| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,681,397 | A→C | intergenic (+38/‑392) | unknown → / → unknown | hypothetical protein/Permease of the drug/metabolite transporter (DMT) superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,681,397 | 0 | A | C | 100.0% | 134.8 / NA | 41 | intergenic (+38/‑392) | unknown/unknown | hypothetical protein/Permease of the drug/metabolite transporter (DMT) superfamily |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (23/18); total (23/18) | |||||||||||
AAACTCCGATATGGATTTTGAGAAAAATCCTTTATTTAGACCAACGGCAACATTAATTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTAGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGCTAAAGAAGCAACGATTGAAAGCTATGAAAATCAACTAAAATCTGAATTACAGTCAGATCC > 1/1681155‑1681641 | aaaCTCCGATATGGATTTTGAGAAAAATCCTTTATTTAGACCAACGGCAACATTAATTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCtat < 1:441031/251‑1 (MQ=255) atatGGATTTTGAGAAAAATCCTTTATTTAGACCAACGGCAACATTAATTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTc < 1:119793/250‑1 (MQ=255) atatGGATTTTGAGAAAAATCCTTTATTTAGACCAACGGCAACATTAATTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTc < 1:879897/250‑1 (MQ=255) cGGCAACATTAATTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAAcc > 1:296151/1‑250 (MQ=255) aTTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTatat > 1:307157/1‑198 (MQ=255) gTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGc < 1:891544/250‑1 (MQ=255) aCCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCa > 1:525125/1‑251 (MQ=255) aTTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTatat > 1:181215/1‑182 (MQ=255) aTTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAatat < 1:896178/249‑1 (MQ=255) aTTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAatat < 1:404243/249‑1 (MQ=255) cAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAaac < 1:132835/216‑1 (MQ=255) aaTGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTa > 1:615027/1‑251 (MQ=255) gCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAaac > 1:853590/1‑202 (MQ=255) ttCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTatat > 1:93530/1‑154 (MQ=255) aGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGaaaa < 1:521316/247‑1 (MQ=255) ttGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAAc < 1:446825/251‑1 (MQ=255) gCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCaa > 1:101018/1‑168 (MQ=255) gTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTatat > 1:617083/1‑132 (MQ=255) ggCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCaaaa > 1:463638/1‑251 (MQ=255) atGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAg > 1:85238/1‑125 (MQ=255) atGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAAc < 1:492129/195‑1 (MQ=255) atGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGa > 1:340796/1‑251 (MQ=255) gTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAg > 1:637017/1‑117 (MQ=255) gTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAatat > 1:128852/1‑166 (MQ=255) gTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGt < 1:308810/181‑1 (MQ=255) gTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCtt > 1:690727/1‑251 (MQ=255) ttttAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCtt > 1:306423/1‑250 (MQ=255) tttAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCa > 1:231468/1‑251 (MQ=255) tGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGatat < 1:459405/251‑1 (MQ=255) gCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATg > 1:688155/1‑251 (MQ=255) gCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATg > 1:778770/1‑251 (MQ=255) cATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGa > 1:253707/1‑251 (MQ=255) gagTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATg < 1:507030/127‑1 (MQ=255) aatctgaaaGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAAc < 1:469634/176‑1 (MQ=255) aTTTACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCAtt < 1:660759/108‑1 (MQ=255) tACACCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGCTAAAGAAGCAACGATTGAAAGCTATGAAAATc < 1:529996/251‑1 (MQ=255) cacCTGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGc > 1:517159/1‑217 (MQ=255) tGAACAAATAGAAGAAAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGCTAAAGAAGCAACGATTGAAAGCTATGAAAATCAACTaa > 1:679344/1‑251 (MQ=255) gaaAATGACCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACAt > 1:263524/1‑116 (MQ=255) aCCTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGCTAAAGAAGCAACGATTGAAAGCTATGAAAATCAACTAAAATCTGAATTACAGTCAGAt < 1:461472/251‑1 (MQ=255) cTCGGTCGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGCTAAAGAAGCAACGATTGAAAGCTATGAAAATCAACTAAAATCTGAATTACAGTCAGATcc < 1:47652/251‑1 (MQ=255) | AAACTCCGATATGGATTTTGAGAAAAATCCTTTATTTAGACCAACGGCAACATTAATTTGGTACAACCTAGATTCAAATGAATTGGTTGCAATTGGTGATTCAAAAGCCAGAATTGATGGCGTGAATTACAATGATGAGGCTAAATATGTAGATGTTTTAAATAGTGCATTAAGAGTAAAAATTCTGAAATCTGAAAGATCTTAAATTTACACCTGAACAAATAGAAGAAAATGACCTCGGTAGTTTCTATATTATTCCATTATTACAAAGACAATCAGAATTTCAAAACAACCCAAATGCGCCAAAAGCATTTCAATATTGGGCTATCGATGGTTTTAACATCTCTGAAAATGAACTAAAAACTTGGAAGTTTGATAAAAAACCAAAAGTAATTGAATTATCTTCAGATGGATATGAAACCTATGCTAAAGAAGCAACGATTGAAAGCTATGAAAATCAACTAAAATCTGAATTACAGTCAGATCC > 1/1681155‑1681641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |