| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_117 | = 77 | 43 (0.480) | 34 (0.420) | 27/292 | 2.3 | 32.5% | intergenic (–/+1345) | –/nleF | –/Effector protein NleF |
| ? | Xen14_7 | 136257 = | 99 (1.320) | coding (569/651 nt) | zinT | Metal‑binding protein ZinT | |||||
ACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_117/5‑77‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC > Xen14_7/136257‑136403 ACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGACATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGACGAAGTGGTCGAGGAGATGATGTCT > 1:3066668/1‑150 GCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTT > 1:1350740/1‑150 ACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTC > 1:2692887/1‑150 TAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACCTCAGTT < 1:1819803/150‑1 ATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTAT < 1:1675395/150‑1 ATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTAT > 1:3389322/1‑150 TTACCAAGACAAATAAGTAAGAAAAACTCTGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTT > 1:1129587/1‑150 ACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAA > 1:1949768/1‑150 ACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAA < 1:353975/150‑1 AGACAAATAAGTAAGAAAAACTCATACACGCTCATTGAATGAAATGGAAAACTTGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGA < 1:4080507/150‑1 GACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTAGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAA > 1:4089172/1‑150 ACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAAC < 1:1766074/150‑1 AATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGT > 1:376817/1‑150 AATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGT > 1:376813/1‑150 GTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCATTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTG < 1:671593/150‑1 GTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAGGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTG > 1:3987884/1‑150 GTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTG < 1:671592/150‑1 AAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAATGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGT < 1:3246978/150‑1 AGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTA > 1:905993/1‑150 AGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTA > 1:2158656/1‑150 GAAAGACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAG < 1:2730877/150‑1 GAAAGACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAG < 1:2730876/150‑1 AAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATATCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGT > 1:367381/1‑150 aaagCTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGA < 1:2318163/112‑1 AAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTA < 1:4032136/150‑1 AAAACTCAGACACGCTCATTGAATAAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGA < 1:2318162/116‑1 AAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAA > 1:3881064/1‑150 acccCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAAC < 1:3036942/146‑1 ACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACA > 1:271351/1‑150 CACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAA < 1:2304238/150‑1 ACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAAT < 1:982605/150‑1 CATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTNGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGNACANTGCCTGGTAGTAACAACTATAATTTACC < 1:3723851/150‑1 CATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC < 1:1299112/150‑1 CATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTCGATTAGCGAAGAAGTGTGCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC < 1:3974086/150‑1 ACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_117/5‑77‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC > Xen14_7/136257‑136403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |