New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_194	= 305	82 (1.130)	13 (0.200)	8/288	1.3	24.6%	coding (266/270 nt)	Xen14_04786	hypothetical protein
	?	Xen14_25	= 73236	0 (0.000)					intergenic (‑406/–)	Xen14_02638/–	hypothetical protein/–

ATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCA  >  Xen14_25/73104‑73240                                                                                                                                     |                                   aTTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGTTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatatt                   >  1:3963442‑M2/1‑133 (MQ=255) aTTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatatt                   <  1:1485542‑M2/150‑18 (MQ=255)    tGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAACAACCGGAGCCGGACTCAGGTTTTTTTGTGAACCCGTCGGCTATttcataccgcaaatattttc                <  1:3160725‑M2/150‑21 (MQ=255)       cccTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCGTGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttccca             <  1:3934963‑M2/150‑24 (MQ=255)       cccTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccgatattttccca             <  1:2349725‑M2/150‑24 (MQ=255)        ccTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccac            <  1:313881‑M2/150‑25 (MQ=255)        ccTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccac            <  1:313884‑M2/150‑25 (MQ=255)            tatTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccacgtcc        <  1:2015033‑M2/150‑29 (MQ=255)              tttCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccacgtcccg      <  1:1923832‑M2/150‑31 (MQ=255)                  cAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccacgtcccgtcag  <  1:1420380‑M2/150‑35 (MQ=255)                  cAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccacgtcccgtcag  <  1:1746588‑M2/150‑35 (MQ=255)                  cAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccacgtcccgtcag  <  1:943607‑M2/150‑35 (MQ=255)                  cAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATttcatcccgccaatattttcccacgtcccgtcag  <  1:943608‑M2/150‑35 (MQ=255)                                                                                                                                     |                                   ATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCA  >  Xen14_25/73104‑73240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.