Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,349,368	A→G	intergenic (+209/+6)	unknown → / ← unknown	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,349,368	0	A	G	100.0%	258.8 / NA	75	intergenic (+209/+6)	unknown/unknown	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/40);  total (35/40)

TATTTATCCAGTGAATAATTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTACCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAACACATAAAAAC  >  1/1349129‑1349611                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                      tatTTATCCAGTGAATAATTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAAc                                                                                                                                                                                                                                             >  1:294729/1‑250 (MQ=255)        ccAGTGAATAATTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATc                                                                                                                                                                                                                                     <  1:803280/251‑1 (MQ=255)             gAATAATTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCaataa                                                                                                                                                                                                                                       <  1:382958/244‑1 (MQ=255)                taatTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTcgg                                                                                                                                                                                                                             >  1:17260/1‑249 (MQ=255)                  atTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGt                                                                                                                                                                                                                           >  1:1638/1‑251 (MQ=255)                  atTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCAGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGt                                                                                                                                                                                                                           >  1:787550/1‑251 (MQ=255)                          gAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAGAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAg                                                                                                                                                                                                                   >  1:326927/1‑251 (MQ=255)                          gAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAAcc                                                                                                                                                                                                                                            <  1:222195/226‑1 (MQ=255)                          gAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTa                                                                                                                                                                                                                     <  1:675083/249‑1 (MQ=255)                          gAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAg                                                                                                                                                                                                                   >  1:472622/1‑251 (MQ=255)                               aataTGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCt                                                                                                                                                                                                               >  1:475298/1‑250 (MQ=255)                                atatGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGAc                                                                                                                                                                                                                 <  1:817733/247‑1 (MQ=255)                                         atatTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATc                                                                                                                                                                                                                                     >  1:895946/1‑218 (MQ=255)                                                             aaaCAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCAtt                                                                                                                                                                                >  1:739323/1‑251 (MQ=255)                                                                   gTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTc                                                                                                                                                                            <  1:643844/248‑1 (MQ=255)                                                                          ccATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCtcatc                                                                                                                                                                                                           <  1:64223/211‑1 (MQ=255)                                                                          ccATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTgg                                                                                                                                                                                                      >  1:290634/1‑216 (MQ=255)                                                                          ccATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTAc                                                                                                                                                                                               <  1:641589/223‑1 (MQ=255)                                                                          ccATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTg                                                                                                                                                                  >  1:443831/1‑251 (MQ=255)                                                                                     aagaaCAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACaa                                                                                                                                                        >  1:856015/1‑250 (MQ=255)                                                                                     aagaaCAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAAc                                                                                                                                                       <  1:692144/251‑1 (MQ=255)                                                                                       gaaCAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTaa                                                                                                                                                                                                                    >  1:110876/1‑189 (MQ=255)                                                                                                     gTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAg‑tgt                                                                                                                                       >  1:748095/1‑250 (MQ=255)                                                                                                                ttGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAActt                                                                                                                                                     >  1:274586/1‑226 (MQ=255)                                                                                                                ttGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCgg                                                                                                                           >  1:303109/1‑251 (MQ=255)                                                                                                                  gTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGAc                                                                                                                                                                                                                 >  1:38642/1‑165 (MQ=255)                                                                                                                  gTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGaaa                                                                                                                                            <  1:824282/233‑1 (MQ=255)                                                                                                                  gTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCa                                                                                                                         >  1:714906/1‑251 (MQ=255)                                                                                                                           gTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGcctt                                                                                                                >  1:690477/1‑251 (MQ=255)                                                                                                                           gTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGcctt                                                                                                                >  1:634747/1‑251 (MQ=255)                                                                                                                                  tCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTc                                                                                                                                                                                                                               <  1:124686/135‑1 (MQ=255)                                                                                                                                  tCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTcatcat                                                                                                                                                                                                         <  1:467988/157‑1 (MQ=255)                                                                                                                                  tCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACg                                                                                                         >  1:149934/1‑251 (MQ=255)                                                                                                                                   cTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAAtt                                                                                                                                                                                        <  1:293293/173‑1 (MQ=255)                                                                                                                                   cTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGa                                                                                                        >  1:849185/1‑251 (MQ=255)                                                                                                                                    ttAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAAc                                                                                                                                                       >  1:768466/1‑204 (MQ=255)                                                                                                                                    ttAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGAt                                                                                                       <  1:704829/251‑1 (MQ=255)                                                                                                                                              gCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTtg                                                                                             >  1:696507/1‑251 (MQ=255)                                                                                                                                                ccAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTtgtg                                                                                           <  1:870946/251‑1 (MQ=255)                                                                                                                                                   aCCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGAc                                                                                                                                                                                                                 <  1:191553/132‑1 (MQ=255)                                                                                                                                                           gaaATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGtgttg                                                                                        <  1:386401/243‑1 (MQ=255)                                                                                                                                                            aaaTATTGGAGTGTCTTGAAACCCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTc                                                                                <  1:702935/250‑1 (MQ=255)                                                                                                                                                            aaaTATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTc                                                                                <  1:848308/250‑1 (MQ=255)                                                                                                                                                            aaaTATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTc                                                                                <  1:347402/250‑1 (MQ=255)                                                                                                                                                              atatTGGAGCGTCTTGAAAGCCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGAc                                                                                                                                                                                                                 <  1:218550/121‑1 (MQ=255)                                                                                                                                                               tatTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAg                                                                            <  1:640572/251‑1 (MQ=255)                                                                                                                                                                            tGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTtg                                                                                             >  1:81794/1‑221 (MQ=255)                                                                                                                                                                                  cccGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGAt                                                                                                       >  1:722991/1‑205 (MQ=255)                                                                                                                                                                                     gTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCtcatca                                                                                                                                                                                                          <  1:364485/105‑1 (MQ=255)                                                                                                                                                                                      taataaACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTAt                                                                        <  1:629718/232‑1 (MQ=255)                                                                                                                                                                                      taataaACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGt                                                     >  1:474704/1‑251 (MQ=255)                                                                                                                                                                                        ataaACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTg                                                   <  1:95758/251‑1 (MQ=255)                                                                                                                                                                                        ataaACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTg                                                   <  1:258029/251‑1 (MQ=255)                                                                                                                                                                                          aaaCTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATATTCTTTTTCAGGTTGGCTAAGACTTCATCATTGGTTTTTACTTTATTTTCGCCATT‑GTCATTTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCATTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGTTCATAGTTATTTTCTTTTTAAAATTTAGTTGt                                                  >  1:667403/1‑250 (MQ=255)                                                                                                                                                                                           aaCTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGt                                                                           >  1:93496/1‑224 (MQ=255)                                                                                                                                                                                                   gACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGAt                                                                                                       <  1:573716/188‑1 (MQ=255)                                                                                                                                                                                                    aCTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATAc                                       <  1:52911/251‑1 (MQ=255)                                                                                                                                                                                                     cTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGAt                                                                                                       >  1:51187/1‑186 (MQ=255)                                                                                                                                                                                                     cTATTGGAAAGAATCGGATAATGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGAt                                                                                                       >  1:181893/1‑186 (MQ=255)                                                                                                                                                                                                      tATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTg                                     <  1:414185/251‑1 (MQ=255)                                                                                                                                                                                                       aTTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTtg                                                                                             >  1:543449/1‑194 (MQ=255)                                                                                                                                                                                                       aTTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGt                                                                           >  1:895085/1‑212 (MQ=255)                                                                                                                                                                                                           gAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAAtt                                                                                                                                                                        <  1:399878/116‑1 (MQ=255)                                                                                                                                                                                                               gAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCa                                                                                                                                                                           <  1:76194/109‑1 (MQ=255)                                                                                                                                                                                                               gAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGc                                                                                  >  1:376811/1‑197 (MQ=255)                                                                                                                                                                                                               gAATCGGATATTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGaaa                                  <  1:564046/245‑1 (MQ=255)                                                                                                                                                                                                                       tatTGAAAAAACGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCTTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATgg                    <  1:850342/251‑1 (MQ=255)                                                                                                                                                                                                                               aaaCGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAac            <  1:550728/251‑1 (MQ=255)                                                                                                                                                                                                                               aaaCGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAac            <  1:266396/251‑1 (MQ=255)                                                                                                                                                                                                                                  cGCCTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAAcaca         >  1:633650/1‑251 (MQ=255)                                                                                                                                                                                                                                    ccTAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGa                                                                                                        <  1:642486/154‑1 (MQ=255)                                                                                                                                                                                                                                      tAAAGAATTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGTCCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAACACATaaa     <  1:94508/251‑1 (MQ=255)                                                                                                                                                                                                                                        aaGAATTTGCCTTTTTAACCAATATTCTTTTTAAGGTTGGTAAAGACCTAATAATTGAATTTTACTTTAATTTCG‑CATTGGTCAATTTTAGTAAAAAATACACCTTCTTCT‑AAAGTTGTCACTTTTGGGGGCAATTGGCCTTCCTTCCGAAAGGTTTCTTGTGTGGTTATCCTCAAAGTTA‑TTTCCTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAACACATAAAAAc  <  1:182205/251‑1 (MQ=255)                                                                                                                                                                                                                                           aaTTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAACACATAAAAAc  <  1:64744/249‑1 (MQ=255)                                                                                                                                                                                                                                           aaTTTGCCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAACACATAAAAAc  <  1:773100/249‑1 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                      TATTTATCCAGTGAATAATTGGAGTGAATAAATATGGATAATATTCAACTTTTTGAACAAAAACAGGTGCGCTCCATTGGGACGAAGAACAGGAACAATGGTATTTTTCGATTGTAGATGTGGTTGGCATCTTAACAGACAGCCCAACCCCGAAGAAATATTGGAGCGTCTTGAAAACCCGTAATAAACTAACGGACTATTGGAAAGAATCGGATATTGAAAAAACGCCTAAAGAATTTACCTTGTTAACCAATAATCTTTTTCAGGTTGGCTAAGACCTCATCATTGGATTTTACTTTAATTTCGCCATT‑GTCAATTTTAGTGAAAAATACAACTTCTTCTGAAAG‑TGTCACTTTTTGCGGCAAATAGCCTTCCTTACGATAGGTTTCTTGTGTTGTTATGCTCATAGTTATTTTCTTTTTAAAATTTAGTTGTCATCATCATACTGAAAAACGACAGTAATGGCAATCAACACATAAAAAC  >  1/1349129‑1349611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑