#=GENOME_DIFF	1.0
#=CREATED	10:40:00 07 Feb 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/5R.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/ATCC_vs_gbk5R
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/5R.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/ATCC_S10_L001_R1_001.fastq.gz
#=CONVERTED-BASES	194754060
#=CONVERTED-READS	902159
#=INPUT-BASES	194778000
#=INPUT-READS	902843
#=MAPPED-BASES	190257794
#=MAPPED-READS	883489
SNP	1	589	1	4364	T
SNP	2	590	1	8758	A
SNP	3	591	1	9813	C
SNP	4	592	1	11294	C
SNP	5	593	1	12908	T
SNP	6	594	1	17305	C
SNP	7	595	1	20737	A
DEL	8	1372,1383	1	27211	4	repeat_length=4	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=TTTC
SNP	9	604	1	58048	C
SNP	10	611	1	70844	T
SNP	11	612	1	77012	C
SNP	12	613	1	78945	T
SNP	13	614	1	78960	T
DEL	14	1373,1385	1	79058	14	repeat_length=7	repeat_new_copies=2	repeat_ref_copies=4	repeat_seq=GAAGCCA
SNP	15	615	1	79478	C
SNP	16	616	1	85738	T
INS	17	617	1	87018	T	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=T
SNP	18	618	1	89985	A
SNP	19	619	1	96293	C
SNP	20	620	1	115056	A
SNP	21	621	1	124314	T
SNP	22	622	1	129387	T
SNP	23	623	1	132030	G
DEL	24	624	1	135873	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
SNP	25	625	1	135970	C
SNP	26	628	1	140424	T
SNP	27	629	1	141515	G
SNP	28	630	1	152672	T
SNP	29	634	1	157486	T
SNP	30	635	1	157749	A
SNP	31	638	1	165841	A
SNP	32	639	1	173700	C
SNP	33	640	1	175178	G
SNP	34	641	1	182278	T
SNP	35	642	1	190241	G
SNP	36	643	1	196663	T
SNP	37	644	1	199402	T
SNP	38	645	1	200370	T
SNP	39	647	1	218866	A
SNP	40	648	1	224559	C
SNP	41	649	1	230734	A
SNP	42	650	1	230755	A
SNP	43	651	1	237606	G
SNP	44	652	1	247214	A
SNP	45	660	1	273492	A
SNP	46	661	1	276001	C
SNP	47	662	1	277921	G
SNP	48	663	1	279011	C
DEL	49	666	1	280574	1
SNP	50	667	1	280785	A
SNP	51	668	1	286332	T
INS	52	1393	1	302765	TGTT
SNP	53	669	1	303305	G
SNP	54	670	1	304206	G
SNP	55	674	1	323209	A
SNP	56	675	1	324072	A
SNP	57	676	1	330230	G
SNP	58	678	1	346554	T
SNP	59	679	1	350636	G
SNP	60	680	1	351523	A
SNP	61	684	1	380976	C
SNP	62	687	1	384689	C
SNP	63	693	1	387718	A
SNP	64	694	1	400345	G
SNP	65	695	1	402614	A
SNP	66	696	1	406224	G
SNP	67	700	1	420573	A
INS	68	1399	1	426031	AAAAT	repeat_length=5	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=AAAAT
SNP	69	701	1	426309	G
SNP	70	703	1	447426	G
SNP	71	706	1	454952	A
SNP	72	707	1	456461	T
SNP	73	709	1	468489	T
SNP	74	710	1	470400	A
SNP	75	713	1	474201	T
SNP	76	714	1	476697	C
SNP	77	715	1	476998	C
SNP	78	716	1	480788	C
SNP	79	717	1	480811	C
SNP	80	724	1	487688	A
SNP	81	726	1	488318	C
SNP	82	727	1	496025	G
SNP	83	729	1	505268	A
SNP	84	730	1	506901	C
SNP	85	731	1	508994	A
SNP	86	732	1	511351	A
SNP	87	733	1	517713	C
SNP	88	735	1	524986	C
SNP	89	736	1	526276	A
SNP	90	737	1	526792	T
SNP	91	738	1	533871	G
SNP	92	739	1	535939	G
SNP	93	740	1	536536	T
SNP	94	747	1	553282	A
SNP	95	748	1	554687	C
SNP	96	749	1	554761	C
SNP	97	750	1	559599	C
SNP	98	751	1	563298	T
SNP	99	762	1	605262	C
SNP	100	763	1	608195	C
SNP	101	764	1	610281	C
SNP	102	765	1	610385	C
SNP	103	766	1	613405	A
SNP	104	767	1	628593	C
SNP	105	768	1	628678	C
SNP	106	769	1	631527	C
SNP	107	770	1	660864	C
SNP	108	771	1	661592	T
SNP	109	775	1	666474	A
SNP	110	776	1	668636	C
SNP	111	779	1	680739	G
SNP	112	780	1	683646	A
INS	113	1406	1	686834	ATT
SNP	114	781	1	687605	A
SNP	115	782	1	693833	A
SNP	116	783	1	704090	C
SNP	117	784	1	704243	G
SNP	118	785	1	709956	A
SNP	119	786	1	717030	C
SNP	120	787	1	718390	C
SNP	121	788	1	720669	C
SNP	122	789	1	724765	C
SNP	123	790	1	725966	C
SNP	124	791	1	726475	A
SNP	125	793	1	738061	G
SNP	126	795	1	762130	A
SNP	127	796	1	765925	T
SNP	128	797	1	769124	C
SNP	129	798	1	769973	T
SNP	130	799	1	771326	A
SNP	131	800	1	772169	C
SNP	132	801	1	774772	C
SNP	133	802	1	775897	A
SNP	134	803	1	775927	G
SNP	135	804	1	775930	G
SNP	136	805	1	775936	T
SNP	137	806	1	775945	C
SNP	138	807	1	775975	C
SNP	139	808	1	775999	C
SNP	140	809	1	776011	T
SNP	141	810	1	776014	T
SNP	142	811	1	776026	G
SNP	143	812	1	776029	T
SNP	144	813	1	776041	G
SNP	145	814	1	776047	T
SNP	146	815	1	776051	C
SNP	147	816	1	776056	A
SNP	148	817	1	776062	A
SNP	149	818	1	776065	G
SNP	150	819	1	776075	T
SNP	151	820	1	776077	A
SNP	152	821	1	776080	G
SNP	153	822	1	776250	G
SNP	154	823	1	776281	T
SNP	155	824	1	776284	T
SNP	156	825	1	776302	T
SNP	157	826	1	776306	C
SNP	158	827	1	776317	C
SNP	159	828	1	776347	T
SNP	160	829	1	776356	T
SNP	161	830	1	776359	G
SNP	162	831	1	776368	A
SNP	163	832	1	776370	G
SUB	164	833,834	1	776375	2	TG
SNP	165	835	1	776419	C
SNP	166	836	1	776436	A
SUB	167	837,838	1	776438	2	GT
SNP	168	839	1	776709	C
SNP	169	840	1	776721	G
SNP	170	841	1	776724	C
SNP	171	842	1	776727	T
SNP	172	843	1	776739	G
SNP	173	844	1	776745	T
SUB	174	845,846	1	776751	2	AC
SNP	175	847	1	776757	A
SNP	176	848	1	776760	G
SNP	177	849	1	776766	A
SNP	178	850	1	776769	G
SNP	179	851	1	776772	A
SNP	180	852	1	776775	T
SNP	181	853	1	776779	A
SUB	182	854,855	1	776781	2	CG
SNP	183	856	1	776793	T
SNP	184	857	1	776796	T
SNP	185	858	1	776799	A
SUB	186	859,860	1	776805	2	GC
SNP	187	861	1	776808	G
SUB	188	862,863	1	776810	2	CA
SNP	189	864	1	776815	G
SNP	190	865	1	776823	T
SNP	191	866	1	776826	G
SNP	192	867	1	776835	G
SUB	193	868,869	1	776838	2	CA
SNP	194	870	1	776853	C
SNP	195	871	1	776859	T
SNP	196	872	1	776862	C
SNP	197	873	1	776874	T
SNP	198	874	1	776877	A
SNP	199	875	1	776889	A
SNP	200	876	1	776898	G
SNP	201	877	1	776901	A
SNP	202	878	1	776916	G
SNP	203	879	1	776928	T
SNP	204	880	1	776937	G
SUB	205	881,882	1	776946	2	GC
SNP	206	883	1	776973	G
SNP	207	884	1	776976	G
SNP	208	885	1	777006	T
SNP	209	886	1	777066	G
SNP	210	887	1	777078	A
SNP	211	888	1	777123	C
SNP	212	889	1	777131	T
SNP	213	890	1	777138	C
SNP	214	891	1	777141	T
SNP	215	892	1	777151	T
SNP	216	893	1	777156	C
SNP	217	894	1	777162	T
SNP	218	895	1	777165	C
SNP	219	896	1	777174	T
SNP	220	897	1	777180	T
SNP	221	898	1	777192	T
SNP	222	899	1	777195	G
SNP	223	900	1	777216	A
SNP	224	901	1	777222	T
SNP	225	902	1	777228	C
SNP	226	903	1	777258	G
SNP	227	904	1	777264	T
SNP	228	905	1	777297	T
SNP	229	906	1	777318	C
SNP	230	907	1	777333	C
SNP	231	908	1	777338	T
SNP	232	909	1	777376	T
SNP	233	910	1	777522	C
SNP	234	911	1	777543	A
SNP	235	912	1	777545	C
SNP	236	913	1	777570	A
SNP	237	914	1	777588	C
SNP	238	915	1	777636	T
SNP	239	916	1	777660	T
SNP	240	917	1	777741	C
SNP	241	918	1	777756	A
SNP	242	919	1	777762	A
SNP	243	920	1	777771	C
SNP	244	921	1	777780	C
SNP	245	922	1	777820	A
SNP	246	923	1	777840	A
SNP	247	924	1	777843	T
SNP	248	925	1	777849	A
SNP	249	926	1	777873	T
SNP	250	927	1	777876	G
SNP	251	928	1	777882	A
SNP	252	929	1	777885	A
SNP	253	930	1	777900	G
SNP	254	931	1	777907	T
SNP	255	932	1	777912	C
SNP	256	933	1	777915	C
SNP	257	934	1	777960	A
SNP	258	935	1	777972	A
SNP	259	936	1	777987	T
SNP	260	937	1	777996	T
SNP	261	938	1	777999	A
SNP	262	939	1	778002	C
SNP	263	940	1	778006	C
SNP	264	941	1	778008	C
SNP	265	942	1	778017	A
SNP	266	943	1	778020	T
SNP	267	944	1	778023	G
SNP	268	945	1	778027	T
SNP	269	946	1	778029	G
SNP	270	947	1	778032	A
SNP	271	948	1	778041	T
SNP	272	949	1	778044	A
SNP	273	950	1	778056	A
SUB	274	951,952	1	778061	2	AA
SNP	275	953	1	778066	T
SNP	276	954	1	778077	T
SNP	277	955	1	778089	C
SNP	278	956	1	778095	G
SNP	279	957	1	778098	A
SNP	280	958	1	778100	T
SNP	281	959	1	778107	A
SNP	282	960	1	778156	A
SNP	283	961	1	778162	C
SNP	284	962	1	778172	T
SNP	285	963	1	778179	A
SNP	286	964	1	778213	C
SNP	287	965	1	778215	A
SNP	288	966	1	778218	A
SNP	289	967	1	778227	G
SNP	290	968	1	778233	T
SNP	291	969	1	778237	A
SNP	292	970	1	778248	A
SNP	293	971	1	778250	T
SUB	294	972,973	1	778254	2	CC
SNP	295	974	1	778323	T
SNP	296	975	1	778354	C
SNP	297	976	1	778358	G
SNP	298	977	1	778364	G
SNP	299	978	1	778410	G
SNP	300	979	1	778446	G
SNP	301	980	1	779310	A
SNP	302	981	1	779318	C
SNP	303	982	1	779320	T
SNP	304	985	1	794870	A
SNP	305	987	1	804458	C
SNP	306	988	1	805477	C
INS	307	989	1	806569	G
SNP	308	990	1	815235	C
SNP	309	992	1	831643	G
SNP	310	993	1	833193	C
INS	311	994	1	833559	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	312	995	1	843148	C
SNP	313	996	1	846243	C
SNP	314	998	1	851190	G
SNP	315	999	1	855490	A
DEL	316	1000	1	863136	1
SNP	317	1001	1	866382	T
SNP	318	1002	1	867187	T
SNP	319	1003	1	870359	T
SNP	320	1004	1	874360	G
SNP	321	1005	1	874829	A
SNP	322	1006	1	874954	G
SNP	323	1007	1	885706	A
SNP	324	1008	1	886421	T
SNP	325	1009	1	886900	C
SNP	326	1012	1	896161	G
SNP	327	1013	1	896244	G
SNP	328	1016	1	911867	G
SNP	329	1017	1	920917	G
SNP	330	1018	1	936852	A
SNP	331	1019	1	937665	A
SNP	332	1020	1	944486	A
SNP	333	1021	1	947244	C
SNP	334	1022	1	959296	C
DEL	335	1417	1	960296	11	repeat_length=11	repeat_new_copies=1	repeat_ref_copies=2	repeat_seq=AGTTACAATGT
SNP	336	1026	1	968437	T
SNP	337	1027	1	971582	T
SNP	338	1028	1	997437	A
SNP	339	1029	1	1000298	A
SNP	340	1030	1	1000361	T
INS	341	1031,1032	1	1003146	CT
SNP	342	1033	1	1012229	C
SNP	343	1034	1	1016448	C
SNP	344	1036	1	1024742	T
SNP	345	1037	1	1030472	G
SNP	346	1038	1	1030642	A
SNP	347	1039	1	1031163	A
SNP	348	1040	1	1038394	A
SNP	349	1041	1	1038563	T
SNP	350	1042	1	1039263	C
SNP	351	1043	1	1056058	A
SNP	352	1044	1	1061592	A
SNP	353	1045	1	1061970	G
SNP	354	1046	1	1069159	C
SNP	355	1047	1	1071456	C
SNP	356	1049	1	1078881	C
SNP	357	1050	1	1080800	C
SNP	358	1051	1	1099712	A
SNP	359	1052	1	1100008	T
SNP	360	1053	1	1114831	C
SNP	361	1055	1	1115710	C
SNP	362	1056	1	1119350	G
SNP	363	1057	1	1121864	C
SNP	364	1058	1	1133958	C
SNP	365	1059	1	1134460	T
SNP	366	1060	1	1147573	T
SNP	367	1061	1	1152140	A
SNP	368	1062	1	1152507	T
SNP	369	1063	1	1153316	A
SNP	370	1064	1	1155872	T
SNP	371	1067	1	1165044	T
SNP	372	1068	1	1165798	C
SNP	373	1069	1	1179339	C
SNP	374	1070	1	1181106	C
SNP	375	1071	1	1190794	T
SNP	376	1072	1	1197746	G
SNP	377	1073	1	1200621	C
SNP	378	1074	1	1203433	C
SNP	379	1075	1	1209184	A
SNP	380	1076	1	1215848	A
SNP	381	1077	1	1216310	T
SNP	382	1078	1	1217363	A
SNP	383	1079	1	1218105	T
SNP	384	1080	1	1223066	C
SNP	385	1084	1	1243840	C
DEL	386	1085	1	1243925	1
SNP	387	1086	1	1244043	C
SNP	388	1087	1	1253909	A
SNP	389	1088	1	1273160	T
SNP	390	1089	1	1273719	T
SNP	391	1090	1	1278291	G
SNP	392	1091	1	1288020	G
DEL	393	1374,1426	1	1289284	135
SNP	394	1092	1	1291246	A
SNP	395	1093	1	1292132	C
SNP	396	1094	1	1298171	C
SNP	397	1095	1	1301106	C
SNP	398	1096	1	1302254	T
SNP	399	1097	1	1303323	C
SNP	400	1098	1	1317436	C
SNP	401	1099	1	1321684	C
SNP	402	1100	1	1326214	C
SNP	403	1101	1	1326536	C
SNP	404	1102	1	1326830	C
SNP	405	1103	1	1329621	T
DEL	406	1430	1	1337407	5	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=CACCT
SNP	407	1104	1	1340494	C
SNP	408	1105	1	1342854	A
SNP	409	1107	1	1345901	T
SNP	410	1108	1	1349368	G
SNP	411	1110	1	1356260	C
SNP	412	1111	1	1357282	T
SNP	413	1112	1	1362878	A
SNP	414	1113	1	1367733	G
SNP	415	1114	1	1367736	A
SNP	416	1116	1	1391792	A
INS	417	1117,1118	1	1395394	CC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=C
SNP	418	1119	1	1400308	G
SNP	419	1120	1	1402555	C
SNP	420	1121	1	1404524	C
INS	421	1122	1	1416644	T
SNP	422	1123	1	1418807	C
SNP	423	1124	1	1419107	G
DEL	424	1375,1433	1	1420817	5	repeat_length=5	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=TGCCT
SNP	425	1125	1	1422176	G
SNP	426	1128	1	1456611	T
SNP	427	1129	1	1457237	A
SNP	428	1130	1	1461229	C
SNP	429	1131	1	1462217	C
SNP	430	1132	1	1464084	G
SNP	431	1133	1	1467233	T
SNP	432	1136	1	1478301	T
SNP	433	1137	1	1481387	C
SNP	434	1142	1	1481414	T
SNP	435	1143	1	1481420	T
SNP	436	1144	1	1481423	A
SNP	437	1145	1	1481429	G
SNP	438	1146	1	1481435	T
INS	439	1147	1	1481544	T
SUB	440	1148,1149	1	1481545	2	GA
SUB	441	1150,1151	1	1481549	2	AA
SUB	442	1152,1153,1154	1	1481553	2	TCA
SNP	443	1155	1	1481561	T
SUB	444	1156,1157	1	1481588	2	CC
SNP	445	1158	1	1481620	T
SUB	446	1159,1160,1161,1162	1	1481628	4	TACC
SNP	447	1163	1	1481633	A
SNP	448	1164	1	1481635	A
SNP	449	1165	1	1481801	C
SNP	450	1166	1	1481805	C
SNP	451	1167	1	1481815	C
SNP	452	1168	1	1481849	T
SUB	453	1169,1170	1	1481855	2	TC
SNP	454	1171	1	1481862	C
SNP	455	1172	1	1481866	T
SNP	456	1173	1	1481870	A
SUB	457	1174,1175,1176	1	1481873	3	GAA
SNP	458	1177	1	1481884	A
SNP	459	1178	1	1486242	G
SNP	460	1179	1	1487250	T
SNP	461	1181	1	1489617	A
SNP	462	1182	1	1491477	C
SNP	463	1183	1	1498379	G
SNP	464	1184	1	1500438	G
SNP	465	1185	1	1500876	C
SNP	466	1186	1	1505042	G
SNP	467	1187	1	1518265	C
SNP	468	1193	1	1522625	C
SNP	469	1194	1	1523674	T
SNP	470	1195	1	1525576	A
SNP	471	1196	1	1526627	A
INS	472	1197	1	1529486	C	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=C
SNP	473	1198	1	1531174	T
SNP	474	1199	1	1531813	C
SNP	475	1200	1	1532817	A
SNP	476	1201	1	1538376	G
SNP	477	1202	1	1540067	G
DEL	478	1377,1438	1	1542376	13	repeat_length=13	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GTAACGCCATTTG
SNP	479	1204	1	1544205	T
SNP	480	1205	1	1552077	G
SNP	481	1206	1	1553254	C
SNP	482	1207	1	1555942	C
SNP	483	1208	1	1560522	T
SNP	484	1209	1	1562958	C
SNP	485	1212	1	1568600	C
DEL	486	1213,1214	1	1571123	2	repeat_length=2	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=TA
SNP	487	1216	1	1573047	A
SNP	488	1217	1	1579154	T
SNP	489	1218	1	1582991	G
SNP	490	1220	1	1588108	G
SNP	491	1221	1	1590180	G
SNP	492	1222	1	1594935	T
SNP	493	1223	1	1595211	T
SNP	494	1224	1	1596143	A
SNP	495	1225	1	1599416	G
SNP	496	1226	1	1611559	C
SNP	497	1227	1	1618737	G
SNP	498	1228	1	1628619	G
SNP	499	1230	1	1637865	A
SNP	500	1231	1	1640983	C
SNP	501	1245	1	1648783	T
SNP	502	1247	1	1653537	T
SNP	503	1250	1	1670399	C
SNP	504	1251	1	1681397	C
SNP	505	1252	1	1690049	T
SNP	506	1253	1	1690517	C
SNP	507	1254	1	1693712	C
SNP	508	1256	1	1697543	G
SNP	509	1257	1	1697627	C
SNP	510	1262	1	1744156	T
SNP	511	1263	1	1744942	T
SNP	512	1264	1	1748466	G
SNP	513	1268	1	1748715	C
SNP	514	1269	1	1749558	G
SNP	515	1270	1	1751287	G
SNP	516	1271	1	1751590	G
SNP	517	1273	1	1756123	G
SNP	518	1274	1	1759793	A
SNP	519	1275	1	1764878	T
SNP	520	1276	1	1794175	C
SNP	521	1277	1	1800283	A
DEL	522	1278,1279	1	1800460	2	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=7	repeat_seq=T
SNP	523	1280	1	1802715	T
SNP	524	1281	1	1807432	G
SNP	525	1282	1	1812683	C
SNP	526	1283	1	1815121	A
SNP	527	1284	1	1815619	C
SNP	528	1285	1	1822617	C
SNP	529	1286	1	1834846	A
SNP	530	1287	1	1835677	A
SNP	531	1288	1	1836967	C
SNP	532	1289	1	1837578	C
SNP	533	1290	1	1838098	C
SNP	534	1291	1	1847165	A
SNP	535	1292	1	1853672	A
SNP	536	1295	1	1857068	G
SNP	537	1296	1	1857240	G
SNP	538	1301	1	1866211	G
SNP	539	1302	1	1889308	C
SNP	540	1303	1	1892783	G
SNP	541	1304	1	1894474	A
SNP	542	1305	1	1894660	T
SNP	543	1306	1	1896489	C
SNP	544	1307	1	1898039	C
DEL	545	1456	1	1903171	32	repeat_length=4	repeat_new_copies=12	repeat_ref_copies=20	repeat_seq=TTTG
SNP	546	1308	1	1905090	C
SNP	547	1310	1	1930004	T
SNP	548	1311	1	1942424	G
SNP	549	1312	1	1952356	G
SNP	550	1313	1	1954112	C
SNP	551	1314	1	1955320	C
SNP	552	1315	1	1957085	T
SNP	553	1317	1	1959496	C
SNP	554	1323	1	1975733	C
SNP	555	1324	1	1978693	A
SNP	556	1325	1	1982729	A
DEL	557	1327	1	1984969	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	558	1332	1	1992592	A
SNP	559	1333	1	1994532	A
SNP	560	1334	1	2002089	A
SNP	561	1335	1	2005456	G
SNP	562	1337	1	2015388	T
SNP	563	1338	1	2022399	G
SNP	564	1339	1	2023545	A
SNP	565	1340	1	2024332	G
SNP	566	1341	1	2028516	T
SNP	567	1342	1	2032886	A
SNP	568	1344	1	2045297	A
SNP	569	1345	1	2046968	A
SNP	570	1346	1	2051727	T
INS	571	1461	1	2066573	AGTCC
SNP	572	1348	1	2078424	C
INS	573	1462	1	2081916	CGCCC	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=2	repeat_seq=CGCCC
SNP	574	1350	1	2084518	C
SNP	575	1352	1	2086373	G
SNP	576	1353	1	2088197	A
SNP	577	1354	1	2089546	T
SNP	578	1355	1	2092109	C
SNP	579	1356	1	2095862	G
SNP	580	1357	1	2103464	T
SNP	581	1358	1	2104404	A
SNP	582	1359	1	2105200	G
SNP	583	1360	1	2109648	G
SNP	584	1363	1	2127968	C
SNP	585	1364	1	2134206	C
SNP	586	1366	1	2143088	G
SNP	587	1370	1	2147102	C
SNP	588	1371	1	2147731	A
RA	589	.	1	4364	0	C	T	consensus_score=163.7	frequency=1	major_base=T	major_cov=26/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/23
RA	590	.	1	8758	0	T	A	consensus_score=296.1	frequency=1	major_base=A	major_cov=30/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/55
RA	591	.	1	9813	0	T	C	consensus_score=360.5	frequency=1	major_base=C	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	592	.	1	11294	0	T	C	consensus_score=245.3	frequency=1	major_base=C	major_cov=35/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/38
RA	593	.	1	12908	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=292.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=44/40	major_frequency=9.882e-01	minor_base=C	minor_cov=1/0	new_cov=44/40	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/40
RA	594	.	1	17305	0	G	C	consensus_score=380.1	frequency=1	major_base=C	major_cov=57/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/53
RA	595	.	1	20737	0	G	A	consensus_score=259.1	frequency=1	major_base=A	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	596	.	1	23122	0	T	G	bias_e_value=1.5705e-05	bias_p_value=7.27679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.0	fisher_strand_p_value=2.42163e-13	frequency=3.605e-01	ks_quality_p_value=1	major_base=T	major_cov=13/42	major_frequency=6.395e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.605e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=13/42	total_cov=45/42
RA	597	.	1	48162	0	T	G	bias_e_value=4.20899e-10	bias_p_value=1.9502e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.4	fisher_strand_p_value=4.77007e-18	frequency=3.458e-01	ks_quality_p_value=1	major_base=T	major_cov=13/57	major_frequency=6.542e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.458e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=13/57	total_cov=53/57
RA	598	.	1	48386	0	A	C	bias_e_value=28.6416	bias_p_value=1.32709e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.5	fisher_strand_p_value=8.88662e-07	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=36/18	major_frequency=7.714e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=36/18	total_cov=36/34
RA	599	.	1	48415	0	T	C	bias_e_value=0.00571381	bias_p_value=2.64745e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.2	fisher_strand_p_value=1.10658e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=35/9	major_frequency=6.667e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=35/9	total_cov=35/31
RA	600	.	1	48421	0	A	C	bias_e_value=0.0672921	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.5	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=7.015e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.985e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=36/11	total_cov=36/32
RA	601	.	1	48425	0	G	T	bias_e_value=1.8384	bias_p_value=8.51809e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.3	fisher_strand_p_value=4.7698e-08	frequency=2.581e-01	ks_quality_p_value=1	major_base=G	major_cov=35/11	major_frequency=7.419e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.581e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=35/11	total_cov=35/27
RA	602	.	1	48435	0	C	A	bias_e_value=0.0158696	bias_p_value=7.35309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.9	fisher_strand_p_value=3.21694e-10	frequency=3.167e-01	ks_quality_p_value=1	major_base=C	major_cov=34/7	major_frequency=6.833e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.167e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=34/7	total_cov=34/26
RA	603	.	1	48457	0	G	C	bias_e_value=0.10206	bias_p_value=4.72887e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.5	fisher_strand_p_value=2.26185e-09	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=37/11	major_frequency=7.164e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=37/11	total_cov=37/30
RA	604	.	1	58048	0	T	C	consensus_score=273.3	frequency=1	major_base=C	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	605	.	1	58583	0	C	A	bias_e_value=8.6702e-08	bias_p_value=4.01728e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.4	fisher_strand_p_value=1.13442e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=55/13	major_frequency=6.869e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.131e-01	polymorphism_score=31.2	prediction=polymorphism	ref_cov=55/13	total_cov=55/44
RA	606	.	1	58594	0	T	C	bias_e_value=4.28894e-05	bias_p_value=1.98725e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.4	fisher_strand_p_value=6.85039e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=57/20	major_frequency=7.333e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=57/20	total_cov=57/48
RA	607	.	1	58624	0	G	A	bias_e_value=1.24021e-10	bias_p_value=5.74641e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.8	fisher_strand_p_value=1.36377e-18	frequency=3.091e-01	ks_quality_p_value=1	major_base=G	major_cov=64/12	major_frequency=6.909e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.091e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=64/12	total_cov=64/46
RA	608	.	1	58635	0	G	T	bias_e_value=3.49463e-06	bias_p_value=1.61921e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.3	fisher_strand_p_value=5.12372e-14	frequency=2.586e-01	ks_quality_p_value=1	major_base=G	major_cov=64/22	major_frequency=7.414e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.586e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=64/22	total_cov=64/52
RA	609	.	1	58645	0	G	A	bias_e_value=1.08481e-06	bias_p_value=5.02638e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.6	fisher_strand_p_value=1.53198e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=G	major_cov=68/19	major_frequency=7.565e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.435e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=68/19	total_cov=68/52
RA	610	.	1	58648	0	A	C	bias_e_value=3.86962e-07	bias_p_value=1.79296e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.6	fisher_strand_p_value=5.29329e-15	frequency=2.672e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.328e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.672e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=65/20	total_cov=65/52
RA	611	.	1	70844	0	G	T	consensus_score=406.8	frequency=1	major_base=T	major_cov=50/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/68
RA	612	.	1	77012	0	T	C	consensus_score=376.6	frequency=1	major_base=C	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	613	.	1	78945	0	C	T	consensus_score=161.2	frequency=1	major_base=T	major_cov=17/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/32
RA	614	.	1	78960	0	C	T	consensus_score=159.3	frequency=1	major_base=T	major_cov=17/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/30
RA	615	.	1	79478	0	T	C	consensus_score=383.8	frequency=1	major_base=C	major_cov=67/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/43
RA	616	.	1	85738	0	C	T	consensus_score=341.6	frequency=1	major_base=T	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	617	.	1	87010	1	.	T	bias_e_value=1626220	bias_p_value=0.753497	consensus_score=420.3	fisher_strand_p_value=0.386555	frequency=1	ks_quality_p_value=0.998719	major_base=T	major_cov=73/45	major_frequency=9.916e-01	minor_base=.	minor_cov=0/1	new_cov=73/45	polymorphism_frequency=9.916e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=73/46
RA	618	.	1	89985	0	G	A	consensus_score=192.4	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	619	.	1	96293	0	T	C	consensus_score=349.0	frequency=1	major_base=C	major_cov=45/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/61
RA	620	.	1	115056	0	G	A	consensus_score=162.3	frequency=1	major_base=A	major_cov=28/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/20
RA	621	.	1	124314	0	C	T	consensus_score=427.0	frequency=1	major_base=T	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	622	.	1	129387	0	C	T	consensus_score=449.7	frequency=1	major_base=T	major_cov=61/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/67
RA	623	.	1	132030	0	A	G	consensus_score=363.8	frequency=1	major_base=G	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	624	.	1	135867	0	G	.	consensus_score=466.6	frequency=1	major_base=.	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	625	.	1	135970	0	T	C	consensus_score=370.0	frequency=1	major_base=C	major_cov=51/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/58
RA	626	.	1	139527	0	T	G	bias_e_value=0.000836091	bias_p_value=3.87397e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.8	fisher_strand_p_value=1.50241e-11	frequency=2.083e-01	ks_quality_p_value=0.994533	major_base=T	major_cov=15/61	major_frequency=7.917e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.083e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/61	total_cov=35/61
RA	627	.	1	139561	0	G	A	bias_e_value=0.00100961	bias_p_value=4.67794e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.1	fisher_strand_p_value=1.81804e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=14/62	major_frequency=8.000e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.000e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/62	total_cov=33/62
RA	628	.	1	140424	0	C	T	consensus_score=161.4	frequency=1	major_base=T	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	629	.	1	141515	0	A	G	consensus_score=432.5	frequency=1	major_base=G	major_cov=57/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/69
RA	630	.	1	152672	0	G	T	consensus_score=356.2	frequency=1	major_base=T	major_cov=58/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/43
RA	631	.	1	156938	0	G	A	bias_e_value=2.10562e-05	bias_p_value=9.75623e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.6	fisher_strand_p_value=3.27987e-13	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=65/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.414e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=65/23	total_cov=65/52
RA	632	.	1	157012	0	G	T	bias_e_value=3.67706e-07	bias_p_value=1.70374e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.0	fisher_strand_p_value=5.02209e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=G	major_cov=14/46	major_frequency=6.250e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=14/46	total_cov=50/46
RA	633	.	1	157050	0	G	A	bias_e_value=0.892528	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.2	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	634	.	1	157486	0	C	T	consensus_score=308.3	frequency=1	major_base=T	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	635	.	1	157749	0	G	A	consensus_score=392.3	frequency=1	major_base=A	major_cov=53/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/58
RA	636	.	1	162551	0	T	A	bias_e_value=0.492083	bias_p_value=2.28003e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.7	fisher_strand_p_value=1.18434e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=23/46	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=23/46	total_cov=45/46
RA	637	.	1	162571	0	G	A	bias_e_value=0.494128	bias_p_value=2.28951e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.4	fisher_strand_p_value=1.18953e-08	frequency=2.323e-01	ks_quality_p_value=1	major_base=G	major_cov=28/48	major_frequency=7.677e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.323e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=28/48	total_cov=51/48
RA	638	.	1	165841	0	G	A	consensus_score=465.0	frequency=1	major_base=A	major_cov=59/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/73
RA	639	.	1	173700	0	T	C	consensus_score=362.0	frequency=1	major_base=C	major_cov=53/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/51
RA	640	.	1	175178	0	A	G	consensus_score=503.1	frequency=1	major_base=G	major_cov=78/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/67
RA	641	.	1	182278	0	C	T	consensus_score=360.7	frequency=1	major_base=T	major_cov=56/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	642	.	1	190241	0	A	G	consensus_score=284.8	frequency=1	major_base=G	major_cov=46/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/38
RA	643	.	1	196663	0	G	T	consensus_score=486.3	frequency=1	major_base=T	major_cov=65/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/70
RA	644	.	1	199402	0	C	T	consensus_score=359.7	frequency=1	major_base=T	major_cov=52/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/54
RA	645	.	1	200370	0	C	T	consensus_score=421.6	frequency=1	major_base=T	major_cov=61/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/57
RA	646	.	1	217645	0	G	T	bias_e_value=1.02451e-05	bias_p_value=4.74698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.5	fisher_strand_p_value=1.55685e-13	frequency=2.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/14	major_frequency=7.905e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.095e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=69/14	total_cov=69/36
RA	647	.	1	218866	0	G	A	consensus_score=404.4	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	648	.	1	224559	0	T	C	consensus_score=242.4	frequency=1	major_base=C	major_cov=29/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/41
RA	649	.	1	230734	0	G	A	consensus_score=334.2	frequency=1	major_base=A	major_cov=39/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/60
RA	650	.	1	230755	0	G	A	consensus_score=282.3	frequency=1	major_base=A	major_cov=33/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/51
RA	651	.	1	237606	0	T	G	consensus_score=264.3	frequency=1	major_base=G	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	652	.	1	247214	0	C	A	consensus_score=383.2	frequency=1	major_base=A	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	653	.	1	247549	0	A	C	bias_e_value=4.05028e-05	bias_p_value=1.87667e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.7	fisher_strand_p_value=6.456e-13	frequency=2.809e-01	ks_quality_p_value=1	major_base=A	major_cov=13/51	major_frequency=7.191e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=13/51	total_cov=38/52
RA	654	.	1	247567	0	T	A	bias_e_value=0.000322386	bias_p_value=1.49376e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.2	fisher_strand_p_value=5.54942e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=13/47	major_frequency=7.143e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.857e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=13/47	total_cov=37/53
RA	655	.	1	247575	0	G	A	bias_e_value=3.08842	bias_p_value=1.431e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.6	fisher_strand_p_value=8.26768e-08	frequency=2.135e-01	ks_quality_p_value=1	major_base=G	major_cov=19/51	major_frequency=7.865e-01	minor_base=A	minor_cov=18/1	new_cov=18/1	polymorphism_frequency=2.135e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=19/51	total_cov=38/52
RA	656	.	1	247612	0	A	C	bias_e_value=1.67004	bias_p_value=7.73803e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.0	fisher_strand_p_value=4.30845e-08	frequency=2.644e-01	ks_quality_p_value=1	major_base=A	major_cov=44/20	major_frequency=7.356e-01	minor_base=C	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.644e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=44/20	total_cov=45/42
RA	657	.	1	247686	0	A	C	bias_e_value=2.79755e-07	bias_p_value=1.29623e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.2	fisher_strand_p_value=3.78941e-15	frequency=3.370e-01	ks_quality_p_value=1	major_base=A	major_cov=52/9	major_frequency=6.630e-01	minor_base=C	minor_cov=1/30	new_cov=1/30	polymorphism_frequency=3.370e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=52/9	total_cov=54/39
RA	658	.	1	248479	0	T	A	bias_e_value=0.0929826	bias_p_value=4.30829e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.9	fisher_strand_p_value=2.05109e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=66/26	major_frequency=8.000e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.000e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=66/26	total_cov=68/49
RA	659	.	1	261979	0	A	G	bias_e_value=0.1818	bias_p_value=8.42359e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.1	fisher_strand_p_value=4.1495e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=A	major_cov=23/42	major_frequency=7.222e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=23/42	total_cov=48/42
RA	660	.	1	273492	0	G	A	consensus_score=273.4	frequency=1	major_base=A	major_cov=33/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/46
RA	661	.	1	276001	0	T	C	consensus_score=154.8	frequency=1	major_base=C	major_cov=27/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/18
RA	662	.	1	277921	0	A	G	consensus_score=259.1	frequency=1	major_base=G	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	663	.	1	279011	0	T	C	consensus_score=334.5	frequency=1	major_base=C	major_cov=53/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/41
RA	664	.	1	279734	0	G	A	bias_e_value=0.0746958	bias_p_value=3.46098e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.0	fisher_strand_p_value=1.62986e-09	frequency=2.794e-01	ks_quality_p_value=1	major_base=G	major_cov=38/11	major_frequency=7.206e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.794e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=38/11	total_cov=38/30
RA	665	.	1	279754	0	C	A	bias_e_value=0.0746169	bias_p_value=3.45732e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.4	fisher_strand_p_value=1.62806e-09	frequency=2.676e-01	ks_quality_p_value=1	major_base=C	major_cov=40/12	major_frequency=7.324e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.676e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=40/12	total_cov=40/31
RA	666	.	1	280572	0	G	.	consensus_score=293.6	frequency=1	major_base=.	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	667	.	1	280785	0	G	A	consensus_score=211.1	frequency=1	major_base=A	major_cov=35/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/27
RA	668	.	1	286332	0	C	T	consensus_score=264.9	frequency=1	major_base=T	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	669	.	1	303305	0	T	G	consensus_score=412.1	frequency=1	major_base=G	major_cov=55/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/61
RA	670	.	1	304206	0	A	G	consensus_score=459.5	frequency=1	major_base=G	major_cov=57/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/78
RA	671	.	1	315902	0	T	C	bias_e_value=23.6435	bias_p_value=1.0955e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.1	fisher_strand_p_value=7.23631e-07	frequency=2.308e-01	ks_quality_p_value=1	major_base=T	major_cov=41/39	major_frequency=7.692e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.308e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=41/39	total_cov=41/63
RA	672	.	1	315923	0	A	C	bias_e_value=3.77477	bias_p_value=1.74901e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.7	fisher_strand_p_value=1.0231e-07	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=41/35	major_frequency=7.451e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.549e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=41/35	total_cov=41/62
RA	673	.	1	315950	0	A	C	bias_e_value=1.02836e-10	bias_p_value=4.76485e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.2	fisher_strand_p_value=1.12569e-18	frequency=3.956e-01	ks_quality_p_value=1	major_base=A	major_cov=48/7	major_frequency=6.044e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.956e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=48/7	total_cov=48/43
RA	674	.	1	323209	0	G	A	bias_e_value=975476	bias_p_value=0.45198	consensus_score=404.0	fisher_strand_p_value=0.159328	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=73/47	major_frequency=9.836e-01	minor_base=T	minor_cov=0/2	new_cov=73/47	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/49
RA	675	.	1	324072	0	G	A	consensus_score=348.9	frequency=1	major_base=A	major_cov=62/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/40
RA	676	.	1	330230	0	A	G	consensus_score=338.0	frequency=1	major_base=G	major_cov=53/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/47
RA	677	.	1	334810	0	A	C	bias_e_value=4.17396e-05	bias_p_value=1.93397e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.1	fisher_strand_p_value=6.66027e-13	frequency=3.455e-01	ks_quality_p_value=1	major_base=A	major_cov=47/25	major_frequency=6.545e-01	minor_base=C	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=3.455e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=47/25	total_cov=47/63
RA	678	.	1	346554	0	G	T	consensus_score=126.1	frequency=1	major_base=T	major_cov=14/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	679	.	1	350636	0	A	G	consensus_score=185.7	frequency=1	major_base=G	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	680	.	1	351523	0	G	A	consensus_score=283.8	frequency=1	major_base=A	major_cov=37/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/45
RA	681	.	1	373264	0	C	T	bias_e_value=2.4115	bias_p_value=1.11735e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.9	fisher_strand_p_value=6.35916e-08	frequency=2.233e-01	ks_quality_p_value=1	major_base=C	major_cov=48/32	major_frequency=7.767e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.233e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=48/32	total_cov=48/55
RA	682	.	1	375236	0	C	T	bias_e_value=0.00321311	bias_p_value=1.48877e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.1	fisher_strand_p_value=6.1337e-11	frequency=2.800e-01	ks_quality_p_value=0.989683	major_base=C	major_cov=11/43	major_frequency=7.200e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=24.1	prediction=polymorphism	ref_cov=11/43	total_cov=33/43
RA	683	.	1	375245	0	G	C	bias_e_value=2.65078	bias_p_value=1.22822e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.3	fisher_strand_p_value=7.23412e-08	frequency=2.179e-01	ks_quality_p_value=0.971821	major_base=G	major_cov=18/43	major_frequency=7.821e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.179e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=18/43	total_cov=35/43
RA	684	.	1	380976	0	T	C	consensus_score=334.0	frequency=1	major_base=C	major_cov=41/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/53
RA	685	.	1	381427	0	G	A	bias_e_value=1.11388e-05	bias_p_value=5.16106e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.1	fisher_strand_p_value=1.69747e-13	frequency=3.059e-01	ks_quality_p_value=1	major_base=G	major_cov=11/48	major_frequency=6.941e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.059e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=11/48	total_cov=37/48
RA	686	.	1	381469	0	T	A	bias_e_value=9.04209	bias_p_value=4.18959e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.0	fisher_strand_p_value=2.59164e-07	frequency=2.247e-01	ks_quality_p_value=1	major_base=T	major_cov=27/42	major_frequency=7.753e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.247e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=27/42	total_cov=47/42
RA	687	.	1	384689	0	T	C	consensus_score=359.7	frequency=1	major_base=C	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	688	.	1	386605	0	C	T	bias_e_value=0.181047	bias_p_value=8.38869e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.3	fisher_strand_p_value=4.13142e-09	frequency=2.360e-01	ks_quality_p_value=1	major_base=C	major_cov=21/47	major_frequency=7.640e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.360e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=21/47	total_cov=45/47
RA	689	.	1	386609	0	T	G	bias_e_value=0.00226794	bias_p_value=1.05084e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.0	fisher_strand_p_value=4.22224e-11	frequency=2.841e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.159e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.841e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=17/46	total_cov=43/46
RA	690	.	1	386635	0	C	T	bias_e_value=0.000108853	bias_p_value=5.04361e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.7	fisher_strand_p_value=1.79846e-12	frequency=2.809e-01	ks_quality_p_value=1	major_base=C	major_cov=14/50	major_frequency=7.191e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.809e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=14/50	total_cov=40/50
RA	691	.	1	386639	0	C	T	bias_e_value=0.120964	bias_p_value=5.60479e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.5	fisher_strand_p_value=2.70389e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=20/50	major_frequency=7.778e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=20/50	total_cov=40/50
RA	692	.	1	386659	0	G	T	bias_e_value=3.1744e-05	bias_p_value=1.47084e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.9	fisher_strand_p_value=5.01634e-13	frequency=2.688e-01	ks_quality_p_value=1	major_base=G	major_cov=14/54	major_frequency=7.312e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.688e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=14/54	total_cov=39/54
RA	693	.	1	387718	0	C	A	consensus_score=322.8	frequency=1	major_base=A	major_cov=49/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/40
RA	694	.	1	400345	0	T	G	consensus_score=135.6	frequency=1	major_base=G	major_cov=26/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/13
RA	695	.	1	402614	0	G	A	consensus_score=332.5	frequency=1	major_base=A	major_cov=47/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/49
RA	696	.	1	406224	0	T	G	consensus_score=348.2	frequency=1	major_base=G	major_cov=44/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/56
RA	697	.	1	416744	0	C	A	bias_e_value=0.000827949	bias_p_value=3.83624e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.1	fisher_strand_p_value=1.47906e-11	frequency=2.268e-01	ks_quality_p_value=1	major_base=C	major_cov=58/17	major_frequency=7.732e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.268e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=58/17	total_cov=58/39
RA	698	.	1	416780	0	G	A	bias_e_value=0.00858953	bias_p_value=3.9799e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.7	fisher_strand_p_value=1.69365e-10	frequency=2.333e-01	ks_quality_p_value=1	major_base=G	major_cov=52/17	major_frequency=7.667e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.333e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=52/17	total_cov=52/38
RA	699	.	1	416793	0	A	C	bias_e_value=7.87595e-09	bias_p_value=3.64926e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.6	fisher_strand_p_value=9.6341e-17	frequency=3.226e-01	ks_quality_p_value=1	major_base=A	major_cov=54/9	major_frequency=6.774e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.226e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=54/9	total_cov=54/39
RA	700	.	1	420573	0	C	A	consensus_score=495.4	frequency=1	major_base=A	major_cov=66/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/77
RA	701	.	1	426309	0	A	G	consensus_score=329.8	frequency=1	major_base=G	major_cov=52/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/42
RA	702	.	1	429955	0	T	G	bias_e_value=1.38089e-09	bias_p_value=6.39825e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.1	fisher_strand_p_value=1.61304e-17	frequency=2.891e-01	ks_quality_p_value=1	major_base=T	major_cov=21/70	major_frequency=7.109e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.891e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=21/70	total_cov=58/70
RA	703	.	1	447426	0	A	G	consensus_score=413.3	frequency=1	major_base=G	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	704	.	1	449323	0	G	A	bias_e_value=58.0122	bias_p_value=2.68795e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.1	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=0.888919	major_base=G	major_cov=23/37	major_frequency=7.792e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.208e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=23/37	total_cov=41/37
RA	705	.	1	449352	0	T	A	bias_e_value=117.315	bias_p_value=5.43573e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.5	fisher_strand_p_value=4.05155e-06	frequency=2.821e-01	ks_quality_p_value=1	major_base=T	major_cov=27/29	major_frequency=7.179e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.821e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=27/29	total_cov=50/29
RA	706	.	1	454952	0	G	A	consensus_score=455.4	frequency=1	major_base=A	major_cov=60/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/73
RA	707	.	1	456461	0	G	T	consensus_score=384.8	frequency=1	major_base=T	major_cov=56/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	708	.	1	458123	0	A	C	bias_e_value=1.46552e-10	bias_p_value=6.79038e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.7	fisher_strand_p_value=1.6181e-18	frequency=2.835e-01	ks_quality_p_value=1	major_base=A	major_cov=73/18	major_frequency=7.165e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.835e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=73/18	total_cov=73/54
RA	709	.	1	468489	0	C	T	bias_e_value=1714650	bias_p_value=0.79447	consensus_score=452.1	fisher_strand_p_value=0.435115	frequency=1	ks_quality_p_value=0.992512	major_base=T	major_cov=74/56	major_frequency=9.924e-01	minor_base=C	minor_cov=0/1	new_cov=74/56	polymorphism_frequency=9.924e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=74/57
RA	710	.	1	470400	0	G	A	consensus_score=369.8	frequency=1	major_base=A	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	711	.	1	472196	0	G	T	bias_e_value=0.00136912	bias_p_value=6.34373e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.2	fisher_strand_p_value=2.49619e-11	frequency=2.193e-01	ks_quality_p_value=1	major_base=G	major_cov=26/63	major_frequency=7.807e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.193e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=26/63	total_cov=51/63
RA	712	.	1	472204	0	G	A	bias_e_value=0.00250782	bias_p_value=1.16198e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.5	fisher_strand_p_value=4.68856e-11	frequency=2.162e-01	ks_quality_p_value=1	major_base=G	major_cov=25/62	major_frequency=7.838e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.162e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=25/62	total_cov=49/62
RA	713	.	1	474201	0	C	T	consensus_score=268.6	frequency=1	major_base=T	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	714	.	1	476697	0	T	C	consensus_score=359.5	frequency=1	major_base=C	major_cov=59/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/46
RA	715	.	1	476998	0	T	C	consensus_score=484.5	frequency=1	major_base=C	major_cov=59/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/82
RA	716	.	1	480788	0	T	C	bias_e_value=2158170	bias_p_value=0.999972	consensus_score=259.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9925	major_base=C	major_cov=21/60	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=21/60	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/61
RA	717	.	1	480811	0	T	C	consensus_score=256.7	frequency=1	major_base=C	major_cov=16/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/67
RA	718	.	1	481886	0	G	A	bias_e_value=0.178585	bias_p_value=8.27461e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.4	fisher_strand_p_value=4.07234e-09	frequency=2.254e-01	ks_quality_p_value=1	major_base=G	major_cov=44/11	major_frequency=7.746e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.254e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=44/11	total_cov=44/27
RA	719	.	1	481942	0	T	C	bias_e_value=0.0114995	bias_p_value=5.32821e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.0	fisher_strand_p_value=2.29722e-10	frequency=2.254e-01	ks_quality_p_value=1	major_base=T	major_cov=47/8	major_frequency=7.746e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.254e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=47/8	total_cov=47/25
RA	720	.	1	484596	0	G	T	bias_e_value=0.71057	bias_p_value=3.29238e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.3	fisher_strand_p_value=1.74535e-08	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=49/20	major_frequency=7.931e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.069e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=49/20	total_cov=49/39
RA	721	.	1	484610	0	C	A	bias_e_value=6.35115e-05	bias_p_value=2.94276e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.6	fisher_strand_p_value=1.02884e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=56/12	major_frequency=7.556e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=56/12	total_cov=56/34
RA	722	.	1	485192	0	T	G	bias_e_value=1.58264e-08	bias_p_value=7.33307e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.7	fisher_strand_p_value=1.97329e-16	frequency=3.209e-01	ks_quality_p_value=1	major_base=T	major_cov=28/63	major_frequency=6.791e-01	minor_base=G	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.209e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=28/63	total_cov=72/63
RA	723	.	1	485789	0	T	C	bias_e_value=0.00994016	bias_p_value=4.6057e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.0	fisher_strand_p_value=1.97277e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=T	major_cov=60/39	major_frequency=7.674e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.326e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=60/39	total_cov=60/71
RA	724	.	1	487688	0	G	A	consensus_score=299.3	frequency=1	major_base=A	major_cov=55/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/37
RA	725	.	1	487724	0	C	A	bias_e_value=2.00801e-08	bias_p_value=9.30396e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.6	fisher_strand_p_value=2.52024e-16	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=58/6	major_frequency=7.273e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.727e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=58/6	total_cov=58/30
RA	726	.	1	488318	0	T	C	consensus_score=462.2	frequency=1	major_base=C	major_cov=69/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/63
RA	727	.	1	496025	0	A	G	consensus_score=359.1	frequency=1	major_base=G	major_cov=56/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	728	.	1	496660	0	A	G	bias_e_value=6.90695e-08	bias_p_value=3.20029e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=8.97781e-16	frequency=2.796e-01	ks_quality_p_value=1	major_base=A	major_cov=9/58	major_frequency=7.204e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.796e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=9/58	total_cov=36/58
RA	729	.	1	505268	0	G	A	consensus_score=238.8	frequency=1	major_base=A	major_cov=43/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/27
RA	730	.	1	506901	0	A	C	consensus_score=388.1	frequency=1	major_base=C	major_cov=55/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/54
RA	731	.	1	508994	0	G	A	consensus_score=302.9	frequency=1	major_base=A	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	732	.	1	511351	0	G	A	consensus_score=289.6	frequency=1	major_base=A	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	733	.	1	517713	0	G	C	consensus_score=338.0	frequency=1	major_base=C	major_cov=61/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/36
RA	734	.	1	517971	0	T	A	bias_e_value=0.102451	bias_p_value=4.74701e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.9	fisher_strand_p_value=2.27096e-09	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=48/15	major_frequency=7.778e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.222e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=48/15	total_cov=48/33
RA	735	.	1	524986	0	T	C	consensus_score=444.2	frequency=1	major_base=C	major_cov=62/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/64
RA	736	.	1	526276	0	G	A	consensus_score=365.4	frequency=1	major_base=A	major_cov=58/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/46
RA	737	.	1	526792	0	C	T	consensus_score=392.3	frequency=1	major_base=T	major_cov=62/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/51
RA	738	.	1	533871	0	A	G	consensus_score=482.5	frequency=1	major_base=G	major_cov=72/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/63
RA	739	.	1	535939	0	A	G	consensus_score=433.9	frequency=1	major_base=G	major_cov=61/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/66
RA	740	.	1	536536	0	C	T	consensus_score=393.7	frequency=1	major_base=T	major_cov=62/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/54
RA	741	.	1	539627	0	G	A	bias_e_value=0.0299354	bias_p_value=1.38704e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.2	fisher_strand_p_value=6.24981e-10	frequency=2.033e-01	ks_quality_p_value=1	major_base=G	major_cov=63/35	major_frequency=7.967e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.033e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=63/35	total_cov=63/60
RA	742	.	1	539652	0	G	A	bias_e_value=2.37344e-09	bias_p_value=1.09972e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.3	fisher_strand_p_value=2.81185e-17	frequency=2.917e-01	ks_quality_p_value=1	major_base=G	major_cov=67/18	major_frequency=7.083e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.917e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=67/18	total_cov=67/53
RA	743	.	1	539669	0	A	C	bias_e_value=5.88618e-10	bias_p_value=2.72732e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.5	fisher_strand_p_value=6.72742e-18	frequency=3.241e-01	ks_quality_p_value=1	major_base=A	major_cov=60/13	major_frequency=6.759e-01	minor_base=C	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.241e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=60/13	total_cov=60/48
RA	744	.	1	539681	0	T	A	bias_e_value=4.79307e-10	bias_p_value=2.22083e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.1	fisher_strand_p_value=5.44977e-18	frequency=3.486e-01	ks_quality_p_value=1	major_base=T	major_cov=57/14	major_frequency=6.514e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=3.486e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=57/14	total_cov=57/52
RA	745	.	1	539690	0	G	A	bias_e_value=0.190344	bias_p_value=8.81944e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.7	fisher_strand_p_value=4.35485e-09	frequency=2.150e-01	ks_quality_p_value=1	major_base=G	major_cov=54/30	major_frequency=7.850e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.150e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=54/30	total_cov=54/55
RA	746	.	1	539697	0	G	A	bias_e_value=0.235542	bias_p_value=1.09137e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.5	fisher_strand_p_value=5.44926e-09	frequency=2.182e-01	ks_quality_p_value=1	major_base=G	major_cov=54/32	major_frequency=7.818e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.182e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=54/32	total_cov=54/56
RA	747	.	1	553282	0	C	A	consensus_score=439.7	frequency=1	major_base=A	major_cov=64/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/63
RA	748	.	1	554687	0	A	C	consensus_score=496.8	frequency=1	major_base=C	major_cov=74/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/70
RA	749	.	1	554761	0	T	C	consensus_score=525.2	frequency=1	major_base=C	major_cov=78/78	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/78	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/78
RA	750	.	1	559599	0	T	C	consensus_score=497.5	frequency=1	major_base=C	major_cov=67/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/77
RA	751	.	1	563298	0	G	T	consensus_score=418.4	frequency=1	major_base=T	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	752	.	1	573033	0	A	G	bias_e_value=7.55148e-10	bias_p_value=3.49893e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.2	fisher_strand_p_value=8.68546e-18	frequency=3.111e-01	ks_quality_p_value=1	major_base=A	major_cov=6/56	major_frequency=6.889e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.111e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=6/56	total_cov=34/56
RA	753	.	1	573084	0	C	T	bias_e_value=0.00226488	bias_p_value=1.04942e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.3	fisher_strand_p_value=4.2163e-11	frequency=2.366e-01	ks_quality_p_value=1	major_base=C	major_cov=17/54	major_frequency=7.634e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.366e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=17/54	total_cov=39/54
RA	754	.	1	580765	0	A	T	bias_e_value=8.40429e-05	bias_p_value=3.89407e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.6	fisher_strand_p_value=1.3754e-12	frequency=2.371e-01	ks_quality_p_value=1	major_base=A	major_cov=59/15	major_frequency=7.629e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.371e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=59/15	total_cov=59/38
RA	755	.	1	580787	0	C	T	bias_e_value=5.98556e-12	bias_p_value=2.77337e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.3	fisher_strand_p_value=6.13055e-20	frequency=3.483e-01	ks_quality_p_value=1	major_base=C	major_cov=54/4	major_frequency=6.517e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.483e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=54/4	total_cov=54/36
RA	756	.	1	580798	0	A	T	bias_e_value=0.000748742	bias_p_value=3.46924e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.1	fisher_strand_p_value=1.33219e-11	frequency=2.418e-01	ks_quality_p_value=1	major_base=A	major_cov=54/15	major_frequency=7.582e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.418e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=54/15	total_cov=54/37
RA	757	.	1	580823	0	G	T	bias_e_value=0.0756193	bias_p_value=3.50377e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.8	fisher_strand_p_value=1.65102e-09	frequency=2.174e-01	ks_quality_p_value=1	major_base=G	major_cov=52/20	major_frequency=7.826e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.174e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=52/20	total_cov=52/40
RA	758	.	1	586666	0	T	G	bias_e_value=3.14697e-06	bias_p_value=1.45813e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.3	fisher_strand_p_value=4.59824e-14	frequency=2.742e-01	ks_quality_p_value=1	major_base=T	major_cov=27/63	major_frequency=7.258e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.742e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=27/63	total_cov=61/63
RA	759	.	1	586729	0	T	G	bias_e_value=5.81933e-07	bias_p_value=2.69634e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.8	fisher_strand_p_value=8.06038e-15	frequency=3.252e-01	ks_quality_p_value=1	major_base=T	major_cov=26/57	major_frequency=6.748e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=3.252e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=26/57	total_cov=66/57
RA	760	.	1	602471	0	G	T	bias_e_value=2.38892e-07	bias_p_value=1.10689e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.6	fisher_strand_p_value=3.22058e-15	frequency=2.264e-01	ks_quality_p_value=1	major_base=G	major_cov=12/70	major_frequency=7.736e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.264e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=12/70	total_cov=36/70
RA	761	.	1	603883	0	A	G	bias_e_value=7.81269e-10	bias_p_value=3.61996e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.5	fisher_strand_p_value=8.99368e-18	frequency=2.673e-01	ks_quality_p_value=1	major_base=A	major_cov=66/8	major_frequency=7.327e-01	minor_base=G	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.673e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=66/8	total_cov=66/35
RA	762	.	1	605262	0	T	C	bias_e_value=1780280	bias_p_value=0.82488	consensus_score=289.7	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.973623	major_base=C	major_cov=41/45	major_frequency=9.885e-01	minor_base=G	minor_cov=1/0	new_cov=41/45	polymorphism_frequency=9.885e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	763	.	1	608195	0	T	C	consensus_score=399.4	frequency=1	major_base=C	major_cov=56/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/62
RA	764	.	1	610281	0	T	C	consensus_score=294.3	frequency=1	major_base=C	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	765	.	1	610385	0	T	C	consensus_score=306.1	frequency=1	major_base=C	major_cov=42/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/48
RA	766	.	1	613405	0	C	A	consensus_score=428.0	frequency=1	major_base=A	major_cov=69/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/51
RA	767	.	1	628593	0	T	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	768	.	1	628678	0	T	C	consensus_score=218.7	frequency=1	major_base=C	major_cov=30/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/31
RA	769	.	1	631527	0	T	C	consensus_score=441.7	frequency=1	major_base=C	major_cov=62/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	770	.	1	660864	0	T	C	consensus_score=295.3	frequency=1	major_base=C	major_cov=25/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/62
RA	771	.	1	661592	0	C	T	consensus_score=324.7	frequency=1	major_base=T	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	772	.	1	663949	0	T	A	bias_e_value=4.89042e-05	bias_p_value=2.26594e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.2	fisher_strand_p_value=7.84786e-13	frequency=2.692e-01	ks_quality_p_value=1	major_base=T	major_cov=8/49	major_frequency=7.308e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.692e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=8/49	total_cov=29/49
RA	773	.	1	663979	0	A	G	bias_e_value=5.58401e-08	bias_p_value=2.58731e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.3	fisher_strand_p_value=7.21396e-16	frequency=2.987e-01	ks_quality_p_value=1	major_base=A	major_cov=4/50	major_frequency=7.013e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.987e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=4/50	total_cov=30/50
RA	774	.	1	663995	0	A	T	bias_e_value=2.49464e-05	bias_p_value=1.15587e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.8	fisher_strand_p_value=3.9089e-13	frequency=2.703e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.297e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.703e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=6/48	total_cov=26/48
RA	775	.	1	666474	0	G	A	consensus_score=347.1	frequency=1	major_base=A	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	776	.	1	668636	0	T	C	consensus_score=287.8	frequency=1	major_base=C	major_cov=36/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	777	.	1	680445	0	A	T	bias_e_value=0.0012766	bias_p_value=5.91503e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.5	fisher_strand_p_value=2.32085e-11	frequency=2.137e-01	ks_quality_p_value=1	major_base=A	major_cov=65/27	major_frequency=7.863e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.137e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=65/27	total_cov=65/52
RA	778	.	1	680469	0	G	T	bias_e_value=2.01911e-06	bias_p_value=9.35543e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.0	fisher_strand_p_value=2.90824e-14	frequency=2.602e-01	ks_quality_p_value=1	major_base=G	major_cov=66/25	major_frequency=7.398e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.602e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=66/25	total_cov=66/57
RA	779	.	1	680739	0	A	G	consensus_score=293.1	frequency=1	major_base=G	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	780	.	1	683646	0	G	A	consensus_score=287.0	frequency=1	major_base=A	major_cov=55/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/28
RA	781	.	1	687605	0	G	A	consensus_score=376.1	frequency=1	major_base=A	major_cov=59/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/50
RA	782	.	1	693833	0	G	A	consensus_score=356.9	frequency=1	major_base=A	major_cov=40/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/64
RA	783	.	1	704090	0	T	C	consensus_score=373.8	frequency=1	major_base=C	major_cov=58/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/50
RA	784	.	1	704243	0	A	G	bias_e_value=2158220	bias_p_value=0.999997	consensus_score=52.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997519	major_base=G	major_cov=12/11	major_frequency=8.214e-01	minor_base=A	minor_cov=3/2	new_cov=12/11	polymorphism_frequency=8.214e-01	polymorphism_score=7.1	prediction=consensus	ref_cov=3/2	total_cov=15/13
RA	785	.	1	709956	0	G	A	consensus_score=336.1	frequency=1	major_base=A	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	786	.	1	717030	0	T	C	consensus_score=370.5	frequency=1	major_base=C	major_cov=55/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/52
RA	787	.	1	718390	0	T	C	consensus_score=268.5	frequency=1	major_base=C	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	788	.	1	720669	0	T	C	consensus_score=427.8	frequency=1	major_base=C	major_cov=61/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/59
RA	789	.	1	724765	0	T	C	consensus_score=394.0	frequency=1	major_base=C	major_cov=61/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/54
RA	790	.	1	725966	0	T	C	consensus_score=363.2	frequency=1	major_base=C	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	791	.	1	726475	0	G	A	consensus_score=376.1	frequency=1	major_base=A	major_cov=41/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/67
RA	792	.	1	733096	0	T	A	bias_e_value=0.00947878	bias_p_value=4.39193e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.3	fisher_strand_p_value=1.87721e-10	frequency=2.674e-01	ks_quality_p_value=1	major_base=T	major_cov=17/46	major_frequency=7.326e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.674e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=17/46	total_cov=40/46
RA	793	.	1	738061	0	A	G	consensus_score=365.6	frequency=1	major_base=G	major_cov=60/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/47
RA	794	.	1	749365	0	A	T	bias_e_value=4.01625e-05	bias_p_value=1.8609e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.6	fisher_strand_p_value=6.39984e-13	frequency=3.188e-01	ks_quality_p_value=1	major_base=A	major_cov=6/41	major_frequency=6.812e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=6/41	total_cov=28/41
RA	795	.	1	762130	0	G	A	consensus_score=134.8	frequency=1	major_base=A	major_cov=19/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/20
RA	796	.	1	765925	0	G	T	consensus_score=294.6	frequency=1	major_base=T	major_cov=36/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/49
RA	797	.	1	769124	0	T	C	consensus_score=217.4	frequency=1	major_base=C	major_cov=38/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/25
RA	798	.	1	769973	0	C	T	consensus_score=270.8	frequency=1	major_base=T	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	799	.	1	771326	0	G	A	consensus_score=292.7	frequency=1	major_base=A	major_cov=51/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/35
RA	800	.	1	772169	0	G	C	consensus_score=221.7	frequency=1	major_base=C	major_cov=32/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/34
RA	801	.	1	774772	0	T	C	consensus_score=257.5	frequency=1	major_base=C	major_cov=42/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/36
RA	802	.	1	775897	0	G	A	consensus_score=244.4	frequency=1	major_base=A	major_cov=41/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/29
RA	803	.	1	775927	0	A	G	consensus_score=208.1	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	804	.	1	775930	0	C	G	consensus_score=192.3	frequency=1	major_base=G	major_cov=41/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/18
RA	805	.	1	775936	0	C	T	consensus_score=217.3	frequency=1	major_base=T	major_cov=45/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/18
RA	806	.	1	775945	0	T	C	consensus_score=225.4	frequency=1	major_base=C	major_cov=45/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/21
RA	807	.	1	775975	0	T	C	consensus_score=232.9	frequency=1	major_base=C	major_cov=44/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/22
RA	808	.	1	775999	0	T	C	consensus_score=270.6	frequency=1	major_base=C	major_cov=56/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/24
RA	809	.	1	776011	0	C	T	consensus_score=281.4	frequency=1	major_base=T	major_cov=57/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/24
RA	810	.	1	776014	0	C	T	consensus_score=270.1	frequency=1	major_base=T	major_cov=57/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/24
RA	811	.	1	776026	0	A	G	consensus_score=280.3	frequency=1	major_base=G	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	812	.	1	776029	0	A	T	consensus_score=294.8	frequency=1	major_base=T	major_cov=56/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/27
RA	813	.	1	776041	0	A	G	consensus_score=310.9	frequency=1	major_base=G	major_cov=56/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/31
RA	814	.	1	776047	0	C	T	consensus_score=302.0	frequency=1	major_base=T	major_cov=57/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/31
RA	815	.	1	776051	0	T	C	consensus_score=305.0	frequency=1	major_base=C	major_cov=57/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/31
RA	816	.	1	776056	0	G	A	consensus_score=318.3	frequency=1	major_base=A	major_cov=57/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/32
RA	817	.	1	776062	0	G	A	consensus_score=296.0	frequency=1	major_base=A	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	818	.	1	776065	0	T	G	consensus_score=290.2	frequency=1	major_base=G	major_cov=53/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/35
RA	819	.	1	776075	0	C	T	consensus_score=293.9	frequency=1	major_base=T	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	820	.	1	776077	0	G	A	consensus_score=290.1	frequency=1	major_base=A	major_cov=53/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/33
RA	821	.	1	776080	0	T	G	bias_e_value=2158230	bias_p_value=1	consensus_score=299.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999726	major_base=G	major_cov=52/33	major_frequency=9.884e-01	minor_base=T	minor_cov=1/0	new_cov=52/33	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/33
RA	822	.	1	776250	0	A	G	consensus_score=214.3	frequency=1	major_base=G	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	823	.	1	776281	0	C	T	consensus_score=262.6	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	824	.	1	776284	0	G	T	consensus_score=259.1	frequency=1	major_base=T	major_cov=35/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/41
RA	825	.	1	776302	0	C	T	consensus_score=286.8	frequency=1	major_base=T	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	826	.	1	776306	0	T	C	consensus_score=253.7	frequency=1	major_base=C	major_cov=36/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	827	.	1	776317	0	T	C	consensus_score=278.4	frequency=1	major_base=C	major_cov=39/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	828	.	1	776347	0	C	T	consensus_score=298.7	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	829	.	1	776356	0	C	T	consensus_score=316.4	frequency=1	major_base=T	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	830	.	1	776359	0	T	G	consensus_score=303.0	frequency=1	major_base=G	major_cov=43/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/45
RA	831	.	1	776368	0	G	A	consensus_score=289.8	frequency=1	major_base=A	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	832	.	1	776370	0	A	G	consensus_score=283.3	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	833	.	1	776375	0	C	T	consensus_score=281.2	frequency=1	major_base=T	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	834	.	1	776376	0	T	G	consensus_score=299.8	frequency=1	major_base=G	major_cov=42/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/41
RA	835	.	1	776419	0	A	C	consensus_score=364.1	frequency=1	major_base=C	major_cov=53/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/53
RA	836	.	1	776436	0	T	A	consensus_score=348.7	frequency=1	major_base=A	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	837	.	1	776438	0	C	G	consensus_score=357.8	frequency=1	major_base=G	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	838	.	1	776439	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=347.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999806	major_base=T	major_cov=50/51	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=50/51	polymorphism_frequency=9.902e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/51
RA	839	.	1	776709	0	T	C	consensus_score=162.4	frequency=1	major_base=C	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	840	.	1	776721	0	T	G	consensus_score=124.0	frequency=1	major_base=G	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	841	.	1	776724	0	T	C	consensus_score=123.9	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	842	.	1	776727	0	C	T	consensus_score=126.5	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	843	.	1	776739	0	A	G	consensus_score=114.8	frequency=1	major_base=G	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	844	.	1	776745	0	C	T	consensus_score=48.5	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	845	.	1	776751	0	G	A	consensus_score=48.5	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	846	.	1	776752	0	T	C	consensus_score=53.3	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	847	.	1	776757	0	C	A	consensus_score=51.4	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	848	.	1	776760	0	A	G	consensus_score=47.0	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	849	.	1	776766	0	C	A	consensus_score=52.0	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	850	.	1	776769	0	A	G	consensus_score=49.5	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	851	.	1	776772	0	T	A	consensus_score=51.4	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	852	.	1	776775	0	G	T	consensus_score=48.6	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	853	.	1	776779	0	G	A	consensus_score=52.0	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	854	.	1	776781	0	A	C	consensus_score=48.6	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	855	.	1	776782	0	A	G	consensus_score=51.4	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	856	.	1	776793	0	C	T	consensus_score=48.9	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	857	.	1	776796	0	A	T	consensus_score=48.4	frequency=1	major_base=T	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	858	.	1	776799	0	G	A	consensus_score=48.5	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	859	.	1	776805	0	A	G	consensus_score=50.2	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	860	.	1	776806	0	T	C	consensus_score=53.8	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	861	.	1	776808	0	A	G	consensus_score=52.2	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	862	.	1	776810	0	A	C	consensus_score=52.3	frequency=1	major_base=C	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	863	.	1	776811	0	G	A	consensus_score=50.2	frequency=1	major_base=A	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	864	.	1	776815	0	C	G	consensus_score=52.1	frequency=1	major_base=G	major_cov=3/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/13
RA	865	.	1	776823	0	A	T	consensus_score=59.6	frequency=1	major_base=T	major_cov=4/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/15
RA	866	.	1	776826	0	T	G	consensus_score=60.3	frequency=1	major_base=G	major_cov=4/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/15
RA	867	.	1	776835	0	A	G	consensus_score=80.0	frequency=1	major_base=G	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	868	.	1	776838	0	T	C	consensus_score=79.4	frequency=1	major_base=C	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	869	.	1	776839	0	G	A	consensus_score=80.9	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	870	.	1	776853	0	T	C	consensus_score=103.1	frequency=1	major_base=C	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	871	.	1	776859	0	C	T	consensus_score=98.4	frequency=1	major_base=T	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	872	.	1	776862	0	T	C	consensus_score=97.6	frequency=1	major_base=C	major_cov=13/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/16
RA	873	.	1	776874	0	C	T	consensus_score=94.1	frequency=1	major_base=T	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	874	.	1	776877	0	T	A	consensus_score=93.0	frequency=1	major_base=A	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	875	.	1	776889	0	G	A	consensus_score=125.2	frequency=1	major_base=A	major_cov=17/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/20
RA	876	.	1	776898	0	A	G	consensus_score=128.4	frequency=1	major_base=G	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	877	.	1	776901	0	C	A	consensus_score=128.0	frequency=1	major_base=A	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	878	.	1	776916	0	A	G	consensus_score=147.1	frequency=1	major_base=G	major_cov=19/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/25
RA	879	.	1	776928	0	C	T	consensus_score=172.9	frequency=1	major_base=T	major_cov=23/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/26
RA	880	.	1	776937	0	A	G	consensus_score=171.9	frequency=1	major_base=G	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	881	.	1	776946	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	882	.	1	776947	0	T	C	consensus_score=186.8	frequency=1	major_base=C	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	883	.	1	776973	0	A	G	consensus_score=249.6	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	884	.	1	776976	0	A	G	consensus_score=249.2	frequency=1	major_base=G	major_cov=37/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	885	.	1	777006	0	A	T	consensus_score=271.5	frequency=1	major_base=T	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	886	.	1	777066	0	A	G	consensus_score=299.2	frequency=1	major_base=G	major_cov=44/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/40
RA	887	.	1	777078	0	G	A	consensus_score=275.3	frequency=1	major_base=A	major_cov=40/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/40
RA	888	.	1	777123	0	T	C	consensus_score=263.8	frequency=1	major_base=C	major_cov=39/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/38
RA	889	.	1	777131	0	C	T	consensus_score=249.4	frequency=1	major_base=T	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	890	.	1	777138	0	T	C	consensus_score=224.6	frequency=1	major_base=C	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	891	.	1	777141	0	C	T	consensus_score=222.3	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	892	.	1	777151	0	C	T	consensus_score=239.9	frequency=1	major_base=T	major_cov=39/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/29
RA	893	.	1	777156	0	T	C	consensus_score=238.5	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	894	.	1	777162	0	C	T	consensus_score=242.1	frequency=1	major_base=T	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	895	.	1	777165	0	A	C	consensus_score=235.7	frequency=1	major_base=C	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	896	.	1	777174	0	C	T	consensus_score=237.1	frequency=1	major_base=T	major_cov=40/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/30
RA	897	.	1	777180	0	G	T	consensus_score=248.2	frequency=1	major_base=T	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	898	.	1	777192	0	G	T	consensus_score=238.5	frequency=1	major_base=T	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	899	.	1	777195	0	A	G	consensus_score=234.8	frequency=1	major_base=G	major_cov=41/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/28
RA	900	.	1	777216	0	G	A	consensus_score=213.8	frequency=1	major_base=A	major_cov=37/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/27
RA	901	.	1	777222	0	C	T	consensus_score=225.3	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	902	.	1	777228	0	G	C	consensus_score=218.4	frequency=1	major_base=C	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	903	.	1	777258	0	A	G	consensus_score=242.7	frequency=1	major_base=G	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	904	.	1	777264	0	C	T	consensus_score=251.4	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	905	.	1	777297	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=270.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/34	major_frequency=9.875e-01	minor_base=C	minor_cov=1/0	new_cov=45/34	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/34
RA	906	.	1	777318	0	T	C	consensus_score=289.1	frequency=1	major_base=C	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	907	.	1	777333	0	T	C	consensus_score=306.6	frequency=1	major_base=C	major_cov=48/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/39
RA	908	.	1	777338	0	C	T	bias_e_value=2157770	bias_p_value=0.999789	consensus_score=297.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979528	major_base=T	major_cov=49/39	major_frequency=9.888e-01	minor_base=C	minor_cov=1/0	new_cov=49/39	polymorphism_frequency=9.888e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=1/0	total_cov=50/39
RA	909	.	1	777376	0	C	T	consensus_score=323.6	frequency=1	major_base=T	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	910	.	1	777522	0	T	C	consensus_score=224.7	frequency=1	major_base=C	major_cov=26/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/40
RA	911	.	1	777543	0	G	A	consensus_score=239.1	frequency=1	major_base=A	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	912	.	1	777545	0	A	C	consensus_score=235.6	frequency=1	major_base=C	major_cov=26/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/42
RA	913	.	1	777570	0	C	A	consensus_score=244.7	frequency=1	major_base=A	major_cov=31/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/40
RA	914	.	1	777588	0	G	C	bias_e_value=2158230	bias_p_value=1	consensus_score=244.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=30/42	major_frequency=9.863e-01	minor_base=G	minor_cov=0/1	new_cov=30/42	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/43
RA	915	.	1	777636	0	C	T	consensus_score=283.5	frequency=1	major_base=T	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	916	.	1	777660	0	C	T	consensus_score=291.5	frequency=1	major_base=T	major_cov=40/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/45
RA	917	.	1	777741	0	T	C	consensus_score=385.1	frequency=1	major_base=C	major_cov=50/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/62
RA	918	.	1	777756	0	G	A	consensus_score=403.0	frequency=1	major_base=A	major_cov=54/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/62
RA	919	.	1	777762	0	T	A	bias_e_value=2158230	bias_p_value=1	consensus_score=409.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=55/64	major_frequency=9.917e-01	minor_base=C	minor_cov=0/1	new_cov=55/64	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/65
RA	920	.	1	777771	0	T	C	consensus_score=432.0	frequency=1	major_base=C	major_cov=55/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/65
RA	921	.	1	777780	0	T	C	consensus_score=407.9	frequency=1	major_base=C	major_cov=54/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/64
RA	922	.	1	777820	0	G	A	consensus_score=337.4	frequency=1	major_base=A	major_cov=51/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	923	.	1	777840	0	C	A	consensus_score=363.1	frequency=1	major_base=A	major_cov=53/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	924	.	1	777843	0	A	T	bias_e_value=2117950	bias_p_value=0.981337	consensus_score=335.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.813126	major_base=T	major_cov=51/48	major_frequency=9.900e-01	minor_base=C	minor_cov=1/0	new_cov=51/48	polymorphism_frequency=9.900e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	925	.	1	777849	0	T	A	consensus_score=354.1	frequency=1	major_base=A	major_cov=51/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/52
RA	926	.	1	777873	0	C	T	consensus_score=334.2	frequency=1	major_base=T	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	927	.	1	777876	0	A	G	consensus_score=325.9	frequency=1	major_base=G	major_cov=47/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	928	.	1	777882	0	G	A	consensus_score=317.8	frequency=1	major_base=A	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	929	.	1	777885	0	G	A	bias_e_value=2158230	bias_p_value=1	consensus_score=298.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=43/44	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=43/44	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	930	.	1	777900	0	A	G	consensus_score=325.7	frequency=1	major_base=G	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	931	.	1	777907	0	C	T	consensus_score=322.3	frequency=1	major_base=T	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	932	.	1	777912	0	A	C	consensus_score=310.6	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	933	.	1	777915	0	A	C	consensus_score=305.7	frequency=1	major_base=C	major_cov=44/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/47
RA	934	.	1	777960	0	G	A	bias_e_value=1737070	bias_p_value=0.804858	consensus_score=242.1	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/40	major_frequency=9.861e-01	minor_base=G	minor_cov=1/0	new_cov=31/40	polymorphism_frequency=9.861e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=1/0	total_cov=32/40
RA	935	.	1	777972	0	G	A	consensus_score=227.8	frequency=1	major_base=A	major_cov=35/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/31
RA	936	.	1	777987	0	C	T	consensus_score=187.0	frequency=1	major_base=T	major_cov=30/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/26
RA	937	.	1	777996	0	C	T	consensus_score=181.4	frequency=1	major_base=T	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	938	.	1	777999	0	C	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	939	.	1	778002	0	T	C	consensus_score=190.1	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	940	.	1	778006	0	T	C	consensus_score=180.4	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	941	.	1	778008	0	G	C	consensus_score=186.7	frequency=1	major_base=C	major_cov=28/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/26
RA	942	.	1	778017	0	T	A	consensus_score=184.6	frequency=1	major_base=A	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	943	.	1	778020	0	C	T	consensus_score=186.1	frequency=1	major_base=T	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	944	.	1	778023	0	A	G	consensus_score=175.4	frequency=1	major_base=G	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	945	.	1	778027	0	C	T	consensus_score=188.4	frequency=1	major_base=T	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	946	.	1	778029	0	C	G	consensus_score=185.4	frequency=1	major_base=G	major_cov=27/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	947	.	1	778032	0	C	A	bias_e_value=2158180	bias_p_value=0.999979	consensus_score=177.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99349	major_base=A	major_cov=26/26	major_frequency=9.811e-01	minor_base=G	minor_cov=1/0	new_cov=26/26	polymorphism_frequency=9.811e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	948	.	1	778041	0	C	T	consensus_score=176.3	frequency=1	major_base=T	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	949	.	1	778044	0	G	A	consensus_score=175.4	frequency=1	major_base=A	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	950	.	1	778056	0	T	A	consensus_score=176.7	frequency=1	major_base=A	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	951	.	1	778061	0	C	A	consensus_score=167.4	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	952	.	1	778062	0	G	A	consensus_score=159.3	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	953	.	1	778066	0	C	T	consensus_score=162.1	frequency=1	major_base=T	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	954	.	1	778077	0	C	T	consensus_score=174.3	frequency=1	major_base=T	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	955	.	1	778089	0	T	C	consensus_score=162.4	frequency=1	major_base=C	major_cov=27/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/24
RA	956	.	1	778095	0	T	G	consensus_score=173.8	frequency=1	major_base=G	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	957	.	1	778098	0	C	A	consensus_score=165.7	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	958	.	1	778100	0	C	T	consensus_score=164.5	frequency=1	major_base=T	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	959	.	1	778107	0	T	A	consensus_score=167.4	frequency=1	major_base=A	major_cov=26/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/24
RA	960	.	1	778156	0	T	A	consensus_score=116.7	frequency=1	major_base=A	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	961	.	1	778162	0	G	C	consensus_score=117.2	frequency=1	major_base=C	major_cov=19/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/17
RA	962	.	1	778172	0	C	T	consensus_score=124.7	frequency=1	major_base=T	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	963	.	1	778179	0	C	A	bias_e_value=3014.11	bias_p_value=0.00139656	consensus_score=112.0	fisher_strand_p_value=0.000141604	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/5	major_frequency=8.462e-01	minor_base=C	minor_cov=0/6	new_cov=28/5	polymorphism_frequency=8.462e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/6	total_cov=28/11
RA	964	.	1	778213	0	A	C	consensus_score=114.3	frequency=1	major_base=C	major_cov=26/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/10
RA	965	.	1	778215	0	G	A	consensus_score=102.5	frequency=1	major_base=A	major_cov=26/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/10
RA	966	.	1	778218	0	G	A	consensus_score=110.5	frequency=1	major_base=A	major_cov=26/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/10
RA	967	.	1	778227	0	A	G	consensus_score=125.5	frequency=1	major_base=G	major_cov=26/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/12
RA	968	.	1	778233	0	C	T	consensus_score=125.8	frequency=1	major_base=T	major_cov=26/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/12
RA	969	.	1	778237	0	G	A	consensus_score=122.8	frequency=1	major_base=A	major_cov=25/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/12
RA	970	.	1	778248	0	G	A	consensus_score=134.1	frequency=1	major_base=A	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	971	.	1	778250	0	C	T	consensus_score=125.0	frequency=1	major_base=T	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	972	.	1	778254	0	T	C	consensus_score=131.7	frequency=1	major_base=C	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	973	.	1	778255	0	T	C	consensus_score=132.7	frequency=1	major_base=C	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	974	.	1	778323	0	C	T	consensus_score=196.6	frequency=1	major_base=T	major_cov=34/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	975	.	1	778354	0	T	C	consensus_score=207.5	frequency=1	major_base=C	major_cov=35/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/24
RA	976	.	1	778358	0	A	G	consensus_score=205.8	frequency=1	major_base=G	major_cov=35/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/24
RA	977	.	1	778364	0	A	G	consensus_score=222.7	frequency=1	major_base=G	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	978	.	1	778410	0	T	G	consensus_score=225.2	frequency=1	major_base=G	major_cov=35/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/32
RA	979	.	1	778446	0	A	G	consensus_score=231.1	frequency=1	major_base=G	major_cov=40/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/29
RA	980	.	1	779310	0	G	A	consensus_score=282.3	frequency=1	major_base=A	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	981	.	1	779318	0	T	C	consensus_score=282.2	frequency=1	major_base=C	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	982	.	1	779320	0	C	T	consensus_score=274.1	frequency=1	major_base=T	major_cov=35/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/45
RA	983	.	1	789340	0	G	A	bias_e_value=0.142756	bias_p_value=6.61451e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.5	fisher_strand_p_value=3.21803e-09	frequency=4.375e-01	ks_quality_p_value=1	major_base=G	major_cov=5/22	major_frequency=5.625e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=4.375e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=5/22	total_cov=26/22
RA	984	.	1	794766	0	G	T	bias_e_value=0.183367	bias_p_value=8.49619e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.0	fisher_strand_p_value=4.32129e-09	frequency=2.090e-01	ks_quality_p_value=0.968952	major_base=G	major_cov=48/5	major_frequency=7.910e-01	minor_base=T	minor_cov=1/13	new_cov=1/13	polymorphism_frequency=2.090e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=48/5	total_cov=49/19
RA	985	.	1	794870	0	G	A	consensus_score=251.1	frequency=1	major_base=A	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	986	.	1	795420	0	C	T	bias_e_value=0.00834753	bias_p_value=3.86777e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.7	fisher_strand_p_value=1.64384e-10	frequency=3.043e-01	ks_quality_p_value=1	major_base=C	major_cov=10/38	major_frequency=6.957e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.043e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=10/38	total_cov=31/38
RA	987	.	1	804458	0	T	C	consensus_score=366.9	frequency=1	major_base=C	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	988	.	1	805477	0	T	C	consensus_score=214.3	frequency=1	major_base=C	major_cov=27/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/34
RA	989	.	1	806569	1	.	G	consensus_score=247.2	frequency=1	major_base=G	major_cov=39/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/34
RA	990	.	1	815235	0	T	C	consensus_score=273.9	frequency=1	major_base=C	major_cov=40/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/41
RA	991	.	1	821978	0	A	C	bias_e_value=0.00141748	bias_p_value=6.56779e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.2	fisher_strand_p_value=2.58803e-11	frequency=3.425e-01	ks_quality_p_value=1	major_base=A	major_cov=37/11	major_frequency=6.575e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.425e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=37/11	total_cov=37/36
RA	992	.	1	831643	0	A	G	consensus_score=301.8	frequency=1	major_base=G	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	993	.	1	833193	0	T	C	consensus_score=314.4	frequency=1	major_base=C	major_cov=43/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/50
RA	994	.	1	833551	1	.	A	bias_e_value=2157960	bias_p_value=0.999876	consensus_score=394.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.984321	major_base=A	major_cov=60/52	major_frequency=9.912e-01	minor_base=.	minor_cov=1/0	new_cov=60/52	polymorphism_frequency=9.912e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=61/52
RA	995	.	1	843148	0	T	C	consensus_score=261.0	frequency=1	major_base=C	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	996	.	1	846243	0	T	C	consensus_score=304.6	frequency=1	major_base=C	major_cov=34/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	997	.	1	850608	0	T	G	bias_e_value=0.00529421	bias_p_value=2.45303e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.0	fisher_strand_p_value=1.02192e-10	frequency=3.452e-01	ks_quality_p_value=1	major_base=T	major_cov=17/38	major_frequency=6.548e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.452e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=17/38	total_cov=51/38
RA	998	.	1	851190	0	A	G	consensus_score=143.3	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	999	.	1	855490	0	T	A	consensus_score=109.5	frequency=1	major_base=A	major_cov=13/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/20
RA	1000	.	1	863135	0	T	.	consensus_score=107.2	frequency=1	major_base=.	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	1001	.	1	866382	0	C	T	bias_e_value=1789080	bias_p_value=0.828956	consensus_score=287.9	fisher_strand_p_value=0.47561	frequency=1	ks_quality_p_value=0.999699	major_base=T	major_cov=38/43	major_frequency=9.878e-01	minor_base=C	minor_cov=1/0	new_cov=38/43	polymorphism_frequency=9.878e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=1/0	total_cov=39/43
RA	1002	.	1	867187	0	C	T	consensus_score=255.7	frequency=1	major_base=T	major_cov=27/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/45
RA	1003	.	1	870359	0	C	T	consensus_score=253.8	frequency=1	major_base=T	major_cov=28/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/46
RA	1004	.	1	874360	0	A	G	consensus_score=276.4	frequency=1	major_base=G	major_cov=38/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/43
RA	1005	.	1	874829	0	G	A	consensus_score=436.6	frequency=1	major_base=A	major_cov=66/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/60
RA	1006	.	1	874954	0	A	G	bias_e_value=1728630	bias_p_value=0.800948	consensus_score=399.7	fisher_strand_p_value=0.439655	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=65/50	major_frequency=9.914e-01	minor_base=T	minor_cov=0/1	new_cov=65/50	polymorphism_frequency=9.914e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/51
RA	1007	.	1	885706	0	G	A	consensus_score=342.8	frequency=1	major_base=A	major_cov=47/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/52
RA	1008	.	1	886421	0	C	T	consensus_score=365.3	frequency=1	major_base=T	major_cov=60/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/45
RA	1009	.	1	886900	0	A	C	consensus_score=328.3	frequency=1	major_base=C	major_cov=50/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/45
RA	1010	.	1	892600	0	G	A	bias_e_value=0.000282553	bias_p_value=1.30919e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.2	fisher_strand_p_value=4.83912e-12	frequency=2.439e-01	ks_quality_p_value=1	major_base=G	major_cov=10/52	major_frequency=7.561e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.439e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=10/52	total_cov=30/52
RA	1011	.	1	892614	0	A	T	bias_e_value=0.0239929	bias_p_value=1.11169e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.0	fisher_strand_p_value=4.9574e-10	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=14/52	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=14/52	total_cov=32/52
RA	1012	.	1	896161	0	A	G	consensus_score=309.0	frequency=1	major_base=G	major_cov=49/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/43
RA	1013	.	1	896244	0	A	G	consensus_score=288.3	frequency=1	major_base=G	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	1014	.	1	911453	0	A	G	bias_e_value=0.0141805	bias_p_value=6.57045e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.3	fisher_strand_p_value=2.85981e-10	frequency=2.836e-01	ks_quality_p_value=1	major_base=A	major_cov=9/39	major_frequency=7.164e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=9/39	total_cov=28/39
RA	1015	.	1	911482	0	T	G	bias_e_value=0.00279426	bias_p_value=1.2947e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=5.24795e-11	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/37	major_frequency=6.667e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=11/37	total_cov=35/37
RA	1016	.	1	911867	0	A	G	consensus_score=378.1	frequency=1	major_base=G	major_cov=49/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/60
RA	1017	.	1	920917	0	A	G	consensus_score=287.7	frequency=1	major_base=G	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	1018	.	1	936852	0	G	A	consensus_score=257.9	frequency=1	major_base=A	major_cov=32/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/44
RA	1019	.	1	937665	0	G	A	consensus_score=295.8	frequency=1	major_base=A	major_cov=45/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/38
RA	1020	.	1	944486	0	G	A	consensus_score=400.5	frequency=1	major_base=A	major_cov=63/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/54
RA	1021	.	1	947244	0	T	C	consensus_score=320.6	frequency=1	major_base=C	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	1022	.	1	959296	0	T	C	consensus_score=268.0	frequency=1	major_base=C	major_cov=42/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/37
RA	1023	.	1	959722	0	C	T	bias_e_value=4.09845e-08	bias_p_value=1.89899e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.2	fisher_strand_p_value=5.44443e-16	frequency=3.827e-01	ks_quality_p_value=0.963963	major_base=C	major_cov=43/7	major_frequency=6.173e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.827e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=43/7	total_cov=43/38
RA	1024	.	1	960211	1	.	C	bias_e_value=2124090	bias_p_value=0.984183	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=1	frequency=4.400e-01	ks_quality_p_value=0.827496	major_base=.	major_cov=13/15	major_frequency=5.600e-01	minor_base=C	minor_cov=10/12	new_cov=10/12	polymorphism_frequency=4.400e-01	polymorphism_score=102.9	prediction=polymorphism	ref_cov=13/15	total_cov=23/27
RA	1025	.	1	960219	1	.	C	bias_e_value=2099990	bias_p_value=0.973017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.5	fisher_strand_p_value=0.776876	frequency=5.200e-01	ks_quality_p_value=1	major_base=C	major_cov=11/15	major_frequency=5.200e-01	minor_base=.	minor_cov=12/12	new_cov=11/15	polymorphism_frequency=5.200e-01	polymorphism_score=93.1	prediction=polymorphism	ref_cov=12/12	total_cov=23/27
RA	1026	.	1	968437	0	C	T	bias_e_value=1779240	bias_p_value=0.824398	consensus_score=349.1	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	1027	.	1	971582	0	C	T	consensus_score=221.4	frequency=1	major_base=T	major_cov=44/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/22
RA	1028	.	1	997437	0	G	A	consensus_score=233.4	frequency=1	major_base=A	major_cov=46/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/25
RA	1029	.	1	1000298	0	G	A	consensus_score=214.6	frequency=1	major_base=A	major_cov=37/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/26
RA	1030	.	1	1000361	0	C	T	consensus_score=204.7	frequency=1	major_base=T	major_cov=32/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/28
RA	1031	.	1	1003145	1	.	T	consensus_score=145.1	frequency=1	major_base=T	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1032	.	1	1003145	2	.	C	consensus_score=149.9	frequency=1	major_base=C	major_cov=27/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/16
RA	1033	.	1	1012229	0	T	C	consensus_score=157.7	frequency=1	major_base=C	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	1034	.	1	1016448	0	T	C	consensus_score=175.7	frequency=1	major_base=C	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	1035	.	1	1016719	0	C	G	bias_e_value=388.485	bias_p_value=0.000180002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.6	fisher_strand_p_value=1.6121e-05	frequency=3.871e-01	ks_quality_p_value=0.921477	major_base=C	major_cov=15/4	major_frequency=6.129e-01	minor_base=G	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=3.871e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=15/4	total_cov=15/17
RA	1036	.	1	1024742	0	C	T	consensus_score=155.8	frequency=1	major_base=T	major_cov=30/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/17
RA	1037	.	1	1030472	0	A	G	consensus_score=159.3	frequency=1	major_base=G	major_cov=20/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/27
RA	1038	.	1	1030642	0	C	A	consensus_score=161.3	frequency=1	major_base=A	major_cov=23/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	1039	.	1	1031163	0	G	A	consensus_score=164.9	frequency=1	major_base=A	major_cov=25/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	1040	.	1	1038394	0	C	A	consensus_score=174.2	frequency=1	major_base=A	major_cov=24/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/27
RA	1041	.	1	1038563	0	C	T	consensus_score=136.5	frequency=1	major_base=T	major_cov=21/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/20
RA	1042	.	1	1039263	0	T	C	consensus_score=149.5	frequency=1	major_base=C	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	1043	.	1	1056058	0	G	A	consensus_score=342.8	frequency=1	major_base=A	major_cov=44/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/55
RA	1044	.	1	1061592	0	G	A	consensus_score=340.9	frequency=1	major_base=A	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	1045	.	1	1061970	0	A	G	consensus_score=149.6	frequency=1	major_base=G	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	1046	.	1	1069159	0	T	C	consensus_score=202.9	frequency=1	major_base=C	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1047	.	1	1071456	0	T	C	consensus_score=59.2	frequency=1	major_base=C	major_cov=12/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/6
RA	1048	.	1	1072176	0	A	C	bias_e_value=2.21923e-08	bias_p_value=1.02827e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.2	fisher_strand_p_value=2.79313e-16	frequency=4.267e-01	ks_quality_p_value=1	major_base=A	major_cov=38/5	major_frequency=5.733e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=38/5	total_cov=38/37
RA	1049	.	1	1078881	0	T	C	consensus_score=370.3	frequency=1	major_base=C	major_cov=49/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/55
RA	1050	.	1	1080800	0	T	C	consensus_score=346.1	frequency=1	major_base=C	major_cov=44/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/53
RA	1051	.	1	1099712	0	G	A	consensus_score=242.8	frequency=1	major_base=A	major_cov=34/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/37
RA	1052	.	1	1100008	0	C	T	consensus_score=253.1	frequency=1	major_base=T	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	1053	.	1	1114831	0	T	C	consensus_score=199.0	frequency=1	major_base=C	major_cov=26/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/33
RA	1054	.	1	1115287	0	G	A	bias_e_value=965.223	bias_p_value=0.00044723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.5	fisher_strand_p_value=4.02138e-05	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=7.164e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.836e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=24/24	total_cov=24/44
RA	1055	.	1	1115710	0	T	C	consensus_score=235.1	frequency=1	major_base=C	major_cov=30/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/41
RA	1056	.	1	1119350	0	A	G	consensus_score=137.0	frequency=1	major_base=G	major_cov=16/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/25
RA	1057	.	1	1121864	0	T	C	consensus_score=276.8	frequency=1	major_base=C	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	1058	.	1	1133958	0	T	C	consensus_score=261.7	frequency=1	major_base=C	major_cov=32/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/43
RA	1059	.	1	1134460	0	C	T	bias_e_value=860651	bias_p_value=0.398777	consensus_score=206.8	fisher_strand_p_value=0.131745	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/31	major_frequency=9.452e-01	minor_base=G	minor_cov=4/0	new_cov=38/31	polymorphism_frequency=9.452e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	1060	.	1	1147573	0	C	T	consensus_score=325.9	frequency=1	major_base=T	major_cov=42/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/53
RA	1061	.	1	1152140	0	G	A	consensus_score=292.1	frequency=1	major_base=A	major_cov=50/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/35
RA	1062	.	1	1152507	0	C	T	consensus_score=310.7	frequency=1	major_base=T	major_cov=43/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/44
RA	1063	.	1	1153316	0	G	A	bias_e_value=859883	bias_p_value=0.398421	consensus_score=274.1	fisher_strand_p_value=0.131835	frequency=1	ks_quality_p_value=0.997982	major_base=A	major_cov=31/57	major_frequency=9.778e-01	minor_base=T	minor_cov=2/0	new_cov=31/57	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/57
RA	1064	.	1	1155872	0	A	T	consensus_score=375.0	frequency=1	major_base=T	major_cov=56/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/51
RA	1065	.	1	1159346	0	A	C	bias_e_value=0.0314847	bias_p_value=1.45882e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.9	fisher_strand_p_value=6.58893e-10	frequency=2.568e-01	ks_quality_p_value=1	major_base=A	major_cov=43/12	major_frequency=7.432e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=43/12	total_cov=43/32
RA	1066	.	1	1160245	0	G	A	bias_e_value=0.00222337	bias_p_value=1.03019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=4.13584e-11	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=6/37	major_frequency=6.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.065e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=6/37	total_cov=26/37
RA	1067	.	1	1165044	0	G	T	consensus_score=277.1	frequency=1	major_base=T	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	1068	.	1	1165798	0	T	C	consensus_score=176.0	frequency=1	major_base=C	major_cov=20/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/33
RA	1069	.	1	1179339	0	T	C	consensus_score=243.6	frequency=1	major_base=C	major_cov=26/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/46
RA	1070	.	1	1181106	0	T	C	consensus_score=280.2	frequency=1	major_base=C	major_cov=37/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/46
RA	1071	.	1	1190794	0	C	T	consensus_score=350.3	frequency=1	major_base=T	major_cov=47/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/51
RA	1072	.	1	1197746	0	A	G	consensus_score=304.2	frequency=1	major_base=G	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	1073	.	1	1200621	0	T	C	consensus_score=254.0	frequency=1	major_base=C	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	1074	.	1	1203433	0	T	C	consensus_score=306.2	frequency=1	major_base=C	major_cov=46/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/44
RA	1075	.	1	1209184	0	G	A	consensus_score=311.0	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	1076	.	1	1215848	0	G	A	consensus_score=290.4	frequency=1	major_base=A	major_cov=35/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/47
RA	1077	.	1	1216310	0	C	T	consensus_score=288.0	frequency=1	major_base=T	major_cov=31/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	1078	.	1	1217363	0	G	A	bias_e_value=1779080	bias_p_value=0.824323	consensus_score=337.2	fisher_strand_p_value=0.469388	frequency=1	ks_quality_p_value=0.99979	major_base=A	major_cov=52/45	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=52/45	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=52/46
RA	1079	.	1	1218105	0	C	T	consensus_score=282.5	frequency=1	major_base=T	major_cov=51/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/30
RA	1080	.	1	1223066	0	T	C	consensus_score=235.5	frequency=1	major_base=C	major_cov=44/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/26
RA	1081	.	1	1240351	0	C	T	bias_e_value=0.00170507	bias_p_value=7.90033e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.5	fisher_strand_p_value=3.13689e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=13/42	major_frequency=6.962e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=13/42	total_cov=37/42
RA	1082	.	1	1240376	0	C	T	bias_e_value=6.78889e-08	bias_p_value=3.14558e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.9	fisher_strand_p_value=8.81997e-16	frequency=3.875e-01	ks_quality_p_value=1	major_base=C	major_cov=7/42	major_frequency=6.125e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.875e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=7/42	total_cov=39/42
RA	1083	.	1	1240408	0	G	T	bias_e_value=1.19861	bias_p_value=5.55365e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.6	fisher_strand_p_value=3.03294e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=16/40	major_frequency=7.568e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=16/40	total_cov=34/40
RA	1084	.	1	1243840	0	T	C	consensus_score=127.8	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	1085	.	1	1243924	0	A	.	consensus_score=189.6	frequency=1	major_base=.	major_cov=22/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/21
RA	1086	.	1	1244043	0	T	C	consensus_score=158.1	frequency=1	major_base=C	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	1087	.	1	1253909	0	C	A	consensus_score=320.0	frequency=1	major_base=A	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	1088	.	1	1273160	0	G	T	consensus_score=338.4	frequency=1	major_base=T	major_cov=47/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/47
RA	1089	.	1	1273719	0	C	T	consensus_score=342.7	frequency=1	major_base=T	major_cov=53/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/46
RA	1090	.	1	1278291	0	A	G	consensus_score=296.9	frequency=1	major_base=G	major_cov=48/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/36
RA	1091	.	1	1288020	0	A	G	consensus_score=249.3	frequency=1	major_base=G	major_cov=28/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/45
RA	1092	.	1	1291246	0	G	A	bias_e_value=1796150	bias_p_value=0.832234	consensus_score=336.4	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=0.999798	major_base=A	major_cov=52/47	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=52/47	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/48
RA	1093	.	1	1292132	0	T	C	consensus_score=346.4	frequency=1	major_base=C	major_cov=42/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/59
RA	1094	.	1	1298171	0	T	C	consensus_score=296.9	frequency=1	major_base=C	major_cov=57/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/29
RA	1095	.	1	1301106	0	T	C	consensus_score=308.1	frequency=1	major_base=C	major_cov=43/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	1096	.	1	1302254	0	G	T	consensus_score=301.4	frequency=1	major_base=T	major_cov=48/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/38
RA	1097	.	1	1303323	0	T	C	consensus_score=276.5	frequency=1	major_base=C	major_cov=46/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/36
RA	1098	.	1	1317436	0	T	C	consensus_score=190.6	frequency=1	major_base=C	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	1099	.	1	1321684	0	T	C	consensus_score=81.0	frequency=1	major_base=C	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	1100	.	1	1326214	0	A	C	consensus_score=163.1	frequency=1	major_base=C	major_cov=16/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/30
RA	1101	.	1	1326536	0	T	C	consensus_score=252.5	frequency=1	major_base=C	major_cov=32/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/38
RA	1102	.	1	1326830	0	T	C	consensus_score=258.1	frequency=1	major_base=C	major_cov=45/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/30
RA	1103	.	1	1329621	0	G	T	consensus_score=218.9	frequency=1	major_base=T	major_cov=36/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/28
RA	1104	.	1	1340494	0	T	C	consensus_score=284.0	frequency=1	major_base=C	major_cov=37/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/43
RA	1105	.	1	1342854	0	G	A	consensus_score=161.6	frequency=1	major_base=A	major_cov=27/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/21
RA	1106	.	1	1344493	0	T	G	bias_e_value=5.60479e-05	bias_p_value=2.59694e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.9	fisher_strand_p_value=9.03845e-13	frequency=4.154e-01	ks_quality_p_value=1	major_base=T	major_cov=6/32	major_frequency=5.846e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=4.154e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=6/32	total_cov=33/32
RA	1107	.	1	1345901	0	G	T	consensus_score=119.9	frequency=1	major_base=T	major_cov=21/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/15
RA	1108	.	1	1349368	0	A	G	consensus_score=258.8	frequency=1	major_base=G	major_cov=35/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/40
RA	1109	.	1	1355151	0	C	T	bias_e_value=0.00150593	bias_p_value=6.97762e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.8	fisher_strand_p_value=2.75637e-11	frequency=2.545e-01	ks_quality_p_value=1	major_base=C	major_cov=2/39	major_frequency=7.455e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.545e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=2/39	total_cov=17/39
RA	1110	.	1	1356260	0	T	C	consensus_score=302.6	frequency=1	major_base=C	major_cov=47/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/40
RA	1111	.	1	1357282	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=265.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999675	major_base=T	major_cov=30/48	major_frequency=9.873e-01	minor_base=C	minor_cov=0/1	new_cov=30/48	polymorphism_frequency=9.873e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=0/1	total_cov=30/49
RA	1112	.	1	1362878	0	G	A	bias_e_value=2158230	bias_p_value=1	consensus_score=301.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=42/43	major_frequency=9.884e-01	minor_base=G	minor_cov=0/1	new_cov=42/43	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=42/44
RA	1113	.	1	1367733	0	T	G	consensus_score=294.8	frequency=1	major_base=G	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1114	.	1	1367736	0	G	A	consensus_score=300.6	frequency=1	major_base=A	major_cov=37/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	1115	.	1	1376384	0	C	T	bias_e_value=1.04524e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.1	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=51/7	major_frequency=7.342e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=51/7	total_cov=51/28
RA	1116	.	1	1391792	0	C	A	consensus_score=265.9	frequency=1	major_base=A	major_cov=41/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/36
RA	1117	.	1	1395387	1	.	C	bias_e_value=577245	bias_p_value=0.267463	consensus_score=116.5	fisher_strand_p_value=0.106029	frequency=1	ks_quality_p_value=0.700784	major_base=C	major_cov=16/20	major_frequency=9.000e-01	minor_base=.	minor_cov=4/0	new_cov=16/20	polymorphism_frequency=9.000e-01	polymorphism_score=7.7	prediction=consensus	ref_cov=4/0	total_cov=20/20
RA	1118	.	1	1395387	2	.	C	bias_e_value=1478490	bias_p_value=0.685049	consensus_score=111.7	fisher_strand_p_value=0.341649	frequency=1	ks_quality_p_value=0.937737	major_base=C	major_cov=16/19	major_frequency=8.750e-01	minor_base=.	minor_cov=4/1	new_cov=16/19	polymorphism_frequency=8.750e-01	polymorphism_score=11.8	prediction=consensus	ref_cov=4/1	total_cov=20/20
RA	1119	.	1	1400308	0	A	G	consensus_score=254.2	frequency=1	major_base=G	major_cov=40/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	1120	.	1	1402555	0	A	C	consensus_score=76.7	frequency=1	major_base=C	major_cov=14/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	1121	.	1	1404524	0	T	C	consensus_score=220.9	frequency=1	major_base=C	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	1122	.	1	1416643	1	.	T	consensus_score=118.4	frequency=1	major_base=T	major_cov=20/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/16
RA	1123	.	1	1418807	0	T	C	consensus_score=274.0	frequency=1	major_base=C	major_cov=34/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/46
RA	1124	.	1	1419107	0	A	G	consensus_score=272.0	frequency=1	major_base=G	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	1125	.	1	1422176	0	A	G	consensus_score=148.0	frequency=1	major_base=G	major_cov=19/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/26
RA	1126	.	1	1451146	0	G	T	bias_e_value=4106.22	bias_p_value=0.00190259	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.2	fisher_strand_p_value=0.0001999	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=15/5	major_frequency=6.667e-01	minor_base=T	minor_cov=0/10	new_cov=0/10	polymorphism_frequency=3.333e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=15/5	total_cov=15/15
RA	1127	.	1	1451214	0	C	A	bias_e_value=0.173531	bias_p_value=8.04043e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.5	fisher_strand_p_value=3.95122e-09	frequency=3.889e-01	ks_quality_p_value=1	major_base=C	major_cov=21/1	major_frequency=6.111e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.889e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=21/1	total_cov=21/15
RA	1128	.	1	1456611	0	G	T	consensus_score=249.3	frequency=1	major_base=T	major_cov=40/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/31
RA	1129	.	1	1457237	0	G	A	consensus_score=247.1	frequency=1	major_base=A	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1130	.	1	1461229	0	T	C	consensus_score=191.9	frequency=1	major_base=C	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	1131	.	1	1462217	0	T	C	consensus_score=227.1	frequency=1	major_base=C	major_cov=41/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/23
RA	1132	.	1	1464084	0	T	G	consensus_score=225.0	frequency=1	major_base=G	major_cov=40/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/27
RA	1133	.	1	1467233	0	C	T	consensus_score=204.2	frequency=1	major_base=T	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1134	.	1	1476331	0	A	C	bias_e_value=1.93464e-07	bias_p_value=8.96401e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=1.16216e-08	frequency=5.741e-01	ks_quality_p_value=2.23013e-07	major_base=C	major_cov=0/31	major_frequency=5.741e-01	minor_base=A	minor_cov=16/7	new_cov=0/31	polymorphism_frequency=5.741e-01	polymorphism_score=67.2	prediction=polymorphism	ref_cov=16/7	total_cov=16/38
RA	1135	.	1	1476352	0	G	A	bias_e_value=2752.86	bias_p_value=0.00127552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.9	fisher_strand_p_value=0.000128022	frequency=3.148e-01	ks_quality_p_value=1	major_base=G	major_cov=19/18	major_frequency=6.852e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.148e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=19/18	total_cov=19/35
RA	1136	.	1	1478301	0	C	T	bias_e_value=1800660	bias_p_value=0.834322	consensus_score=91.5	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/13	major_frequency=9.655e-01	minor_base=G	minor_cov=0/1	new_cov=15/13	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	1137	.	1	1481387	0	A	C	consensus_score=200.7	frequency=1	major_base=C	major_cov=30/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/29
RA	1138	.	1	1481396	0	A	T	bias_e_value=1378600	bias_p_value=0.638765	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.9	fisher_strand_p_value=0.281839	frequency=6.780e-01	ks_quality_p_value=1	major_base=T	major_cov=19/21	major_frequency=6.780e-01	minor_base=A	minor_cov=12/7	new_cov=19/21	polymorphism_frequency=6.780e-01	polymorphism_score=59.7	prediction=polymorphism	ref_cov=12/7	total_cov=31/28
RA	1139	.	1	1481400	0	T	C	bias_e_value=2092610	bias_p_value=0.969594	consensus_reject=FREQUENCY_CUTOFF	consensus_score=86.7	fisher_strand_p_value=0.763758	frequency=7.222e-01	ks_quality_p_value=1	major_base=C	major_cov=18/21	major_frequency=7.222e-01	minor_base=T	minor_cov=8/7	new_cov=18/21	polymorphism_frequency=7.222e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=8/7	total_cov=26/28
RA	1140	.	1	1481402	0	G	T	bias_e_value=2092610	bias_p_value=0.969594	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=0.763758	frequency=7.222e-01	ks_quality_p_value=1	major_base=T	major_cov=18/21	major_frequency=7.222e-01	minor_base=G	minor_cov=8/7	new_cov=18/21	polymorphism_frequency=7.222e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=8/7	total_cov=26/28
RA	1141	.	1	1481408	0	A	T	bias_e_value=2103390	bias_p_value=0.974593	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.6	fisher_strand_p_value=1	frequency=7.647e-01	ks_quality_p_value=0.783218	major_base=T	major_cov=18/21	major_frequency=7.647e-01	minor_base=A	minor_cov=6/6	new_cov=18/21	polymorphism_frequency=7.647e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=6/6	total_cov=24/27
RA	1142	.	1	1481414	0	C	T	bias_e_value=2158160	bias_p_value=0.999968	consensus_score=119.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991962	major_base=T	major_cov=24/23	major_frequency=8.103e-01	minor_base=C	minor_cov=5/6	new_cov=24/23	polymorphism_frequency=8.103e-01	polymorphism_score=21.7	prediction=consensus	ref_cov=5/6	total_cov=29/29
RA	1143	.	1	1481420	0	C	T	bias_e_value=2042590	bias_p_value=0.946422	consensus_score=125.4	fisher_strand_p_value=0.708371	frequency=1	ks_quality_p_value=0.975546	major_base=T	major_cov=24/23	major_frequency=8.545e-01	minor_base=C	minor_cov=5/3	new_cov=24/23	polymorphism_frequency=8.545e-01	polymorphism_score=14.6	prediction=consensus	ref_cov=5/3	total_cov=29/26
RA	1144	.	1	1481423	0	G	A	bias_e_value=1788440	bias_p_value=0.82866	consensus_score=124.5	fisher_strand_p_value=0.475068	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/23	major_frequency=8.364e-01	minor_base=G	minor_cov=6/3	new_cov=23/23	polymorphism_frequency=8.364e-01	polymorphism_score=16.3	prediction=consensus	ref_cov=6/3	total_cov=29/26
RA	1145	.	1	1481429	0	T	G	bias_e_value=806318	bias_p_value=0.373602	consensus_score=165.2	fisher_strand_p_value=0.708936	frequency=1	ks_quality_p_value=0.168716	major_base=G	major_cov=25/24	major_frequency=8.596e-01	minor_base=T	minor_cov=5/3	new_cov=25/24	polymorphism_frequency=8.596e-01	polymorphism_score=15.5	prediction=consensus	ref_cov=5/3	total_cov=30/27
RA	1146	.	1	1481435	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=145.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/24	major_frequency=8.909e-01	minor_base=C	minor_cov=3/3	new_cov=25/24	polymorphism_frequency=8.909e-01	polymorphism_score=5.8	prediction=consensus	ref_cov=3/3	total_cov=28/27
RA	1147	.	1	1481540	1	.	T	consensus_score=183.4	frequency=1	major_base=T	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1148	.	1	1481545	0	C	G	consensus_score=180.9	frequency=1	major_base=G	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1149	.	1	1481546	0	C	A	consensus_score=189.3	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1150	.	1	1481549	0	T	A	consensus_score=180.0	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1151	.	1	1481550	0	T	A	consensus_score=176.6	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1152	.	1	1481552	1	.	T	bias_e_value=1246450	bias_p_value=0.577535	consensus_score=176.3	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.510912	major_base=T	major_cov=24/29	major_frequency=9.815e-01	minor_base=.	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=1/0	total_cov=25/29
RA	1153	.	1	1481553	0	G	C	bias_e_value=1273930	bias_p_value=0.590268	consensus_score=155.9	fisher_strand_p_value=0.471698	frequency=1	ks_quality_p_value=0.520419	major_base=C	major_cov=24/28	major_frequency=9.811e-01	minor_base=T	minor_cov=1/0	new_cov=24/28	polymorphism_frequency=9.811e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1154	.	1	1481554	0	G	A	bias_e_value=1628410	bias_p_value=0.754511	consensus_score=180.5	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=0.836193	major_base=A	major_cov=24/29	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=24/29	polymorphism_frequency=9.815e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	1155	.	1	1481561	0	C	T	consensus_score=187.6	frequency=1	major_base=T	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	1156	.	1	1481588	0	T	C	consensus_score=187.8	frequency=1	major_base=C	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	1157	.	1	1481589	0	A	C	consensus_score=189.3	frequency=1	major_base=C	major_cov=24/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/31
RA	1158	.	1	1481620	0	G	T	consensus_score=161.9	frequency=1	major_base=T	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	1159	.	1	1481628	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=119.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/22	major_frequency=9.737e-01	minor_base=C	minor_cov=0/1	new_cov=15/22	polymorphism_frequency=9.737e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=15/23
RA	1160	.	1	1481629	0	T	A	bias_e_value=1840750	bias_p_value=0.852898	consensus_score=114.3	fisher_strand_p_value=0.509246	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=15/21	major_frequency=9.474e-01	minor_base=C	minor_cov=0/2	new_cov=15/21	polymorphism_frequency=9.474e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	1161	.	1	1481630	0	G	C	consensus_score=124.2	frequency=1	major_base=C	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	1162	.	1	1481631	0	A	C	bias_e_value=1805680	bias_p_value=0.83665	consensus_score=108.8	fisher_strand_p_value=0.509246	frequency=1	ks_quality_p_value=0.954294	major_base=C	major_cov=15/21	major_frequency=9.474e-01	minor_base=A	minor_cov=0/2	new_cov=15/21	polymorphism_frequency=9.474e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/2	total_cov=15/23
RA	1163	.	1	1481633	0	G	A	consensus_score=127.3	frequency=1	major_base=A	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	1164	.	1	1481635	0	T	A	consensus_score=126.2	frequency=1	major_base=A	major_cov=15/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/23
RA	1165	.	1	1481801	0	T	C	consensus_score=93.0	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1166	.	1	1481805	0	A	C	consensus_score=91.3	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1167	.	1	1481815	0	T	C	consensus_score=93.1	frequency=1	major_base=C	major_cov=13/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/14
RA	1168	.	1	1481849	0	C	T	consensus_score=71.0	frequency=1	major_base=T	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	1169	.	1	1481855	0	A	T	consensus_score=67.0	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1170	.	1	1481856	0	T	C	consensus_score=64.2	frequency=1	major_base=C	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1171	.	1	1481862	0	T	C	consensus_score=59.0	frequency=1	major_base=C	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1172	.	1	1481866	0	C	T	consensus_score=63.8	frequency=1	major_base=T	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1173	.	1	1481870	0	T	A	consensus_score=63.3	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1174	.	1	1481873	0	T	G	consensus_score=64.6	frequency=1	major_base=G	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1175	.	1	1481874	0	T	A	consensus_score=66.2	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1176	.	1	1481875	0	T	A	consensus_score=66.0	frequency=1	major_base=A	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	1177	.	1	1481884	0	T	A	consensus_score=87.4	frequency=1	major_base=A	major_cov=12/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	1178	.	1	1486242	0	A	G	consensus_score=186.0	frequency=1	major_base=G	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	1179	.	1	1487250	0	C	T	consensus_score=246.0	frequency=1	major_base=T	major_cov=36/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/36
RA	1180	.	1	1487369	0	T	A	bias_e_value=0.0438154	bias_p_value=2.03016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.7	fisher_strand_p_value=9.31511e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/34	major_frequency=6.667e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.333e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=12/34	total_cov=35/34
RA	1181	.	1	1489617	0	C	A	bias_e_value=1228370	bias_p_value=0.569155	consensus_score=134.9	fisher_strand_p_value=0.230769	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=30/8	major_frequency=9.744e-01	minor_base=C	minor_cov=0/1	new_cov=30/8	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=30/9
RA	1182	.	1	1491477	0	T	C	consensus_score=213.7	frequency=1	major_base=C	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	1183	.	1	1498379	0	A	G	consensus_score=269.0	frequency=1	major_base=G	major_cov=35/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/43
RA	1184	.	1	1500438	0	C	G	consensus_score=287.9	frequency=1	major_base=G	major_cov=38/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/47
RA	1185	.	1	1500876	0	T	C	consensus_score=275.5	frequency=1	major_base=C	major_cov=31/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/47
RA	1186	.	1	1505042	0	A	G	consensus_score=344.1	frequency=1	major_base=G	major_cov=49/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/54
RA	1187	.	1	1518265	0	A	C	consensus_score=307.0	frequency=1	major_base=C	major_cov=47/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/41
RA	1188	.	1	1520327	0	G	A	bias_e_value=1.29977	bias_p_value=6.02241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.8	fisher_strand_p_value=3.39029e-08	frequency=2.836e-01	ks_quality_p_value=0.974665	major_base=G	major_cov=14/34	major_frequency=7.164e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=14/34	total_cov=33/34
RA	1189	.	1	1520370	0	T	A	bias_e_value=98.5501	bias_p_value=4.56625e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.0	fisher_strand_p_value=3.35639e-06	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=24/35	major_frequency=7.662e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.338e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=24/35	total_cov=42/35
RA	1190	.	1	1521557	0	G	T	bias_e_value=0.000303688	bias_p_value=1.40712e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.9	fisher_strand_p_value=5.64324e-12	frequency=2.759e-01	ks_quality_p_value=0.924208	major_base=G	major_cov=14/49	major_frequency=7.241e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=14/49	total_cov=40/49
RA	1191	.	1	1521577	0	G	C	bias_e_value=2.5102e-05	bias_p_value=1.16308e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.3	fisher_strand_p_value=3.93413e-13	frequency=2.921e-01	ks_quality_p_value=1	major_base=G	major_cov=13/50	major_frequency=7.079e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=13/50	total_cov=39/50
RA	1192	.	1	1521623	0	G	C	bias_e_value=0.605219	bias_p_value=2.80424e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.5	fisher_strand_p_value=1.47335e-08	frequency=2.159e-01	ks_quality_p_value=1	major_base=G	major_cov=21/48	major_frequency=7.841e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=21/48	total_cov=40/48
RA	1193	.	1	1522625	0	T	C	consensus_score=398.1	frequency=1	major_base=C	major_cov=60/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/53
RA	1194	.	1	1523674	0	G	T	consensus_score=366.1	frequency=1	major_base=T	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	1195	.	1	1525576	0	C	A	consensus_score=305.8	frequency=1	major_base=A	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	1196	.	1	1526627	0	G	A	consensus_score=213.2	frequency=1	major_base=A	major_cov=23/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/38
RA	1197	.	1	1529478	1	.	C	bias_e_value=2158230	bias_p_value=1	consensus_score=252.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/24	major_frequency=9.867e-01	minor_base=T	minor_cov=1/0	new_cov=50/24	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/24
RA	1198	.	1	1531174	0	C	T	consensus_score=279.5	frequency=1	major_base=T	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	1199	.	1	1531813	0	A	C	consensus_score=503.8	frequency=1	major_base=C	major_cov=60/88	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/88	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/88
RA	1200	.	1	1532817	0	C	A	consensus_score=413.0	frequency=1	major_base=A	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	1201	.	1	1538376	0	A	G	consensus_score=459.9	frequency=1	major_base=G	major_cov=60/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/77
RA	1202	.	1	1540067	0	T	G	consensus_score=136.6	frequency=1	major_base=G	major_cov=20/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	1203	.	1	1542537	0	A	C	bias_e_value=19070.2	bias_p_value=0.00883603	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.2	fisher_strand_p_value=0.00113566	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=29/31	major_frequency=6.667e-01	minor_base=C	minor_cov=4/26	new_cov=4/26	polymorphism_frequency=3.333e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=29/31	total_cov=34/57
RA	1204	.	1	1544205	0	C	T	consensus_score=252.8	frequency=1	major_base=T	major_cov=38/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/36
RA	1205	.	1	1552077	0	A	G	bias_e_value=792121	bias_p_value=0.367024	consensus_score=294.9	fisher_strand_p_value=0.116621	frequency=1	ks_quality_p_value=0.999216	major_base=G	major_cov=45/41	major_frequency=9.663e-01	minor_base=A	minor_cov=0/3	new_cov=45/41	polymorphism_frequency=9.663e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/3	total_cov=45/44
RA	1206	.	1	1553254	0	G	C	consensus_score=299.0	frequency=1	major_base=C	major_cov=40/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/43
RA	1207	.	1	1555942	0	T	C	consensus_score=91.7	frequency=1	major_base=C	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	1208	.	1	1560522	0	C	T	consensus_score=210.1	frequency=1	major_base=T	major_cov=28/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/33
RA	1209	.	1	1562958	0	T	C	consensus_score=184.1	frequency=1	major_base=C	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	1210	.	1	1565166	0	G	T	bias_e_value=0.0914128	bias_p_value=4.23555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=2.01474e-09	frequency=2.787e-01	ks_quality_p_value=1	major_base=G	major_cov=36/8	major_frequency=7.213e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.787e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	1211	.	1	1565172	0	C	A	bias_e_value=0.0350177	bias_p_value=1.62252e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.8	fisher_strand_p_value=7.47542e-10	frequency=3.115e-01	ks_quality_p_value=0.985277	major_base=C	major_cov=34/8	major_frequency=6.885e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.115e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=34/8	total_cov=34/27
RA	1212	.	1	1568600	0	T	C	consensus_score=265.0	frequency=1	major_base=C	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	1213	.	1	1571114	0	A	.	consensus_score=39.0	frequency=1	major_base=.	major_cov=9/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/1
RA	1214	.	1	1571115	0	T	.	consensus_score=39.0	frequency=1	major_base=.	major_cov=9/1	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/1	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/1
RA	1215	.	1	1573032	0	G	A	bias_e_value=0.398435	bias_p_value=1.84612e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=1.08472e-08	frequency=2.400e-01	ks_quality_p_value=0.873946	major_base=G	major_cov=15/42	major_frequency=7.600e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=15/42	total_cov=33/42
RA	1216	.	1	1573047	0	G	A	bias_e_value=1769660	bias_p_value=0.819962	consensus_score=197.5	fisher_strand_p_value=0.463768	frequency=1	ks_quality_p_value=0.999574	major_base=A	major_cov=31/37	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=31/37	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/37
RA	1217	.	1	1579154	0	C	T	consensus_score=325.3	frequency=1	major_base=T	major_cov=38/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/57
RA	1218	.	1	1582991	0	T	G	consensus_score=271.7	frequency=1	major_base=G	major_cov=34/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/45
RA	1219	.	1	1585931	0	C	T	bias_e_value=567.631	bias_p_value=0.000263008	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.6	fisher_strand_p_value=2.24732e-05	frequency=2.388e-01	ks_quality_p_value=1	major_base=C	major_cov=29/22	major_frequency=7.612e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.388e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=29/22	total_cov=29/38
RA	1220	.	1	1588108	0	A	G	consensus_score=183.6	frequency=1	major_base=G	major_cov=29/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/23
RA	1221	.	1	1590180	0	A	G	consensus_score=196.6	frequency=1	major_base=G	major_cov=28/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/32
RA	1222	.	1	1594935	0	C	T	consensus_score=117.9	frequency=1	major_base=T	major_cov=19/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/16
RA	1223	.	1	1595211	0	C	T	consensus_score=137.9	frequency=1	major_base=T	major_cov=12/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/29
RA	1224	.	1	1596143	0	G	A	consensus_score=77.2	frequency=1	major_base=A	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	1225	.	1	1599416	0	A	G	consensus_score=187.0	frequency=1	major_base=G	major_cov=32/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/21
RA	1226	.	1	1611559	0	T	C	consensus_score=26.0	frequency=1	major_base=C	major_cov=6/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/5
RA	1227	.	1	1618737	0	C	G	bias_e_value=2158230	bias_p_value=1	consensus_score=294.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/43	major_frequency=9.886e-01	minor_base=C	minor_cov=1/0	new_cov=44/43	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=45/43
RA	1228	.	1	1628619	0	A	G	consensus_score=293.9	frequency=1	major_base=G	major_cov=43/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/43
RA	1229	.	1	1636151	0	A	T	bias_e_value=819.117	bias_p_value=0.000379532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=76.0	fisher_strand_p_value=3.35824e-05	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=20/10	major_frequency=6.818e-01	minor_base=T	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.182e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=20/10	total_cov=20/24
RA	1230	.	1	1637865	0	G	A	consensus_score=190.4	frequency=1	major_base=A	major_cov=31/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/25
RA	1231	.	1	1640983	0	T	C	bias_e_value=2158230	bias_p_value=1	consensus_score=215.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999561	major_base=C	major_cov=34/33	major_frequency=9.853e-01	minor_base=A	minor_cov=0/1	new_cov=34/33	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/34
RA	1232	.	1	1645354	0	C	T	bias_e_value=173637	bias_p_value=0.0804535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=0.236488	frequency=5.461e-01	ks_quality_p_value=0.0659144	major_base=T	major_cov=36/41	major_frequency=5.461e-01	minor_base=C	minor_cov=37/27	new_cov=36/41	polymorphism_frequency=5.461e-01	polymorphism_score=174.2	prediction=polymorphism	ref_cov=37/27	total_cov=73/69
RA	1233	.	1	1645382	0	A	G	bias_e_value=1467360	bias_p_value=0.679892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.9	fisher_strand_p_value=0.318938	frequency=4.150e-01	ks_quality_p_value=0.990396	major_base=A	major_cov=47/39	major_frequency=5.850e-01	minor_base=G	minor_cov=28/33	new_cov=28/33	polymorphism_frequency=4.150e-01	polymorphism_score=144.8	prediction=polymorphism	ref_cov=47/39	total_cov=75/73
RA	1234	.	1	1645385	0	C	G	bias_e_value=12713.5	bias_p_value=0.00589071	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.3	fisher_strand_p_value=0.307542	frequency=6.181e-01	ks_quality_p_value=0.00232345	major_base=G	major_cov=42/47	major_frequency=6.181e-01	minor_base=C	minor_cov=31/24	new_cov=42/47	polymorphism_frequency=6.181e-01	polymorphism_score=193.0	prediction=polymorphism	ref_cov=31/24	total_cov=73/71
RA	1235	.	1	1645429	0	T	C	bias_e_value=526558	bias_p_value=0.243977	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.729719	frequency=4.962e-01	ks_quality_p_value=0.0897322	major_base=T	major_cov=34/33	major_frequency=5.038e-01	minor_base=C	minor_cov=31/35	new_cov=31/35	polymorphism_frequency=4.962e-01	polymorphism_score=172.9	prediction=polymorphism	ref_cov=34/33	total_cov=66/69
RA	1236	.	1	1645430	0	C	A	bias_e_value=52549.3	bias_p_value=0.0243483	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.1	fisher_strand_p_value=0.733516	frequency=4.891e-01	ks_quality_p_value=0.00502728	major_base=C	major_cov=36/34	major_frequency=5.109e-01	minor_base=A	minor_cov=32/35	new_cov=32/35	polymorphism_frequency=4.891e-01	polymorphism_score=210.3	prediction=polymorphism	ref_cov=36/34	total_cov=68/70
RA	1237	.	1	1645431	0	C	A	bias_e_value=448155	bias_p_value=0.207649	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.8	fisher_strand_p_value=0.609657	frequency=5.000e-01	ks_quality_p_value=0.0863561	major_base=C	major_cov=36/33	major_frequency=5.000e-01	minor_base=A	minor_cov=32/37	new_cov=32/37	polymorphism_frequency=5.000e-01	polymorphism_score=204.9	prediction=polymorphism	ref_cov=36/33	total_cov=68/70
RA	1238	.	1	1645460	0	T	C	bias_e_value=1356420	bias_p_value=0.62849	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.9	fisher_strand_p_value=1	frequency=2.574e-01	ks_quality_p_value=0.273816	major_base=T	major_cov=49/52	major_frequency=7.426e-01	minor_base=C	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=2.574e-01	polymorphism_score=74.3	prediction=polymorphism	ref_cov=49/52	total_cov=66/72
RA	1239	.	1	1645463	0	G	A	bias_e_value=366824	bias_p_value=0.169965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.2	fisher_strand_p_value=0.694991	frequency=2.426e-01	ks_quality_p_value=0.0580964	major_base=G	major_cov=51/52	major_frequency=7.574e-01	minor_base=A	minor_cov=15/18	new_cov=15/18	polymorphism_frequency=2.426e-01	polymorphism_score=72.0	prediction=polymorphism	ref_cov=51/52	total_cov=66/72
RA	1240	.	1	1645487	0	G	A	bias_e_value=7716.36	bias_p_value=0.00357532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.6	fisher_strand_p_value=0.498571	frequency=3.986e-01	ks_quality_p_value=0.00081402	major_base=G	major_cov=40/46	major_frequency=6.014e-01	minor_base=A	minor_cov=30/27	new_cov=30/27	polymorphism_frequency=3.986e-01	polymorphism_score=139.8	prediction=polymorphism	ref_cov=40/46	total_cov=71/73
RA	1241	.	1	1645502	0	C	T	bias_e_value=194996	bias_p_value=0.0903501	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.6	fisher_strand_p_value=0.488621	frequency=3.706e-01	ks_quality_p_value=0.0368573	major_base=C	major_cov=41/49	major_frequency=6.294e-01	minor_base=T	minor_cov=28/25	new_cov=28/25	polymorphism_frequency=3.706e-01	polymorphism_score=134.6	prediction=polymorphism	ref_cov=41/49	total_cov=71/75
RA	1242	.	1	1645518	0	A	G	bias_e_value=89479.8	bias_p_value=0.0414599	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.4	fisher_strand_p_value=0.400016	frequency=3.618e-01	ks_quality_p_value=0.0173619	major_base=A	major_cov=50/47	major_frequency=6.382e-01	minor_base=G	minor_cov=24/31	new_cov=24/31	polymorphism_frequency=3.618e-01	polymorphism_score=130.6	prediction=polymorphism	ref_cov=50/47	total_cov=75/81
RA	1243	.	1	1645565	0	C	A	bias_e_value=108428	bias_p_value=0.0502391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.5	fisher_strand_p_value=0.107759	frequency=3.758e-01	ks_quality_p_value=0.0812499	major_base=C	major_cov=54/49	major_frequency=6.242e-01	minor_base=A	minor_cov=24/38	new_cov=24/38	polymorphism_frequency=3.758e-01	polymorphism_score=186.2	prediction=polymorphism	ref_cov=54/49	total_cov=78/87
RA	1244	.	1	1645566	0	G	A	bias_e_value=140358	bias_p_value=0.0650339	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.3	fisher_strand_p_value=0.148047	frequency=3.865e-01	ks_quality_p_value=0.0809939	major_base=G	major_cov=52/48	major_frequency=6.135e-01	minor_base=A	minor_cov=25/38	new_cov=25/38	polymorphism_frequency=3.865e-01	polymorphism_score=161.0	prediction=polymorphism	ref_cov=52/48	total_cov=78/86
RA	1245	.	1	1648783	0	C	T	consensus_score=275.5	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	1246	.	1	1650777	0	C	T	bias_e_value=0.00102259	bias_p_value=4.73808e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.5	fisher_strand_p_value=1.84237e-11	frequency=3.521e-01	ks_quality_p_value=1	major_base=C	major_cov=36/10	major_frequency=6.479e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.521e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=36/10	total_cov=36/35
RA	1247	.	1	1653537	0	C	T	consensus_score=244.8	frequency=1	major_base=T	major_cov=40/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/32
RA	1248	.	1	1659252	0	A	T	bias_e_value=0.0547162	bias_p_value=2.53524e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.8	fisher_strand_p_value=1.17583e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=A	major_cov=35/3	major_frequency=7.451e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.549e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=35/3	total_cov=35/16
RA	1249	.	1	1669869	0	A	C	bias_e_value=0.0483472	bias_p_value=2.24013e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.2	fisher_strand_p_value=1.03275e-09	frequency=4.328e-01	ks_quality_p_value=1	major_base=A	major_cov=26/12	major_frequency=5.672e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=4.328e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=26/12	total_cov=26/42
RA	1250	.	1	1670399	0	A	C	consensus_score=320.1	frequency=1	major_base=C	major_cov=44/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/46
RA	1251	.	1	1681397	0	A	C	consensus_score=134.8	frequency=1	major_base=C	major_cov=23/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/18
RA	1252	.	1	1690049	0	C	T	consensus_score=320.7	frequency=1	major_base=T	major_cov=53/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/38
RA	1253	.	1	1690517	0	T	C	consensus_score=360.1	frequency=1	major_base=C	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	1254	.	1	1693712	0	T	C	consensus_score=437.1	frequency=1	major_base=C	major_cov=72/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/52
RA	1255	.	1	1697062	0	C	T	bias_e_value=0.0149532	bias_p_value=6.92845e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.6	fisher_strand_p_value=3.02293e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=22/50	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=22/50	total_cov=46/50
RA	1256	.	1	1697543	0	A	G	consensus_score=311.7	frequency=1	major_base=G	major_cov=42/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	1257	.	1	1697627	0	T	C	consensus_score=228.4	frequency=1	major_base=C	major_cov=23/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/46
RA	1258	.	1	1727785	0	G	A	bias_e_value=0.00292929	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.1	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	1259	.	1	1727831	0	C	T	bias_e_value=0.52867	bias_p_value=2.44955e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.5	fisher_strand_p_value=1.27742e-08	frequency=2.250e-01	ks_quality_p_value=1	major_base=C	major_cov=45/17	major_frequency=7.750e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.250e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=45/17	total_cov=46/36
RA	1260	.	1	1739440	0	A	T	bias_e_value=0.000192477	bias_p_value=8.9183e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.0	fisher_strand_p_value=3.24859e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=6/48	major_frequency=7.500e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=6/48	total_cov=24/48
RA	1261	.	1	1739464	0	T	G	bias_e_value=0.00103554	bias_p_value=4.79812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.0	fisher_strand_p_value=1.88534e-11	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=T	major_cov=8/45	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=8/45	total_cov=29/45
RA	1262	.	1	1744156	0	C	T	consensus_score=356.1	frequency=1	major_base=T	major_cov=43/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/59
RA	1263	.	1	1744942	0	C	T	consensus_score=227.0	frequency=1	major_base=T	major_cov=38/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/26
RA	1264	.	1	1748466	0	A	G	consensus_score=281.0	frequency=1	major_base=G	major_cov=40/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/44
RA	1265	.	1	1748613	0	C	T	bias_e_value=22.8283	bias_p_value=1.05773e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.3	fisher_strand_p_value=7.03774e-07	frequency=2.727e-01	ks_quality_p_value=0.990307	major_base=C	major_cov=33/23	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=33/23	total_cov=33/45
RA	1266	.	1	1748629	0	A	C	bias_e_value=0.0910334	bias_p_value=4.21797e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=2.00596e-09	frequency=3.857e-01	ks_quality_p_value=1	major_base=A	major_cov=29/14	major_frequency=6.143e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.857e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=29/14	total_cov=29/41
RA	1267	.	1	1748643	0	A	C	bias_e_value=9.18449e-06	bias_p_value=4.25557e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.4	fisher_strand_p_value=1.39053e-13	frequency=4.923e-01	ks_quality_p_value=1	major_base=A	major_cov=28/5	major_frequency=5.077e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.923e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=28/5	total_cov=28/37
RA	1268	.	1	1748715	0	T	C	consensus_score=217.3	frequency=1	major_base=C	major_cov=26/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/35
RA	1269	.	1	1749558	0	A	G	consensus_score=321.7	frequency=1	major_base=G	major_cov=54/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	1270	.	1	1751287	0	A	G	consensus_score=227.4	frequency=1	major_base=G	major_cov=32/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/33
RA	1271	.	1	1751590	0	A	G	consensus_score=312.1	frequency=1	major_base=G	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	1272	.	1	1753289	0	T	A	bias_e_value=0.00827345	bias_p_value=3.83345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.6	fisher_strand_p_value=1.62861e-10	frequency=2.909e-01	ks_quality_p_value=1	major_base=T	major_cov=4/35	major_frequency=7.091e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.909e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=4/35	total_cov=20/35
RA	1273	.	1	1756123	0	T	G	bias_e_value=2158230	bias_p_value=1	consensus_score=233.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999586	major_base=G	major_cov=28/41	major_frequency=9.857e-01	minor_base=A	minor_cov=0/1	new_cov=28/41	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/42
RA	1274	.	1	1759793	0	G	A	consensus_score=264.1	frequency=1	major_base=A	major_cov=48/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/30
RA	1275	.	1	1764878	0	C	T	consensus_score=270.7	frequency=1	major_base=T	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	1276	.	1	1794175	0	T	C	bias_e_value=2158230	bias_p_value=1	consensus_score=216.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=34/39	major_frequency=9.733e-01	minor_base=T	minor_cov=1/1	new_cov=34/39	polymorphism_frequency=9.733e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=35/40
RA	1277	.	1	1800283	0	G	A	consensus_score=342.0	frequency=1	major_base=A	major_cov=57/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/43
RA	1278	.	1	1800455	0	T	.	consensus_score=352.7	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	1279	.	1	1800456	0	T	.	consensus_score=352.7	frequency=1	major_base=.	major_cov=35/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/44
RA	1280	.	1	1802715	0	A	T	bias_e_value=2158230	bias_p_value=1	consensus_score=313.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999771	major_base=T	major_cov=52/41	major_frequency=9.894e-01	minor_base=C	minor_cov=1/0	new_cov=52/41	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=54/41
RA	1281	.	1	1807432	0	A	G	consensus_score=182.3	frequency=1	major_base=G	major_cov=22/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/33
RA	1282	.	1	1812683	0	T	C	consensus_score=202.7	frequency=1	major_base=C	major_cov=37/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/23
RA	1283	.	1	1815121	0	G	A	consensus_score=209.5	frequency=1	major_base=A	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	1284	.	1	1815619	0	T	C	consensus_score=284.6	frequency=1	major_base=C	major_cov=39/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/42
RA	1285	.	1	1822617	0	T	C	consensus_score=334.5	frequency=1	major_base=C	major_cov=44/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/51
RA	1286	.	1	1834846	0	G	A	consensus_score=274.3	frequency=1	major_base=A	major_cov=38/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/41
RA	1287	.	1	1835677	0	G	A	consensus_score=245.0	frequency=1	major_base=A	major_cov=33/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/41
RA	1288	.	1	1836967	0	T	C	consensus_score=272.9	frequency=1	major_base=C	major_cov=37/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/40
RA	1289	.	1	1837578	0	T	C	consensus_score=211.0	frequency=1	major_base=C	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	1290	.	1	1838098	0	T	C	consensus_score=193.4	frequency=1	major_base=C	major_cov=26/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	1291	.	1	1847165	0	G	A	consensus_score=284.7	frequency=1	major_base=A	major_cov=48/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/32
RA	1292	.	1	1853672	0	G	A	consensus_score=208.2	frequency=1	major_base=A	major_cov=38/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/23
RA	1293	.	1	1855601	0	G	A	bias_e_value=2.33931e-05	bias_p_value=1.0839e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.1	fisher_strand_p_value=3.65727e-13	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=64/18	major_frequency=7.664e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.336e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=64/18	total_cov=64/43
RA	1294	.	1	1855610	0	C	T	bias_e_value=4.41521e-05	bias_p_value=2.04576e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.9	fisher_strand_p_value=7.05939e-13	frequency=2.243e-01	ks_quality_p_value=1	major_base=C	major_cov=65/18	major_frequency=7.757e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=65/18	total_cov=65/42
RA	1295	.	1	1857068	0	A	G	consensus_score=301.3	frequency=1	major_base=G	major_cov=42/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/45
RA	1296	.	1	1857240	0	T	G	consensus_score=273.2	frequency=1	major_base=G	major_cov=38/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/39
RA	1297	.	1	1860670	0	A	C	bias_e_value=14.6497	bias_p_value=6.78784e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=4.33703e-07	frequency=3.269e-01	ks_quality_p_value=1	major_base=A	major_cov=25/10	major_frequency=6.731e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.269e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=25/10	total_cov=25/27
RA	1298	.	1	1862130	0	C	T	bias_e_value=8.12788e-06	bias_p_value=3.76599e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.1	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=1	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	1299	.	1	1862135	0	C	T	bias_e_value=8.12765e-06	bias_p_value=3.76589e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.2	fisher_strand_p_value=1.2255e-13	frequency=3.382e-01	ks_quality_p_value=0.999972	major_base=C	major_cov=5/40	major_frequency=6.618e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.382e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=5/40	total_cov=28/40
RA	1300	.	1	1862168	0	T	A	bias_e_value=0.0155779	bias_p_value=7.21791e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.8	fisher_strand_p_value=3.15512e-10	frequency=2.714e-01	ks_quality_p_value=1	major_base=T	major_cov=10/41	major_frequency=7.286e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=10/41	total_cov=29/41
RA	1301	.	1	1866211	0	A	G	consensus_score=271.0	frequency=1	major_base=G	major_cov=39/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/36
RA	1302	.	1	1889308	0	T	C	consensus_score=260.1	frequency=1	major_base=C	major_cov=32/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/45
RA	1303	.	1	1892783	0	A	G	consensus_score=276.3	frequency=1	major_base=G	major_cov=40/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/39
RA	1304	.	1	1894474	0	C	A	consensus_score=240.4	frequency=1	major_base=A	major_cov=39/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/28
RA	1305	.	1	1894660	0	C	T	consensus_score=288.8	frequency=1	major_base=T	major_cov=49/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/36
RA	1306	.	1	1896489	0	T	C	consensus_score=213.6	frequency=1	major_base=C	major_cov=30/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/34
RA	1307	.	1	1898039	0	T	C	consensus_score=285.3	frequency=1	major_base=C	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	1308	.	1	1905090	0	T	C	consensus_score=370.2	frequency=1	major_base=C	major_cov=48/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/55
RA	1309	.	1	1927451	0	C	G	bias_e_value=2040270	bias_p_value=0.945347	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.5	fisher_strand_p_value=0.688156	frequency=4.483e-01	ks_quality_p_value=1	major_base=C	major_cov=12/4	major_frequency=5.517e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.483e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=12/4	total_cov=21/9
RA	1310	.	1	1930004	0	C	T	consensus_score=445.0	frequency=1	major_base=T	major_cov=65/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/59
RA	1311	.	1	1942424	0	A	G	consensus_score=250.3	frequency=1	major_base=G	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	1312	.	1	1952356	0	A	G	consensus_score=335.4	frequency=1	major_base=G	major_cov=45/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/50
RA	1313	.	1	1954112	0	T	C	consensus_score=391.6	frequency=1	major_base=C	major_cov=67/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/45
RA	1314	.	1	1955320	0	T	C	consensus_score=316.1	frequency=1	major_base=C	major_cov=40/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/53
RA	1315	.	1	1957085	0	C	T	consensus_score=359.3	frequency=1	major_base=T	major_cov=62/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/42
RA	1316	.	1	1958320	0	C	T	bias_e_value=1054.95	bias_p_value=0.000488802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.5	fisher_strand_p_value=4.43414e-05	frequency=3.929e-01	ks_quality_p_value=1	major_base=C	major_cov=17/17	major_frequency=6.071e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.929e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=17/17	total_cov=40/17
RA	1317	.	1	1959496	0	T	C	consensus_score=398.4	frequency=1	major_base=C	major_cov=57/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/58
RA	1318	.	1	1962465	0	T	A	bias_e_value=4.01664	bias_p_value=1.86108e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.4	fisher_strand_p_value=1.09287e-07	frequency=2.063e-01	ks_quality_p_value=1	major_base=T	major_cov=40/10	major_frequency=7.937e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.063e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=40/10	total_cov=40/23
RA	1319	.	1	1962484	0	G	A	bias_e_value=11.3284	bias_p_value=5.24891e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.5	fisher_strand_p_value=3.29594e-07	frequency=2.069e-01	ks_quality_p_value=1	major_base=G	major_cov=37/9	major_frequency=7.931e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.069e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=37/9	total_cov=37/21
RA	1320	.	1	1962493	0	G	C	bias_e_value=3.24447	bias_p_value=1.5033e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.4	fisher_strand_p_value=8.71175e-08	frequency=2.295e-01	ks_quality_p_value=1	major_base=G	major_cov=37/10	major_frequency=7.705e-01	minor_base=C	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.295e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=37/10	total_cov=37/24
RA	1321	.	1	1969295	0	A	T	bias_e_value=2.44347	bias_p_value=1.13216e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.7	fisher_strand_p_value=6.44857e-08	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=8/37	major_frequency=7.759e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.241e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=8/37	total_cov=24/37
RA	1322	.	1	1969313	0	A	T	bias_e_value=0.0871437	bias_p_value=4.03774e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.7	fisher_strand_p_value=1.91607e-09	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=10/38	major_frequency=7.273e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=10/38	total_cov=28/38
RA	1323	.	1	1975733	0	T	C	consensus_score=327.2	frequency=1	major_base=C	major_cov=43/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/53
RA	1324	.	1	1978693	0	G	A	consensus_score=256.9	frequency=1	major_base=A	major_cov=42/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/31
RA	1325	.	1	1982729	0	G	A	bias_e_value=1762340	bias_p_value=0.816569	consensus_score=335.4	fisher_strand_p_value=0.459184	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/53	major_frequency=9.898e-01	minor_base=C	minor_cov=1/0	new_cov=44/53	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/53
RA	1326	.	1	1984274	0	G	A	bias_e_value=2.2935	bias_p_value=1.06268e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.0	fisher_strand_p_value=6.09838e-08	frequency=3.171e-01	ks_quality_p_value=0.98874	major_base=G	major_cov=33/23	major_frequency=6.829e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.171e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=33/23	total_cov=33/49
RA	1327	.	1	1984961	0	A	.	consensus_score=332.1	frequency=1	major_base=.	major_cov=33/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/42
RA	1328	.	1	1988432	0	T	A	bias_e_value=4.62207e-09	bias_p_value=2.1416e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.0	fisher_strand_p_value=5.57333e-17	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.897e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=5/41	total_cov=37/41
RA	1329	.	1	1988461	0	T	A	bias_e_value=0.0545842	bias_p_value=2.52912e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.4	fisher_strand_p_value=1.17285e-09	frequency=2.530e-01	ks_quality_p_value=1	major_base=T	major_cov=17/45	major_frequency=7.470e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.530e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=17/45	total_cov=39/45
RA	1330	.	1	1988503	0	T	A	bias_e_value=1.59458e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.0	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=11/47	major_frequency=6.667e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.333e-01	polymorphism_score=23.8	prediction=polymorphism	ref_cov=11/47	total_cov=40/47
RA	1331	.	1	1989192	0	T	G	bias_e_value=1.26196e-07	bias_p_value=5.84721e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.0	fisher_strand_p_value=1.66938e-15	frequency=2.788e-01	ks_quality_p_value=1	major_base=T	major_cov=14/61	major_frequency=7.212e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.788e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=14/61	total_cov=43/61
RA	1332	.	1	1992592	0	G	A	consensus_score=299.4	frequency=1	major_base=A	major_cov=41/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/44
RA	1333	.	1	1994532	0	G	A	consensus_score=287.0	frequency=1	major_base=A	major_cov=47/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/36
RA	1334	.	1	2002089	0	G	A	consensus_score=233.8	frequency=1	major_base=A	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	1335	.	1	2005456	0	C	G	bias_e_value=2158230	bias_p_value=1	consensus_score=317.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=47/43	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=47/43	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/43
RA	1336	.	1	2006877	0	T	A	bias_e_value=185.787	bias_p_value=8.60829e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.9	fisher_strand_p_value=6.66333e-06	frequency=3.667e-01	ks_quality_p_value=1	major_base=T	major_cov=16/3	major_frequency=6.333e-01	minor_base=A	minor_cov=0/11	new_cov=0/11	polymorphism_frequency=3.667e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=16/3	total_cov=16/14
RA	1337	.	1	2015388	0	C	T	consensus_score=297.5	frequency=1	major_base=T	major_cov=40/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/47
RA	1338	.	1	2022399	0	A	G	consensus_score=322.8	frequency=1	major_base=G	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	1339	.	1	2023545	0	G	A	consensus_score=279.4	frequency=1	major_base=A	major_cov=39/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/41
RA	1340	.	1	2024332	0	T	G	consensus_score=184.1	frequency=1	major_base=G	major_cov=25/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/28
RA	1341	.	1	2028516	0	C	T	consensus_score=256.5	frequency=1	major_base=T	major_cov=40/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/34
RA	1342	.	1	2032886	0	G	A	consensus_score=18.4	frequency=1	major_base=A	major_cov=4/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/3
RA	1343	.	1	2035785	0	T	G	bias_e_value=1.26554e-06	bias_p_value=5.86381e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.0	fisher_strand_p_value=1.79592e-14	frequency=3.483e-01	ks_quality_p_value=1	major_base=T	major_cov=12/46	major_frequency=6.517e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.483e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=12/46	total_cov=43/46
RA	1344	.	1	2045297	0	G	A	consensus_score=174.9	frequency=1	major_base=A	major_cov=26/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/26
RA	1345	.	1	2046968	0	G	A	consensus_score=216.6	frequency=1	major_base=A	major_cov=22/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/41
RA	1346	.	1	2051727	0	C	T	consensus_score=189.8	frequency=1	major_base=T	major_cov=26/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/30
RA	1347	.	1	2077564	0	C	A	bias_e_value=0.000204743	bias_p_value=9.48661e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.2	fisher_strand_p_value=3.4637e-12	frequency=2.778e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.222e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=15/50	total_cov=40/50
RA	1348	.	1	2078424	0	T	C	consensus_score=289.0	frequency=1	major_base=C	major_cov=45/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/36
RA	1349	.	1	2082515	0	C	G	bias_e_value=0.000286707	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.6	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	1350	.	1	2084518	0	T	C	consensus_score=256.6	frequency=1	major_base=C	major_cov=36/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	1351	.	1	2086160	0	T	A	bias_e_value=1.38453	bias_p_value=6.41514e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.3	fisher_strand_p_value=3.53284e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=42/14	total_cov=42/30
RA	1352	.	1	2086373	0	A	G	consensus_score=259.1	frequency=1	major_base=G	major_cov=38/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/34
RA	1353	.	1	2088197	0	G	A	consensus_score=141.6	frequency=1	major_base=A	major_cov=17/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	1354	.	1	2089546	0	C	T	bias_e_value=2158230	bias_p_value=1	consensus_score=248.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/37	major_frequency=9.865e-01	minor_base=.	minor_cov=1/0	new_cov=36/37	polymorphism_frequency=9.865e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=37/37
RA	1355	.	1	2092109	0	T	C	consensus_score=235.8	frequency=1	major_base=C	major_cov=36/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/33
RA	1356	.	1	2095862	0	A	G	consensus_score=308.9	frequency=1	major_base=G	major_cov=45/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/44
RA	1357	.	1	2103464	0	C	T	consensus_score=184.1	frequency=1	major_base=T	major_cov=30/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/24
RA	1358	.	1	2104404	0	C	A	consensus_score=232.6	frequency=1	major_base=A	major_cov=38/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/28
RA	1359	.	1	2105200	0	A	G	consensus_score=246.2	frequency=1	major_base=G	major_cov=38/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/33
RA	1360	.	1	2109648	0	A	G	consensus_score=244.7	frequency=1	major_base=G	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	1361	.	1	2123113	0	C	A	bias_e_value=0.305346	bias_p_value=1.4148e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.2	fisher_strand_p_value=7.1619e-09	frequency=2.561e-01	ks_quality_p_value=1	major_base=C	major_cov=42/19	major_frequency=7.439e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.561e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=42/19	total_cov=42/40
RA	1362	.	1	2123129	0	C	A	bias_e_value=0.0566719	bias_p_value=2.62585e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.1	fisher_strand_p_value=1.21994e-09	frequency=3.768e-01	ks_quality_p_value=1	major_base=C	major_cov=30/13	major_frequency=6.232e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.768e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=30/13	total_cov=30/39
RA	1363	.	1	2127968	0	T	C	consensus_score=307.0	frequency=1	major_base=C	major_cov=44/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/45
RA	1364	.	1	2134206	0	T	C	consensus_score=301.0	frequency=1	major_base=C	major_cov=38/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/48
RA	1365	.	1	2141579	0	T	A	bias_e_value=32.9651	bias_p_value=1.52742e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.5	fisher_strand_p_value=1.03324e-06	frequency=2.568e-01	ks_quality_p_value=1	major_base=T	major_cov=34/21	major_frequency=7.432e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.568e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=34/21	total_cov=34/40
RA	1366	.	1	2143088	0	A	G	consensus_score=306.4	frequency=1	major_base=G	major_cov=39/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/46
RA	1367	.	1	2144284	0	G	A	bias_e_value=0.000114559	bias_p_value=5.30801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=1.89632e-12	frequency=2.547e-01	ks_quality_p_value=1	major_base=G	major_cov=58/21	major_frequency=7.453e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.547e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=58/21	total_cov=58/48
RA	1368	.	1	2144289	0	A	C	bias_e_value=3.42692e-07	bias_p_value=1.58784e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.8	fisher_strand_p_value=4.67045e-15	frequency=3.365e-01	ks_quality_p_value=1	major_base=A	major_cov=55/14	major_frequency=6.635e-01	minor_base=C	minor_cov=1/34	new_cov=1/34	polymorphism_frequency=3.365e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=55/14	total_cov=56/48
RA	1369	.	1	2144309	0	A	C	bias_e_value=9.66188e-12	bias_p_value=4.47677e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=1.00042e-19	frequency=3.737e-01	ks_quality_p_value=1	major_base=A	major_cov=54/8	major_frequency=6.263e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.737e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=54/8	total_cov=54/45
RA	1370	.	1	2147102	0	T	C	consensus_score=350.3	frequency=1	major_base=C	major_cov=48/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/62
RA	1371	.	1	2147731	0	G	A	consensus_score=280.7	frequency=1	major_base=A	major_cov=39/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
MC	1372	.	1	27206	27209	0	0	left_inside_cov=0	left_outside_cov=90	right_inside_cov=0	right_outside_cov=89
MC	1373	.	1	79042	79055	0	0	left_inside_cov=0	left_outside_cov=51	right_inside_cov=0	right_outside_cov=51
MC	1374	.	1	1289284	1289418	0	0	left_inside_cov=0	left_outside_cov=93	right_inside_cov=0	right_outside_cov=92
MC	1375	.	1	1420790	1420794	0	0	left_inside_cov=0	left_outside_cov=40	right_inside_cov=0	right_outside_cov=40
MC	1376	.	1	1442301	1443420	0	0	left_inside_cov=21	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
MC	1377	.	1	1542345	1542357	0	0	left_inside_cov=0	left_outside_cov=78	right_inside_cov=0	right_outside_cov=78
MC	1378	.	1	1773205	1773467	0	0	left_inside_cov=22	left_outside_cov=24	right_inside_cov=18	right_outside_cov=23
MC	1379	.	1	1877333	1877946	0	0	left_inside_cov=20	left_outside_cov=23	right_inside_cov=22	right_outside_cov=23
JC	1380	.	1	1	1	1	2158228	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=214	key=1__1__1__1__2158228__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=243	max_min_left=123	max_min_left_minus=112	max_min_left_plus=123	max_min_right=124	max_min_right_minus=124	max_min_right_plus=120	max_pos_hash_score=430	max_right=250	max_right_minus=250	max_right_plus=249	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	1381	.	1	5609	-1	1	5819	-1	0	alignment_overlap=5	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=209	key=1__5609__-1__1__5824__-1__5____251__251__1__1	max_left=142	max_left_minus=142	max_left_plus=55	max_min_left=116	max_min_left_minus=116	max_min_left_plus=55	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=420	max_right=244	max_right_minus=244	max_right_plus=243	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=7	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=5	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	1382	.	1	6715	1	1	7234	1	0	alignment_overlap=14	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.168e-02	junction_possible_overlap_registers=200	key=1__6715__1__1__7220__1__14____251__251__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.168e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=14	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=200	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1383	.	1	27210	1	1	27205	-1	0	alignment_overlap=5	coverage_minus=40	coverage_plus=48	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__27210__1__1__27210__-1__5____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=231	max_min_left=122	max_min_left_minus=97	max_min_left_plus=122	max_min_right=118	max_min_right_minus=117	max_min_right_plus=118	max_pos_hash_score=420	max_right=244	max_right_minus=244	max_right_plus=226	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	1384	.	1	75719	-1	1	75759	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.624e-02	junction_possible_overlap_registers=206	key=1__75719__-1__1__75767__-1__8____251__251__0__0	max_left=91	max_left_minus=91	max_left_plus=5	max_min_left=91	max_min_left_minus=91	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=238	max_right_minus=190	max_right_plus=238	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=3
JC	1385	.	1	79056	1	1	79041	-1	0	alignment_overlap=16	coverage_minus=16	coverage_plus=30	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=198	key=1__79056__1__1__79057__-1__16____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=226	max_min_left=112	max_min_left_minus=112	max_min_left_plus=88	max_min_right=113	max_min_right_minus=113	max_min_right_plus=105	max_pos_hash_score=398	max_right=214	max_right_minus=123	max_right_plus=214	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.58	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=16	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=46
JC	1386	.	1	111192	1	1	111702	1	0	alignment_overlap=15	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.485e-02	junction_possible_overlap_registers=199	key=1__111192__1__1__111687__1__15____251__251__0__0	max_left=184	max_left_minus=184	max_left_plus=71	max_min_left=71	max_min_left_minus=42	max_min_left_plus=71	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=400	max_right=194	max_right_minus=194	max_right_plus=165	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.485e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=15	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.93	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=157	side_2_redundant=0	total_non_overlap_reads=5
JC	1387	.	1	158341	-1	1	158434	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.687e-02	junction_possible_overlap_registers=207	key=1__158341__-1__1__158441__-1__7____251__251__0__0	max_left=141	max_left_minus=141	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=416	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.29	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=3
JC	1388	.	1	200071	-1	1	200261	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.674e-02	junction_possible_overlap_registers=202	key=1__200071__-1__1__200273__-1__12____251__251__0__0	max_left=87	max_left_minus=0	max_left_plus=87	max_min_left=87	max_min_left_minus=0	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.674e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.50	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=3
JC	1389	.	1	264873	1	1	265012	1	0	alignment_overlap=17	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__264873__1__1__264995__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=0	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	1390	.	1	264889	-1	1	264994	-1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=197	key=1__264889__-1__1__265011__-1__17____251__251__1__1	max_left=138	max_left_minus=138	max_left_plus=133	max_min_left=108	max_min_left_minus=107	max_min_left_plus=108	max_min_right=111	max_min_right_minus=15	max_min_right_plus=111	max_pos_hash_score=396	max_right=217	max_right_minus=217	max_right_plus=111	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.15	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	1391	.	1	265825	-1	1	265962	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__265825__-1__1__265965__-1__3____251__251__1__1	max_left=162	max_left_minus=85	max_left_plus=162	max_min_left=115	max_min_left_minus=85	max_min_left_plus=115	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=424	max_right=133	max_right_minus=86	max_right_plus=133	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	1392	.	1	272071	1	1	272411	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.203e-02	junction_possible_overlap_registers=205	key=1__272071__1__1__272402__1__9____251__251__0__0	max_left=120	max_left_minus=120	max_left_plus=120	max_min_left=120	max_min_left_minus=120	max_min_left_plus=113	max_min_right=38	max_min_right_minus=0	max_min_right_plus=38	max_pos_hash_score=412	max_right=129	max_right_minus=122	max_right_plus=129	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.203e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=4
JC	1393	.	1	302763	-1	1	302764	1	-4	alignment_overlap=-4	coverage_minus=45	coverage_plus=54	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=210	key=1__302763__-1__1__302764__1__-4__TTTG__251__251__0__0	max_left=246	max_left_minus=245	max_left_plus=246	max_min_left=123	max_min_left_minus=123	max_min_left_plus=119	max_min_right=122	max_min_right_minus=115	max_min_right_plus=122	max_pos_hash_score=418	max_right=244	max_right_minus=230	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=2	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=212	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99	unique_read_sequence=TTTG
JC	1394	.	1	303947	-1	1	304316	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.431e-02	junction_possible_overlap_registers=210	key=1__303947__-1__1__304320__-1__4____251__251__0__0	max_left=88	max_left_minus=19	max_left_plus=88	max_min_left=88	max_min_left_minus=19	max_min_left_plus=88	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=422	max_right=228	max_right_minus=228	max_right_plus=194	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.431e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=3
JC	1395	.	1	324241	1	1	324737	1	0	alignment_overlap=5	coverage_minus=7	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.370e-02	junction_possible_overlap_registers=209	key=1__324241__1__1__324732__1__5____251__251__0__0	max_left=100	max_left_minus=100	max_left_plus=72	max_min_left=100	max_min_left_minus=100	max_min_left_plus=72	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=420	max_right=206	max_right_minus=171	max_right_plus=206	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.11	new_junction_read_count=9	polymorphism_frequency=7.370e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.36	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.29	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=9
JC	1396	.	1	358699	-1	1	358801	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.924e-02	junction_possible_overlap_registers=207	key=1__358699__-1__1__358808__-1__7____251__251__0__0	max_left=166	max_left_minus=166	max_left_plus=155	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=103	max_min_right_minus=77	max_min_right_plus=103	max_pos_hash_score=416	max_right=103	max_right_minus=77	max_right_plus=103	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.924e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=104	side_2_redundant=0	total_non_overlap_reads=4
JC	1397	.	1	385082	1	1	385889	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.242e-02	junction_possible_overlap_registers=204	key=1__385082__1__1__385879__1__10____251__251__0__0	max_left=146	max_left_minus=142	max_left_plus=146	max_min_left=103	max_min_left_minus=0	max_min_left_plus=103	max_min_right=70	max_min_right_minus=70	max_min_right_plus=70	max_pos_hash_score=410	max_right=138	max_right_minus=70	max_right_plus=138	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.242e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	1398	.	1	420017	-1	1	420135	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.128e-02	junction_possible_overlap_registers=209	key=1__420017__-1__1__420140__-1__5____251__251__0__0	max_left=173	max_left_minus=173	max_left_plus=129	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=117	max_min_right_minus=73	max_min_right_plus=117	max_pos_hash_score=420	max_right=117	max_right_minus=73	max_right_plus=117	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.128e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.47	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.75	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=150	side_2_redundant=0	total_non_overlap_reads=3
JC	1399	.	1	426023	-1	1	426024	1	-5	alignment_overlap=-5	coverage_minus=44	coverage_plus=59	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__426023__-1__1__426024__1__-5__AATAA__251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=238	max_min_left=120	max_min_left_minus=120	max_min_left_plus=105	max_min_right=120	max_min_right_minus=118	max_min_right_plus=120	max_pos_hash_score=404	max_right=245	max_right_minus=245	max_right_plus=238	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=100	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=8	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=206	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103	unique_read_sequence=AATAA
JC	1400	.	1	483401	1	1	483682	1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.646e-02	junction_possible_overlap_registers=206	key=1__483401__1__1__483674__1__8____251__251__0__0	max_left=82	max_left_minus=82	max_left_plus=46	max_min_left=82	max_min_left_minus=82	max_min_left_plus=46	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=414	max_right=196	max_right_minus=195	max_right_plus=196	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=2.646e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.73	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.75	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=148	side_2_redundant=0	total_non_overlap_reads=4
JC	1401	.	1	566691	-1	1	567221	-1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.928e-02	junction_possible_overlap_registers=201	key=1__566691__-1__1__567234__-1__13____251__251__0__0	max_left=178	max_left_minus=178	max_left_plus=157	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=43	max_min_right_plus=81	max_pos_hash_score=404	max_right=81	max_right_minus=43	max_right_plus=81	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.928e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.52	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	1402	.	1	597065	-1	1	597385	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.150e-02	junction_possible_overlap_registers=202	key=1__597065__-1__1__597397__-1__12____251__251__0__0	max_left=154	max_left_minus=154	max_left_plus=101	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=85	max_min_right_minus=85	max_min_right_plus=65	max_pos_hash_score=406	max_right=147	max_right_minus=85	max_right_plus=147	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.150e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	1403	.	1	618280	1	1	618330	-1	-80	alignment_overlap=-80	coverage_minus=25	coverage_plus=40	flanking_left=251	flanking_right=251	frequency=7.966e-01	junction_possible_overlap_registers=134	key=1__618280__1__1__618330__-1__-80__TAGTGAATGTTTAACTCGCTCAAACCATTTTAAACCATAGAGTCGACTTAAAATGGCGCACCCGAGAGGATTCGAACCTC__251__251__0__0	max_left=166	max_left_minus=155	max_left_plus=166	max_min_left=84	max_min_left_minus=84	max_min_left_plus=78	max_min_right=85	max_min_right_minus=85	max_min_right_plus=79	max_pos_hash_score=270	max_right=165	max_right_minus=165	max_right_plus=159	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.18	new_junction_read_count=65	polymorphism_frequency=7.966e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.23	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=20	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=TAGTGAATGTTTAACTCGCTCAAACCATTTTAAACCATAGAGTCGACTTAAAATGGCGCACCCGAGAGGATTCGAACCTC
JC	1404	.	1	677302	-1	1	677387	-1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.950e-02	junction_possible_overlap_registers=203	key=1__677302__-1__1__677398__-1__11____251__251__0__0	max_left=154	max_left_minus=147	max_left_plus=154	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=88	max_min_right_minus=86	max_min_right_plus=88	max_pos_hash_score=408	max_right=88	max_right_minus=88	max_right_plus=88	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.950e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=4
JC	1405	.	1	684593	-1	1	684738	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=7.559e-02	junction_possible_overlap_registers=204	key=1__684593__-1__1__684748__-1__10____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=75	max_min_left_minus=45	max_min_left_plus=75	max_min_right=97	max_min_right_minus=97	max_min_right_plus=97	max_pos_hash_score=410	max_right=97	max_right_minus=97	max_right_plus=97	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=7.559e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=5
JC	1406	.	1	686831	-1	1	686832	1	-3	alignment_overlap=-3	coverage_minus=34	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=211	key=1__686831__-1__1__686832__1__-3__ATT__251__251__0__0	max_left=228	max_left_minus=216	max_left_plus=228	max_min_left=123	max_min_left_minus=123	max_min_left_plus=108	max_min_right=114	max_min_right_minus=114	max_min_right_plus=111	max_pos_hash_score=418	max_right=245	max_right_minus=214	max_right_plus=245	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=65	polymorphism_frequency=1.000e+00	pos_hash_score=52	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=3	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=211	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67	unique_read_sequence=ATT
JC	1407	.	1	716506	-1	1	716823	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.492e-02	junction_possible_overlap_registers=205	key=1__716506__-1__1__716832__-1__9____251__251__0__0	max_left=136	max_left_minus=136	max_left_plus=130	max_min_left=79	max_min_left_minus=58	max_min_left_plus=79	max_min_right=111	max_min_right_minus=106	max_min_right_plus=111	max_pos_hash_score=412	max_right=183	max_right_minus=183	max_right_plus=163	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.492e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=4
JC	1408	.	1	732132	1	1	732475	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.051e-02	junction_possible_overlap_registers=204	key=1__732132__1__1__732465__1__10____251__251__0__0	max_left=195	max_left_minus=195	max_left_plus=169	max_min_left=32	max_min_left_minus=0	max_min_left_plus=32	max_min_right=72	max_min_right_minus=64	max_min_right_plus=72	max_pos_hash_score=410	max_right=213	max_right_minus=64	max_right_plus=213	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=6.051e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=5
JC	1409	.	1	753603	-1	1	753686	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=206	key=1__753603__-1__1__753694__-1__8____251__251__0__0	max_left=166	max_left_minus=109	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=24	max_min_right_plus=77	max_pos_hash_score=414	max_right=77	max_right_minus=24	max_right_plus=77	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.82	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	1410	.	1	807700	1	1	808278	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.817e-02	junction_possible_overlap_registers=204	key=1__807700__1__1__808268__1__10____251__251__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=111	max_min_right_plus=104	max_pos_hash_score=410	max_right=111	max_right_minus=111	max_right_plus=104	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.817e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	1411	.	1	818963	-1	1	819529	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.217e-02	junction_possible_overlap_registers=204	key=1__818963__-1__1__819539__-1__10____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=77	max_pos_hash_score=410	max_right=77	max_right_minus=77	max_right_plus=77	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.217e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	1412	.	1	865747	-1	1	865993	-1	0	alignment_overlap=12	coverage_minus=8	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.087e-01	junction_possible_overlap_registers=202	key=1__865747__-1__1__866005__-1__12____251__251__0__0	max_left=106	max_left_minus=106	max_left_plus=85	max_min_left=106	max_min_left_minus=106	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=221	max_right_minus=221	max_right_plus=153	neg_log10_pos_hash_p_value=4.8	new_junction_coverage=0.12	new_junction_read_count=10	polymorphism_frequency=1.087e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=10
JC	1413	.	1	877207	-1	1	877341	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.390e-02	junction_possible_overlap_registers=208	key=1__877207__-1__1__877347__-1__6____251__251__0__0	max_left=198	max_left_minus=74	max_left_plus=198	max_min_left=109	max_min_left_minus=74	max_min_left_plus=109	max_min_right=57	max_min_right_minus=0	max_min_right_plus=57	max_pos_hash_score=418	max_right=136	max_right_minus=136	max_right_plus=136	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=4.390e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.31	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=5
JC	1414	.	1	900516	1	1	900866	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.567e-02	junction_possible_overlap_registers=203	key=1__900516__1__1__900855__1__11____251__251__0__0	max_left=204	max_left_minus=204	max_left_plus=179	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=111	max_min_right_minus=36	max_min_right_plus=111	max_pos_hash_score=408	max_right=111	max_right_minus=36	max_right_plus=111	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.567e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=3
JC	1415	.	1	907973	-1	1	908046	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.173e-02	junction_possible_overlap_registers=205	key=1__907973__-1__1__908055__-1__9____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=73	max_pos_hash_score=412	max_right=73	max_right_minus=73	max_right_plus=73	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.173e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=61	side_2_redundant=0	total_non_overlap_reads=5
JC	1416	.	1	928114	-1	1	960294	1	-72	alignment_overlap=-72	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=1.291e-01	junction_possible_overlap_registers=142	key=1__928114__-1__1__960294__1__-72__CCCCCCCCCTCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAA__251__251__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=20	max_min_left_minus=20	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=286	max_right=159	max_right_minus=159	max_right_plus=0	neg_log10_pos_hash_p_value=5.8	new_junction_coverage=0.05	new_junction_read_count=3	polymorphism_frequency=1.291e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CCCCCCCCCTCAGGGCTGCGCCCAGCTCCCCCTGTGAACGAGGGGAGCCAAGTTTTTTTTCTTTTTATATAA
JC	1417	.	1	960294	1	1	960282	-1	0	alignment_overlap=13	coverage_minus=23	coverage_plus=28	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=201	key=1__960294__1__1__960295__-1__13____251__251__0__0	max_left=236	max_left_minus=221	max_left_plus=236	max_min_left=116	max_min_left_minus=116	max_min_left_plus=104	max_min_right=65	max_min_right_minus=65	max_min_right_plus=65	max_pos_hash_score=404	max_right=220	max_right_minus=220	max_right_plus=220	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.63	new_junction_read_count=52	polymorphism_frequency=9.640e-01	pos_hash_score=40	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=51
JC	1418	.	1	1038238	-1	1	1038364	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.082e-02	junction_possible_overlap_registers=207	key=1__1038238__-1__1__1038371__-1__7____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=117	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=110	max_min_right_minus=110	max_min_right_plus=0	max_pos_hash_score=416	max_right=126	max_right_minus=110	max_right_plus=126	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.082e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=55	side_2_redundant=0	total_non_overlap_reads=3
JC	1419	.	1	1049852	-1	1	1050100	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.427e-02	junction_possible_overlap_registers=206	key=1__1049852__-1__1__1050108__-1__8____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=41	max_min_left=50	max_min_left_minus=50	max_min_left_plus=41	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=414	max_right=201	max_right_minus=129	max_right_plus=201	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.427e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=4
JC	1420	.	1	1162597	-1	1	1162601	-1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.295e-02	junction_possible_overlap_registers=201	key=1__1162597__-1__1__1162614__-1__13____251__251__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=114	max_min_right_minus=114	max_min_right_plus=0	max_pos_hash_score=404	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.295e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=3
JC	1421	.	1	1180190	-1	1	1180540	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.350e-02	junction_possible_overlap_registers=208	key=1__1180190__-1__1__1180546__-1__6____251__251__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=418	max_right=239	max_right_minus=0	max_right_plus=239	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.350e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	1422	.	1	1188248	1	1	1188542	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.281e-02	junction_possible_overlap_registers=205	key=1__1188248__1__1__1188533__1__9____251__251__0__0	max_left=174	max_left_minus=174	max_left_plus=110	max_min_left=96	max_min_left_minus=18	max_min_left_plus=96	max_min_right=67	max_min_right_minus=67	max_min_right_plus=44	max_pos_hash_score=412	max_right=146	max_right_minus=108	max_right_plus=146	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.281e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	1423	.	1	1246328	-1	1	1246580	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.282e-02	junction_possible_overlap_registers=210	key=1__1246328__-1__1__1246584__-1__4____251__251__0__0	max_left=241	max_left_minus=241	max_left_plus=96	max_min_left=97	max_min_left_minus=97	max_min_left_plus=96	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=422	max_right=163	max_right_minus=149	max_right_plus=163	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.282e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=4	side_1_possible_overlap_registers=214	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=5
JC	1424	.	1	1248990	1	1	1249377	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.748e-02	junction_possible_overlap_registers=205	key=1__1248990__1__1__1249368__1__9____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=165	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=110	max_min_right_minus=110	max_min_right_plus=86	max_pos_hash_score=412	max_right=110	max_right_minus=110	max_right_plus=86	neg_log10_pos_hash_p_value=6.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.748e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=6
JC	1425	.	1	1277119	1	1	1277811	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.005e-02	junction_possible_overlap_registers=207	key=1__1277119__1__1__1277804__1__7____251__251__0__0	max_left=156	max_left_minus=156	max_left_plus=70	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=416	max_right=195	max_right_minus=88	max_right_plus=195	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	1426	.	1	1289283	-1	1	1289419	1	0	alignment_overlap=33	coverage_minus=37	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=181	key=1__1289283__-1__1__1289386__1__33____251__251__0__0	max_left=198	max_left_minus=198	max_left_plus=197	max_min_left=106	max_min_left_minus=96	max_min_left_plus=106	max_min_right=104	max_min_right_minus=104	max_min_right_plus=104	max_pos_hash_score=364	max_right=216	max_right_minus=216	max_right_plus=206	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=72	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=33	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=181	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=72
JC	1427	.	1	1295581	1	1	1295827	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.238e-02	junction_possible_overlap_registers=203	key=1__1295581__1__1__1295816__1__11____251__251__0__0	max_left=170	max_left_minus=170	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=69	max_min_right_plus=83	max_pos_hash_score=408	max_right=83	max_right_minus=69	max_right_plus=83	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.05	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	1428	.	1	1301789	1	1	1301916	1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=5.864e-02	junction_possible_overlap_registers=209	key=1__1301789__1__1__1301911__1__5____251__251__0__0	max_left=119	max_left_minus=119	max_left_plus=0	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=420	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.864e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	1429	.	1	1301793	-1	1	1301910	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.754e-02	junction_possible_overlap_registers=209	key=1__1301793__-1__1__1301915__-1__5____251__251__0__0	max_left=164	max_left_minus=124	max_left_plus=164	max_min_left=63	max_min_left_minus=58	max_min_left_plus=63	max_min_right=119	max_min_right_minus=119	max_min_right_plus=119	max_pos_hash_score=420	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=5.754e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=94	side_2_redundant=0	total_non_overlap_reads=6
JC	1430	.	1	1337384	1	1	1337378	-1	0	alignment_overlap=28	coverage_minus=18	coverage_plus=35	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=186	key=1__1337384__1__1__1337406__-1__28____251__251__0__0	max_left=221	max_left_minus=186	max_left_plus=221	max_min_left=109	max_min_left_minus=54	max_min_left_plus=109	max_min_right=102	max_min_right_minus=77	max_min_right_plus=102	max_pos_hash_score=374	max_right=217	max_right_minus=213	max_right_plus=217	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.70	new_junction_read_count=53	polymorphism_frequency=9.498e-01	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=28	side_1_possible_overlap_registers=214	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=186	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=53
JC	1431	.	1	1356830	-1	1	1356880	-1	0	alignment_overlap=22	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.327e-02	junction_possible_overlap_registers=192	key=1__1356830__-1__1__1356902__-1__22____251__251__0__0	max_left=177	max_left_minus=157	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=51	max_min_right_minus=45	max_min_right_plus=51	max_pos_hash_score=386	max_right=51	max_right_minus=45	max_right_plus=51	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.327e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=22	side_1_possible_overlap_registers=214	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=4
JC	1432	.	1	1402658	-1	1	1402930	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.759e-02	junction_possible_overlap_registers=206	key=1__1402658__-1__1__1402938__-1__8____251__251__0__1	max_left=127	max_left_minus=28	max_left_plus=127	max_min_left=28	max_min_left_minus=28	max_min_left_plus=0	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=414	max_right=134	max_right_minus=134	max_right_plus=79	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.759e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.58	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	1433	.	1	1420795	1	1	1420789	-1	0	alignment_overlap=27	coverage_minus=14	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=187	key=1__1420795__1__1__1420816__-1__27____251__251__0__0	max_left=218	max_left_minus=218	max_left_plus=198	max_min_left=108	max_min_left_minus=103	max_min_left_plus=108	max_min_right=107	max_min_right_minus=107	max_min_right_plus=66	max_pos_hash_score=376	max_right=217	max_right_minus=217	max_right_plus=179	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.47	new_junction_read_count=36	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=27	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=187	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=36
JC	1434	.	1	1423227	1	1	1423440	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.067e-02	junction_possible_overlap_registers=208	key=1__1423227__1__1__1423434__1__6____251__251__0__0	max_left=102	max_left_minus=102	max_left_plus=64	max_min_left=102	max_min_left_minus=102	max_min_left_plus=64	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=418	max_right=187	max_right_minus=143	max_right_plus=187	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.067e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=57	side_2_redundant=0	total_non_overlap_reads=3
JC	1435	.	1	1429378	-1	1	1429570	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.534e-02	junction_possible_overlap_registers=205	key=1__1429378__-1__1__1429579__-1__9____251__251__0__0	max_left=168	max_left_minus=57	max_left_plus=168	max_min_left=74	max_min_left_minus=57	max_min_left_plus=74	max_min_right=30	max_min_right_minus=0	max_min_right_plus=30	max_pos_hash_score=412	max_right=185	max_right_minus=185	max_right_plus=138	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.534e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=4
JC	1436	.	1	1469986	-1	1	1470586	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.025e-02	junction_possible_overlap_registers=204	key=1__1469986__-1__1__1470596__-1__10____251__251__0__0	max_left=226	max_left_minus=146	max_left_plus=226	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=14	max_pos_hash_score=410	max_right=148	max_right_minus=148	max_right_plus=14	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=3
JC	1437	.	1	1471848	1	1	1472106	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.276e-02	junction_possible_overlap_registers=205	key=1__1471848__1__1__1472097__1__9____251__251__0__0	max_left=213	max_left_minus=47	max_left_plus=213	max_min_left=99	max_min_left_minus=47	max_min_left_plus=99	max_min_right=29	max_min_right_minus=0	max_min_right_plus=29	max_pos_hash_score=412	max_right=161	max_right_minus=161	max_right_plus=143	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.276e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=64	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=3
JC	1438	.	1	1542358	1	1	1542344	-1	0	alignment_overlap=31	coverage_minus=24	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=183	key=1__1542358__1__1__1542375__-1__31____251__251__0__0	max_left=218	max_left_minus=217	max_left_plus=218	max_min_left=106	max_min_left_minus=106	max_min_left_plus=93	max_min_right=110	max_min_right_minus=107	max_min_right_plus=110	max_pos_hash_score=368	max_right=207	max_right_minus=207	max_right_plus=178	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.89	new_junction_read_count=67	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=31	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=183	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=67
JC	1439	.	1	1550944	-1	1	1551553	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.517e-02	junction_possible_overlap_registers=208	key=1__1550944__-1__1__1551559__-1__6____251__251__0__0	max_left=222	max_left_minus=222	max_left_plus=144	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=100	max_min_right_minus=23	max_min_right_plus=100	max_pos_hash_score=418	max_right=127	max_right_minus=23	max_right_plus=127	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=3
JC	1440	.	1	1559810	-1	1	1560318	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=6.695e-02	junction_possible_overlap_registers=204	key=1__1559810__-1__1__1560328__-1__10____251__251__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=410	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.695e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=5
JC	1441	.	1	1588109	1	1	1588225	1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.569e-02	junction_possible_overlap_registers=209	key=1__1588109__1__1__1588220__1__5____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=108	max_min_left=95	max_min_left_minus=95	max_min_left_plus=0	max_min_right=95	max_min_right_minus=6	max_min_right_plus=95	max_pos_hash_score=420	max_right=151	max_right_minus=151	max_right_plus=95	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.569e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=4
JC	1442	.	1	1615108	1	1	1615351	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.842e-02	junction_possible_overlap_registers=205	key=1__1615108__1__1__1615342__1__9____251__251__0__0	max_left=200	max_left_minus=127	max_left_plus=200	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=115	max_min_right_minus=115	max_min_right_plus=41	max_pos_hash_score=412	max_right=172	max_right_minus=115	max_right_plus=172	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.842e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=9	side_1_possible_overlap_registers=214	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	1443	.	1	1645323	1	1	1645592	-1	0	alignment_overlap=2	coverage_minus=8	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=2.471e-01	junction_possible_overlap_registers=212	key=1__1645323__1__1__1645594__-1__2____251__251__0__0	max_left=239	max_left_minus=230	max_left_plus=239	max_min_left=43	max_min_left_minus=0	max_min_left_plus=43	max_min_right=81	max_min_right_minus=72	max_min_right_plus=81	max_pos_hash_score=426	max_right=85	max_right_minus=72	max_right_plus=85	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.30	new_junction_read_count=26	polymorphism_frequency=2.471e-01	pos_hash_score=21	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=23
JC	1444	.	1	1645329	1	1	1645598	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=3.949e-01	junction_possible_overlap_registers=212	key=1__1645329__1__1__1645600__-1__2____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=234	max_min_left=116	max_min_left_minus=114	max_min_left_plus=116	max_min_right=123	max_min_right_minus=123	max_min_right_plus=121	max_pos_hash_score=426	max_right=242	max_right_minus=242	max_right_plus=211	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.61	new_junction_read_count=53	polymorphism_frequency=3.949e-01	pos_hash_score=39	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=2	side_1_possible_overlap_registers=214	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=49
JC	1445	.	1	1676127	-1	1	1677059	-1	0	alignment_overlap=7	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.980e-02	junction_possible_overlap_registers=207	key=1__1676127__-1__1__1677066__-1__7____251__251__0__0	max_left=108	max_left_minus=56	max_left_plus=108	max_min_left=108	max_min_left_minus=56	max_min_left_plus=108	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=416	max_right=187	max_right_minus=187	max_right_plus=136	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.980e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=7	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	1446	.	1	1677317	1	1	1677440	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.059e-02	junction_possible_overlap_registers=203	key=1__1677317__1__1__1677429__1__11____251__251__0__0	max_left=103	max_left_minus=103	max_left_plus=41	max_min_left=103	max_min_left_minus=103	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=408	max_right=194	max_right_minus=136	max_right_plus=194	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=11	side_1_possible_overlap_registers=214	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=203	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	1447	.	1	1703915	1	1	1703926	-1	0	alignment_overlap=14	coverage_minus=171	coverage_plus=121	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=200	key=1__1703901__1__1__1703926__-1__14____251__251__1__0	max_left=233	max_left_minus=231	max_left_plus=233	max_min_left=117	max_min_left_minus=117	max_min_left_plus=108	max_min_right=112	max_min_right_minus=112	max_min_right_plus=112	max_pos_hash_score=402	max_right=234	max_right_minus=234	max_right_plus=231	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=3.58	new_junction_read_count=293	polymorphism_frequency=8.577e-01	pos_hash_score=118	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=14	side_2_possible_overlap_registers=214	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=292
JC	1448	.	1	1806866	1	1	1807214	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.250e-02	junction_possible_overlap_registers=202	key=1__1806866__1__1__1807202__1__12____251__251__0__0	max_left=228	max_left_minus=0	max_left_plus=228	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_pos_hash_score=406	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	1449	.	1	1812418	1	1	1812424	-1	-6	alignment_overlap=-6	coverage_minus=48	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=208	key=1__1812418__1__1__1812424__-1__-6__GCCCGC__251__251__0__1	max_left=238	max_left_minus=238	max_left_plus=217	max_min_left=122	max_min_left_minus=122	max_min_left_plus=110	max_min_right=109	max_min_right_minus=109	max_min_right_plus=104	max_pos_hash_score=418	max_right=244	max_right_minus=244	max_right_plus=239	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=71	polymorphism_frequency=9.481e-01	pos_hash_score=55	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=71	unique_read_sequence=GCCCGC
JC	1450	.	1	1829795	-1	1	1829965	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.056e-02	junction_possible_overlap_registers=208	key=1__1829795__-1__1__1829971__-1__6____251__251__0__0	max_left=188	max_left_minus=148	max_left_plus=188	max_min_left=108	max_min_left_minus=0	max_min_left_plus=108	max_min_right=97	max_min_right_minus=97	max_min_right_plus=23	max_pos_hash_score=418	max_right=138	max_right_minus=97	max_right_plus=138	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.056e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	1451	.	1	1829828	-1	1	1829935	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=6.025e-02	junction_possible_overlap_registers=204	key=1__1829828__-1__1__1829945__-1__10____251__251__0__0	max_left=133	max_left_minus=101	max_left_plus=133	max_min_left=101	max_min_left_minus=101	max_min_left_plus=68	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=410	max_right=108	max_right_minus=108	max_right_plus=108	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.025e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=59	side_2_redundant=0	total_non_overlap_reads=4
JC	1452	.	1	1853228	-1	1	1853406	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.504e-02	junction_possible_overlap_registers=208	key=1__1853228__-1__1__1853412__-1__6____251__251__0__0	max_left=198	max_left_minus=84	max_left_plus=198	max_min_left=84	max_min_left_minus=84	max_min_left_plus=74	max_min_right=47	max_min_right_minus=0	max_min_right_plus=47	max_pos_hash_score=418	max_right=179	max_right_minus=160	max_right_plus=179	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.504e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.49	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	1453	.	1	1856530	-1	1	1856901	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.938e-02	junction_possible_overlap_registers=204	key=1__1856530__-1__1__1856911__-1__10____251__251__0__0	max_left=165	max_left_minus=165	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=410	max_right=208	max_right_minus=75	max_right_plus=208	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.938e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.18	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=3
JC	1454	.	1	1866451	-1	1	1866556	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=4.818e-02	junction_possible_overlap_registers=204	key=1__1866451__-1__1__1866566__-1__10____251__251__0__0	max_left=164	max_left_minus=0	max_left_plus=164	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=105	max_min_right_minus=0	max_min_right_plus=105	max_pos_hash_score=410	max_right=105	max_right_minus=0	max_right_plus=105	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.818e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=4
JC	1455	.	1	1870993	1	1	1872121	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.005e-02	junction_possible_overlap_registers=204	key=1__1870993__1__1__1872111__1__10____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=150	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=410	max_right=164	max_right_minus=46	max_right_plus=164	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.005e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=214	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=204	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=3
JC	1456	.	1	1903155	1	1	1903122	-1	0	alignment_overlap=48	coverage_minus=25	coverage_plus=36	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=166	key=1__1903155__1__1__1903170__-1__48____251__251__0__0	max_left=199	max_left_minus=190	max_left_plus=199	max_min_left=101	max_min_left_minus=72	max_min_left_plus=101	max_min_right=89	max_min_right_minus=89	max_min_right_plus=83	max_pos_hash_score=334	max_right=195	max_right_minus=195	max_right_plus=172	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.90	new_junction_read_count=61	polymorphism_frequency=9.857e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=48	side_1_possible_overlap_registers=214	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=166	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=61
JC	1457	.	1	1924135	1	1	1924303	1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.471e-02	junction_possible_overlap_registers=209	key=1__1924135__1__1__1924298__1__5____251__251__0__0	max_left=118	max_left_minus=59	max_left_plus=118	max_min_left=59	max_min_left_minus=59	max_min_left_plus=59	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=420	max_right=187	max_right_minus=187	max_right_plus=107	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.471e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.22	side_1_overlap=5	side_1_possible_overlap_registers=214	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.38	side_2_overlap=0	side_2_possible_overlap_registers=209	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4
JC	1458	.	1	1942196	1	1	1942371	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.896e-02	junction_possible_overlap_registers=202	key=1__1942196__1__1__1942359__1__12____251__251__0__0	max_left=117	max_left_minus=117	max_left_plus=87	max_min_left=117	max_min_left_minus=117	max_min_left_plus=87	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=406	max_right=152	max_right_minus=146	max_right_plus=152	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=3.896e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=12	side_1_possible_overlap_registers=214	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	1459	.	1	1971730	1	1	1971884	1	0	alignment_overlap=13	coverage_minus=5	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=9.445e-02	junction_possible_overlap_registers=201	key=1__1971730__1__1__1971871__1__13____251__251__0__0	max_left=82	max_left_minus=43	max_left_plus=82	max_min_left=82	max_min_left_minus=43	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=404	max_right=209	max_right_minus=209	max_right_plus=160	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.09	new_junction_read_count=7	polymorphism_frequency=9.445e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=13	side_1_possible_overlap_registers=214	side_1_read_count=62	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	1460	.	1	2050894	-1	1	2051014	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=5.909e-02	junction_possible_overlap_registers=206	key=1__2050894__-1__1__2051022__-1__8____251__251__0__0	max_left=187	max_left_minus=165	max_left_plus=187	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=113	max_min_right_minus=54	max_min_right_plus=113	max_pos_hash_score=414	max_right=113	max_right_minus=54	max_right_plus=113	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=5.909e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=8	side_1_possible_overlap_registers=214	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=206	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=4
JC	1461	.	1	2066573	-1	1	2066574	1	-5	alignment_overlap=-5	coverage_minus=39	coverage_plus=37	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2066573__-1__1__2066574__1__-5__AGTCC__251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=220	max_min_left=106	max_min_left_minus=106	max_min_left_plus=95	max_min_right=119	max_min_right_minus=119	max_min_right_plus=102	max_pos_hash_score=420	max_right=242	max_right_minus=242	max_right_plus=196	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.89	new_junction_read_count=76	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=214	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=76	unique_read_sequence=AGTCC
JC	1462	.	1	2081906	-1	1	2081907	1	-5	alignment_overlap=-5	coverage_minus=53	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=209	key=1__2081906__-1__1__2081907__1__-5__CGCCC__251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=219	max_min_left=122	max_min_left_minus=111	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=111	max_pos_hash_score=400	max_right=243	max_right_minus=243	max_right_plus=216	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=103	polymorphism_frequency=9.904e-01	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=10	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=204	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=105	unique_read_sequence=CGCCC
JC	1463	.	1	2124272	-1	1	2125072	-1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=5.174e-02	junction_possible_overlap_registers=208	key=1__2124272__-1__1__2125078__-1__6____251__251__0__0	max_left=138	max_left_minus=115	max_left_plus=138	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=107	max_min_right_minus=107	max_min_right_plus=107	max_pos_hash_score=418	max_right=107	max_right_minus=107	max_right_plus=107	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=5.174e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=6	side_1_possible_overlap_registers=214	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=208	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
UN	1464	.	1	5371	6092
UN	1465	.	1	27206	27209
UN	1466	.	1	79042	79055
UN	1467	.	1	230928	231150
UN	1468	.	1	262934	268299
UN	1469	.	1	275641	275854
UN	1470	.	1	285134	285294
UN	1471	.	1	377172	377871
UN	1472	.	1	472816	473546
UN	1473	.	1	550629	552530
UN	1474	.	1	589960	589960
UN	1475	.	1	589963	590724
UN	1476	.	1	696469	701934
UN	1477	.	1	704291	704532
UN	1478	.	1	713344	714036
UN	1479	.	1	820779	821551
UN	1480	.	1	960283	960293
UN	1481	.	1	1009151	1009177
UN	1482	.	1	1009191	1009191
UN	1483	.	1	1009194	1009194
UN	1484	.	1	1009196	1009196
UN	1485	.	1	1009208	1009208
UN	1486	.	1	1009244	1009266
UN	1487	.	1	1044267	1044275
UN	1488	.	1	1044277	1044277
UN	1489	.	1	1044279	1044279
UN	1490	.	1	1044285	1044285
UN	1491	.	1	1044288	1044288
UN	1492	.	1	1044294	1044294
UN	1493	.	1	1044297	1044297
UN	1494	.	1	1082720	1088028
UN	1495	.	1	1088030	1088030
UN	1496	.	1	1109925	1109954
UN	1497	.	1	1289284	1289418
UN	1498	.	1	1337379	1337383
UN	1499	.	1	1420790	1420794
UN	1500	.	1	1442797	1443144
UN	1501	.	1	1480204	1480261
UN	1502	.	1	1542345	1542357
UN	1503	.	1	1606308	1611525
UN	1504	.	1	1633498	1633512
UN	1505	.	1	1639472	1639474
UN	1506	.	1	1639476	1639476
UN	1507	.	1	1639479	1640292
UN	1508	.	1	1640298	1640298
UN	1509	.	1	1645429	1645429
UN	1510	.	1	1704070	1708960
UN	1511	.	1	1729692	1729692
UN	1512	.	1	1773347	1773437
UN	1513	.	1	1812403	1812403
UN	1514	.	1	1812405	1812407
UN	1515	.	1	1812412	1812417
UN	1516	.	1	1874446	1874502
UN	1517	.	1	1874569	1874569
UN	1518	.	1	1874571	1874571
UN	1519	.	1	1874577	1874577
UN	1520	.	1	1874580	1874580
UN	1521	.	1	1874582	1874583
UN	1522	.	1	1875993	1875996
UN	1523	.	1	1876008	1876008
UN	1524	.	1	1876566	1876594
UN	1525	.	1	1876596	1876596
UN	1526	.	1	1876599	1876599
UN	1527	.	1	1877478	1877676
UN	1528	.	1	1877678	1877836
UN	1529	.	1	1880042	1880043
UN	1530	.	1	1880052	1880062
UN	1531	.	1	1903123	1903154
UN	1532	.	1	2032085	2032085
UN	1533	.	1	2032089	2032090