New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_118	3283 =	NA (NA)	27 (0.330)	18/296	2.3	28.7%	intergenic (+24/–)	agp/–	Glucose‑1‑phosphatase/–
	?	Xen14_43	39549 =	67 (0.630)					intergenic (‑13/+372)	yhdJ_2/Xen14_03575	DNA adenine methyltransferase YhdJ/hypothetical protein

GATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑‑‑  >  Xen14_118/3134‑3355                                                                                                                                                      |                                                                                   gATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGcc                                                                                    >  1:1662812/1‑150 (MQ=255) gATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGcc                                                                                    >  1:4188572/1‑150 (MQ=255)   tGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGAGGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTg                                                                                  <  1:3827006/150‑1 (MQ=255)     cGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGtc                                                                                >  1:3064077/1‑150 (MQ=255)     cGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGtc                                                                                >  1:2325717/1‑150 (MQ=255)     cGTTAACCCTGCAGGCACCTGCGCAGCGCATGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGtc                                                                                >  1:2113570/1‑150 (MQ=255)      gTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGtct                                                                               >  1:3937835/1‑150 (MQ=255)       ttAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGtctc                                                                              <  1:1818110/150‑1 (MQ=255)            ccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtatg                                                                         >  1:3066542/1‑149 (MQ=255)            ccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtata                                                                         >  1:512544/1‑150 (MQ=255)            ccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtata                                                                         >  1:2514572/1‑150 (MQ=255)             cTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATac                                                                        <  1:339166/150‑1 (MQ=255)                cAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATAcaca                                                                     <  1:3393592/150‑1 (MQ=255)                cAGGCACCTGCGCAGCACGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATAcaca                                                                     <  1:1836305/150‑1 (MQ=255)                      ccTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccc                                                               >  1:953466/1‑150 (MQ=255)                      ccTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccc                                                               >  1:155805/1‑150 (MQ=255)                      ccTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccc                                                               >  1:953467/1‑150 (MQ=255)                       cTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCATGTCTCTTATACACAAATcccc                                                              >  1:4210023/1‑150 (MQ=255)                         gcgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAc                                                            >  1:3125717/1‑150 (MQ=255)                              gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                       <  1:2967540/150‑1 (MQ=255)                               cgcgTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTT‑GCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCTCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGa                                                     >  1:1835655/1‑150 (MQ=255)                                gcgTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGCGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGa                                                     >  1:487833/1‑150 (MQ=255)                                 cgTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGAt                                                    >  1:1773412/1‑150 (MQ=255)                                       gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGa                                              >  1:2969424/1‑150 (MQ=255)                                       gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGa                                              >  1:2969425/1‑150 (MQ=255)                                       gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGCGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGa                                              >  1:1616074/1‑150 (MQ=255)                                           gAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtgtc                                          >  1:1353463/1‑150 (MQ=255)                                             aTTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAt                                             <  1:1691699/145‑1 (MQ=255)                                               tAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                           <  1:3026429/129‑1 (MQ=255)                                                 aGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAg                                    <  1:2848689/150‑1 (MQ=255)                                                       tGCCCGATAGATGCCAACAGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCt                              >  1:1403957/1‑150 (MQ=255)                                                          ccGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTa                           <  1:3074053/150‑1 (MQ=255)                                                              tAGATGCCAACGGTTTTCGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAgggg                       <  1:2185884/150‑1 (MQ=255)                                                                gATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGa                     <  1:640122/150‑1 (MQ=255)                                                                                 cccAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtag    <  1:2920590/150‑9 (MQ=255)                                                                                   cAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGACATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtagtt  >  1:2552250/1‑140 (MQ=255)                                                                                   cAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtagtt  >  1:239843/1‑140 (MQ=255)                                                                                                                                                      |                                                                                   GATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑‑‑  >  Xen14_118/3134‑3355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.