New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_20	75208 =	116 (1.180)	153 (1.080)	28/296	3.0	56.9%	coding (438/735 nt)	Xen14_02292	hypothetical protein
	?	Xen14_54	= 41	NA (NA)					intergenic (–/‑50)	–/hokA	–/Protein HokA

AGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATAT  >  Xen14_54/1‑188                                         |                                                                                                                                                    aGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTc                                        <  1:745643/150‑1 (MQ=255) aGATGCTGCATTTGCATAGTACAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTc                                        <  1:745645/150‑1 (MQ=255)  gATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCa                                       <  1:3137080/150‑1 (MQ=255)  gATGCTGCAGTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCa                                       <  1:619255/150‑1 (MQ=255)     gctgcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGGTTTGTTTCACGCTTTTATTTTTCACCt                                    >  1:2567943/1‑150 (MQ=255)      ctgcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTg                                   >  1:657650/1‑150 (MQ=255)        gcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACATACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGga                                 >  1:2869339/1‑150 (MQ=255)          aTTTGCATAGTGCAATCNCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGgatg                               >  1:3713441/1‑150 (MQ=255)             tGCATAGTGCGATCTCCCCTTACTTATCCGGAGGCAATTGCACTATCTCTTTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATGTTTCACCTGGATGATa                            <  1:4253069/150‑1 (MQ=38)               cATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                          <  1:2447406/150‑1 (MQ=255)               cATAGTGCAATCTCCCCTTACTTATCAGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                          >  1:2009636/1‑150 (MQ=255)               cATAGTGCAATCTCCCCTTACTTATCAGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                          >  1:2009638/1‑150 (MQ=255)                 tAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAagag                        <  1:2880698/150‑1 (MQ=255)                  aGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAagag                        <  1:1226702/149‑1 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTATACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGAt                      >  1:3316400/1‑150 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTgaat                                >  1:1472420/1‑137 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGgat                                >  1:118974/1‑140 (MQ=255)                    tGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTAGATGATAAGAGAtt                     <  1:3857660/150‑1 (MQ=255)                     gCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTc                    <  1:3925916/150‑1 (MQ=255)                      cAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCa                   <  1:3355665/150‑1 (MQ=255)                       aaTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCAc                  >  1:1659633/1‑150 (MQ=255)                        aTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                 <  1:1404541/150‑1 (MQ=255)                          ctcCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgt               >  1:3746603/1‑150 (MQ=255)                           tcCCCTTACTTATCCTGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtg              <  1:4118521/150‑1 (MQ=255)                           tcCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtg              <  1:365254/150‑1 (MQ=255)                           tcCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtg              <  1:365259/150‑1 (MQ=255)                           tcCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTCAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtg              <  1:3164115/150‑1 (MQ=255)                            ccccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATGTAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtgt             <  1:3361821/150‑1 (MQ=255)                            ccccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtgt             >  1:2707895/1‑150 (MQ=255)                             cccTTACTTATCCGGAGGCGATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtgtg            <  1:1568857/150‑1 (MQ=255)                             cccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtgtg            <  1:3767776/150‑1 (MQ=255)                                ttacttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAGTGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAAt         <  1:2713196/150‑1 (MQ=255)                                ttacttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAAt         <  1:2713197/150‑1 (MQ=255)                                  acttaTCCGGAGGCAATTGCAATATCTCTGTGGACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTg       <  1:2510664/150‑1 (MQ=255)                                  acttaTCCGGAGGCAATTGCAATATCTCTGTGGACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTg       <  1:2510663/150‑1 (MQ=255)                                  acttaTCCGGAGGCAATTGCAATATCTCTGTGGACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTg       <  1:2510662/150‑1 (MQ=255)                                   cttaTCCGGAGGCAATTGCAATATCTCTGCGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGc      >  1:928639/1‑150 (MQ=255)                                     taTCCGGAGGCAGTTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGc                                                   <  1:3007804/103‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGTATGATAAGAGATTCACTGTGTGAATTGCat    <  1:279685/150‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTc                    >  1:1817824/1‑134 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat    <  1:1177318/150‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat    <  1:281300/150‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat    <  1:1177320/150‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGACGATAAGAGATTCACTGTGTGAATTGCat    <  1:262812/150‑1 (MQ=255)                                      aTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCata   <  1:3691434/150‑1 (MQ=255)                                      aTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCata   >  1:650979/1‑150 (MQ=255)                                      aTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAAGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGCGTGAATTGCata   >  1:3656536/1‑150 (MQ=255)                                       tCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCatat  >  1:3118511/1‑150 (MQ=255)                                         |                                                                                                                                                    AGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATAT  >  Xen14_54/1‑188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.