New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_141	1 =	0 (0.000)	34 (0.040) +GCTCTCC	25/282	1.4	100%	intergenic (–/‑23)	–/Xen14_04755	–/hypothetical protein
	?	Xen14_39	= 48485	0 (0.000)					intergenic (‑47/–)	Xen14_03386/–	hypothetical protein/–

ATATCGAGTTGGTGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_39/48338‑48485                                                                                                                                                    |                                                                  atatCGAGTTGGTGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAgg                                                                 >  1:2322888‑M2/1‑148 (MQ=255)     cGAGTTGGTGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagag                                                             >  1:1396899‑M2/1‑144 (MQ=255)     cGAATTGGTGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagag                                                             >  1:1578593‑M2/1‑144 (MQ=255)      gaattggtGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCCGCTCTCCTGATTCAggagagc                                                            >  1:1280379‑M2/4‑143 (MQ=255)      gAGTTGGTGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagc                                                            >  1:3627687‑M2/1‑143 (MQ=255)             tGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggt                                                     <  1:1693141‑M2/150‑15 (MQ=255)                    tCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcactttt                                              <  1:1088256‑M2/150‑22 (MQ=255)                    tCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcactttt                                              <  1:1088257‑M2/150‑22 (MQ=255)                     cAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttg                                             >  1:2661583‑M2/1‑128 (MQ=255)                     cAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttg                                             >  1:1176310‑M2/1‑128 (MQ=255)                       gtgtttcgtTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttgtgag                                           >  1:3609371‑M2/4‑126 (MQ=255)                       gTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgag                                           <  1:2002307‑M2/150‑25 (MQ=255)                         ttttCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagac                                         <  1:1758858‑M2/150‑27 (MQ=255)                         ttttCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCATGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagac                                         <  1:2830027‑M2/150‑27 (MQ=255)                               ttAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggggagcttatggtcacttttgagacagtt                                     <  1:3041697‑M2/148‑31 (MQ=255)                                tAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatg                                  >  1:3667765‑M2/1‑117 (MQ=255)                                tAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatg                                  <  1:3041157‑M2/150‑34 (MQ=255)                                 aaGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatgg                                 <  1:3225185‑M2/150‑35 (MQ=255)                                        gCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaa                          <  1:3288444‑M2/150‑42 (MQ=255)                                         cACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGTTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaa                         >  1:613489‑M2/1‑108 (MQ=255)                                             gCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcc                     >  1:1043618‑M2/1‑104 (MQ=255)                                              cTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcct                    <  1:2578554‑M2/150‑48 (MQ=255)                                                aTTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgc                  <  1:1597911‑M2/150‑50 (MQ=255)                                                aTTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgc                  <  1:2726593‑M2/150‑50 (MQ=255)                                                      aTGAAGATAGATAACGATTGTNACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGCTTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagc            <  1:3508488‑M2/150‑56 (MQ=255)                                                         aaGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagg         <  1:3811828‑M2/150‑59 (MQ=255)                                                           gatagataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcaggga       <  1:382530‑M2/150‑61 (MQ=255)                                                            atagataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa      >  1:3037499‑M2/1‑89 (MQ=255)                                                             tagataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagtttatggtcacttttgagacggttatggaaattaaaatcctgcacaagcagggaat     <  1:2247502‑M2/150‑63 (MQ=255)                                                             tagataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat     >  1:4087624‑M2/1‑88 (MQ=255)                                                              agataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatg    >  1:1486444‑M2/1‑87 (MQ=255)                                                               gataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaa              <  1:34316‑M2/139‑54 (MQ=255)                                                                atcacatttgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  >  1:2594095‑M2/8‑85 (MQ=255)                                                                atcacatttgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  >  1:188572‑M2/8‑85 (MQ=255)                                                                atcacatttgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  >  1:188571‑M2/8‑85 (MQ=255)                                                                atcacatttgtcacgaACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  >  1:1652744‑M2/8‑85 (MQ=255)                                                                ataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  <  1:3295676‑M2/150‑66 (MQ=255)                                                                ataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  >  1:4230803‑M2/1‑85 (MQ=255)                                                                ataACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCAggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag  <  1:529289‑M2/150‑66 (MQ=255)                                                                                                                                                    |                                                                  ATATCGAGTTGGTGATTTATCAGTTTTTCGTTAAGCACTGCACCGCTATTTTCATGAAGATAGATAACGATTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_39/48338‑48485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.