mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 4,364 | C→T | intergenic (‑9/‑179) | unknown ← / → unknown | SAM‑dependent methyltransferase HI0095 (UbiE paralog)/Superoxide dismutase [Cu‑Zn] precursor (EC 1.15.1.1) |
| RA | 8,758 | T→A | intergenic (+148/+72) | unknown → / ← unknown | NAD‑dependent malic enzyme (EC 1.1.1.38)/Uncharacterized protein YhiN |
| RA | 9,813 | T→C | M73V (ATG→GTG) | unknown ← | Uncharacterized protein YhiN |
| RA | 11,294 | T→C | P103P (CCA→CCG) | unknown ← | Cytochrome c‑type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
| RA | 12,908 | C→T | E200K (GAA→AAA) | unknown ← | Cytochrome c‑type heme lyase subunit nrfE, nitrite reductase complex assembly |
| RA | 17,305 | G→C | A229G (GCG→GGG) | unknown ← | Cytochrome c552 precursor (EC 1.7.2.2) |
| RA | 20,737 | G→A | P91L (CCA→CTA) | unknown ← | Cytochrome c heme lyase subunit CcmL |
| MC JC | 27,211 | (TTTC)2→1 | intergenic (‑369/+92) | unknown ← / ← unknown | Multidrug resistance transporter => Bicyclomycin resistance protein Bcr‑1/hypothetical protein |
| RA | 58,048 | T→C | R91R (CGT→CGC) | unknown → | Type IV pilus biogenesis protein PilF |
| RA | 70,844 | G→T | A108S (GCC→TCC) | unknown → | Dca |
| RA | 77,012 | T→C | L370L (TTA→TTG) | unknown ← | Copper‑translocating P‑type ATPase (EC 3.6.3.4) |
| RA | 78,945 | C→T | intergenic (+44/‑248) | unknown → / → unknown | Transcriptional regulator, MerR family/Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72) |
| RA | 78,960 | C→T | intergenic (+59/‑233) | unknown → / → unknown | Transcriptional regulator, MerR family/Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72) |
| MC JC | 79,058 | (GAAGCCA)4→2 | intergenic (+157/‑122) | unknown → / → unknown | Transcriptional regulator, MerR family/Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72) |
| RA | 79,478 | T→C | intergenic (+1/‑22) | unknown → / → unknown | Type I restriction‑modification system, DNA‑methyltransferase subunit M (EC 2.1.1.72)/Type I restriction‑modification system, restriction subunit R (EC 3.1.21.3) |
| RA | 85,738 | C→T | S93S (AGC→AGT) | unknown → | TldE protein, part of TldE/TldD proteolytic complex |
| RA | 87,018 | (T)8→9 | intergenic (+197/‑42) | unknown → / → unknown | TldE protein, part of TldE/TldD proteolytic complex/Hypoxanthine‑guanine phosphoribosyltransferase (EC 2.4.2.8) |
| RA | 89,985 | G→A | A32V (GCG→GTG) | unknown ← | D‑glycerate transporter (predicted) |
| RA | 96,293 | T→C | K358E (AAG→GAG) | unknown ← | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) |
| RA | 115,056 | G→A | R6W (CGG→TGG) | unknown ← | hypothetical protein |
| RA | 124,314 | C→T | intergenic (‑8/+93) | unknown ← / ← unknown | Der GTPase‑activating protein YihI/tRNA‑specific adenosine‑34 deaminase (EC 3.5.4.33) |
| RA | 129,387 | C→T | T142M (ACG→ATG) | unknown → | Ribose ABC transporter, ATP‑binding protein RbsA (TC 3.A.1.2.1) |
| RA | 132,030 | A→G | M193V (ATG→GTG) | unknown → | Ribose ABC transporter, substrate‑binding protein RbsB (TC 3.A.1.2.1) |
| RA | 135,873 | (G)7→6 | noncoding (48/77 nt) | unknown → | tRNA‑Val‑TAC |
| RA | 135,970 | T→C | noncoding (30/76 nt) | unknown → | tRNA‑Val‑TAC |
| RA | 140,424 | C→T | intergenic (+267/‑222) | unknown → / → unknown | NADP‑specific glutamate dehydrogenase (EC 1.4.1.4)/Catalase KatE (EC 1.11.1.6) |
| RA | 141,515 | A→G | P290P (CCA→CCG) | unknown → | Catalase KatE (EC 1.11.1.6) |
| RA | 152,672 | G→T | D1213Y (GAT→TAT) | unknown → | Autotransporter adhesin |
| RA | 157,486 | C→T | intergenic (+173/‑8) | unknown → / → unknown | Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)/hypothetical protein |
| RA | 157,749 | G→A | intergenic (+136/+7) | unknown → / ← unknown | hypothetical protein/hypothetical protein |
| RA | 165,841 | G→A | H61H (CAC→CAT) | unknown ← | Septum‑associated rare lipoprotein A |
| RA | 173,700 | T→C | *179W (TAG→TGG) | unknown ← | Uncharacterized MFS‑type transporter |
| RA | 175,178 | A→G | N175N (AAT→AAC) | unknown ← | 3‑oxoacyl‑[acyl‑carrier protein] reductase (EC 1.1.1.100), FadG |
| RA | 182,278 | C→T | V176M (GTG→ATG) | unknown ← | 8‑amino‑7‑oxononanoate synthase (EC 2.3.1.47) |
| RA | 190,241 | A→G | L145P (CTG→CCG) | unknown ← | FIG00696143: hypothetical protein |
| RA | 196,663 | G→T | A35S (GCG→TCG) | unknown → | 3‑oxo‑tetronate kinase |
| RA | 199,402 | C→T | P34L (CCT→CTT) | unknown → | L‑threonate/D‑erythronate, proton symporter |
| RA | 200,370 | C→T | R357C (CGC→TGC) | unknown → | L‑threonate/D‑erythronate, proton symporter |
| RA | 218,866 | G→A | G119G (GGG→GGA) | unknown → | Protein translocase subunit SecE |
| RA | 224,559 | T→C | L754L (CTT→CTC) | unknown → | DNA‑directed RNA polymerase beta subunit (EC 2.7.7.6) |
| RA | 230,734 | G→A | intergenic (+37/+173) | unknown → / ← unknown | DNA‑directed RNA polymerase beta' subunit (EC 2.7.7.6)/Transposase, IS200 family |
| RA | 230,755 | G→A | intergenic (+58/+152) | unknown → / ← unknown | DNA‑directed RNA polymerase beta' subunit (EC 2.7.7.6)/Transposase, IS200 family |
| RA | 237,606 | T→G | intergenic (‑43/‑231) | unknown ← / → unknown | Transcriptional regulator, LysR family/Acyl‑CoA:acetate CoA‑transferase, alpha subunit (EC 2.8.3.8) |
| RA | 247,214 | C→A | G337G (GGC→GGA) | unknown → | Chloride channel protein |
| RA | 273,492 | G→A | D142N (GAT→AAT) | unknown → | Diadenosine tetraphosphatase and related serine/threonine protein phosphatases |
| RA | 276,001 | T→C | intergenic (‑82/+118) | unknown ← / ← unknown | Transposase, IS200 family/LSU ribosomal protein L17p |
| RA | 277,921 | A→G | L90L (TTA→CTA) | unknown ← | SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc‑independent |
| RA | 279,011 | T→C | intergenic (‑32/+110) | unknown ← / ← unknown | SSU ribosomal protein S13p (S18e)/LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc‑dependent |
| RA | 280,574 | Δ1 bp | intergenic (‑55/+16) | unknown ← / ← unknown | Protein translocase subunit SecY/LSU ribosomal protein L15p (L27Ae) |
| RA | 280,785 | G→A | D80D (GAC→GAT) | unknown ← | LSU ribosomal protein L15p (L27Ae) |
| RA | 286,332 | C→T | A322T (GCC→ACC) | unknown ← | CTP synthase (EC 6.3.4.2) |
| JC | 302,765 | +TGTT | coding (158/216 nt) | unknown → | FIG018329: 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | 303,305 | T→G | I162M (ATT→ATG) | unknown → | FIG018329: 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | 304,206 | A→G | H107R (CAC→CGC) | unknown → | (3R)‑hydroxymyristoyl‑[ACP] dehydratase (EC 4.2.1.‑) |
| RA | 323,209 | G→A | A256V (GCG→GTG) | unknown ← | Glucose‑6‑phosphate 1‑dehydrogenase (EC 1.1.1.49) |
| RA | 324,072 | G→A | I265I (ATC→ATT) | unknown ← | 3'(2'),5'‑bisphosphate nucleotidase (EC 3.1.3.7) |
| RA | 330,230 | A→G | K84E (AAA→GAA) | unknown → | GMP/IMP nucleotidase YrfG |
| RA | 346,554 | G→T | T137K (ACA→AAA) | unknown ← | hypothetical protein |
| RA | 350,636 | A→G | L144P (CTG→CCG) | unknown ← | putative TonB‑dependent receptor |
| RA | 351,523 | G→A | intergenic (‑1/+3) | unknown ← / ← unknown | Biopolymer transport protein ExbD/TolR/Ferric siderophore transport system, biopolymer transport protein ExbB |
| RA | 380,976 | T→C | P22P (CCA→CCG) | unknown ← | Excinuclease ABC subunit A |
| RA | 384,689 | T→C | P409P (CCA→CCG) | unknown ← | Type IV pilus biogenesis protein PilQ; Competence protein E |
| RA | 387,718 | C→A | A157S (GCG→TCG) | unknown ← | Type IV pilus biogenesis protein PilM; Competence protein A |
| RA | 400,345 | T→G | N259H (AAT→CAT) | unknown ← | COG0859: ADP‑heptose:LPS heptosyltransferase |
| RA | 402,614 | G→A | T90T (ACG→ACA) | unknown → | Lipooligosaccharide biosynthesis protein lex‑1 (EC 2.‑.‑.‑) |
| RA | 406,224 | T→G | F307L (TTT→TTG) | unknown → | Helicase PriA essential for oriC/DnaA‑independent DNA replication |
| RA | 420,573 | C→A | D41Y (GAT→TAT) | unknown ← | FIG00003370: Multicopper polyphenol oxidase |
| JC | 426,031 | (AAAAT)1→2 | coding (97/156 nt) | unknown ← | hypothetical protein |
| RA | 426,309 | A→G | intergenic (+50/‑4) | unknown → / → unknown | hypothetical protein/SSU ribosomal protein S16p |
| RA | 447,426 | A→G | A282A (GCT→GCC) | unknown ← | ADP‑heptose‑‑lipooligosaccharide heptosyltransferase II |
| RA | 454,952 | G→A | A86V (GCG→GTG) | unknown ← | 5'‑nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) |
| RA | 456,461 | G→T | G89G (GGC→GGA) | unknown ← | 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase (EC 4.6.1.12) |
| RA | 468,489 | C→T | P88P (CCG→CCA) | unknown ← | Phosphoglycerate kinase (EC 2.7.2.3) |
| RA | 470,400 | G→A | H211Y (CAC→TAC) | unknown ← | Uncharacterized tRNA/rRNA methyltransferase YfiF |
| RA | 474,201 | C→T | intergenic (‑35/+40) | unknown ← / ← unknown | tRNA‑SeC(p)‑TCA/Xylulose kinase (EC 2.7.1.17) |
| RA | 476,697 | T→C | K129R (AAA→AGA) | unknown ← | Xylose isomerase (EC 5.3.1.5) |
| RA | 476,998 | T→C | T29A (ACC→GCC) | unknown ← | Xylose isomerase (EC 5.3.1.5) |
| RA | 480,788 | T→C | R292R (CGT→CGC) | unknown → | D‑xylose ABC transporter, permease protein XylH |
| RA | 480,811 | T→C | V300A (GTC→GCC) | unknown → | D‑xylose ABC transporter, permease protein XylH |
| RA | 487,688 | G→A | G303D (GGT→GAT) | unknown → | PTS system, mannose‑specific IIA component (EC 2.7.1.191) / PTS system, mannose‑specific IIB component (EC 2.7.1.191) |
| RA | 488,318 | T→C | D176D (GAT→GAC) | unknown → | PTS system, mannose‑specific IIC component |
| RA | 496,025 | A→G | T220T (ACT→ACC) | unknown ← | Type I restriction‑modification system, restriction subunit R (EC 3.1.21.3) |
| RA | 505,268 | G→A | D146D (GAC→GAT) | unknown ← | 16S rRNA (guanine(527)‑N(7))‑methyltransferase (EC 2.1.1.170) |
| RA | 506,901 | A→C | I175I (ATA→ATC) | unknown → | NAD(P)H dehydrogenase (quinone) 2 (EC 1.6.5.2) |
| RA | 508,994 | G→A | R101R (CGC→CGT) | unknown ← | tRNA‑5‑carboxymethylaminomethyl‑2‑ thiouridine(34) synthesis protein MnmG |
| RA | 511,351 | G→A | L233L (TTG→TTA) | unknown → | Fructose‑1,6‑bisphosphatase, GlpX type (EC 3.1.3.11) |
| RA | 517,713 | G→C | S243S (TCG→TCC) | unknown → | Heterodimeric efflux ABC transporter, permease/ATP‑binding subunit 1 |
| RA | 524,986 | T→C | H75H (CAT→CAC) | unknown → | tRNA 5‑methylaminomethyl‑2‑thiouridine synthase subunit TusD |
| RA | 526,276 | G→A | F95F (TTC→TTT) | unknown ← | L‑cystine ABC transporter, ATP‑binding protein TcyC |
| RA | 526,792 | C→T | P154P (CCG→CCA) | unknown ← | L‑cystine ABC transporter, permease protein TcyB |
| RA | 533,871 | A→G | A360A (GCT→GCC) | unknown ← | Anhydro‑N‑acetylmuramic acid kinase (EC 2.7.1.170) |
| RA | 535,939 | A→G | N302D (AAC→GAC) | unknown → | N‑acetylglucosamine‑1‑phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine‑1‑phosphate N‑acetyltransferase (EC 2.3.1.157) |
| RA | 536,536 | C→T | intergenic (+130/+22) | unknown → / ← unknown | N‑acetylglucosamine‑1‑phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine‑1‑phosphate N‑acetyltransferase (EC 2.3.1.157)/Putative exported protein precursor |
| RA | 553,282 | C→A | I29I (ATC→ATA) | unknown → | hypothetical protein |
| RA | 554,687 | A→C | V263V (GTT→GTG) | unknown ← | Phosphatidate cytidylyltransferase (EC 2.7.7.41) |
| RA | 554,761 | T→C | T239A (ACG→GCG) | unknown ← | Phosphatidate cytidylyltransferase (EC 2.7.7.41) |
| RA | 559,599 | T→C | I123V (ATT→GTT) | unknown ← | Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase (EC 2.3.1.129) |
| RA | 563,298 | G→T | G449G (GGC→GGA) | unknown ← | Outer membrane protein assembly factor YaeT |
| RA | 605,262 | T→C | T293A (ACT→GCT) | unknown ← | ADP‑heptose‑‑lipooligosaccharide heptosyltransferase II |
| RA | 608,195 | T→C | S63G (AGC→GGC) | unknown ← | ADP‑L‑glycero‑D‑manno‑heptose‑6‑epimerase (EC 5.1.3.20) |
| RA | 610,281 | T→C | P273P (CCT→CCC) | unknown → | 5'‑nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) |
| RA | 610,385 | T→C | I308T (ATC→ACC) | unknown → | 5'‑nucleotidase (EC 3.1.3.5); NAD pyrophosphatase, periplasmic (EC 3.6.1.22) |
| RA | 613,405 | C→A | G501C (GGC→TGC) | unknown ← | DNA polymerase I (EC 2.7.7.7) |
| RA | 628,593 | T→C | *387Q (TAG→CAG) | unknown → | USG protein |
| RA | 628,678 | T→C | V19A (GTT→GCT) | unknown → | hypothetical protein |
| RA | 631,527 | T→C | T215T (ACT→ACC) | unknown → | Uncharacterized MFS‑type transporter |
| RA | 660,864 | T→C | S176P (TCG→CCG) | unknown → | Phosphoglucosamine mutase (EC 5.4.2.10) |
| RA | 661,592 | C→T | R418R (CGC→CGT) | unknown → | Phosphoglucosamine mutase (EC 5.4.2.10) |
| RA | 666,474 | G→A | A227T (GCG→ACG) | unknown → | Mobile element protein |
| RA | 668,636 | T→C | S30S (AGT→AGC) | unknown → | hypothetical protein |
| RA | 680,739 | A→G | V567A (GTG→GCG) | unknown ← | VgrG protein |
| RA | 683,646 | G→A | A88T (GCG→ACG) | unknown → | hypothetical protein |
| JC | 686,834 | +ATT | coding (223/351 nt) | unknown ← | hypothetical protein |
| RA | 687,605 | G→A | A476A (GCC→GCT) | unknown ← | hypothetical protein |
| RA | 693,833 | G→A | intergenic (‑23/+12) | unknown ← / ← unknown | Methionine ABC transporter substrate‑binding protein/Methionine ABC transporter permease protein |
| RA | 704,090 | T→C | S85P (TCA→CCA) F3F (TTT→TTC) |
unknown → unknown → |
hypothetical protein Mobile element protein |
| RA | 704,243 | A→G | K54K (AAA→AAG) | unknown → | Mobile element protein |
| RA | 709,956 | G→A | A75T (GCG→ACG) | unknown → | Heat shock protein 10 kDa family chaperone GroES |
| RA | 717,030 | T→C | R436R (CGA→CGG) | unknown ← | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase (EC 2.1.1.190) |
| RA | 718,390 | T→C | K212K (AAA→AAG) | unknown ← | DNA recombination and repair protein RecO |
| RA | 720,669 | T→C | N127D (AAC→GAC) | unknown ← | SSU ribosomal protein S2p (SAe) |
| RA | 724,765 | T→C | C172R (TGC→CGC) | unknown → | Orotate phosphoribosyltransferase (EC 2.4.2.10) |
| RA | 725,966 | T→C | V37A (GTG→GCG) | unknown → | tRNA‑dihydrouridine(16) synthase |
| RA | 726,475 | G→A | A131T (GCG→ACG) | unknown → | tRNA‑dihydrouridine(16) synthase |
| RA | 738,061 | A→G | S95G (AGC→GGC) | unknown → | Na(+)‑translocating NADH‑quinone reductase subunit B (EC 1.6.5.8) |
| RA | 762,130 | G→A | G224S (GGT→AGT) | unknown → | Copper‑sensing two‑component system response regulator CpxR |
| RA | 765,925 | G→T | T119N (ACC→AAC) | unknown ← | Inner membrane protein YihY, formerly thought to be RNase BN |
| RA | 769,124 | T→C | intergenic (+78/‑311) | unknown → / → unknown | Uncharacterized protein YjgR/Tetracenomycin polyketide synthesis O‑methyltransferase TcmP |
| RA | 769,973 | C→T | S180L (TCG→TTG) | unknown → | Tetracenomycin polyketide synthesis O‑methyltransferase TcmP |
| RA | 771,326 | G→A | intergenic (‑156/‑193) | unknown ← / → unknown | Transcriptional regulator, LysR family/Inner membrane protein forms channel for type IV secretion of T‑DNA complex, VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB4 |
| RA | 772,169 | G→C | T217T (ACG→ACC) | unknown → | Inner membrane protein forms channel for type IV secretion of T‑DNA complex, VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB4 |
| RA | 774,772 | T→C | V80A (GTA→GCA) | unknown → | hypothetical protein |
| RA | 775,897 | G→A | L185L (CTG→CTA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 775,927 | A→G | L195L (CTA→CTG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 775,930 | C→G | G196G (GGC→GGG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 775,936 | C→T | I198I (ATC→ATT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 775,945 | T→C | T201T (ACT→ACC) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 775,975 | T→C | N211N (AAT→AAC) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 775,999 | T→C | S219S (AGT→AGC) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,011 | C→T | N223N (AAC→AAT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,014 | C→T | G224G (GGC→GGT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,026 | A→G | T228T (ACA→ACG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,029 | A→T | A229A (GCA→GCT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,041 | A→G | L233L (CTA→CTG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,047 | C→T | S235S (TCC→TCT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,051 | T→C | L237L (TTA→CTA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,056 | G→A | R238R (CGG→CGA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,062 | G→A | K240K (AAG→AAA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,065 | T→G | P241P (CCT→CCG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,075 | C→T | L245L (CTG→TTA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,077 | G→A | L245L (CTG→TTA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,080 | T→G | L246L (CTT→CTG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,250 | A→G | H303R (CAC→CGC) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,281 | C→T | I313I (ATC→ATT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,284 | G→T | V314V (GTG→GTT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,302 | C→T | H320H (CAC→CAT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,306 | T→C | Y322H (TAC→CAC) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,317 | T→C | H325H (CAT→CAC) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,347 | C→T | A335A (GCC→GCT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,356 | C→T | N338N (AAC→AAT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,359 | T→G | S339S (TCT→TCG) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,368 | G→A | V342V (GTG→GTA) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,370 | A→G | D343G (GAT→GGT) | unknown → | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| RA | 776,375 | 2 bp→TG | intergenic (+1/‑1) | unknown → / → unknown | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11/Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,419 | A→C | I15L (ATT→CTT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,436 | T→A | L20L (CTT→CTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,438 | 2 bp→GT | coding (62‑63/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,709 | T→C | L111L (CTT→CTC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,721 | T→G | L115L (CTT→CTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,724 | T→C | L116L (CTT→CTC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,727 | C→T | R117R (CGC→CGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,739 | A→G | A121A (GCA→GCG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,745 | C→T | F123F (TTC→TTT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,751 | 2 bp→AC | coding (375‑376/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,757 | C→A | A127A (GCC→GCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,760 | A→G | A128A (GCA→GCG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,766 | C→A | T130T (ACC→ACA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,769 | A→G | R131R (CGA→CGG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,772 | T→A | G132G (GGT→GGA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,775 | G→T | G133G (GGG→GGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,779 | G→A | G135S (GGA→AGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,781 | 2 bp→CG | coding (405‑406/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,793 | C→T | V139V (GTC→GTT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,796 | A→T | I140I (ATA→ATT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,799 | G→A | P141P (CCG→CCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,805 | 2 bp→GC | coding (429‑430/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,808 | A→G | L144M (TTA→CTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,810 | 2 bp→CA | coding (434‑435/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,815 | C→G | Q147E (CAA→GAA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,823 | A→T | S149S (TCA→TCT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,826 | T→G | V150V (GTT→GTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,835 | A→G | K153K (AAA→AAG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,838 | 2 bp→CA | coding (462‑463/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,853 | T→C | C159C (TGT→TGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,859 | C→T | R161R (CGC→CGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,862 | T→C | I162I (ATT→ATC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,874 | C→T | Y166Y (TAC→TAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,877 | T→A | R167R (CGT→CGA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,889 | G→A | L171L (TTG→TTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,898 | A→G | K174K (AAA→AAG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,901 | C→A | V175V (GTC→GTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,916 | A→G | P180P (CCA→CCG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,928 | C→T | N184N (AAC→AAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,937 | A→G | R187R (CGA→CGG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,946 | 2 bp→GC | coding (570‑571/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,973 | A→G | R199R (CGA→CGG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 776,976 | A→G | A200A (GCA→GCG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,006 | A→T | A210A (GCA→GCT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,066 | A→G | Q230Q (CAA→CAG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,078 | G→A | V234V (GTG→GTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,123 | T→C | T249T (ACT→ACC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,131 | C→T | T252I (ACA→ATA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,138 | T→C | T254T (ACT→ACC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,141 | C→T | Y255Y (TAC→TAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,151 | C→T | L259L (CTA→TTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,156 | T→C | R260R (CGT→CGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,162 | C→T | H262H (CAC→CAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,165 | A→C | A263A (GCA→GCC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,174 | C→T | D266D (GAC→GAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,180 | G→T | T268T (ACG→ACT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,192 | G→T | G272G (GGG→GGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,195 | A→G | S273S (TCA→TCG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,216 | G→A | A280A (GCG→GCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,222 | C→T | H282H (CAC→CAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,228 | G→C | R284R (CGG→CGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,258 | A→G | Q294Q (CAA→CAG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,264 | C→T | T296T (ACC→ACT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,297 | C→T | C307C (TGC→TGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,318 | T→C | S314S (AGT→AGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,333 | T→C | T319T (ACT→ACC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,338 | C→T | T321I (ACC→ATC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,376 | C→T | H334Y (CAT→TAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,522 | T→C | D382D (GAT→GAC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,543 | G→A | P389P (CCG→CCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,545 | A→C | K390T (AAA→ACA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,570 | C→A | L398L (CTC→CTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,588 | G→C | A404A (GCG→GCC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,636 | C→T | G420G (GGC→GGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,660 | C→T | I428I (ATC→ATT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,741 | T→C | I455I (ATT→ATC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,756 | G→A | L460L (CTG→CTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,762 | T→A | A462A (GCT→GCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,771 | T→C | N465N (AAT→AAC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,780 | T→C | D468D (GAT→GAC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,820 | G→A | D482N (GAT→AAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,840 | C→A | R488R (CGC→CGA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,843 | A→T | G489G (GGA→GGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,849 | T→A | T491T (ACT→ACA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,873 | C→T | H499H (CAC→CAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,876 | A→G | G500G (GGA→GGG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,882 | G→A | P502P (CCG→CCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,885 | G→A | L503L (TTG→TTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,900 | A→G | E508E (GAA→GAG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,907 | C→T | L511L (CTA→TTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,912 | A→C | I512I (ATA→ATC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,915 | A→C | G513G (GGA→GGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,960 | G→A | M528I (ATG→ATA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,972 | G→A | A532A (GCG→GCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,987 | C→T | D537D (GAC→GAT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,996 | C→T | F540F (TTC→TTT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 777,999 | C→A | I541I (ATC→ATA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,002 | T→C | D542D (GAT→GAC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,006 | T→C | L544L (TTG→CTC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,008 | G→C | L544L (TTG→CTC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,017 | T→A | V547V (GTT→GTA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,020 | C→T | S548S (TCC→TCT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,023 | A→G | P549P (CCA→CCG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,027 | C→T | L551M (CTC→TTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,029 | C→G | L551M (CTC→TTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,032 | C→A | R552R (CGC→CGA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,041 | C→T | G555G (GGC→GGT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,044 | G→A | K556K (AAG→AAA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,056 | T→A | T560T (ACT→ACA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,061 | 2 bp→AA | coding (1685‑1686/1737 nt) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,066 | C→T | L564L (CTG→TTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,077 | C→T | A567A (GCC→GCT) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,089 | T→C | G571G (GGT→GGC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,095 | T→G | L573L (CTT→CTG) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,098 | C→A | S574S (TCC→TCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,100 | C→T | A575V (GCC→GTC) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,107 | T→A | S577S (TCT→TCA) | unknown → | Coupling protein VirD4, ATPase required for T‑DNA transfer |
| RA | 778,156 | T→A | F4I (TTT→ATT) | unknown → | lipoprotein |
| RA | 778,162 | G→C | V6L (GTT→CTT) | unknown → | lipoprotein |
| RA | 778,172 | C→T | T9M (ACG→ATG) | unknown → | lipoprotein |
| RA | 778,179 | C→A | I11I (ATC→ATA) | unknown → | lipoprotein |
| RA | 778,213 | A→C | T23P (ACG→CCA) | unknown → | lipoprotein |
| RA | 778,215 | G→A | T23P (ACG→CCA) | unknown → | lipoprotein |
| RA | 778,218 | G→A | P24P (CCG→CCA) | unknown → | lipoprotein |
| RA | 778,227 | A→G | P27P (CCA→CCG) | unknown → | lipoprotein |
| RA | 778,233 | C→T | I29I (ATC→ATT) | unknown → | lipoprotein |
| RA | 778,237 | G→A | E31K (GAA→AAA) | unknown → | lipoprotein |
| RA | 778,248 | G→A | P34P (CCG→CCA) | unknown → | lipoprotein |
| RA | 778,250 | C→T | A35V (GCA→GTA) | unknown → | lipoprotein |
| RA | 778,254 | 2 bp→CC | coding (108‑109/438 nt) | unknown → | lipoprotein |
| RA | 778,323 | C→T | N59N (AAC→AAT) | unknown → | lipoprotein |
| RA | 778,354 | T→C | L70L (TTA→CTA) | unknown → | lipoprotein |
| RA | 778,358 | A→G | D71G (GAT→GGT) | unknown → | lipoprotein |
| RA | 778,364 | A→G | N73S (AAC→AGC) | unknown → | lipoprotein |
| RA | 778,410 | T→G | A88A (GCT→GCG) | unknown → | lipoprotein |
| RA | 778,446 | A→G | P100P (CCA→CCG) | unknown → | lipoprotein |
| RA | 779,310 | G→A | S40S (TCC→TCT) | unknown ← | hypothetical protein |
| RA | 779,318 | T→C | I38V (ATT→GTT) | unknown ← | hypothetical protein |
| RA | 779,320 | C→T | R37K (AGA→AAA) | unknown ← | hypothetical protein |
| RA | 794,870 | G→A | H560Y (CAT→TAT) | unknown ← | Inner membrane component of TAM transport system |
| RA | 804,458 | T→C | V316A (GTG→GCG) | unknown → | Uncharacterized protein EC‑HemX |
| RA | 805,477 | T→C | L190L (TTA→CTA) | unknown → | Uncharacterized protein EC‑HemY in Proteobacteria (unrelated to HemY‑type PPO in GramPositives) |
| RA | 806,569 | +G | coding (396/423 nt) | unknown ← | Putative preQ0 transporter YhhQ |
| RA | 815,235 | T→C | M719T (ATG→ACG) | unknown → | Transcription accessory protein (S1 RNA‑binding domain) |
| RA | 831,643 | A→G | S150G (AGC→GGC) | unknown → | LPS‑assembly protein LptD @ Organic solvent tolerance protein precursor |
| RA | 833,193 | T→C | G666G (GGT→GGC) | unknown → | LPS‑assembly protein LptD @ Organic solvent tolerance protein precursor |
| RA | 833,559 | (A)8→9 | intergenic (+21/+69) | unknown → / ← unknown | LPS‑assembly protein LptD @ Organic solvent tolerance protein precursor/Xanthine‑guanine phosphoribosyltransferase (EC 2.4.2.22) |
| RA | 843,148 | T→C | D239D (GAT→GAC) | unknown → | L‑seryl‑tRNA(Sec) selenium transferase (EC 2.9.1.1) |
| RA | 846,243 | T→C | T172T (ACT→ACC) | unknown → | Chromosome segregation ATPases |
| RA | 851,190 | A→G | noncoding (51/77 nt) | unknown ← | tRNA‑Met‑CAT |
| RA | 855,490 | T→A | A153A (GCA→GCT) | unknown ← | Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
| RA | 863,136 | Δ1 bp | intergenic (‑111/‑403) | unknown ← / → unknown | Flp pilus assembly protein, pilin Flp/Phosphate starvation‑inducible protein PhoH, predicted ATPase |
| RA | 866,382 | C→T | P426L (CCG→CTG) | unknown → | tRNA cytosine(34) acetyltransferase (EC 2.3.1.193) |
| RA | 867,187 | C→T | L40F (CTC→TTC) | unknown → | hypothetical protein |
| RA | 870,359 | C→T | T888I (ACC→ATC) | unknown → | Transcription‑repair coupling factor |
| RA | 874,360 | A→G | I79V (ATC→GTC) | unknown → | Arginine ABC transporter, permease protein ArtM |
| RA | 874,829 | G→A | intergenic (+20/+215) | unknown → / ← unknown | Arginine ABC transporter, permease protein ArtM/hypothetical protein |
| RA | 874,954 | A→G | intergenic (+145/+90) | unknown → / ← unknown | Arginine ABC transporter, permease protein ArtM/hypothetical protein |
| RA | 885,706 | G→A | A276T (GCG→ACG) | unknown → | UDP‑N‑acetylmuramoyl‑L‑alanine‑‑D‑glutamate ligase (EC 6.3.2.9) |
| RA | 886,421 | C→T | F74F (TTC→TTT) | unknown → | Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129) |
| RA | 886,900 | A→C | D234A (GAT→GCT) | unknown → | Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129) |
| RA | 896,161 | A→G | H209R (CAC→CGC) | unknown → | Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) |
| RA | 896,244 | A→G | M237V (ATG→GTG) | unknown → | Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) |
| RA | 911,867 | A→G | H88H (CAT→CAC) | unknown ← | Fumarate reductase iron‑sulfur protein (EC 1.3.5.4) |
| RA | 920,917 | A→G | V86V (GTA→GTG) | unknown → | Recombination protein RecR |
| RA | 936,852 | G→A | S453F (TCT→TTT) | unknown ← | tRNA (5‑methylaminomethyl‑2‑thiouridylate)‑methyltransferase (EC 2.1.1.61) / FAD‑dependent cmnm(5)s(2)U34 oxidoreductase |
| RA | 937,665 | G→A | P182L (CCC→CTC) | unknown ← | tRNA (5‑methylaminomethyl‑2‑thiouridylate)‑methyltransferase (EC 2.1.1.61) / FAD‑dependent cmnm(5)s(2)U34 oxidoreductase |
| RA | 944,486 | G→A | G270G (GGC→GGT) | unknown ← | Galactose/methyl galactoside ABC transporter, substrate‑binding protein MglB (EC 3.6.3.17) |
| RA | 947,244 | T→C | A136A (GCT→GCC) | unknown → | Galactose‑1‑phosphate uridylyltransferase (EC 2.7.7.10) |
| RA | 959,296 | T→C | L66L (TTG→CTG) | unknown → | Magnesium and cobalt efflux protein CorC |
| JC | 960,296 | (AGTTACAATGT)2→1 | intergenic (+299/‑94) | unknown → / → unknown | Magnesium and cobalt efflux protein CorC/Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE |
| RA | 968,437 | C→T | F531F (TTC→TTT) | unknown → | Methionyl‑tRNA synthetase (EC 6.1.1.10) |
| RA | 971,582 | C→T | A136T (GCC→ACC) | unknown ← | Chaperone protein HscB |
| RA | 997,437 | G→A | G131S (GGT→AGT) | unknown → | Glutaredoxin 2 |
| RA | 1,000,298 | G→A | R232Q (CGG→CAG) | unknown → | Cytolethal distending toxin subunit B, DNase I‑like |
| RA | 1,000,361 | C→T | A253V (GCA→GTA) | unknown → | Cytolethal distending toxin subunit B, DNase I‑like |
| RA | 1,003,146 | +CT | intergenic (‑12/+266) | unknown ← / ← unknown | tRNA‑Lys‑TTT/Mobile element protein |
| RA | 1,012,229 | T→C | C16C (TGT→TGC) | unknown → | hypothetical protein |
| RA | 1,016,448 | T→C | T347A (ACC→GCC) | unknown ← | putative membrane protein |
| RA | 1,024,742 | C→T | T34T (ACG→ACA) | unknown ← | hypothetical protein |
| RA | 1,030,472 | A→G | S9P (TCG→CCG) | unknown ← | FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
| RA | 1,030,642 | C→A | A197S (GCC→TCC) | unknown ← | probable exported protein STY4558 |
| RA | 1,031,163 | G→A | T23I (ACA→ATA) | unknown ← | probable exported protein STY4558 |
| RA | 1,038,394 | C→A | E245* (GAG→TAG) | unknown ← | DNA topoisomerase III (EC 5.99.1.2) in PFGI‑1‑like cluster |
| RA | 1,038,563 | C→T | K188K (AAG→AAA) | unknown ← | DNA topoisomerase III (EC 5.99.1.2) in PFGI‑1‑like cluster |
| RA | 1,039,263 | T→C | E42G (GAA→GGA) | unknown ← | hypothetical protein |
| RA | 1,056,058 | G→A | R153K (AGA→AAA) | unknown → | hypothetical protein |
| RA | 1,061,592 | G→A | G248D (GGT→GAT) | unknown → | GTP‑binding protein |
| RA | 1,061,970 | A→G | K374R (AAA→AGA) | unknown → | GTP‑binding protein |
| RA | 1,069,159 | T→C | Y133Y (TAT→TAC) | unknown → | Cell wall‑associated hydrolases (invasion‑associated proteins) |
| RA | 1,071,456 | T→C | *156* (TAA→TGA) | unknown ← | Phosphohistidine phosphatase SixA |
| RA | 1,078,881 | T→C | R57R (CGT→CGC) | unknown → | Mobile element protein |
| RA | 1,080,800 | T→C | K86K (AAA→AAG) | unknown ← | Inosine‑5'‑monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain |
| RA | 1,099,712 | G→A | I451I (ATC→ATT) | unknown ← | DNA mismatch repair protein MutL |
| RA | 1,100,008 | C→T | E353K (GAA→AAA) | unknown ← | DNA mismatch repair protein MutL |
| RA | 1,114,831 | T→C | V104V (GTT→GTC) | unknown → | PTS system, glucose‑specific IIA component (EC 2.7.1.199) |
| RA | 1,115,710 | T→C | V492V (GTA→GTG) | unknown ← | Oligopeptidase A (EC 3.4.24.70) |
| RA | 1,119,350 | A→G | intergenic (+64/+211) | unknown → / ← unknown | Oligopeptide ABC transporter, substrate‑binding protein OppA (TC 3.A.1.5.1)/Aminodeoxychorismate lyase (EC 4.1.3.38) |
| RA | 1,121,864 | T→C | intergenic (+71/‑85) | unknown → / → unknown | Para‑aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)/Hydroxypyruvate reductase (EC 1.1.1.81) |
| RA | 1,133,958 | T→C | L274P (CTT→CCT) | unknown → | Thiamine‑monophosphate kinase (EC 2.7.4.16) |
| RA | 1,134,460 | C→T | C110C (TGC→TGT) | unknown → | Phosphatidylglycerophosphatase A (EC 3.1.3.27) |
| RA | 1,147,573 | C→T | Q632Q (CAG→CAA) | unknown ← | Periplasmic alpha‑amylase (EC 3.2.1.1) |
| RA | 1,152,140 | G→A | intergenic (‑121/+3) | unknown ← / ← unknown | Maltodextrin ABC transporter, permease protein MdxF/Maltodextrin ABC transporter, substrate‑binding protein MdxE |
| RA | 1,152,507 | C→T | G276D (GGT→GAT) | unknown ← | Maltodextrin ABC transporter, substrate‑binding protein MdxE |
| RA | 1,153,316 | G→A | V6V (GTC→GTT) | unknown ← | Maltodextrin ABC transporter, substrate‑binding protein MdxE |
| RA | 1,155,872 | A→T | L296F (TTA→TTT) | unknown → | Maltoporin (maltose/maltodextrin high‑affinity receptor, phage lambda receptor protein) |
| RA | 1,165,044 | G→T | V227V (GTG→GTT) | unknown → | Multidrug efflux transporter MdtK/NorM (MATE family) |
| RA | 1,165,798 | T→C | intergenic (+37/+267) | unknown → / ← unknown | Multidrug efflux transporter MdtK/NorM (MATE family)/Cys‑tRNA(Pro) deacylase YbaK |
| RA | 1,179,339 | T→C | S128S (AGT→AGC) | unknown → | Multimodular transpeptidase‑transglycosylase (EC 2.4.1.129) (EC 3.4.‑.‑) |
| RA | 1,181,106 | T→C | S717S (AGT→AGC) | unknown → | Multimodular transpeptidase‑transglycosylase (EC 2.4.1.129) (EC 3.4.‑.‑) |
| RA | 1,190,794 | C→T | S8F (TCC→TTC) | unknown → | Oxygen‑insensitive NADPH nitroreductase (EC 1.‑.‑.‑) |
| RA | 1,197,746 | A→G | D406G (GAC→GGC) | unknown → | Valyl‑tRNA synthetase (EC 6.1.1.9) |
| RA | 1,200,621 | T→C | T101A (ACG→GCG) | unknown ← | Toxin HigB / Protein kinase domain of HipA |
| RA | 1,203,433 | T→C | P217P (CCA→CCG) | unknown ← | Multidrug efflux system EmrAB‑OMF, membrane fusion component EmrA |
| RA | 1,209,184 | G→A | P84L (CCA→CTA) | unknown ← | 7‑carboxy‑7‑deazaguanine synthase (EC 4.3.99.3) |
| RA | 1,215,848 | G→A | V171V (GTG→GTA) | unknown → | Thiol‑disulfide isomerase and thioredoxins |
| RA | 1,216,310 | C→T | A104V (GCC→GTC) | unknown → | 5'‑methylthioadenosine nucleosidase (EC 3.2.2.16) @ S‑adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
| RA | 1,217,363 | G→A | R165H (CGC→CAC) | unknown → | Additional periplasmic component NikK of nickel ECF transporter |
| RA | 1,218,105 | C→T | P11S (CCG→TCG) | unknown → | Substrate‑specific component NikM of nickel ECF transporter |
| RA | 1,223,066 | T→C | intergenic (+16/‑6) | unknown → / → unknown | [NiFe] hydrogenase metallocenter assembly protein HypE/hypothetical protein |
| RA | 1,243,840 | T→C | I138T (ATT→ACT) | unknown → | hypothetical protein |
| RA | 1,243,925 | Δ1 bp | coding (498/498 nt) | unknown → | hypothetical protein |
| RA | 1,244,043 | T→C | intergenic (+118/+282) | unknown → / ← unknown | hypothetical protein/Malate dehydrogenase (EC 1.1.1.37) |
| RA | 1,253,909 | C→A | S133S (TCC→TCA) | unknown → | Sodium‑dependent transporter, SNF family |
| RA | 1,273,160 | G→T | H45N (CAT→AAT) | unknown ← | Argininosuccinate synthase (EC 6.3.4.5) |
| RA | 1,273,719 | C→T | D166N (GAT→AAT) | unknown ← | Nucleoside‑diphosphate‑sugar epimerases |
| RA | 1,278,291 | A→G | I556T (ATT→ACT) | unknown ← | Glutamine synthetase adenylyl‑L‑tyrosine phosphorylase (EC 2.7.7.89) / Glutamate‑ammonia‑ligase adenylyltransferase (EC 2.7.7.42) |
| RA | 1,288,020 | A→G | Q91R (CAG→CGG) | unknown → | CRISPR‑associated protein Cas1 |
| MC JC | 1,289,284 | Δ135 bp | intergenic (+225/‑408) | unknown → / → unknown | CRISPR‑associated protein Cas2/hypothetical protein |
| RA | 1,291,246 | G→A | T333T (ACG→ACA) | unknown → | Thiamin ABC transporter, substrate‑binding component |
| RA | 1,292,132 | T→C | V291A (GTG→GCG) | unknown → | Thiamin ABC transporter, transmembrane component |
| RA | 1,298,171 | T→C | T138T (ACA→ACG) | unknown ← | Ribosomal protein S12p methylthiotransferase accessory factor YcaO |
| RA | 1,301,106 | T→C | L175P (CTG→CCG) | unknown → | PTS system, N‑acetylmannosamine‑specific IIC component / PTS system, N‑acetylmannosamine‑specific IIB component |
| RA | 1,302,254 | G→T | I193I (ATC→ATA) | unknown ← | FIG005121: SAM‑dependent methyltransferase (EC 2.1.1.‑) |
| RA | 1,303,323 | T→C | T157T (ACT→ACC) | unknown → | Hydroxyacylglutathione hydrolase (EC 3.1.2.6) |
| RA | 1,317,436 | T→C | intergenic (+32/‑162) | unknown → / → unknown | 5‑hydroxyisourate hydrolase (EC 3.5.2.17)/hypothetical protein |
| RA | 1,321,684 | T→C | E290G (GAA→GGA) | unknown ← | hypothetical protein |
| RA | 1,326,214 | A→C | E38A (GAA→GCA) | unknown → | Chromosome segregation ATPase |
| RA | 1,326,536 | T→C | D145D (GAT→GAC) | unknown → | Chromosome segregation ATPase |
| RA | 1,326,830 | T→C | A243A (GCT→GCC) | unknown → | Chromosome segregation ATPase |
| RA | 1,329,621 | G→T | P176T (CCT→ACT) | unknown ← | GMP synthase [glutamine‑hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine‑hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) |
| JC | 1,337,407 | (CACCT)6→5 | intergenic (+150/‑146) | unknown → / → unknown | Translation initiation factor 2/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| RA | 1,340,494 | T→C | V230A (GTA→GCA) | unknown → | Superfamily II DNA/RNA helicases, SNF2 family |
| RA | 1,342,854 | G→A | T196I (ACA→ATA) | unknown ← | hypothetical protein |
| RA | 1,345,901 | G→T | intergenic (‑174/‑119) | unknown ← / → unknown | Sugar fermentation stimulation protein SfsA/NAD(P) transhydrogenase N‑domain of subunit alpha (EC 1.6.1.2) / NAD(P) transhydrogenase C‑domain of subunit alpha (EC 1.6.1.2) |
| RA | 1,349,368 | A→G | intergenic (+209/+6) | unknown → / ← unknown | hypothetical protein/hypothetical protein |
| RA | 1,356,260 | T→C | T249T (ACT→ACC) | unknown → | Possible ABC transporter, periplasmic substrate X binding protein precursor |
| RA | 1,357,282 | C→T | D514N (GAC→AAC) | unknown ← | Excinuclease ABC subunit C |
| RA | 1,362,878 | G→A | A716V (GCG→GTG) | unknown ← | DNA internalization‑related competence protein ComEC/Rec2 |
| RA | 1,367,733 | T→G | G90G (GGT→GGG) | unknown → | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) |
| RA | 1,367,736 | G→A | E91E (GAG→GAA) | unknown → | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) |
| RA | 1,391,792 | C→A | S38* (TCG→TAG) | unknown → | Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) |
| RA | 1,395,394 | (C)7→9 | intergenic (+55/‑30) | unknown → / → unknown | Cys regulon transcriptional activator CysB/2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase (EC 2.3.1.117) |
| RA | 1,400,308 | A→G | A184A (GCA→GCG) | unknown → | SanA protein |
| RA | 1,402,555 | A→C | intergenic (+23/+13) | unknown → / ← unknown | FIG00699498: hypothetical protein/hypothetical protein |
| RA | 1,404,524 | T→C | I107V (ATA→GTA) | unknown ← | Cytochrome c‑type biogenesis protein CcdA homolog, associated with MetSO reductase |
| RA | 1,416,644 | +T | intergenic (+135/‑54) | unknown → / → unknown | Possible protease sohB (EC 3.4.21.‑)/Outer membrane protein A precursor |
| RA | 1,418,807 | T→C | A37A (GCT→GCC) | unknown → | Threonyl‑tRNA synthetase (EC 6.1.1.3) |
| RA | 1,419,107 | A→G | T137T (ACA→ACG) | unknown → | Threonyl‑tRNA synthetase (EC 6.1.1.3) |
| MC JC | 1,420,817 | (TGCCT)6→5 | intergenic (+189/‑63) | unknown → / → unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| RA | 1,422,176 | A→G | T217T (ACT→ACC) | unknown ← | Ferredoxin‑‑NADP(+) reductase (EC 1.18.1.2) |
| RA | 1,456,611 | G→T | A29S (GCC→TCC) | unknown → | Limit dextrin alpha‑1,6‑maltotetraose‑hydrolase (EC 3.2.1.196) |
| RA | 1,457,237 | G→A | S237S (TCG→TCA) | unknown → | Limit dextrin alpha‑1,6‑maltotetraose‑hydrolase (EC 3.2.1.196) |
| RA | 1,461,229 | T→C | Y385Y (TAT→TAC) | unknown → | Glycogen synthase, ADP‑glucose transglucosylase (EC 2.4.1.21) |
| RA | 1,462,217 | T→C | I194T (ATT→ACT) | unknown → | Glycogen phosphorylase (EC 2.4.1.1) |
| RA | 1,464,084 | T→G | P816P (CCT→CCG) | unknown → | Glycogen phosphorylase (EC 2.4.1.1) |
| RA | 1,467,233 | C→T | intergenic (+121/‑47) | unknown → / → unknown | Murein‑DD‑endopeptidase (EC 3.4.99.‑)/Chromosome partition protein MukF |
| RA | 1,478,301 | C→T | A242A (GCC→GCT) | unknown → | Integral membrane protein |
| RA | 1,481,387 | A→C | intergenic (+38/‑971) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,414 | C→T | intergenic (+65/‑944) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,420 | C→T | intergenic (+71/‑938) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,423 | G→A | intergenic (+74/‑935) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,429 | T→G | intergenic (+80/‑929) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,435 | C→T | intergenic (+86/‑923) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,544 | +T | intergenic (+195/‑814) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,545 | 2 bp→GA | intergenic (+196/‑812) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,549 | 2 bp→AA | intergenic (+200/‑808) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,553 | 2 bp→TCA | intergenic (+204/‑804) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,561 | C→T | intergenic (+212/‑797) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,588 | 2 bp→CC | intergenic (+239/‑769) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,620 | G→T | intergenic (+271/‑738) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,628 | 4 bp→TACC | intergenic (+279/‑727) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,633 | G→A | intergenic (+284/‑725) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,635 | T→A | intergenic (+286/‑723) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,801 | T→C | intergenic (+452/‑557) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,805 | A→C | intergenic (+456/‑553) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,815 | T→C | intergenic (+466/‑543) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,849 | C→T | intergenic (+500/‑509) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,855 | 2 bp→TC | intergenic (+506/‑502) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,862 | T→C | intergenic (+513/‑496) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,866 | C→T | intergenic (+517/‑492) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,870 | T→A | intergenic (+521/‑488) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,873 | 3 bp→GAA | intergenic (+524/‑483) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,481,884 | T→A | intergenic (+535/‑474) | unknown → / → unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| RA | 1,486,242 | A→G | K199E (AAA→GAA) | unknown → | ABC‑type Co2+ transport system, periplasmic component |
| RA | 1,487,250 | C→T | L642L (CTG→CTA) | unknown ← | DNA topoisomerase I (EC 5.99.1.2) |
| RA | 1,489,617 | C→A | W211C (TGG→TGT) | unknown ← | FIG00031715: Predicted metal‑dependent phosphoesterases (PHP family) |
| RA | 1,491,477 | T→C | I830V (ATT→GTT) | unknown ← | Membrane alanine aminopeptidase N (EC 3.4.11.2) |
| RA | 1,498,379 | A→G | A353A (GCA→GCG) | unknown → | Ribosome‑associated ATPase RbbA |
| RA | 1,500,438 | C→G | A124A (GCC→GCG) | unknown → | Inner membrane transport permease YhhJ |
| RA | 1,500,876 | T→C | S270S (TCT→TCC) | unknown → | Inner membrane transport permease YhhJ |
| RA | 1,505,042 | A→G | N153D (AAC→GAC) | unknown → | ABC transporter, substrate‑binding protein (cluster 8, B12/iron complex) |
| RA | 1,518,265 | A→C | L218V (TTG→GTG) | unknown ← | Phenylalanyl‑tRNA synthetase beta chain (EC 6.1.1.20) |
| RA | 1,522,625 | T→C | F268S (TTT→TCT) | unknown → | D‑arabinose‑5‑phosphate isomerase (EC 5.3.1.13) |
| RA | 1,523,674 | G→T | R65R (CGG→CGT) | unknown → | Anthranilate synthase, aminase component (EC 4.1.3.27) |
| RA | 1,525,576 | C→A | A180E (GCG→GAG) | unknown → | Anthranilate synthase, amidotransferase component (EC 4.1.3.27) |
| RA | 1,526,627 | G→A | T174T (ACG→ACA) | unknown → | Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
| RA | 1,529,486 | (C)8→9 | coding (141/168 nt) | unknown → | hypothetical protein |
| RA | 1,531,174 | C→T | R71R (CGC→CGT) | unknown → | Oxaloacetate decarboxylase Na(+) pump, gamma chain (EC 4.1.1.3) |
| RA | 1,531,813 | A→C | V190V (GTA→GTC) | unknown → | Oxaloacetate decarboxylase Na(+) pump, alpha chain (EC 4.1.1.3) |
| RA | 1,532,817 | C→A | P525Q (CCA→CAA) | unknown → | Oxaloacetate decarboxylase Na(+) pump, alpha chain (EC 4.1.1.3) |
| RA | 1,538,376 | A→G | V2A (GTG→GCG) | unknown ← | hypothetical protein |
| RA | 1,540,067 | T→G | intergenic (‑110/‑106) | unknown ← / → unknown | DNA‑binding protein/Phage repressor protein cI |
| MC JC | 1,542,376 | (13-bp)3→2 | coding (17‑29/738 nt) | unknown → | NADP‑dependent 3‑hydroxy acid dehydrogenase YdfG (EC 1.1.1.381) @ 3‑hydroxypropionate dehydrogenase (EC 1.1.1.298) |
| RA | 1,544,205 | C→T | P367S (CCA→TCA) | unknown → | Tryptophan synthase beta chain (EC 4.2.1.20) |
| RA | 1,552,077 | A→G | L81L (TTG→CTG) | unknown ← | Autoinducer 2 (AI‑2) ABC transporter, substrate‑binding protein |
| RA | 1,553,254 | G→C | I31M (ATC→ATG) | unknown ← | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrD |
| RA | 1,555,942 | T→C | intergenic (‑25/‑219) | unknown ← / → unknown | Autoinducer 2 (AI‑2) ABC transporter, dimeric ATP‑binding protein/LsrR, transcriptional repressor of lsr operon |
| RA | 1,560,522 | C→T | E118K (GAA→AAA) | unknown ← | Transcriptional regulator/sugar kinase |
| RA | 1,562,958 | T→C | N47D (AAC→GAC) | unknown ← | Stringent starvation protein B |
| RA | 1,568,600 | T→C | intergenic (‑17/‑166) | unknown ← / → unknown | Putative DNA‑binding protein in cluster with Type I restriction‑modification system/Alpha‑aspartyl dipeptidase Peptidase E (EC 3.4.13.21) |
| RA | 1,571,123 | (TA)5→4 | intergenic (‑112/‑195) | unknown ← / → unknown | tRNA 4‑thiouridine synthase (EC 2.8.1.4) / Rhodanese‑like domain required for thiamine synthesis/Trimethylamine‑N‑oxide reductase associated c‑type cytochrome, TorY |
| RA | 1,573,047 | G→A | G190S (GGC→AGC) | unknown → | Trimethylamine‑N‑oxide reductase (EC 1.7.2.3), TorZ |
| RA | 1,579,154 | C→T | intergenic (‑111/+50) | unknown ← / ← unknown | tRNA pseudouridine(38‑40) synthase (EC 5.4.99.12)/SSU ribosomal protein S9p (S16e) |
| RA | 1,582,991 | T→G | E1182D (GAA→GAC) | unknown ← | Exodeoxyribonuclease V beta chain (EC 3.1.11.5) |
| RA | 1,588,108 | A→G | Y580H (TAC→CAC) | unknown ← | Lon protease homolog YcbZ |
| RA | 1,590,180 | A→G | A63A (GCA→GCG) | unknown → | FIG01201035: hypothetical protein |
| RA | 1,594,935 | C→T | V12M (GTG→ATG) | unknown ← | Phosphoglycerate transport system transcriptional regulatory protein PgtA |
| RA | 1,595,211 | C→T | A648T (GCG→ACG) | unknown ← | Phosphoglycerate transport system sensor protein PgtB |
| RA | 1,596,143 | G→A | A337V (GCC→GTC) | unknown ← | Phosphoglycerate transport system sensor protein PgtB |
| RA | 1,599,416 | A→G | H3H (CAT→CAC) | unknown ← | Translation elongation factor P Lys34 hydroxylase |
| RA | 1,611,559 | T→C | intergenic (‑94/+189) | unknown ← / ← unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Glutamate racemase (EC 5.1.1.3) |
| RA | 1,618,737 | C→G | R63G (CGC→GGC) | unknown → | NAD‑dependent glyceraldehyde‑3‑phosphate dehydrogenase (EC 1.2.1.12) |
| RA | 1,628,619 | A→G | S34G (AGT→GGT) | unknown → | Phospholipid ABC transporter substrate‑binding protein MlaD |
| RA | 1,637,865 | G→A | R38H (CGT→CAT) | unknown → | DNA mismatch repair endonuclease MutH |
| RA | 1,640,983 | T→C | L334L (TTA→TTG) | unknown ← | Glutamine synthetase type I (EC 6.3.1.2) |
| RA | 1,648,783 | C→T | P39L (CCA→CTA) | unknown → | Outer membrane beta‑barrel assembly protein BamC |
| RA | 1,653,537 | C→T | A351T (GCT→ACT) | unknown ← | Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) |
| RA | 1,670,399 | A→C | V374G (GTC→GGC) | unknown ← | Uronate isomerase (EC 5.3.1.12) |
| RA | 1,681,397 | A→C | intergenic (+38/‑392) | unknown → / → unknown | hypothetical protein/Permease of the drug/metabolite transporter (DMT) superfamily |
| RA | 1,690,049 | C→T | R335H (CGT→CAT) | unknown ← | DNA primase DnaG |
| RA | 1,690,517 | T→C | E179G (GAG→GGG) | unknown ← | DNA primase DnaG |
| RA | 1,693,712 | T→C | I631V (ATT→GTT) | unknown ← | DNA ligase (NAD(+)) (EC 6.5.1.2) |
| RA | 1,697,543 | A→G | P221P (CCA→CCG) | unknown → | Sulfate transporter, CysZ‑type |
| RA | 1,697,627 | T→C | R249R (CGT→CGC) | unknown → | Sulfate transporter, CysZ‑type |
| RA | 1,744,156 | C→T | S88S (TCG→TCA) | unknown ← | N‑acetylglucosamine‑6‑phosphate deacetylase (EC 3.5.1.25) |
| RA | 1,744,942 | C→T | D113N (GAT→AAT) | unknown ← | Glucosamine‑6‑phosphate deaminase (EC 3.5.99.6) |
| RA | 1,748,466 | A→G | C113R (TGC→CGC) | unknown ← | N‑acetylmannosamine‑6‑phosphate 2‑epimerase (EC 5.1.3.9) |
| RA | 1,748,715 | T→C | N30D (AAT→GAT) | unknown ← | N‑acetylmannosamine‑6‑phosphate 2‑epimerase (EC 5.1.3.9) |
| RA | 1,749,558 | A→G | N172S (AAT→AGT) | unknown → | TRAP‑type transport system, periplasmic component, predicted N‑acetylneuraminate‑binding protein |
| RA | 1,751,287 | A→G | Q398Q (CAA→CAG) | unknown → | TRAP‑type transport system, small permease component, predicted N‑acetylneuraminate transporter / TRAP‑type transport system, large permease component, predicted N‑acetylneuraminate transporter |
| RA | 1,751,590 | A→G | A499A (GCA→GCG) | unknown → | TRAP‑type transport system, small permease component, predicted N‑acetylneuraminate transporter / TRAP‑type transport system, large permease component, predicted N‑acetylneuraminate transporter |
| RA | 1,756,123 | T→G | L184F (TTA→TTC) | unknown ← | Outer membrane protein A precursor |
| RA | 1,759,793 | G→A | A265V (GCG→GTG) | unknown ← | putative membrane protein |
| RA | 1,764,878 | C→T | P23P (CCC→CCT) | unknown → | DNA topoisomerase IV subunit B (EC 5.99.1.3) |
| RA | 1,794,175 | T→C | K97E (AAA→GAA) | unknown ← | Orotidine 5'‑phosphate decarboxylase (EC 4.1.1.23) |
| RA | 1,800,283 | G→A | G86D (GGT→GAT) | unknown → | Outer membrane receptor proteins, mostly Fe transport |
| RA | 1,800,460 | (T)7→5 | coding (434‑435/2367 nt) | unknown → | Outer membrane receptor proteins, mostly Fe transport |
| RA | 1,802,715 | A→T | E82V (GAA→GTA) | unknown → | Probable zinc protease pqqL (EC 3.4.99.‑) |
| RA | 1,807,432 | A→G | intergenic (‑122/‑178) | unknown ← / → unknown | Transcriptional activator MetR/5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine methyltransferase (EC 2.1.1.14) |
| RA | 1,812,683 | T→C | E147E (GAA→GAG) | unknown ← | Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| RA | 1,815,121 | G→A | intergenic (+91/‑7) | unknown → / → unknown | tRNA 2‑thiouridine synthesis protein TusE/Manganese ABC transporter, periplasmic‑binding protein SitA |
| RA | 1,815,619 | T→C | I164I (ATT→ATC) | unknown → | Manganese ABC transporter, periplasmic‑binding protein SitA |
| RA | 1,822,617 | T→C | Y650H (TAC→CAC) | unknown → | Putative efflux (PET) family inner membrane protein YccS |
| RA | 1,834,846 | G→A | A108A (GCG→GCA) | unknown → | Micrococcal nuclease (thermonuclease) homologs |
| RA | 1,835,677 | G→A | A217T (GCC→ACC) | unknown → | Cysteine desulfurase (EC 2.8.1.7) => sulfur transfer pathway protein CsdA |
| RA | 1,836,967 | T→C | L370L (CTA→CTG) | unknown ← | D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167) |
| RA | 1,837,578 | T→C | T167A (ACC→GCC) | unknown ← | D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167) |
| RA | 1,838,098 | T→C | intergenic (‑22/‑92) | unknown ← / → unknown | D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167)/Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) |
| RA | 1,847,165 | G→A | F123F (TTC→TTT) | unknown ← | Ribonuclease D (EC 3.1.26.3) |
| RA | 1,853,672 | G→A | intergenic (+192/‑218) | unknown → / → unknown | Aldose 1‑epimerase/FIG000875: Thioredoxin domain‑containing protein EC‑YbbN |
| RA | 1,857,068 | A→G | L401L (CTA→CTG) | unknown → | Efflux ABC transporter for glutathione/L‑cysteine, essential for assembly of bd‑type respiratory oxidases => CydD subunit |
| RA | 1,857,240 | T→G | S459A (TCC→GCC) | unknown → | Efflux ABC transporter for glutathione/L‑cysteine, essential for assembly of bd‑type respiratory oxidases => CydD subunit |
| RA | 1,866,211 | A→G | N188D (AAT→GAT) | unknown → | hypothetical protein |
| RA | 1,889,308 | T→C | A209A (GCT→GCC) | unknown → | putative flippase |
| RA | 1,892,783 | A→G | K28E (AAA→GAA) | unknown → | DNA ligase (ATP) (EC 6.5.1.1) |
| RA | 1,894,474 | C→A | G455W (GGG→TGG) | unknown ← | ATP‑dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) |
| RA | 1,894,660 | C→T | D393N (GAT→AAT) | unknown ← | ATP‑dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) |
| RA | 1,896,489 | T→C | S291G (AGT→GGT) | unknown ← | Low‑affinity gluconate/H+ symporter GntU |
| RA | 1,898,039 | T→C | S155P (TCT→CCT) | unknown → | Gluconokinase (EC 2.7.1.12) |
| JC | 1,903,171 | (TTTG)20→12 | coding (48‑79/114 nt) | unknown → | hypothetical protein |
| RA | 1,905,090 | T→C | N323D (AAT→GAT) | unknown ← | hypothetical protein |
| RA | 1,930,004 | C→T | G373G (GGC→GGT) | unknown → | Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine‑containing |
| RA | 1,942,424 | A→G | R175R (CGT→CGC) | unknown ← | Tail‑specific protease precursor (EC 3.4.21.102) |
| RA | 1,952,356 | A→G | E52E (GAA→GAG) | unknown → | Spermidine/putrescine import ABC transporter substrate‑binding protein PotD (TC 3.A.1.11.1) |
| RA | 1,954,112 | T→C | G231G (GGT→GGC) | unknown → | Cytidine deaminase (EC 3.5.4.5) |
| RA | 1,955,320 | T→C | H131R (CAT→CGT) | unknown ← | Seryl‑tRNA synthetase (EC 6.1.1.11) |
| RA | 1,957,085 | C→T | T356I (ACA→ATA) | unknown → | Anaerobic C4‑dicarboxylate transporter DcuB |
| RA | 1,959,496 | T→C | K10E (AAA→GAA) | unknown ← | Replication‑associated recombination protein RarA |
| RA | 1,975,733 | T→C | F164F (TTT→TTC) | unknown → | L‑lactate permease |
| RA | 1,978,693 | G→A | A7T (GCC→ACC) | unknown → | Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) |
| RA | 1,982,729 | G→A | G175D (GGC→GAC) | unknown → | 3‑phosphoshikimate 1‑carboxyvinyltransferase (EC 2.5.1.19) |
| RA | 1,984,969 | (A)9→8 | intergenic (+48/‑46) | unknown → / → unknown | DNA polymerase III epsilon subunit (EC 2.7.7.7)/tRNA‑Asp‑GTC |
| RA | 1,992,592 | G→A | A299T (GCC→ACC) | unknown → | Queuine tRNA‑ribosyltransferase (EC 2.4.2.29) |
| RA | 1,994,532 | G→A | M354I (ATG→ATA) | unknown → | Protein translocase subunit SecD |
| RA | 2,002,089 | G→A | A864T (GCT→ACT) | unknown → | Acetaldehyde dehydrogenase (EC 1.2.1.10) / Alcohol dehydrogenase (EC 1.1.1.1) |
| RA | 2,005,456 | C→G | A87P (GCA→CCA) | unknown ← | Inositol transport system sugar‑binding protein |
| RA | 2,015,388 | C→T | V267I (GTT→ATT) | unknown ← | 5‑keto‑2‑deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain |
| RA | 2,022,399 | A→G | D603D (GAT→GAC) | unknown ← | PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197) |
| RA | 2,023,545 | G→A | N221N (AAC→AAT) | unknown ← | PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197) |
| RA | 2,024,332 | T→G | intergenic (‑125/+285) | unknown ← / ← unknown | PTS system, mannitol‑specific IIC component / PTS system, mannitol‑specific IIB component (EC 2.7.1.197) / PTS system, mannitol‑specific IIA component (EC 2.7.1.197)/RTX toxin transporter, determinant D |
| RA | 2,028,516 | C→T | G970D (GGT→GAT) | unknown ← | RTX toxins determinant A and related Ca2+‑binding proteins |
| RA | 2,032,886 | G→A | intergenic (‑156/+162) | unknown ← / ← unknown | hypothetical protein/Serine hydroxymethyltransferase (EC 2.1.2.1) |
| RA | 2,045,297 | G→A | intergenic (‑16/+1) | unknown ← / ← unknown | TolA protein/Tol biopolymer transport system, TolR protein |
| RA | 2,046,968 | G→A | intergenic (‑39/+77) | unknown ← / ← unknown | Tol‑Pal system‑associated acyl‑CoA thioesterase/Cyd operon protein YbgE |
| RA | 2,051,727 | C→T | T86T (ACG→ACA) | unknown ← | Holliday junction ATP‑dependent DNA helicase RuvB (EC 3.6.4.12) |
| JC | 2,066,573 | +AGTCC | intergenic (+76/‑78) | unknown → / → unknown | Outer membrane receptor proteins, mostly Fe transport/Lactoylglutathione lyase (EC 4.4.1.5) |
| RA | 2,078,424 | T→C | I339T (ATA→ACA) | unknown → | GTP‑binding protein Obg |
| JC | 2,081,916 | (CGCCC)2→3 | coding (406/642 nt) | unknown → | Oligopeptide ABC transporter, permease protein OppB (TC 3.A.1.5.1) |
| RA | 2,084,518 | T→C | T128T (ACA→ACG) | unknown ← | Aerobic respiration control response regulator ArcA |
| RA | 2,086,373 | A→G | intergenic (‑13/‑130) | unknown ← / → unknown | Lysine decarboxylase family/Cytochrome c‑type biogenesis protein DsbD, protein‑disulfide reductase (EC 1.8.1.8) |
| RA | 2,088,197 | G→A | P565P (CCG→CCA) | unknown → | Cytochrome c‑type biogenesis protein DsbD, protein‑disulfide reductase (EC 1.8.1.8) |
| RA | 2,089,546 | C→T | A836T (GCG→ACG) | unknown ← | Ribonuclease E (EC 3.1.26.12) |
| RA | 2,092,109 | T→C | intergenic (‑58/+209) | unknown ← / ← unknown | Ribonuclease E (EC 3.1.26.12)/hypothetical protein |
| RA | 2,095,862 | A→G | V122A (GTT→GCT) | unknown ← | Cystathionine gamma‑synthase (EC 2.5.1.48) |
| RA | 2,103,464 | C→T | T3T (ACC→ACT) | unknown → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase (EC 6.3.2.‑) |
| RA | 2,104,404 | C→A | R317S (CGT→AGT) | unknown → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase (EC 6.3.2.‑) |
| RA | 2,105,200 | A→G | intergenic (‑232/‑9) | unknown ← / → unknown | tRNA‑Met‑CAT/Membrane‑bound lytic murein transglycosylase A |
| RA | 2,109,648 | A→G | I27T (ATC→ACC) | unknown ← | UPF0234 protein Yitk |
| RA | 2,127,968 | T→C | D44G (GAC→GGC) | unknown ← | Lysine 2,3‑aminomutase (EC 5.4.3.2) |
| RA | 2,134,206 | T→C | G94G (GGT→GGC) | unknown → | Acyl‑CoA:1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase (EC 2.3.1.51) @ Acyl‑ACP:1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase (EC 2.3.1.n4) |
| RA | 2,143,088 | A→G | I253M (ATA→ATG) | unknown → | beta‑N‑acetylglucosaminidase (EC 3.2.1.52) |
| RA | 2,147,102 | T→C | T12A (ACA→GCA) | unknown ← | FIG00696199: hypothetical protein |
| RA | 2,147,731 | G→A | A62A (GCC→GCT) | unknown ← | UPF0246 protein YaaA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | 1 | 1442301 | 1443420 | 1120 | 23 [21] | [22] 23 | [unknown]–[unknown] | [unknown],[unknown] |
| * | * | ÷ | 1 | 1773205 | 1773467 | 263 | 24 [22] | [18] 23 | [unknown]–[unknown] | [unknown],[unknown] |
| * | * | ÷ | 1 | 1877333 | 1877946 | 614 | 23 [20] | [22] 23 | [unknown]–[unknown] | [unknown],[unknown] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 618280 = | 20 (0.230) | 65 (1.180) +80 bp |
42/270 | 0.2 | 79.7% | intergenic (+17/‑1) | unknown/unknown | tRNA‑Ser‑GCT/tRNA‑Arg‑ACG |
| ? | 1 | = 618330 | 33 (0.380) | noncoding (50/77 nt) | unknown | tRNA‑Arg‑ACG | |||||
| * | ? | 1 | 1645323 = | 59 (0.670) | 26 (0.300) | 21/426 | 2.6 | 24.7% | coding (874/2526 nt) | unknown | hypothetical protein |
| ? | 1 | = 1645592 | 100 (1.150) | coding (1143/2526 nt) | unknown | hypothetical protein | |||||
| * | ? | 1 | 1645329 = | 63 (0.720) | 53 (0.610) | 39/426 | 1.0 | 39.5% | coding (880/2526 nt) | unknown | hypothetical protein |
| ? | 1 | = 1645598 | 100 (1.150) | coding (1149/2526 nt) | unknown | hypothetical protein | |||||
| * | ? | 1 | 1703915 = | NA (NA) | 293 (3.580) | 118/402 | 0.0 | 85.8% | intergenic (‑484/+100) | unknown/unknown | tRNA‑Asp‑GTC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 1703926 | 52 (0.590) | intergenic (‑495/+89) | unknown/unknown | tRNA‑Asp‑GTC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 1812418 = | 4 (0.050) | 71 (0.830) +GCCCGC |
55/418 | 0.4 | 94.8% | coding (260/270 nt) | unknown | hypothetical protein |
| ? | 1 | = 1812424 | NA (NA) | coding (254/270 nt) | unknown | hypothetical protein | |||||