mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 183 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,481,408 | 0 | A | T | 76.5% | 107.6 / 32.7 | 51 | intergenic (+59/‑950) | unknown/unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| * | 1 | 1,481,400 | 0 | T | C | 72.2% | 86.7 / 32.9 | 54 | intergenic (+51/‑958) | unknown/unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| * | 1 | 1,481,402 | 0 | G | T | 72.2% | 89.0 / 44.4 | 54 | intergenic (+53/‑956) | unknown/unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| * | 1 | 1,481,396 | 0 | A | T | 67.8% | 86.9 / 59.7 | 59 | intergenic (+47/‑962) | unknown/unknown | Zona occludens toxin‑like phage protein/Bacterial non‑heme ferritin (EC 1.16.3.2) |
| * | 1 | 1,645,385 | 0 | C | G | 61.8% | 160.3 / 193.0 | 144 | A312A (GCC→GCG) | unknown | hypothetical protein |
| * | 1 | 1,476,331 | 0 | A | C | 57.4% | 28.6 / 67.2 | 54 | T1108P (ACC→CCC) | unknown | Chromosome partition protein MukB |
| * | 1 | 1,645,354 | 0 | C | T | 54.6% | 40.3 / 174.2 | 142 | A302V (GCG→GTG) | unknown | hypothetical protein |
| * | 1 | 960,219 | 1 | . | C | 52.0% | 81.5 / 93.1 | 50 | intergenic (+222/‑181) | unknown/unknown | Magnesium and cobalt efflux protein CorC/Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE |
| * | 1 | 1,645,431 | 0 | C | A | 50.0% | 18.8 / 204.9 | 138 | Q328K (CAA→AAA) | unknown | hypothetical protein |
| * | 1 | 1,645,429 | 0 | T | C | 49.6% | 6.2 / 172.9 | 135 | V327A (GTC→GCC) ‡ | unknown | hypothetical protein |
| * | 1 | 1,748,643 | 0 | A | C | 49.2% | 70.4 / 27.1 | 65 | L54V (TTG→GTG) | unknown | N‑acetylmannosamine‑6‑phosphate 2‑epimerase (EC 5.1.3.9) |
| * | 1 | 1,645,430 | 0 | C | A | 48.9% | 19.1 / 210.3 | 138 | V327V (GTC→GTA) ‡ | unknown | hypothetical protein |
| * | 1 | 1,927,451 | 0 | C | G | 44.8% | 21.5 / 12.6 | 30 | intergenic (+69/‑66) | unknown/unknown | Hydrogenase‑4 component I/Hydrogenase‑4 maturation protease |
| * | 1 | 960,211 | 1 | . | C | 44.0% | 6.6 / 102.9 | 50 | intergenic (+214/‑189) | unknown/unknown | Magnesium and cobalt efflux protein CorC/Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE |
| * | 1 | 789,340 | 0 | G | A | 43.8% | 44.5 / 22.3 | 48 | intergenic (‑41/‑98) | unknown/unknown | hypothetical protein/Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
| * | 1 | 1,669,869 | 0 | A | C | 43.3% | 92.2 / 14.9 | 68 | V80G (GTC→GGC) | unknown | 4‑hydroxy‑2‑oxoglutarate aldolase (EC 4.1.3.16) @ 2‑dehydro‑3‑deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| * | 1 | 1,072,176 | 0 | A | C | 42.7% | 122.2 / 11.9 | 75 | V366G (GTC→GGC) | unknown | Phosphoglucosamine mutase (EC 5.4.2.10) |
| * | 1 | 1,344,493 | 0 | T | G | 41.5% | 105.9 / 10.7 | 65 | T88P (ACC→CCC) | unknown | Tyrosyl‑tRNA synthetase (EC 6.1.1.1) |
| * | 1 | 1,645,382 | 0 | A | G | 41.5% | 82.9 / 144.8 | 148 | E311E (GAA→GAG) | unknown | hypothetical protein |
| * | 1 | 1,988,432 | 0 | T | A | 41.0% | 119.0 / 37.0 | 78 | N388K (AAT→AAA) | unknown | Uncharacterized protease YegQ |
| Marginal new junction evidence (lowest skew 10 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 264889 | NA (NA) | 12 (0.150) | 9/396 | 4.7 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 264994 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 865747 | 89 (1.020) | 10 (0.120) | 9/406 | 4.8 | 10.9% | coding (642/1923 nt) | unknown | tRNA cytosine(34) acetyltransferase (EC 2.3.1.193) |
| ? | 1 | = 865993 | 80 (0.970) | coding (888/1923 nt) | unknown | tRNA cytosine(34) acetyltransferase (EC 2.3.1.193) | |||||
| * | ? | 1 | = 5609 | NA (NA) | 8 (0.090) | 7/420 | 5.5 | NA | coding (10/762 nt) | unknown | Mobile element protein |
| ? | 1 | = 5819 | NA (NA) | coding (220/762 nt) | unknown | Mobile element protein | |||||
| * | ? | 1 | = 928114 | 61 (0.700) | 3 (0.050) +72 bp |
3/286 | 5.8 | 12.9% | intergenic (‑368/+159) | unknown/unknown | Soluble lytic murein transglycosylase (EC 4.2.2.n1)/YciL protein |
| ? | 1 | 960294 = | 0 (0.000) | intergenic (+297/‑106) | unknown/unknown | Magnesium and cobalt efflux protein CorC/Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE | |||||
| * | ? | 1 | 1248990 = | 101 (1.150) | 6 (0.070) | 5/412 | 6.2 | 5.7% | coding (734/1953 nt) | unknown | Electron transport complex protein RnfC |
| ? | 1 | 1249377 = | 100 (1.190) | coding (1121/1953 nt) | unknown | Electron transport complex protein RnfC | |||||
| * | ? | 1 | = 877207 | 115 (1.310) | 5 (0.060) | 5/418 | 6.2 | 4.4% | intergenic (+260/‑4) | unknown/unknown | Carbon starvation protein A/Transcriptional regulator MraZ |
| ? | 1 | = 877341 | 106 (1.240) | coding (131/459 nt) | unknown | Transcriptional regulator MraZ | |||||
| * | ? | 1 | 732132 = | 79 (0.900) | 6 (0.070) | 5/410 | 6.2 | 6.1% | coding (39/1140 nt) | unknown | A/G‑specific adenine glycosylase (EC 3.2.2.‑) |
| ? | 1 | 732475 = | 111 (1.330) | coding (382/1140 nt) | unknown | A/G‑specific adenine glycosylase (EC 3.2.2.‑) | |||||
| * | ? | 1 | = 1246328 | 89 (1.020) | 5 (0.060) | 5/422 | 6.3 | 5.3% | coding (322/888 nt) | unknown | Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains |
| ? | 1 | = 1246580 | 92 (1.070) | coding (574/888 nt) | unknown | Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains | |||||
| * | ? | 1 | = 1356830 | 76 (0.870) | 4 (0.050) | 4/386 | 6.4 | 5.3% | intergenic (‑34/+162) | unknown/unknown | Autoinducer 2 (AI‑2) ABC transporter, substrate‑binding protein/Excinuclease ABC subunit C |
| ? | 1 | = 1356880 | 74 (0.940) | intergenic (‑84/+112) | unknown/unknown | Autoinducer 2 (AI‑2) ABC transporter, substrate‑binding protein/Excinuclease ABC subunit C | |||||
| * | ? | 1 | 264873 = | NA (NA) | 6 (0.070) | 4/396 | 6.5 | NA | noncoding (1303/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 265012 = | NA (NA) | noncoding (1164/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||