Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,611,559 T→C intergenic (‑94/+189) unknown ← / ← unknown SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Glutamate racemase (EC 5.1.1.3)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,611,5590TC100.0% 26.0 / NA 11intergenic (‑94/+189)unknown/unknownSSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Glutamate racemase (EC 5.1.1.3)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (6/5);  total (6/5)

GCGTTCAATCTGAGCCATGATCAAACTCTTCAATTCAAAAAGCTTAATCCCTCAATAGCTGACTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATTATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTATTTTTTGTCAAATTTCTCTCAAAACCTCACTATCGACATCTAATAAACGCAGCGTTTCAA  >  1/1611427‑1611800
                                                                                                                                    |                                                                                                                                                                                                                                                 
gCGTTCAATCTGAGCCATGATCAAACTCTTCAATTCAAAAAGCTTAATCCCTCAATAGCTGACTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGtattat                                                                                                                               >  1:316144/1‑249 (MQ=14)
   ttCAATCTGAGCCATGATCAAACTCTTCAATTCAAAAAGCTTAATCCCTCAATAGCTGACTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCt                                                                                                                          <  1:602776/251‑1 (MQ=14)
   ttCAATCTGAGCCATGATCAAACTCTTCAATTCAAAAAGCTTAATCCCTCAATAGCTGACTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCt                                                                                                                          <  1:774938/251‑1 (MQ=14)
                     cAAACTCTTCAATTCAAAAAGCTTAATCCCTCAATAGCTGACTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCaa                                                                                                        <  1:602237/251‑1 (MQ=14)
                                                              cTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCtt                                                               >  1:469808/1‑251 (MQ=39)
                                                                               aaataatataaataaACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTATTTTTTGTCAAAttt                                               >  1:884834/1‑250 (MQ=255)
                                                                                                 aaTCTTCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTATTTTTTGTCAAATTTCTCTCAAAACCTCACTAt                             <  1:584858/250‑1 (MQ=255)
                                                                                                     ttCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGc                                                                                                                                          >  1:107327/1‑137 (MQ=18)
                                                                                                     ttCCGGCACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTAttttt                                                         <  1:269801/218‑1 (MQ=255)
                                                                                                                aTTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTATTTTTTGTCAAATTTCTCTCAAAACCTCACTATCGACATCTAATAAACg             >  1:853540/1‑251 (MQ=255)
                                                                                                                           tCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTATTTTTTGTCAAATTTCTCTCAAAACCTCACTATCGACATCTAATAAACGCAGCGTTTCaa  >  1:854061/1‑251 (MQ=255)
                                                                                                                                    |                                                                                                                                                                                                                                                 
GCGTTCAATCTGAGCCATGATCAAACTCTTCAATTCAAAAAGCTTAATCCCTCAATAGCTGACTTAATTAATCTATTATAAATAATATAAATAAACGAATCTTCCGGCACCTATTAAGTTCAATCTTAAAATTATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACAAAAAACGACGCGCTGTCTATAAAACCCTACAACGGCGCGCCGTTGTGCCCGCGTATTATAGGCTTTTATCCTTACCTTGCAAGTACTTTTTTACAAAAAATTTAAAAATCTTTTTGATTGCTTATTTTTTGTCAAATTTCTCTCAAAACCTCACTATCGACATCTAATAAACGCAGCGTTTCAA  >  1/1611427‑1611800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑