| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,553,254 | G→C | I31M (ATC→ATG) | unknown ← | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,553,254 | 0 | G | C | 100.0% | 299.0 / NA | 83 | I31M (ATC→ATG) | unknown | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrD |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (40/43); total (40/43) | |||||||||||
GGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGGATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATAC > 1/1553008‑1553499 | ggTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATa > 1:100015/1‑250 (MQ=255)ggTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATa > 1:99259/1‑250 (MQ=255) tgtAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATAcg < 1:524909/250‑1 (MQ=255) gCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGaa > 1:183435/1‑251 (MQ=255) aTTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGAAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAAc < 1:517529/251‑1 (MQ=255) aaaCCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAAt < 1:831118/251‑1 (MQ=255) ccGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAAttt > 1:236358/1‑250 (MQ=255) gCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCaa > 1:250182/1‑251 (MQ=255) taataTGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:352126/251‑1 (MQ=255) caaAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAAt < 1:542953/251‑1 (MQ=255) aaaaaGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAAt < 1:645697/250‑1 (MQ=255) aaggTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATATCACATAAGCCGACGTTGGAGCCGAAAGACATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGTCCAGCATACCGATATAAATTAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:426627/232‑1 (MQ=255) aaGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATaa > 1:357176/1‑250 (MQ=255) ttAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAGCACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGt < 1:4516/250‑1 (MQ=255) ttAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGt < 1:825952/250‑1 (MQ=255) tAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCa < 1:306332/251‑1 (MQ=255) cGCCAATATCAACGGCACATCGGCTTTAAACGACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGc < 1:100887/251‑1 (MQ=255) atCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCt < 1:841395/251‑1 (MQ=255) gCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCaa > 1:341088/1‑204 (MQ=255) cacaTCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAAc < 1:899369/250‑1 (MQ=255) gCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACAt > 1:110446/1‑251 (MQ=255) aaaCAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAatta < 1:427488/251‑1 (MQ=255) caacaCACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAatta > 1:108899/1‑248 (MQ=255) caacaCACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTc < 1:351511/251‑1 (MQ=255) acacacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAg > 1:586640/1‑200 (MQ=255) acacacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTccc < 1:47626/251‑1 (MQ=255) cacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTc < 1:882627/246‑1 (MQ=255) cacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCcctc > 1:541471/1‑250 (MQ=255) cccAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:555657/184‑1 (MQ=255) cccAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCtt > 1:201150/1‑251 (MQ=255) aGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAatta < 1:389038/237‑1 (MQ=255) aGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTccc < 1:92290/242‑1 (MQ=255) aGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑ttt > 1:158219/1‑251 (MQ=255) ggTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:106730/179‑1 (MQ=255) gCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTTAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTc < 1:426495/232‑1 (MQ=255) cacaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCa < 1:385745/213‑1 (MQ=255) cacaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTTCGACCGCa > 1:80881/1‑251 (MQ=255) cacaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCa > 1:861889/1‑250 (MQ=255) acaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGaa > 1:611542/1‑161 (MQ=255) aaGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTta < 1:78956/251‑1 (MQ=255) aaGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATACAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTta < 1:453803/251‑1 (MQ=255) gTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga > 1:620133/1‑157 (MQ=255) ggAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTatat > 1:804118/1‑234 (MQ=255) gAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTAtttt > 1:344369/1‑251 (MQ=255) gAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTAttt < 1:87013/250‑1 (MQ=255) atatCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGc > 1:853258/1‑242 (MQ=255) tatCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCaa < 1:662190/138‑1 (MQ=255) aCGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCAt < 1:788177/251‑1 (MQ=255) tAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACg < 1:688400/251‑1 (MQ=255) tAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCCATTTTCATCTTTCAGAAAACGGGCATAACg < 1:497915/251‑1 (MQ=255) aTCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGtt > 1:271411/1‑251 (MQ=255) tGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTaa < 1:395302/251‑1 (MQ=255) gTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAAtt > 1:353361/1‑251 (MQ=255) gTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAAtt > 1:556375/1‑251 (MQ=255) aCGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTaa > 1:662697/1‑245 (MQ=255) gcaaggcaagCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAAt > 1:424643/1‑119 (MQ=255) aggcaagCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTc < 1:490708/143‑1 (MQ=255) ggcaagCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTg > 1:855462/1‑251 (MQ=255) gcaagCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTgg > 1:296900/1‑251 (MQ=255) gCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTatat > 1:367520/1‑184 (MQ=255) gCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAAc > 1:555098/1‑226 (MQ=255) tACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATc < 1:535613/203‑1 (MQ=255) tACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGatcat > 1:34664/1‑251 (MQ=255) aaataaaATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATaa > 1:333027/1‑138 (MQ=255) aaataaaATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAAt > 1:664696/1‑251 (MQ=255) gCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACAt > 1:282019/1‑120 (MQ=255) cTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTatat > 1:608239/1‑155 (MQ=255) cTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGTCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCa > 1:532251/1‑251 (MQ=255) cTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAatta > 1:379246/1‑214 (MQ=255) cTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCa > 1:502264/1‑251 (MQ=255) cTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCa > 1:707354/1‑251 (MQ=255) gTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAAt > 1:508364/1‑251 (MQ=255) aaaGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATAc < 1:631797/251‑1 (MQ=255) caCGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGa < 1:497771/249‑1 (MQ=255) cGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGt < 1:15240/186‑1 (MQ=255) tttAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAAtcc < 1:83779/221‑1 (MQ=255) tttAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTa > 1:219678/1‑251 (MQ=255) ttAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTAc < 1:794644/251‑1 (MQ=255) aTCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTatat < 1:338157/135‑1 (MQ=255) tCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATTTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATAc < 1:449592/251‑1 (MQ=255) tCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATAc < 1:195699/251‑1 (MQ=255) tCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATAc < 1:178839/251‑1 (MQ=255) tCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATAc < 1:794263/251‑1 (MQ=255) | GGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGGATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATAC > 1/1553008‑1553499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |