174__35__-1__Xen14_96__5128__-1__0____35__150__1__0	max_left=35	max_left_minus=16	max_left_plus=35	max_min_left=35	max_min_left_minus=16	max_min_left_plus=35	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=149	max_right_plus=149	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.14	new_junction_read_count=19	polymorphism_frequency=2.289e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.51	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=14
JC	966	.	Xen14_175	92	-1	Xen14_204	1	1	-39	alignment_overlap=-39	coverage_minus=13	coverage_plus=11	flanking_left=92	flanking_right=150	frequency=4.095e-01	junction_possible_overlap_registers=109	key=Xen14_175__92__-1__Xen14_204__1__1__-39__CGCGGTGGCCAGTTTTTGTTGACCACTTCACCCAGCAAT__92__150__0__0	max_left=18	max_left_minus=18	max_left_plus=17	max_min_left=18	max_min_left_minus=18	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=107	max_right_minus=106	max_right_plus=107	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.30	new_junction_read_count=24	polymorphism_frequency=4.095e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=CGCGGTGGCCAGTTTTTGTTGACCACTTCACCCAGCAAT
JC	967	.	Xen14_175	123	-1	Xen14_204	1	1	-8	alignment_overlap=-8	coverage_minus=4	coverage_plus=4	flanking_left=123	flanking_right=150	frequency=1.333e-01	junction_possible_overlap_registers=140	key=Xen14_175__123__-1__Xen14_204__1__1__-8__CCAGCAAT__123__150__0__0	max_left=3	max_left_minus=2	max_left_plus=3	max_min_left=3	max_min_left_minus=2	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=280	max_right=141	max_right_minus=141	max_right_plus=139	neg_log10_pos_hash_p_value=17.2	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=1.333e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=CCAGCAAT
JC	968	.	Xen14_175	560	-1	Xen14_183	245	1	0	alignment_overlap=10	coverage_minus=25	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=4.545e-01	junction_possible_overlap_registers=138	key=Xen14_175__560__-1__Xen14_183__235__1__10____150__150__0__0	max_left=136	max_left_minus=136	max_left_plus=136	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=51	max_min_right_plus=32	max_pos_hash_score=276	max_right=51	max_right_minus=51	max_right_plus=32	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.45	new_junction_read_count=45	polymorphism_frequency=4.545e-01	pos_hash_score=27	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=36
JC	969	.	Xen14_177	1	1	Xen14_96	5308	-1	-24	alignment_overlap=-24	coverage_minus=72	coverage_plus=54	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=124	key=Xen14_177__1__1__Xen14_96__5308__-1__-24__TATTTTTCAGATGGTGGAAAGAAC__150__150__0__0	max_left=125	max_left_minus=125	max_left_plus=124	max_min_left=62	max_min_left_minus=62	max_min_left_plus=59	max_min_right=63	max_min_right_minus=63	max_min_right_plus=63	max_pos_hash_score=248	max_right=93	max_right_minus=93	max_right_plus=93	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.07	new_junction_read_count=139	polymorphism_frequency=8.278e-01	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=126	unique_read_sequence=TATTTTTCAGATGGTGGAAAGAAC
JC	970	.	Xen14_177	549	-1	Xen14_96	5541	1	-57	alignment_overlap=-57	coverage_minus=31	coverage_plus=51	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=91	key=Xen14_177__549__-1__Xen14_96__5541__1__-57__GCTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC__150__150__0__0	max_left=92	max_left_minus=91	max_left_plus=92	max_min_left=46	max_min_left_minus=46	max_min_left_plus=45	max_min_right=46	max_min_right_minus=44	max_min_right_plus=46	max_pos_hash_score=182	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=0.86	new_junction_read_count=82	polymorphism_frequency=8.239e-01	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=82	unique_read_sequence=GCTAAAACAACAAAGTCCATAAGGAGTTTACTCACATCTGACAAAATCAATATAAAC
JC	971	.	Xen14_180	75	-1	Xen14_202	280	-1	0	alignment_overlap=0	coverage_minus=32	coverage_plus=46	flanking_left=75	flanking_right=150	frequency=8.811e-02	junction_possible_overlap_registers=148	key=Xen14_180__75__-1__Xen14_202__280__-1__0____75__150__1__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=74	max_min_left_minus=74	max_min_left_plus=67	max_min_right=75	max_min_right_minus=75	max_min_right_plus=75	max_pos_hash_score=296	max_right=146	max_right_minus=146	max_right_plus=138	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.22	new_junction_read_count=83	polymorphism_frequency=8.811e-02	pos_hash_score=46	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=859	side_2_redundant=0	total_non_overlap_reads=78
JC	972	.	Xen14_180	75	-1	Xen14_206	327	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=3	flanking_left=75	flanking_right=77	frequency=2.651e-02	junction_possible_overlap_registers=148	key=Xen14_180__75__-1__Xen14_206__327__1__0____75__77__1__0	max_left=75	max_left_minus=70	max_left_plus=75	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=74	max_min_right_minus=0	max_min_right_plus=74	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=74	neg_log10_pos_hash_p_value=23.5	new_junction_coverage=0.03	new_junction_read_count=18	polymorphism_frequency=2.651e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=661	side_2_redundant=0	total_non_overlap_reads=6
JC	973	.	Xen14_180	75	-1	Xen14_62	81	-1	-39	alignment_overlap=-39	coverage_minus=8	coverage_plus=0	flanking_left=75	flanking_right=81	frequency=5.328e-01	junction_possible_overlap_registers=109	key=Xen14_180__75__-1__Xen14_62__81__-1__-39__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC__75__81__1__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=81	max_right_minus=81	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.32	new_junction_read_count=21	polymorphism_frequency=5.328e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC
JC	974	.	Xen14_180	75	-1	Xen14_68	16309	1	-40	alignment_overlap=-40	coverage_minus=16	coverage_plus=31	flanking_left=75	flanking_right=74	frequency=NA	junction_possible_overlap_registers=108	key=Xen14_180__75__-1__Xen14_68__16309__1__-40__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC__75__74__1__1	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=53	max_min_left_minus=49	max_min_left_plus=53	max_min_right=55	max_min_right_minus=55	max_min_right_plus=53	max_pos_hash_score=216	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.46	new_junction_read_count=49	polymorphism_frequency=NA	pos_hash_score=28	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=47	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC
JC	975	.	Xen14_180	75	-1	Xen14_78	12478	1	-38	alignment_overlap=-38	coverage_minus=8	coverage_plus=0	flanking_left=75	flanking_right=82	frequency=2.473e-01	junction_possible_overlap_registers=110	key=Xen14_180__75__-1__Xen14_78__12478__1__-38__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG__75__82__1__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=220	max_right=82	max_right_minus=82	max_right_plus=0	neg_log10_pos_hash_p_value=17.0	new_junction_coverage=0.18	new_junction_read_count=21	polymorphism_frequency=2.473e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG
JC	976	.	Xen14_180	526	-1	Xen14_197	402	-1	0	alignment_overlap=31	coverage_minus=54	coverage_plus=36	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_180__526__-1__Xen14_197__433__-1__31____150__150__0__0	max_left=112	max_left_minus=112	max_left_plus=110	max_min_left=59	max_min_left_minus=59	max_min_left_plus=57	max_min_right=59	max_min_right_minus=59	max_min_right_plus=59	max_pos_hash_score=234	max_right=114	max_right_minus=109	max_right_plus=114	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.15	new_junction_read_count=90	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	977	.	Xen14_183	235	1	Xen14_98	11	1	0	alignment_overlap=10	coverage_minus=10	coverage_plus=44	flanking_left=150	flanking_right=150	frequency=5.325e-01	junction_possible_overlap_registers=138	key=Xen14_183__235__1__Xen14_98__1__1__10____150__150__0__0	max_left=43	max_left_minus=38	max_left_plus=43	max_min_left=43	max_min_left_minus=38	max_min_left_plus=43	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=138	max_right_minus=135	max_right_plus=138	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.45	new_junction_read_count=60	polymorphism_frequency=5.325e-01	pos_hash_score=32	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=54
JC	978	.	Xen14_183	477	-1	Xen14_75	12904	1	-11	alignment_overlap=-11	coverage_minus=30	coverage_plus=30	flanking_left=150	flanking_right=149	frequency=5.082e-01	junction_possible_overlap_registers=137	key=Xen14_183__477__-1__Xen14_75__12904__1__-11__GGTGCCGATCA__150__149__0__0	max_left=138	max_left_minus=130	max_left_plus=138	max_min_left=51	max_min_left_minus=51	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=53	max_pos_hash_score=274	max_right=88	max_right_minus=88	max_right_plus=53	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.60	new_junction_read_count=66	polymorphism_frequency=5.082e-01	pos_hash_score=36	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=138	side_2_redundant=0	total_non_overlap_reads=60	unique_read_sequence=GGTGCCGATCA
JC	979	.	Xen14_184	473	-1	Xen14_34	53052	-1	0	alignment_overlap=32	coverage_minus=121	coverage_plus=209	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_34__53084__-1__32____150__150__0__0	max_left=116	max_left_minus=113	max_left_plus=116	max_min_left=58	max_min_left_minus=50	max_min_left_plus=58	max_min_right=58	max_min_right_minus=55	max_min_right_plus=58	max_pos_hash_score=232	max_right=113	max_right_minus=113	max_right_plus=111	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.70	new_junction_read_count=332	polymorphism_frequency=1.000e+00	pos_hash_score=112	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=330
JC	980	.	Xen14_184	473	-1	Xen14_58	24540	-1	0	alignment_overlap=32	coverage_minus=30	coverage_plus=45	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_58__24572__-1__32____150__150__0__0	max_left=72	max_left_minus=72	max_left_plus=72	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=59	max_min_right_minus=58	max_min_right_plus=59	max_pos_hash_score=232	max_right=116	max_right_minus=116	max_right_plus=114	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.16	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=75
JC	981	.	Xen14_184	473	-1	Xen14_60	32	1	0	alignment_overlap=31	coverage_minus=13	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=117	key=Xen14_184__473__-1__Xen14_60__1__1__31____150__150__0__0	max_left=71	max_left_minus=69	max_left_plus=71	max_min_left=59	max_min_left_minus=57	max_min_left_plus=59	max_min_right=58	max_min_right_minus=58	max_min_right_plus=58	max_pos_hash_score=234	max_right=114	max_right_minus=114	max_right_plus=109	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.10	new_junction_read_count=44	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=117	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	982	.	Xen14_184	473	-1	Xen14_76	33	1	0	alignment_overlap=32	coverage_minus=83	coverage_plus=85	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=116	key=Xen14_184__473__-1__Xen14_76__1__1__32____150__150__0__0	max_left=116	max_left_minus=115	max_left_plus=116	max_min_left=58	max_min_left_minus=53	max_min_left_plus=58	max_min_right=59	max_min_right_minus=55	max_min_right_plus=59	max_pos_hash_score=232	max_right=117	max_right_minus=108	max_right_plus=117	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.38	new_junction_read_count=175	polymorphism_frequency=1.000e+00	pos_hash_score=84	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=168
JC	983	.	Xen14_188	458	-1	Xen14_45	36472	-1	-29	alignment_overlap=-29	coverage_minus=37	coverage_plus=38	flanking_left=150	flanking_right=150	frequency=5.852e-01	junction_possible_overlap_registers=119	key=Xen14_188__458__-1__Xen14_45__36472__-1__-29__CAGCTTCTGCAACAGAACCGGTGAGTCTT__150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=109	max_min_left=59	max_min_left_minus=59	max_min_left_plus=53	max_min_right=57	max_min_right_minus=55	max_min_right_plus=57	max_pos_hash_score=238	max_right=118	max_right_minus=118	max_right_plus=105	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.42	new_junction_read_count=76	polymorphism_frequency=5.852e-01	pos_hash_score=49	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=75	unique_read_sequence=CAGCTTCTGCAACAGAACCGGTGAGTCTT
JC	984	.	Xen14_188	458	-1	Xen14_45	36472	-1	-29	alignment_overlap=-29	coverage_minus=35	coverage_plus=53	flanking_left=150	flanking_right=150	frequency=6.203e-01	junction_possible_overlap_registers=119	key=Xen14_188__458__-1__Xen14_45__36472__-1__-29__TAGCTTCTGCAACAGAACCGGTGAGTCTT__150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=59	max_min_left_minus=59	max_min_left_plus=53	max_min_right=60	max_min_right_minus=60	max_min_right_plus=56	max_pos_hash_score=238	max_right=119	max_right_minus=101	max_right_plus=119	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.49	new_junction_read_count=88	polymorphism_frequency=6.203e-01	pos_hash_score=63	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=88	unique_read_sequence=TAGCTTCTGCAACAGAACCGGTGAGTCTT
JC	985	.	Xen14_19	62853	1	Xen14_19	62877	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.157e-02	junction_possible_overlap_registers=139	key=Xen14_19__62853__1__Xen14_19__62868__1__9____150__150__0__0	max_left=52	max_left_minus=52	max_left_plus=33	max_min_left=52	max_min_left_minus=52	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=118	max_right_minus=118	max_right_plus=61	neg_log10_pos_hash_p_value=15.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=3.157e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	986	.	Xen14_19	76848	1	Xen14_54	28019	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=2.642e-01	junction_possible_overlap_registers=148	key=Xen14_19__76848__1__Xen14_54__28019__-1__0____150__150__0__0	max_left=148	max_left_minus=146	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=49	max_min_right_plus=51	max_pos_hash_score=296	max_right=51	max_right_minus=49	max_right_plus=51	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.31	new_junction_read_count=51	polymorphism_frequency=2.642e-01	pos_hash_score=31	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=157	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=49
JC	987	.	Xen14_19	76931	-1	Xen14_54	28019	-1	-63	alignment_overlap=-63	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=3.398e-02	junction_possible_overlap_registers=85	key=Xen14_19__76931__-1__Xen14_54__28019__-1__-63__AGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACA__150__150__0__0	max_left=36	max_left_minus=36	max_left_plus=36	max_min_left=36	max_min_left_minus=36	max_min_left_plus=36	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=170	max_right=52	max_right_minus=52	max_right_plus=51	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.398e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.82	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=269	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=AGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACA
JC	988	.	Xen14_191	436	-1	Xen14_202	11	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=4.026e-02	junction_possible_overlap_registers=147	key=Xen14_191__436__-1__Xen14_202__11__1__-1__G__150__150__0__0	max_left=132	max_left_minus=132	max_left_plus=67	max_min_left=67	max_min_left_minus=0	max_min_left_plus=67	max_min_right=72	max_min_right_minus=72	max_min_right_plus=0	max_pos_hash_score=294	max_right=139	max_right_minus=72	max_right_plus=139	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.01	new_junction_read_count=6	polymorphism_frequency=4.026e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=145	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.22	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=143	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=G
JC	989	.	Xen14_191	438	-1	Xen14_202	13	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.993e-02	junction_possible_overlap_registers=147	key=Xen14_191__438__-1__Xen14_202__13__1__-1__G__150__150__0__0	max_left=90	max_left_minus=0	max_left_plus=90	max_min_left=44	max_min_left_minus=0	max_min_left_plus=44	max_min_right=59	max_min_right_minus=0	max_min_right_plus=59	max_pos_hash_score=294	max_right=137	max_right_minus=0	max_right_plus=137	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.01	new_junction_read_count=3	polymorphism_frequency=1.993e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.34	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=141	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.24	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=156	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=G
JC	990	.	Xen14_191	447	-1	Xen14_202	21	1	0	alignment_overlap=20	coverage_minus=306	coverage_plus=379	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=128	key=Xen14_191__447__-1__Xen14_202__1__1__20____150__150__0__0	max_left=129	max_left_minus=129	max_left_plus=129	max_min_left=63	max_min_left_minus=63	max_min_left_plus=63	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=256	max_right=129	max_right_minus=129	max_right_plus=129	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=1.64	new_junction_read_count=755	polymorphism_frequency=1.000e+00	pos_hash_score=189	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=20	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=128	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=685
JC	991	.	Xen14_192	1	1	Xen14_198	431	-1	-1	alignment_overlap=-1	coverage_minus=30	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_192__1__1__Xen14_198__431__-1__-1__A__150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=139	max_min_left=71	max_min_left_minus=71	max_min_left_plus=64	max_min_right=67	max_min_right_minus=67	max_min_right_plus=64	max_pos_hash_score=294	max_right=146	max_right_minus=146	max_right_plus=137	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.50	new_junction_read_count=52	polymorphism_frequency=1.000e+00	pos_hash_score=39	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=A
JC	992	.	Xen14_192	1	1	Xen14_198	431	-1	-1	alignment_overlap=-1	coverage_minus=26	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_192__1__1__Xen14_198__431__-1__-1__G__150__150__0__0	max_left=144	max_left_minus=143	max_left_plus=144	max_min_left=72	max_min_left_minus=71	max_min_left_plus=72	max_min_right=74	max_min_right_minus=62	max_min_right_plus=74	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=142	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.54	new_junction_read_count=56	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=56	unique_read_sequence=G
JC	993	.	Xen14_194	305	-1	Xen14_25	73236	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=2.458e-01	junction_possible_overlap_registers=144	key=Xen14_194__305__-1__Xen14_25__73240__-1__4____150__150__0__0	max_left=30	max_left_minus=13	max_left_plus=30	max_min_left=30	max_min_left_minus=13	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=133	max_right_minus=133	max_right_plus=133	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.20	new_junction_read_count=13	polymorphism_frequency=2.458e-01	pos_hash_score=8	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13
JC	994	.	Xen14_198	19	1	Xen14_198	81	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=6.346e-02	junction_possible_overlap_registers=139	key=Xen14_198__19__1__Xen14_198__72__1__9____150__150__0__0	max_left=65	max_left_minus=65	max_left_plus=0	max_min_left=65	max_min_left_minus=65	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=89	max_right_minus=89	max_right_plus=0	neg_log10_pos_hash_p_value=999999.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=6.346e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=24	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	995	.	Xen14_20	1	1	Xen14_33	53189	-1	0	alignment_overlap=52	coverage_minus=37	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=96	key=Xen14_20__1__1__Xen14_33__53241__-1__52____150__150__0__0	max_left=92	max_left_minus=92	max_left_plus=92	max_min_left=41	max_min_left_minus=41	max_min_left_plus=40	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=192	max_right=96	max_right_minus=96	max_right_plus=96	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=69	polymorphism_frequency=1.000e+00	pos_hash_score=48	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=52	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=96	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	996	.	Xen14_20	75208	1	Xen14_54	41	-1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=17	flanking_left=150	flanking_right=41	frequency=5.688e-01	junction_possible_overlap_registers=148	key=Xen14_20__75208__1__Xen14_54__41__-1__0____150__41__0__1	max_left=149	max_left_minus=149	max_left_plus=149	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=41	max_min_right_plus=35	max_pos_hash_score=296	max_right=41	max_right_minus=41	max_right_plus=35	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=1.08	new_junction_read_count=153	polymorphism_frequency=5.688e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=79
JC	997	.	Xen14_20	75208	1	Xen14_68	16331	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=11	flanking_left=150	flanking_right=52	frequency=2.564e-01	junction_possible_overlap_registers=148	key=Xen14_20__75208__1__Xen14_68__16331__1__0____150__52__0__1	max_left=147	max_left_minus=144	max_left_plus=147	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=50	max_min_right_plus=51	max_pos_hash_score=296	max_right=51	max_right_minus=50	max_right_plus=51	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.29	new_junction_read_count=40	polymorphism_frequency=2.564e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	998	.	Xen14_200	1	1	Xen14_26	75	-1	-64	alignment_overlap=-64	coverage_minus=40	coverage_plus=29	flanking_left=150	flanking_right=75	frequency=1	junction_possible_overlap_registers=84	key=Xen14_200__1__1__Xen14_26__75__-1__-64__CGCAGTTTTTCTATCTGAGCCCGCAGATGTTCTATTTCCCGTTCATCTTCTTCGATCTTTTCTT__150__75__0__1	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=41	max_min_left_minus=39	max_min_left_plus=41	max_min_right=43	max_min_right_minus=42	max_min_right_plus=43	max_pos_hash_score=168	max_right=75	max_right_minus=75	max_right_plus=75	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.24	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=69	unique_read_sequence=CGCAGTTTTTCTATCTGAGCCCGCAGATGTTCTATTTCCCGTTCATCTTCTTCGATCTTTTCTT
JC	999	.	Xen14_202	276	1	Xen14_94	75	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=10	flanking_left=146	flanking_right=75	frequency=2.079e-02	junction_possible_overlap_registers=148	key=Xen14_202__276__1__Xen14_94__75__-1__0____146__75__0__1	max_left=97	max_left_minus=97	max_left_plus=96	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=75	max_min_right_minus=67	max_min_right_plus=75	max_pos_hash_score=296	max_right=75	max_right_minus=67	max_right_plus=75	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.05	new_junction_read_count=18	polymorphism_frequency=2.079e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=848	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	1000	.	Xen14_202	280	-1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=22	flanking_left=150	flanking_right=150	frequency=1.313e-01	junction_possible_overlap_registers=148	key=Xen14_202__280__-1__Xen14_38__48182__1__0____150__150__0__0	max_left=146	max_left_minus=138	max_left_plus=146	max_min_left=71	max_min_left_minus=70	max_min_left_plus=71	max_min_right=44	max_min_right_minus=44	max_min_right_plus=36	max_pos_hash_score=296	max_right=109	max_right_minus=108	max_right_plus=109	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.20	new_junction_read_count=75	polymorphism_frequency=1.313e-01	pos_hash_score=38	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=859	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=58
JC	1001	.	Xen14_204	1	1	Xen14_47	36190	1	-8	alignment_overlap=-8	coverage_minus=15	coverage_plus=16	flanking_left=150	flanking_right=85	frequency=4.549e-01	junction_possible_overlap_registers=140	key=Xen14_204__1__1__Xen14_47__36190__1__-8__ATTGCTGG__150__85__0__0	max_left=141	max_left_minus=139	max_left_plus=141	max_min_left=62	max_min_left_minus=62	max_min_left_plus=61	max_min_right=61	max_min_right_minus=60	max_min_right_plus=61	max_pos_hash_score=280	max_right=85	max_right_minus=85	max_right_plus=85	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.35	new_junction_read_count=45	polymorphism_frequency=4.549e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=31	unique_read_sequence=ATTGCTGG
JC	1002	.	Xen14_204	1	1	Xen14_90	82	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=0	flanking_left=150	flanking_right=82	frequency=9.044e-02	junction_possible_overlap_registers=147	key=Xen14_204__1__1__Xen14_90__82__-1__-1__A__150__82__0__0	max_left=148	max_left_minus=148	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_pos_hash_score=294	max_right=5	max_right_minus=5	max_right_plus=0	neg_log10_pos_hash_p_value=14.3	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=9.044e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=A
JC	1003	.	Xen14_206	327	1	Xen14_38	48182	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=18	flanking_left=77	flanking_right=150	frequency=1.038e-01	junction_possible_overlap_registers=148	key=Xen14_206__327__1__Xen14_38__48182__1__0____77__150__0__0	max_left=71	max_left_minus=71	max_left_plus=64	max_min_left=71	max_min_left_minus=71	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=125	max_right_minus=124	max_right_plus=125	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.08	new_junction_read_count=46	polymorphism_frequency=1.038e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=661	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=133	side_2_redundant=0	total_non_overlap_reads=36
JC	1004	.	Xen14_206	332	-1	Xen14_94	74	-1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=11	flanking_left=150	flanking_right=74	frequency=3.366e-02	junction_possible_overlap_registers=147	key=Xen14_206__332__-1__Xen14_94__75__-1__1____150__74__0__1	max_left=95	max_left_minus=93	max_left_plus=95	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=294	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.04	new_junction_read_count=21	polymorphism_frequency=3.366e-02	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.56	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=607	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=21
JC	1005	.	Xen14_21	75	-1	Xen14_93	7777	-1	-23	alignment_overlap=-23	coverage_minus=4	coverage_plus=15	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=125	key=Xen14_21__75__-1__Xen14_93__7777__-1__-23__AAATATGGCGGTGAGGGGGGGAT__75__150__1__0	max_left=75	max_left_minus=58	max_left_plus=75	max_min_left=62	max_min_left_minus=58	max_min_left_plus=62	max_min_right=54	max_min_right_minus=0	max_min_right_plus=54	max_pos_hash_score=250	max_right=123	max_right_minus=123	max_right_plus=123	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.36	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19	unique_read_sequence=AAATATGGCGGTGAGGGGGGGAT
JC	1006	.	Xen14_22	1	1	Xen14_38	18	-1	-19	alignment_overlap=-19	coverage_minus=15	coverage_plus=4	flanking_left=150	flanking_right=18	frequency=7.779e-01	junction_possible_overlap_registers=129	key=Xen14_22__1__1__Xen14_38__18__-1__-19__GACACGGAACAACGGCAAA__150__18__0__0	max_left=130	max_left_minus=129	max_left_plus=130	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=12	max_pos_hash_score=258	max_right=18	max_right_minus=18	max_right_plus=12	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.21	new_junction_read_count=29	polymorphism_frequency=7.779e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.15	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=19	side_2_redundant=0	total_non_overlap_reads=19	unique_read_sequence=GACACGGAACAACGGCAAA
JC	1007	.	Xen14_24	73364	1	Xen14_25	73236	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=12	flanking_left=150	flanking_right=150	frequency=2.945e-01	junction_possible_overlap_registers=144	key=Xen14_24__73364__1__Xen14_25__73240__-1__4____150__150__0__0	max_left=30	max_left_minus=13	max_left_plus=30	max_min_left=30	max_min_left_minus=13	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=288	max_right=133	max_right_minus=133	max_right_plus=133	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.18	new_junction_read_count=13	polymorphism_frequency=2.945e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=4	side_1_possible_overlap_registers=148	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=144	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13
JC	1008	.	Xen14_29	59	-1	Xen14_43	39557	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=59	flanking_right=150	frequency=6.849e-02	junction_possible_overlap_registers=148	key=Xen14_29__59__-1__Xen14_43__39557__-1__0____59__150__1__0	max_left=59	max_left_minus=0	max_left_plus=59	max_min_left=59	max_min_left_minus=0	max_min_left_plus=59	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=95	max_right_minus=0	max_right_plus=95	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.849e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=4
JC	1009	.	Xen14_29	59	-1	Xen14_96	3984	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=4	flanking_left=59	flanking_right=150	frequency=1.544e-01	junction_possible_overlap_registers=148	key=Xen14_29__59__-1__Xen14_96__3984__-1__0____59__150__1__0	max_left=36	max_left_minus=36	max_left_plus=30	max_min_left=36	max_min_left_minus=36	max_min_left_plus=30	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=149	max_right_minus=141	max_right_plus=149	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.23	new_junction_read_count=21	polymorphism_frequency=1.544e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=17
JC	1010	.	Xen14_31	30889	-1	Xen14_31	30898	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=2.477e-02	junction_possible_overlap_registers=140	key=Xen14_31__30889__-1__Xen14_31__30906__-1__8____150__150__0__0	max_left=134	max_left_minus=0	max_left_plus=134	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=48	max_min_right_minus=0	max_min_right_plus=48	max_pos_hash_score=280	max_right=48	max_right_minus=0	max_right_plus=48	neg_log10_pos_hash_p_value=19.3	new_junction_coverage=0.02	new_junction_read_count=4	polymorphism_frequency=2.477e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=167	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=4
JC	1011	.	Xen14_31	45155	1	Xen14_31	45193	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=2.258e-02	junction_possible_overlap_registers=137	key=Xen14_31__45155__1__Xen14_31__45182__1__11____150__150__0__0	max_left=95	max_left_minus=95	max_left_plus=73	max_min_left=57	max_min_left_minus=57	max_min_left_plus=0	max_min_right=66	max_min_right_minus=44	max_min_right_plus=66	max_pos_hash_score=274	max_right=82	max_right_minus=82	max_right_plus=66	neg_log10_pos_hash_p_value=19.1	new_junction_coverage=0.02	new_junction_read_count=4	polymorphism_frequency=2.258e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=197	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=164	side_2_redundant=0	total_non_overlap_reads=4
JC	1012	.	Xen14_33	1	1	Xen14_33	77	-1	-48	alignment_overlap=-48	coverage_minus=14	coverage_plus=14	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=100	key=Xen14_33__1__1__Xen14_33__77__-1__-48__ATATTCATCAGATTTATTAATTTGCTTTATGAATAACTTAAAGAACAT__150__77__0__1	max_left=100	max_left_minus=97	max_left_plus=100	max_min_left=49	max_min_left_minus=46	max_min_left_plus=49	max_min_right=51	max_min_right_minus=51	max_min_right_plus=51	max_pos_hash_score=200	max_right=64	max_right_minus=63	max_right_plus=64	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.49	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=28	unique_read_sequence=ATATTCATCAGATTTATTAATTTGCTTTATGAATAACTTAAAGAACAT
JC	1013	.	Xen14_37	76	1	Xen14_37	244	-1	-31	alignment_overlap=-31	coverage_minus=8	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=3.383e-01	junction_possible_overlap_registers=117	key=Xen14_37__76__1__Xen14_37__244__-1__-31__AGCGTCGCATCCGGCAATTGCACCGCGCCAC__150__150__0__0	max_left=107	max_left_minus=107	max_left_plus=105	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=43	max_pos_hash_score=234	max_right=65	max_right_minus=65	max_right_plus=43	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.25	new_junction_read_count=19	polymorphism_frequency=3.383e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=16	unique_read_sequence=AGCGTCGCATCCGGCAATTGCACCGCGCCAC
JC	1014	.	Xen14_37	76	1	Xen14_52	23350	1	-30	alignment_overlap=-30	coverage_minus=3	coverage_plus=7	flanking_left=150	flanking_right=150	frequency=1.548e-01	junction_possible_overlap_registers=118	key=Xen14_37__76__1__Xen14_52__23350__1__-30__AGCGTCGCATCCGGCAATTGCACCGCGCCA__150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=41	max_min_right_minus=25	max_min_right_plus=41	max_pos_hash_score=236	max_right=41	max_right_minus=25	max_right_plus=41	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.10	new_junction_read_count=10	polymorphism_frequency=1.548e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=AGCGTCGCATCCGGCAATTGCACCGCGCCA
JC	1015	.	Xen14_37	42805	-1	Xen14_55	54	-1	-33	alignment_overlap=-33	coverage_minus=8	coverage_plus=6	flanking_left=150	flanking_right=54	frequency=2.674e-01	junction_possible_overlap_registers=115	key=Xen14_37__42805__-1__Xen14_55__54__-1__-33__CTTGCGGGATTATGCTGCTTTAATCATTCAGGA__150__54__0__1	max_left=97	max_left_minus=94	max_left_plus=97	max_min_left=35	max_min_left_minus=35	max_min_left_plus=0	max_min_right=54	max_min_right_minus=54	max_min_right_plus=54	max_pos_hash_score=230	max_right=54	max_right_minus=54	max_right_plus=54	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.26	new_junction_read_count=19	polymorphism_frequency=2.674e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14	unique_read_sequence=CTTGCGGGATTATGCTGCTTTAATCATTCAGGA
JC	1016	.	Xen14_37	42805	-1	Xen14_55	56	-1	-46	alignment_overlap=-46	coverage_minus=7	coverage_plus=9	flanking_left=150	flanking_right=56	frequency=3.858e-01	junction_possible_overlap_registers=102	key=Xen14_37__42805__-1__Xen14_55__56__-1__-46__ATACGGGTGTTACCTGAAAGATTTCTACTCGGAACCAATGTTTAAA__150__56__0__1	max_left=76	max_left_minus=74	max_left_plus=76	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=47	max_min_right_minus=46	max_min_right_plus=47	max_pos_hash_score=204	max_right=56	max_right_minus=56	max_right_plus=47	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.45	new_junction_read_count=29	polymorphism_frequency=3.858e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16	unique_read_sequence=ATACGGGTGTTACCTGAAAGATTTCTACTCGGAACCAATGTTTAAA
JC	1017	.	Xen14_37	42885	-1	Xen14_55	54	-1	-51	alignment_overlap=-51	coverage_minus=15	coverage_plus=21	flanking_left=150	flanking_right=54	frequency=6.041e-01	junction_possible_overlap_registers=97	key=Xen14_37__42885__-1__Xen14_55__54__-1__-51__GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG__150__54__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=49	max_min_right_minus=49	max_min_right_plus=48	max_pos_hash_score=194	max_right=54	max_right_minus=54	max_right_plus=48	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.68	new_junction_read_count=42	polymorphism_frequency=6.041e-01	pos_hash_score=24	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36	unique_read_sequence=GATACTGCGCTGGATACTACAAACTACTTCCACCGAACCCACCGTCATTAG
JC	1018	.	Xen14_38	15257	1	Xen14_61	77	1	0	alignment_overlap=14	coverage_minus=44	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=4.823e-01	junction_possible_overlap_registers=134	key=Xen14_38__15257__1__Xen14_61__63__1__14____150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=133	max_min_left=65	max_min_left_minus=56	max_min_left_plus=65	max_min_right=65	max_min_right_minus=65	max_min_right_plus=54	max_pos_hash_score=268	max_right=134	max_right_minus=132	max_right_plus=134	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.68	new_junction_read_count=79	polymorphism_frequency=4.823e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=142	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=78
JC	1019	.	Xen14_38	15257	1	Xen14_63	19808	-1	0	alignment_overlap=14	coverage_minus=18	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=3.339e-01	junction_possible_overlap_registers=134	key=Xen14_38__15257__1__Xen14_63__19822__-1__14____150__150__0__0	max_left=128	max_left_minus=127	max_left_plus=128	max_min_left=67	max_min_left_minus=67	max_min_left_plus=67	max_min_right=67	max_min_right_minus=58	max_min_right_plus=67	max_pos_hash_score=268	max_right=135	max_right_minus=134	max_right_plus=135	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.41	new_junction_read_count=43	polymorphism_frequency=3.339e-01	pos_hash_score=32	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=142	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=42
JC	1020	.	Xen14_38	48182	1	Xen14_62	81	-1	-39	alignment_overlap=-39	coverage_minus=8	coverage_plus=0	flanking_left=150	flanking_right=81	frequency=2.652e-01	junction_possible_overlap_registers=109	key=Xen14_38__48182__1__Xen14_62__81__-1__-39__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC__150__81__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=218	max_right=81	max_right_minus=81	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.31	new_junction_read_count=21	polymorphism_frequency=2.652e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.40	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGC
JC	1021	.	Xen14_38	48182	1	Xen14_68	16309	1	-40	alignment_overlap=-40	coverage_minus=13	coverage_plus=28	flanking_left=150	flanking_right=74	frequency=3.974e-01	junction_possible_overlap_registers=108	key=Xen14_38__48182__1__Xen14_68__16309__1__-40__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC__150__74__0__1	max_left=109	max_left_minus=109	max_left_plus=92	max_min_left=45	max_min_left_minus=45	max_min_left_plus=45	max_min_right=30	max_min_right_minus=30	max_min_right_plus=30	max_pos_hash_score=216	max_right=74	max_right_minus=74	max_right_plus=74	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.58	new_junction_read_count=64	polymorphism_frequency=3.974e-01	pos_hash_score=25	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=41	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGGCC
JC	1022	.	Xen14_38	48182	1	Xen14_78	12478	1	-38	alignment_overlap=-38	coverage_minus=8	coverage_plus=0	flanking_left=150	flanking_right=82	frequency=2.051e-01	junction_possible_overlap_registers=110	key=Xen14_38__48182__1__Xen14_78__12478__1__-38__TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG__150__82__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=220	max_right=82	max_right_minus=82	max_right_plus=0	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.17	new_junction_read_count=21	polymorphism_frequency=2.051e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=8	unique_read_sequence=TTTGCGCCCGGATCAGGCCGCAGGGGGAAACTCTGCGG
JC	1023	.	Xen14_41	1	1	Xen14_76	12864	-1	0	alignment_overlap=67	coverage_minus=15	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=81	key=Xen14_41__1__1__Xen14_76__12931__-1__67____150__150__0__0	max_left=82	max_left_minus=82	max_left_plus=67	max_min_left=35	max_min_left_minus=35	max_min_left_plus=35	max_min_right=33	max_min_right_minus=31	max_min_right_plus=33	max_pos_hash_score=162	max_right=80	max_right_minus=80	max_right_plus=76	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.89	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=67	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=81	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	1024	.	Xen14_43	40930	-1	Xen14_43	40981	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.855e-02	junction_possible_overlap_registers=143	key=Xen14_43__40930__-1__Xen14_43__40986__-1__5____150__150__0__0	max_left=87	max_left_minus=0	max_left_plus=87	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=286	max_right=77	max_right_minus=0	max_right_plus=77	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=1.855e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.55	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=164	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.56	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=159	side_2_redundant=0	total_non_overlap_reads=3
JC	1025	.	Xen14_44	40	1	Xen14_44	66	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.350e-01	junction_possible_overlap_registers=137	key=Xen14_44__40__1__Xen14_44__55__1__11____150__150__0__0	max_left=50	max_left_minus=50	max_left_plus=15	max_min_left=50	max_min_left_minus=50	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=124	max_right_minus=95	max_right_plus=124	neg_log10_pos_hash_p_value=13.8	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=1.350e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.20	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=5
JC	1026	.	Xen14_45	36968	-1	Xen14_79	487	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=24	flanking_left=150	flanking_right=150	frequency=1.579e-01	junction_possible_overlap_registers=148	key=Xen14_45__36968__-1__Xen14_79__487__-1__0____150__150__0__0	max_left=117	max_left_minus=116	max_left_plus=117	max_min_left=8	max_min_left_minus=3	max_min_left_plus=8	max_min_right=44	max_min_right_minus=44	max_min_right_plus=41	max_pos_hash_score=296	max_right=149	max_right_minus=149	max_right_plus=149	neg_log10_pos_hash_p_value=10.7	new_junction_coverage=0.21	new_junction_read_count=33	polymorphism_frequency=1.579e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=177	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=175	side_2_redundant=0	total_non_overlap_reads=30
JC	1027	.	Xen14_46	40291	-1	Xen14_46	40294	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=9.890e-02	junction_possible_overlap_registers=140	key=Xen14_46__40291__-1__Xen14_46__40302__-1__8____150__150__0__0	max_left=130	max_left_minus=41	max_left_plus=130	max_min_left=41	max_min_left_minus=41	max_min_left_plus=0	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=280	max_right=66	max_right_minus=52	max_right_plus=66	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=9.890e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.35	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.34	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	1028	.	Xen14_47	36191	1	Xen14_55	26715	-1	-11	alignment_overlap=-11	coverage_minus=4	coverage_plus=5	flanking_left=84	flanking_right=150	frequency=2.453e-01	junction_possible_overlap_registers=137	key=Xen14_47__36191__1__Xen14_55__26715__-1__-11__ATTACTGCTAC__84__150__0__0	max_left=84	max_left_minus=84	max_left_plus=82	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=60	max_min_right_plus=57	max_pos_hash_score=274	max_right=60	max_right_minus=60	max_right_plus=57	neg_log10_pos_hash_p_value=10.1	new_junction_coverage=0.15	new_junction_read_count=17	polymorphism_frequency=2.453e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=ATTACTGCTAC
JC	1029	.	Xen14_48	34538	1	Xen14_48	34770	-1	0	alignment_overlap=36	coverage_minus=12	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=4.322e-01	junction_possible_overlap_registers=112	key=Xen14_48__34538__1__Xen14_48__34806__-1__36____150__150__0__0	max_left=37	max_left_minus=34	max_left_plus=37	max_min_left=37	max_min_left_minus=34	max_min_left_plus=37	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=224	max_right=113	max_right_minus=113	max_right_plus=113	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.31	new_junction_read_count=36	polymorphism_frequency=4.322e-01	pos_hash_score=28	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=36	side_1_possible_overlap_registers=148	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=112	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	1030	.	Xen14_5	63695	-1	Xen14_5	63703	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=3.318e-02	junction_possible_overlap_registers=143	key=Xen14_5__63695__-1__Xen14_5__63708__-1__5____150__150__0__0	max_left=126	max_left_minus=86	max_left_plus=126	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=31	max_min_right_minus=24	max_min_right_plus=31	max_pos_hash_score=286	max_right=31	max_right_minus=24	max_right_plus=31	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.318e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=3
JC	1031	.	Xen14_50	17807	1	Xen14_50	17839	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=5.232e-02	junction_possible_overlap_registers=142	key=Xen14_50__17807__1__Xen14_50__17833__1__6____150__150__0__0	max_left=136	max_left_minus=34	max_left_plus=136	max_min_left=34	max_min_left_minus=34	max_min_left_plus=34	max_min_right=8	max_min_right_minus=0	max_min_right_plus=8	max_pos_hash_score=284	max_right=110	max_right_minus=110	max_right_plus=93	neg_log10_pos_hash_p_value=15.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.232e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=6	side_1_possible_overlap_registers=148	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.45	side_2_overlap=0	side_2_possible_overlap_registers=142	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=3
JC	1032	.	Xen14_53	1	1	Xen14_56	161	-1	0	alignment_overlap=9	coverage_minus=28	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=4.088e-01	junction_possible_overlap_registers=139	key=Xen14_53__1__1__Xen14_56__170__-1__9____150__150__0__0	max_left=139	max_left_minus=137	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=57	max_min_right_plus=63	max_pos_hash_score=278	max_right=63	max_right_minus=57	max_right_plus=63	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.42	new_junction_read_count=65	polymorphism_frequency=4.088e-01	pos_hash_score=35	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=9	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=139	side_2_read_count=188	side_2_redundant=0	total_non_overlap_reads=53
JC	1033	.	Xen14_53	7718	1	Xen14_53	7755	1	0	alignment_overlap=11	coverage_minus=5	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=3.848e-02	junction_possible_overlap_registers=137	key=Xen14_53__7718__1__Xen14_53__7744__1__11____150__150__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=31	max_min_left_minus=31	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=110	max_right_minus=110	max_right_plus=0	neg_log10_pos_hash_p_value=16.5	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=3.848e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=136	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=5
JC	1034	.	Xen14_55	1	1	Xen14_55	54	-1	-55	alignment_overlap=-55	coverage_minus=9	coverage_plus=9	flanking_left=150	flanking_right=54	frequency=1	junction_possible_overlap_registers=93	key=Xen14_55__1__1__Xen14_55__54__-1__-55__CTACCAACTGAGCTAACGACCCCTTGCGGGATTATGCTGCTTTAATCATTCAGGA__150__54__0__1	max_left=92	max_left_minus=92	max_left_plus=92	max_min_left=38	max_min_left_minus=34	max_min_left_plus=38	max_min_right=42	max_min_right_minus=42	max_min_right_plus=37	max_pos_hash_score=186	max_right=54	max_right_minus=54	max_right_plus=54	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.39	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18	unique_read_sequence=CTACCAACTGAGCTAACGACCCCTTGCGGGATTATGCTGCTTTAATCATTCAGGA
JC	1035	.	Xen14_55	54	-1	Xen14_77	12590	1	-33	alignment_overlap=-33	coverage_minus=1	coverage_plus=4	flanking_left=54	flanking_right=80	frequency=1.954e-01	junction_possible_overlap_registers=115	key=Xen14_55__54__-1__Xen14_77__12590__1__-33__TCCTGAATGATTAAAGCAGCATAATCCCGCAAG__54__80__1__0	max_left=54	max_left_minus=54	max_left_plus=54	max_min_left=54	max_min_left_minus=54	max_min_left_plus=54	max_min_right=35	max_min_right_minus=0	max_min_right_plus=35	max_pos_hash_score=230	max_right=70	max_right_minus=60	max_right_plus=70	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.13	new_junction_read_count=10	polymorphism_frequency=1.954e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=TCCTGAATGATTAAAGCAGCATAATCCCGCAAG
JC	1036	.	Xen14_55	56	-1	Xen14_77	12590	1	-46	alignment_overlap=-46	coverage_minus=9	coverage_plus=7	flanking_left=56	flanking_right=80	frequency=NA	junction_possible_overlap_registers=102	key=Xen14_55__56__-1__Xen14_77__12590__1__-46__TTTAAACATTGGTTCCGAGTAGAAATCTTTCAGGTAACACCCGTAT__56__80__1__1	max_left=56	max_left_minus=47	max_left_plus=56	max_min_left=47	max_min_left_minus=47	max_min_left_plus=46	max_min_right=44	max_min_right_minus=0	max_min_right_plus=44	max_pos_hash_score=204	max_right=76	max_right_minus=76	max_right_plus=74	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.42	new_junction_read_count=28	polymorphism_frequency=NA	pos_hash_score=12	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16	unique_read_sequence=TTTAAACATTGGTTCCGAGTAGAAATCTTTCAGGTAACACCCGTAT
JC	1037	.	Xen14_55	26715	-1	Xen14_90	74	-1	-11	alignment_overlap=-11	coverage_minus=32	coverage_plus=21	flanking_left=150	flanking_right=74	frequency=1	junction_possible_overlap_registers=137	key=Xen14_55__26715__-1__Xen14_90__74__-1__-11__GTAGCAGTAAT__150__74__0__1	max_left=138	max_left_minus=138	max_left_plus=138	max_min_left=65	max_min_left_minus=65	max_min_left_plus=54	max_min_right=67	max_min_right_minus=65	max_min_right_plus=67	max_pos_hash_score=274	max_right=74	max_right_minus=74	max_right_plus=67	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.54	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=53	unique_read_sequence=GTAGCAGTAAT
JC	1038	.	Xen14_75	12904	1	Xen14_75	12904	-1	-9	alignment_overlap=-9	coverage_minus=17	coverage_plus=40	flanking_left=149	flanking_right=150	frequency=3.907e-01	junction_possible_overlap_registers=139	key=Xen14_75__12904__1__Xen14_75__12904__-1__-9__TGATCGGCA__149__150__0__0	max_left=49	max_left_minus=48	max_left_plus=49	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=278	max_right=140	max_right_minus=140	max_right_plus=137	neg_log10_pos_hash_p_value=4.0	new_junction_coverage=0.68	new_junction_read_count=78	polymorphism_frequency=3.907e-01	pos_hash_score=34	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=132	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=57	unique_read_sequence=TGATCGGCA
JC	1039	.	Xen14_78	1	1	Xen14_78	77	-1	-64	alignment_overlap=-64	coverage_minus=23	coverage_plus=35	flanking_left=150	flanking_right=77	frequency=1	junction_possible_overlap_registers=84	key=Xen14_78__1__1__Xen14_78__77__-1__-64__CGGGATGCCCCGGATGCCTGTCCACTTGTCGGTGGCGGCGGTGCCGGACGGGTTGGCTTAAAGT__150__77__0__1	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=42	max_min_left_minus=42	max_min_left_plus=36	max_min_right=42	max_min_right_minus=42	max_min_right_plus=40	max_pos_hash_score=168	max_right=55	max_right_minus=55	max_right_plus=54	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.50	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=58	unique_read_sequence=CGGGATGCCCCGGATGCCTGTCCACTTGTCGGTGGCGGCGGTGCCGGACGGGTTGGCTTAAAGT
JC	1040	.	Xen14_79	487	-1	Xen14_85	77	-1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=36	flanking_left=150	flanking_right=77	frequency=3.566e-01	junction_possible_overlap_registers=148	key=Xen14_79__487__-1__Xen14_85__77__-1__0____150__77__0__1	max_left=149	max_left_minus=149	max_left_plus=149	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=75	max_min_right_minus=72	max_min_right_plus=75	max_pos_hash_score=296	max_right=77	max_right_minus=77	max_right_plus=75	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.65	new_junction_read_count=97	polymorphism_frequency=3.566e-01	pos_hash_score=51	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=175	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=85
JC	1041	.	Xen14_8	13989	1	Xen14_8	13985	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.874e-02	junction_possible_overlap_registers=137	key=Xen14_8__13989__1__Xen14_8__13996__-1__11____150__150__0__0	max_left=93	max_left_minus=0	max_left_plus=93	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=274	max_right=123	max_right_minus=0	max_right_plus=123	neg_log10_pos_hash_p_value=17.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=1.874e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=172	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=155	side_2_redundant=0	total_non_overlap_reads=3
JC	1042	.	Xen14_8	74403	1	Xen14_8	74429	1	0	alignment_overlap=11	coverage_minus=3	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=4.896e-02	junction_possible_overlap_registers=137	key=Xen14_8__74403__1__Xen14_8__74418__1__11____150__150__0__0	max_left=36	max_left_minus=30	max_left_plus=36	max_min_left=36	max_min_left_minus=30	max_min_left_plus=36	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=134	max_right_minus=134	max_right_plus=78	neg_log10_pos_hash_p_value=16.4	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.896e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	1043	.	Xen14_82	366	-1	Xen14_83	11337	-1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=3.444e-01	junction_possible_overlap_registers=145	key=Xen14_82__366__-1__Xen14_83__11340__-1__3____150__150__0__0	max_left=146	max_left_minus=142	max_left_plus=146	max_min_left=52	max_min_left_minus=0	max_min_left_plus=52	max_min_right=61	max_min_right_minus=40	max_min_right_plus=61	max_pos_hash_score=290	max_right=139	max_right_minus=40	max_right_plus=139	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.29	new_junction_read_count=35	polymorphism_frequency=3.444e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=3	side_1_possible_overlap_registers=148	side_1_read_count=136	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=145	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	1044	.	Xen14_86	1	1	Xen14_96	6916	-1	-1	alignment_overlap=-1	coverage_minus=36	coverage_plus=55	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_86__1__1__Xen14_96__6916__-1__-1__C__150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=144	max_min_left=74	max_min_left_minus=70	max_min_left_plus=74	max_min_right=74	max_min_right_minus=71	max_min_right_plus=74	max_pos_hash_score=294	max_right=147	max_right_minus=131	max_right_plus=147	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.83	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=54	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91	unique_read_sequence=C
JC	1045	.	Xen14_86	1	1	Xen14_96	6916	-1	-1	alignment_overlap=-1	coverage_minus=45	coverage_plus=48	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen14_86__1__1__Xen14_96__6916__-1__-1__T__150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=72	max_min_right_minus=71	max_min_right_plus=72	max_pos_hash_score=294	max_right=146	max_right_minus=140	max_right_plus=146	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.85	new_junction_read_count=93	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=93	unique_read_sequence=T
JC	1046	.	Xen14_86	254	1	Xen14_86	10821	1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=16	flanking_left=150	flanking_right=133	frequency=2.127e-01	junction_possible_overlap_registers=147	key=Xen14_86__254__1__Xen14_86__10820__1__1____150__133__0__0	max_left=55	max_left_minus=46	max_left_plus=55	max_min_left=55	max_min_left_minus=46	max_min_left_plus=55	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=133	max_right_minus=133	max_right_plus=133	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.36	new_junction_read_count=35	polymorphism_frequency=2.127e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.39	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=23
JC	1047	.	Xen14_9	104776	-1	Xen14_9	104798	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=4.997e-02	junction_possible_overlap_registers=141	key=Xen14_9__104776__-1__Xen14_9__104805__-1__7____150__150__0__0	max_left=111	max_left_minus=0	max_left_plus=111	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=282	max_right=57	max_right_minus=0	max_right_plus=57	neg_log10_pos_hash_p_value=16.3	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.997e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=6
UN	1048	.	Xen14_1	242556	242556
UN	1049	.	Xen14_10	1	1
UN	1050	.	Xen14_100	1	1
UN	1051	.	Xen14_100	5845	5846
UN	1052	.	Xen14_101	1	1
UN	1053	.	Xen14_101	5614	5615
UN	1054	.	Xen14_102	1	1
UN	1055	.	Xen14_103	1	1
UN	1056	.	Xen14_103	5307	5307
UN	1057	.	Xen14_104	1	1
UN	1058	.	Xen14_104	5093	5096
UN	1059	.	Xen14_105	1	1
UN	1060	.	Xen14_105	5061	5061
UN	1061	.	Xen14_106	1	1
UN	1062	.	Xen14_106	4995	4995
UN	1063	.	Xen14_107	1	13
UN	1064	.	Xen14_107	4932	4932
UN	1065	.	Xen14_108	1	1
UN	1066	.	Xen14_108	4816	4816
UN	1067	.	Xen14_109	1	6
UN	1068	.	Xen14_109	317	322
UN	1069	.	Xen14_109	329	331
UN	1070	.	Xen14_109	333	334
UN	1071	.	Xen14_109	4613	4616
UN	1072	.	Xen14_11	1	1
UN	1073	.	Xen14_11	106941	106943
UN	1074	.	Xen14_110	4563	4578
UN	1075	.	Xen14_111	1	1
UN	1076	.	Xen14_111	4562	4562
UN	1077	.	Xen14_112	1	4
UN	1078	.	Xen14_112	4183	4183
UN	1079	.	Xen14_112	4485	4486
UN	1080	.	Xen14_114	1	1
UN	1081	.	Xen14_114	4039	4039
UN	1082	.	Xen14_115	1	1
UN	1083	.	Xen14_115	3633	3633
UN	1084	.	Xen14_116	1	1
UN	1085	.	Xen14_116	3428	3428
UN	1086	.	Xen14_117	1	3
UN	1087	.	Xen14_117	3427	3427
UN	1088	.	Xen14_118	3340	3355
UN	1089	.	Xen14_119	1	3
UN	1090	.	Xen14_12	1	2
UN	1091	.	Xen14_12	100885	100898
UN	1092	.	Xen14_120	1	4
UN	1093	.	Xen14_120	3113	3123
UN	1094	.	Xen14_121	3075	3076
UN	1095	.	Xen14_122	1	1
UN	1096	.	Xen14_122	2908	2908
UN	1097	.	Xen14_125	1	1
UN	1098	.	Xen14_125	402	402
UN	1099	.	Xen14_125	874	874
UN	1100	.	Xen14_125	1485	1485
UN	1101	.	Xen14_125	1741	1742
UN	1102	.	Xen14_125	1790	1790
UN	1103	.	Xen14_125	1947	1947
UN	1104	.	Xen14_125	2323	2339
UN	1105	.	Xen14_125	2379	2379
UN	1106	.	Xen14_125	2519	2519
UN	1107	.	Xen14_126	1	59
UN	1108	.	Xen14_126	62	62
UN	1109	.	Xen14_126	64	64
UN	1110	.	Xen14_126	2514	2515
UN	1111	.	Xen14_127	1	2
UN	1112	.	Xen14_127	2166	2166
UN	1113	.	Xen14_128	1	1
UN	1114	.	Xen14_128	2143	2143
UN	1115	.	Xen14_129	1	1
UN	1116	.	Xen14_129	2049	2049
UN	1117	.	Xen14_13	1	1
UN	1118	.	Xen14_130	1	3
UN	1119	.	Xen14_130	1999	2000
UN	1120	.	Xen14_131	1	9
UN	1121	.	Xen14_131	905	905
UN	1122	.	Xen14_131	1905	1905
UN	1123	.	Xen14_131	1922	1922
UN	1124	.	Xen14_132	1	1
UN	1125	.	Xen14_132	1805	1806
UN	1126	.	Xen14_133	1	1
UN	1127	.	Xen14_133	1721	1721
UN	1128	.	Xen14_134	1	23
UN	1129	.	Xen14_134	1657	1657
UN	1130	.	Xen14_135	1	1
UN	1131	.	Xen14_135	1631	1633
UN	1132	.	Xen14_136	1567	1567
UN	1133	.	Xen14_137	1	2
UN	1134	.	Xen14_137	1543	1544
UN	1135	.	Xen14_138	1	2
UN	1136	.	Xen14_139	1	1
UN	1137	.	Xen14_139	1349	1349
UN	1138	.	Xen14_14	1	1
UN	1139	.	Xen14_14	89142	89144
UN	1140	.	Xen14_140	1	1
UN	1141	.	Xen14_140	1297	1298
UN	1142	.	Xen14_141	1292	1292
UN	1143	.	Xen14_142	1	3
UN	1144	.	Xen14_142	1270	1281
UN	1145	.	Xen14_143	1	1
UN	1146	.	Xen14_143	1107	1107
UN	1147	.	Xen14_144	1	1
UN	1148	.	Xen14_144	1089	1091
UN	1149	.	Xen14_145	1062	1062
UN	1150	.	Xen14_146	1	2
UN	1151	.	Xen14_146	1045	1046
UN	1152	.	Xen14_147	1	1
UN	1153	.	Xen14_147	1007	1007
UN	1154	.	Xen14_148	1	4
UN	1155	.	Xen14_15	1	5
UN	1156	.	Xen14_15	83869	83869
UN	1157	.	Xen14_150	1	2
UN	1158	.	Xen14_150	945	945
UN	1159	.	Xen14_151	938	938
UN	1160	.	Xen14_152	1	5
UN	1161	.	Xen14_152	934	934
UN	1162	.	Xen14_153	1	1
UN	1163	.	Xen14_153	929	929
UN	1164	.	Xen14_154	1	1
UN	1165	.	Xen14_154	920	920
UN	1166	.	Xen14_155	1	1
UN	1167	.	Xen14_155	900	900
UN	1168	.	Xen14_156	1	1
UN	1169	.	Xen14_156	860	862
UN	1170	.	Xen14_157	1	1
UN	1171	.	Xen14_157	857	857
UN	1172	.	Xen14_158	1	1
UN	1173	.	Xen14_158	799	799
UN	1174	.	Xen14_159	1	2
UN	1175	.	Xen14_159	78	78
UN	1176	.	Xen14_159	80	80
UN	1177	.	Xen14_159	796	798
UN	1178	.	Xen14_16	1	1
UN	1179	.	Xen14_16	81941	81941
UN	1180	.	Xen14_161	1	2
UN	1181	.	Xen14_161	770	770
UN	1182	.	Xen14_162	1	1
UN	1183	.	Xen14_162	765	765
UN	1184	.	Xen14_163	1	1
UN	1185	.	Xen14_164	1	9
UN	1186	.	Xen14_164	736	746
UN	1187	.	Xen14_165	1	2
UN	1188	.	Xen14_166	1	1
UN	1189	.	Xen14_167	1	1
UN	1190	.	Xen14_169	626	626
UN	1191	.	Xen14_17	1	1
UN	1192	.	Xen14_17	80387	80390
UN	1193	.	Xen14_170	1	3
UN	1194	.	Xen14_170	618	619
UN	1195	.	Xen14_171	569	569
UN	1196	.	Xen14_172	569	569
UN	1197	.	Xen14_173	1	3
UN	1198	.	Xen14_173	564	564
UN	1199	.	Xen14_174	564	564
UN	1200	.	Xen14_175	1	3
UN	1201	.	Xen14_175	560	560
UN	1202	.	Xen14_176	1	4
UN	1203	.	Xen14_176	551	552
UN	1204	.	Xen14_178	1	1
UN	1205	.	Xen14_178	537	541
UN	1206	.	Xen14_179	1	1
UN	1207	.	Xen14_179	531	536
UN	1208	.	Xen14_18	1	1
UN	1209	.	Xen14_18	78780	78780
UN	1210	.	Xen14_180	1	2
UN	1211	.	Xen14_181	1	4
UN	1212	.	Xen14_181	511	511
UN	1213	.	Xen14_182	1	1
UN	1214	.	Xen14_182	470	478
UN	1215	.	Xen14_183	1	11
UN	1216	.	Xen14_183	477	477
UN	1217	.	Xen14_184	1	1
UN	1218	.	Xen14_185	1	4
UN	1219	.	Xen14_185	470	471
UN	1220	.	Xen14_186	1	1
UN	1221	.	Xen14_186	465	465
UN	1222	.	Xen14_187	1	1
UN	1223	.	Xen14_188	1	1
UN	1224	.	Xen14_189	1	1
UN	1225	.	Xen14_189	448	453
UN	1226	.	Xen14_19	1	1
UN	1227	.	Xen14_19	77008	77008
UN	1228	.	Xen14_190	1	1
UN	1229	.	Xen14_190	448	448
UN	1230	.	Xen14_191	1	1
UN	1231	.	Xen14_191	444	447
UN	1232	.	Xen14_192	445	445
UN	1233	.	Xen14_193	1	1
UN	1234	.	Xen14_194	1	1
UN	1235	.	Xen14_194	440	442
UN	1236	.	Xen14_195	1	1
UN	1237	.	Xen14_195	441	441
UN	1238	.	Xen14_196	1	1
UN	1239	.	Xen14_196	436	436
UN	1240	.	Xen14_197	1	2
UN	1241	.	Xen14_197	416	433
UN	1242	.	Xen14_198	1	1
UN	1243	.	Xen14_199	1	5
UN	1244	.	Xen14_199	428	428
UN	1245	.	Xen14_2	1	10
UN	1246	.	Xen14_2	185192	185210
UN	1247	.	Xen14_20	75563	75563
UN	1248	.	Xen14_200	421	423
UN	1249	.	Xen14_201	1	1
UN	1250	.	Xen14_201	421	421
UN	1251	.	Xen14_202	1	1
UN	1252	.	Xen14_202	421	421
UN	1253	.	Xen14_203	1	1
UN	1254	.	Xen14_203	416	416
UN	1255	.	Xen14_204	1	1
UN	1256	.	Xen14_204	415	415
UN	1257	.	Xen14_205	1	3
UN	1258	.	Xen14_206	1	2
UN	1259	.	Xen14_21	1	10
UN	1260	.	Xen14_21	74836	74837
UN	1261	.	Xen14_22	1	1
UN	1262	.	Xen14_22	74443	74443
UN	1263	.	Xen14_22	74447	74457
UN	1264	.	Xen14_23	1	2
UN	1265	.	Xen14_23	73973	73975
UN	1266	.	Xen14_24	1	1
UN	1267	.	Xen14_24	73668	73668
UN	1268	.	Xen14_25	1	8
UN	1269	.	Xen14_25	73237	73240
UN	1270	.	Xen14_26	1	1
UN	1271	.	Xen14_26	73209	73210
UN	1272	.	Xen14_27	1	1
UN	1273	.	Xen14_27	70100	70100
UN	1274	.	Xen14_27	70661	70661
UN	1275	.	Xen14_27	71183	71183
UN	1276	.	Xen14_27	71260	71260
UN	1277	.	Xen14_28	1	1
UN	1278	.	Xen14_28	64041	64054
UN	1279	.	Xen14_29	1	4
UN	1280	.	Xen14_29	62106	62123
UN	1281	.	Xen14_3	1	1
UN	1282	.	Xen14_3	166310	166311
UN	1283	.	Xen14_30	1	6
UN	1284	.	Xen14_30	61660	61661
UN	1285	.	Xen14_31	1	12
UN	1286	.	Xen14_31	58810	58819
UN	1287	.	Xen14_32	1	2
UN	1288	.	Xen14_32	55381	55391
UN	1289	.	Xen14_33	53219	53241
UN	1290	.	Xen14_34	1	1
UN	1291	.	Xen14_34	53077	53084
UN	1292	.	Xen14_35	1	1
UN	1293	.	Xen14_35	52845	52845
UN	1294	.	Xen14_36	1	1
UN	1295	.	Xen14_36	51934	51934
UN	1296	.	Xen14_37	1	1
UN	1297	.	Xen14_37	179	179
UN	1298	.	Xen14_37	51424	51424
UN	1299	.	Xen14_38	1	1
UN	1300	.	Xen14_38	15362	15362
UN	1301	.	Xen14_38	48227	48227
UN	1302	.	Xen14_38	48835	48836
UN	1303	.	Xen14_39	1	2
UN	1304	.	Xen14_4	1	1
UN	1305	.	Xen14_4	151524	151524
UN	1306	.	Xen14_40	1	1
UN	1307	.	Xen14_40	46761	46761
UN	1308	.	Xen14_40	46767	46767
UN	1309	.	Xen14_40	46771	46771
UN	1310	.	Xen14_40	46775	46775
UN	1311	.	Xen14_40	46777	46791
UN	1312	.	Xen14_41	41429	41431
UN	1313	.	Xen14_42	1	1
UN	1314	.	Xen14_42	41402	41403
UN	1315	.	Xen14_43	1	1
UN	1316	.	Xen14_43	36457	36465
UN	1317	.	Xen14_43	39195	39195
UN	1318	.	Xen14_43	39291	39291
UN	1319	.	Xen14_43	39296	39296
UN	1320	.	Xen14_43	39300	39300
UN	1321	.	Xen14_43	39312	39312
UN	1322	.	Xen14_43	39435	39435
UN	1323	.	Xen14_43	39657	39657
UN	1324	.	Xen14_43	39862	39862
UN	1325	.	Xen14_43	39877	39878
UN	1326	.	Xen14_43	39899	39899
UN	1327	.	Xen14_43	41131	41131
UN	1328	.	Xen14_43	41148	41148
UN	1329	.	Xen14_43	41162	41162
UN	1330	.	Xen14_43	41182	41182
UN	1331	.	Xen14_43	41295	41296
UN	1332	.	Xen14_44	1	1
UN	1333	.	Xen14_44	40957	40957
UN	1334	.	Xen14_45	1	2
UN	1335	.	Xen14_46	1	1
UN	1336	.	Xen14_46	40336	40351
UN	1337	.	Xen14_47	1	1
UN	1338	.	Xen14_47	36274	36274
UN	1339	.	Xen14_48	1	1
UN	1340	.	Xen14_48	34805	34806
UN	1341	.	Xen14_49	1	2
UN	1342	.	Xen14_49	34102	34102
UN	1343	.	Xen14_5	1	21
UN	1344	.	Xen14_5	23	23
UN	1345	.	Xen14_5	149062	149062
UN	1346	.	Xen14_50	1	2
UN	1347	.	Xen14_50	33368	33369
UN	1348	.	Xen14_51	1	1
UN	1349	.	Xen14_51	32311	32311
UN	1350	.	Xen14_52	31365	31365
UN	1351	.	Xen14_53	1	3
UN	1352	.	Xen14_53	30293	30293
UN	1353	.	Xen14_54	1	9
UN	1354	.	Xen14_54	28579	28579
UN	1355	.	Xen14_55	1	4
UN	1356	.	Xen14_56	1	5
UN	1357	.	Xen14_56	26420	26428
UN	1358	.	Xen14_57	1	1
UN	1359	.	Xen14_57	25333	25388
UN	1360	.	Xen14_57	26242	26242
UN	1361	.	Xen14_58	1	15
UN	1362	.	Xen14_58	24566	24572
UN	1363	.	Xen14_59	1	2
UN	1364	.	Xen14_59	24177	24177
UN	1365	.	Xen14_6	1	3
UN	1366	.	Xen14_6	146759	146760
UN	1367	.	Xen14_60	1	10
UN	1368	.	Xen14_60	23186	23187
UN	1369	.	Xen14_61	1	1
UN	1370	.	Xen14_61	21382	21383
UN	1371	.	Xen14_62	1	28
UN	1372	.	Xen14_62	20210	20210
UN	1373	.	Xen14_63	1	2
UN	1374	.	Xen14_63	19884	19884
UN	1375	.	Xen14_64	1	1
UN	1376	.	Xen14_64	1211	1211
UN	1377	.	Xen14_64	1391	1391
UN	1378	.	Xen14_64	1397	1397
UN	1379	.	Xen14_64	1893	1893
UN	1380	.	Xen14_64	1917	1917
UN	1381	.	Xen14_64	1935	1935
UN	1382	.	Xen14_64	18269	18269
UN	1383	.	Xen14_65	1	1
UN	1384	.	Xen14_65	17067	17137
UN	1385	.	Xen14_65	17856	17856
UN	1386	.	Xen14_66	1	1
UN	1387	.	Xen14_66	17785	17785
UN	1388	.	Xen14_67	1	19
UN	1389	.	Xen14_67	17696	17704
UN	1390	.	Xen14_68	1	1
UN	1391	.	Xen14_68	16382	16382
UN	1392	.	Xen14_69	1	1
UN	1393	.	Xen14_69	14625	14625
UN	1394	.	Xen14_7	1	1
UN	1395	.	Xen14_7	136505	136514
UN	1396	.	Xen14_70	1	18
UN	1397	.	Xen14_70	1040	1040
UN	1398	.	Xen14_70	14217	14217
UN	1399	.	Xen14_70	14402	14402
UN	1400	.	Xen14_71	1	2
UN	1401	.	Xen14_71	14304	14304
UN	1402	.	Xen14_72	1	2
UN	1403	.	Xen14_72	13686	13687
UN	1404	.	Xen14_73	1	1
UN	1405	.	Xen14_73	13158	13160
UN	1406	.	Xen14_74	1	1
UN	1407	.	Xen14_74	13069	13069
UN	1408	.	Xen14_75	1	1
UN	1409	.	Xen14_75	13052	13052
UN	1410	.	Xen14_76	1	8
UN	1411	.	Xen14_76	12843	12843
UN	1412	.	Xen14_76	12921	12931
UN	1413	.	Xen14_77	1	2
UN	1414	.	Xen14_77	12668	12669
UN	1415	.	Xen14_78	12557	12559
UN	1416	.	Xen14_79	1	1
UN	1417	.	Xen14_79	78	78
UN	1418	.	Xen14_79	12459	12553
UN	1419	.	Xen14_8	1	2
UN	1420	.	Xen14_8	132518	132518
UN	1421	.	Xen14_80	1	11
UN	1422	.	Xen14_80	12035	12035
UN	1423	.	Xen14_81	1	1
UN	1424	.	Xen14_81	12020	12020
UN	1425	.	Xen14_82	11976	11983
UN	1426	.	Xen14_83	1	1
UN	1427	.	Xen14_83	11302	11303
UN	1428	.	Xen14_83	11305	11305
UN	1429	.	Xen14_83	11307	11308
UN	1430	.	Xen14_83	11310	11356
UN	1431	.	Xen14_84	1	1
UN	1432	.	Xen14_84	2731	2748
UN	1433	.	Xen14_84	11356	11356
UN	1434	.	Xen14_85	1	2
UN	1435	.	Xen14_85	6783	6783
UN	1436	.	Xen14_85	6793	6793
UN	1437	.	Xen14_85	7570	7570
UN	1438	.	Xen14_85	7573	7573
UN	1439	.	Xen14_85	7609	7609
UN	1440	.	Xen14_85	7699	7699
UN	1441	.	Xen14_85	11188	11197
UN	1442	.	Xen14_86	362	362
UN	1443	.	Xen14_86	375	375
UN	1444	.	Xen14_86	10953	10953
UN	1445	.	Xen14_87	1	1
UN	1446	.	Xen14_87	10348	10348
UN	1447	.	Xen14_88	1	1
UN	1448	.	Xen14_88	10259	10259
UN	1449	.	Xen14_89	1	1
UN	1450	.	Xen14_89	10105	10105
UN	1451	.	Xen14_9	129935	129936
UN	1452	.	Xen14_90	1	3
UN	1453	.	Xen14_90	8	8
UN	1454	.	Xen14_90	9218	9218
UN	1455	.	Xen14_91	1	1
UN	1456	.	Xen14_91	8912	8913
UN	1457	.	Xen14_92	1	2
UN	1458	.	Xen14_92	8227	8227
UN	1459	.	Xen14_92	8232	8232
UN	1460	.	Xen14_93	1	2
UN	1461	.	Xen14_94	1	2
UN	1462	.	Xen14_94	7584	7584
UN	1463	.	Xen14_95	1	3
UN	1464	.	Xen14_95	7342	7342
UN	1465	.	Xen14_96	1	4
UN	1466	.	Xen14_97	1	1
UN	1467	.	Xen14_97	6746	6746
UN	1468	.	Xen14_98	1	1
UN	1469	.	Xen14_98	6517	6517
UN	1470	.	Xen14_98	6594	6594
UN	1471	.	Xen14_99	1	2