New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_12	= 188	107 (1.290)	54 (0.410)	28/296	2.5	33.5%	intergenic (–/+140)	–/Xen14_01540	–/hypothetical protein
	?	Xen14_68	16331 =	NA (NA)					intergenic (+51/–)	rph/–	Ribonuclease PH/–

AGCCGTTTACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAC‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_68/16183‑16382                                                                                                                                                     |                                                                aGCCGTTTACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAg                                                                >  1:4033131/1‑150 (MQ=255)     gTTTACCCATGAAGAGCTCCTCACCTTGTTTGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAAGTGATTTTTCAGGCGACTGATGAGTCGCCTTTTTTTTGTGCGCAGAAAACCCCCAGC‑TAg                                                           >  1:4225187/1‑150 (MQ=255)      tttACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAgg                                                          <  1:3455445/150‑1 (MQ=255)       ttACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGATGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGc                                                         <  1:1260651/150‑1 (MQ=255)          cccATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTgg                                                      >  1:742961/1‑150 (MQ=255)          cccATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTgg                                                      >  1:4149781/1‑150 (MQ=255)          cccATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTgg                                                      >  1:3789948/1‑150 (MQ=255)            cATGAAGAGCTACTCACCTTGTTGGCGTTGGCCCGAGGGGGAATTAAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTGTGTGCACAAAAAACCCCCAGC‑TAGGCTgggg                                                    <  1:1048706/150‑1 (MQ=255)              tGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGt                                                  >  1:2497495/1‑150 (MQ=255)              tGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGt                                                  >  1:1907724/1‑150 (MQ=255)              tGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGt                                                  >  1:1907725/1‑150 (MQ=255)               gAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCAATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGtt                                                 >  1:3775175/1‑150 (MQ=255)                aaGAACTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTc                                                <  1:2886043/150‑1 (MQ=255)                      tACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGCCTAG‑CTGGGGGtttt                                               <  1:6010/145‑3 (MQ=255)                       aCTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAg                                         >  1:2987477/1‑150 (MQ=255)                         tCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCt                                       >  1:81011/1‑150 (MQ=255)                          cACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCtt                                      >  1:3866102/1‑150 (MQ=255)                            ccTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTc                                    <  1:571422/150‑1 (MQ=255)                            ccTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTc                                    <  1:1719643/150‑1 (MQ=255)                            ccTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTc                                    <  1:1719640/150‑1 (MQ=255)                               tgttgGCGCTGGCCCGAGGGGGAATCGACTCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAAATGATTTTTAAGGCGACTGAGGAGTCGCCTTTTTTTTGTGCACAGAAAACACCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTccgc                                 >  1:2615212/1‑147 (MQ=38)                               tgttgGCGCTGGCCCGAGGGAGAATCGAACCCATTGTAGCGACGCAGAAGGTGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAAAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGc                                 <  1:2235077/150‑1 (MQ=38)                                gttgGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCt                                >  1:2476925/1‑150 (MQ=255)                                 ttgGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGTTTTCAGCtt                               >  1:3298053/1‑150 (MQ=255)                                     cgcTGGCCCGAGTGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCATAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAg                           <  1:3601567/150‑1 (MQ=255)                                     cgcTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCCGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAg                           >  1:3430076/1‑150 (MQ=255)                                     cgcTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAg                           <  1:1728825/150‑1 (MQ=255)                                      gcTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGc                          >  1:2873774/1‑150 (MQ=255)                                       cTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGcc                         >  1:1626664/1‑150 (MQ=255)                                         ggCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAg                       >  1:1046751/1‑150 (MQ=255)                                         ggCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAg                       >  1:1046752/1‑150 (MQ=255)                                           cccGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGtt                     >  1:3729106/1‑150 (MQ=255)                                             cGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTAATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGttat                   <  1:3787391/150‑1 (MQ=255)                                               aGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGttatta                 <  1:3922809/150‑1 (MQ=255)                                                gggggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTaa                >  1:2331255/1‑150 (MQ=255)                                                  gggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTaaaa              >  1:1273482/1‑150 (MQ=255)                                                   ggAATCGAATCCATTGTAGCTACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAc             <  1:1375277/150‑1 (MQ=255)                                                   ggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAc             >  1:3548040/1‑150 (MQ=255)                                                   ggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAc             <  1:106362/150‑1 (MQ=255)                                                   ggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAc             >  1:2491381/1‑150 (MQ=255)                                                   ggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAc             <  1:1375276/150‑1 (MQ=255)                                                   ggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAc             >  1:3548041/1‑150 (MQ=255)                                                   ggAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTCGAGCCAGTTATTAAAAc             <  1:3298843/150‑1 (MQ=255)                                                    gaatcgaatcCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAcc            <  1:3827878/150‑2 (MQ=255)                                                        cgaatcCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAcccctt        <  1:1801022/150‑6 (MQ=255)                                                           atcCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAccccttttg     >  1:4032501/1‑142 (MQ=255)                                                           atcCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGAAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAccccttttg     >  1:1962721/1‑142 (MQ=255)                                                           atcCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCATTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCGTTGAGCCAGTTATTAAAAccccttttg     >  1:4032502/1‑142 (MQ=21)                                                             ccATTGTAGCGACGCAGAATGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTGTTTTTTGTGCACAAAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAccccttttgat   <  1:3890974/150‑11 (MQ=21)                                                              cATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAccccttttgatt  <  1:1623372/150‑12 (MQ=255)                                                                                                                                                     |                                                                AGCCGTTTACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTTTTTTTTGTGCACAGAAAACCCCCAGC‑TAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTGAGCCAGTTATTAAAAC‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_68/16183‑16382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.