| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_168 | 1 = | 0 (0.000) | 47 (0.060) | 34/242 | 1.6 | 100% | intergenic (–/+59) | –/Xen14_04774 | –/IS200/IS605 family transposase IS200C |
| ? | Xen14_67 | 28 = | 0 (0.000) | intergenic (–/‑63) | –/gltJ | –/Glutamate/aspartate import permease protein GltJ | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGCTT > Xen14_67/1‑176 | gattccctatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATATGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATGTTTATTc > 1:3823612‑M2/100‑150 (MQ=255) ccctatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGa > 1:1487336‑M2/96‑150 (MQ=255) cctatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAg > 1:2765833‑M2/95‑150 (MQ=255) cctatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAg < 1:2570746‑M2/56‑1 (MQ=255) cctatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAg < 1:189848‑M2/56‑1 (MQ=255) catccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTa > 1:1350833‑M2/93‑150 (MQ=255) atccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAg < 1:3985908‑M2/59‑1 (MQ=255) tccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACGTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGa < 1:2081057‑M2/60‑1 (MQ=255) ccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGAt > 1:1419064‑M2/90‑150 (MQ=255) ccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGAt < 1:3133127‑M2/61‑1 (MQ=255) cagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATg < 1:2841148‑M2/66‑1 (MQ=255) cagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATg > 1:1012811‑M2/85‑150 (MQ=255) gcccgtttacgtgccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTc > 1:190411‑M2/83‑150 (MQ=255) gcccgtttacgtgccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTc > 1:190412‑M2/83‑150 (MQ=255) cccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCt > 1:2127333‑M2/82‑150 (MQ=255) cgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCtat > 1:1713526‑M2/80‑150 (MQ=255) tttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctgataagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAg < 1:2457531‑M2/73‑1 (MQ=255) acgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgctagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACt > 1:3466806‑M2/75‑150 (MQ=255) gggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgtggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATCTATTCTGGAGTAGATTTATGTCTATAGACTgg < 1:2174166‑M2/78‑1 (MQ=255) ggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGa < 1:2717050‑M2/79‑1 (MQ=255) ggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGa < 1:2986435‑M2/79‑1 (MQ=255) gccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCTGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGaa > 1:3281582‑M2/71‑150 (MQ=255) taagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTgg > 1:2991567‑M2/67‑150 (MQ=255) aagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTggg > 1:3212376‑M2/66‑150 (MQ=255) aagtaacgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTAGGTCTATAGACTGGAACTggg < 1:2853800‑M2/85‑1 (MQ=255) cgaagttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAttt > 1:3699540‑M2/60‑150 (MQ=255) gaagttggatgcaaatgccagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCACTTGAAAAACCTCCGGCTACGCCAGAGGCTCTTTATTCTAGAGTAGATTTATGTCTCTAGACTGGAACTGGGGTAtttt > 1:4183982‑M2/59‑150 (MQ=255) agttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAtttttt < 1:3938081‑M2/94‑1 (MQ=255) gttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAttttttt > 1:373339‑M2/56‑150 (MQ=255) gttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAttttttt < 1:613770‑M2/95‑1 (MQ=255) gatggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAttttttt < 1:1649548‑M2/95‑1 (MQ=255) ttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTa < 1:559344‑M2/96‑1 (MQ=255) ttggatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTa < 1:2630163‑M2/96‑1 (MQ=255) ttggatgcaaatgtcagagcgtgtgcgcatgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCAGTAGGATATTTATGCTGGAGTAGATTGATGTCTATAGACTGGAACTGGGGTATTTTTTTa < 1:2443499‑M2/96‑1 (MQ=255) gatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTacaa < 1:261004‑M2/99‑1 (MQ=255) gatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTacaa < 1:261001‑M2/99‑1 (MQ=255) gatgcaaatgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTacaa < 1:1540600‑M2/99‑1 (MQ=255) caaatgtcagatcgtgtgcgcctggtagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTa < 1:3770373‑M2/96‑1 (MQ=255) atgtcagatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGccc > 1:1439479‑M2/45‑150 (MQ=255) agatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTAtttttt < 1:1897681‑M2/94‑1 (MQ=255) gatcgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTc > 1:2493520‑M2/39‑149 (MQ=255) cgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCa > 1:401420‑M2/36‑150 (MQ=255) cgtgtgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCa < 1:3256230‑M2/115‑1 (MQ=255) tgcgtctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAacac < 1:3729097‑M2/119‑1 (MQ=255) tgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAacac < 1:3342532‑M2/119‑1 (MQ=255) tgcgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAacac < 1:3729131‑M2/119‑1 (MQ=255) cgcctgttagggcgcggctggtaagagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAAcacca > 1:388630‑M2/30‑150 (MQ=255) gggCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCttg > 1:2091821/1‑150 (MQ=255) gggCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCttg < 1:2171507/150‑1 (MQ=255) gCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGAt < 1:3037004/150‑1 (MQ=255) cTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATc < 1:1548323/150‑1 (MQ=255) tGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAAATGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACATATCTTGGTTGGATCt > 1:4019419/1‑150 (MQ=255) gTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTgg > 1:2806842/1‑150 (MQ=255) tAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGa < 1:3711357/150‑1 (MQ=255) gagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTg > 1:2770649/1‑150 (MQ=255) gagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTg > 1:2770651/1‑150 (MQ=255) gagagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTg > 1:2770650/1‑150 (MQ=255) gagCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGc > 1:2903021/1‑150 (MQ=255) agCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGCt < 1:1727066/150‑1 (MQ=255) agCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGCt < 1:1727065/150‑1 (MQ=255) gCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGCtt > 1:1640561/1‑150 (MQ=255) gCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGCtt > 1:1032106/1‑150 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTCTGGAGTAGATTTATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAGTGGCTT > Xen14_67/1‑176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |