| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,756,123 | T→G | L184F (TTA→TTC) | unknown ← | Outer membrane protein A precursor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,756,123 | 0 | T | G | 98.6% | 233.5 / NA | 70 | L184F (TTA→TTC) | unknown | Outer membrane protein A precursor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (28/41); minor base A (0/1); total (28/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAATGCCATCCAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCTAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAAGAGACAAGCTGGAAC > 1/1755890‑1756355 | gAAATGCCATCCAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGc < 1:744250/250‑1 (MQ=255) cAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGAt < 1:270071/251‑1 (MQ=255) cAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGAt < 1:235012/251‑1 (MQ=255) cAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGAt < 1:637982/251‑1 (MQ=255) cAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGAt < 1:664457/251‑1 (MQ=255) gTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATAc > 1:885127/1‑249 (MQ=255) ttttttGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCAAAATTGCCTACTCGGCTCACCCATTGATACTc < 1:115452/250‑1 (MQ=255) cgcCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGt < 1:270442/250‑1 (MQ=255) cgcCTGCGGTTTTAAATTCGCTGTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTGCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGGCTACTCGGCTCACCCATTGATACTCCAAACGt < 1:262911/250‑1 (MQ=255) cTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATg > 1:275262/1‑251 (MQ=255) cTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATg < 1:35332/251‑1 (MQ=255) gttgAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGAt > 1:114776/1‑215 (MQ=255) gttgAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCat > 1:164423/1‑251 (MQ=255) aaTTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGATATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATAc < 1:352438/250‑1 (MQ=255) aaTTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATAcc < 1:295715/251‑1 (MQ=255) gAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATAc < 1:530126/184‑1 (MQ=255) aCTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTaa > 1:508293/1‑251 (MQ=255) tttGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAAt < 1:791418/251‑1 (MQ=255) tttGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAAt < 1:332239/251‑1 (MQ=255) ttGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTc < 1:99987/215‑1 (MQ=255) gTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGga > 1:195496/1‑199 (MQ=255) gTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTc < 1:423077/213‑1 (MQ=255) gTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCAt > 1:530625/1‑251 (MQ=255) aaCTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCAccc < 1:238964/164‑1 (MQ=255) aaCTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGa > 1:725184/1‑251 (MQ=255) ctactTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAAt > 1:50388/1‑251 (MQ=255) actTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGccccc < 1:669214/214‑1 (MQ=255) ctTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATgg > 1:809499/1‑198 (MQ=255) gCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCAt < 1:324904/153‑1 (MQ=255) gCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGttt > 1:245328/1‑250 (MQ=255) aaTAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTtct > 1:68830/1‑250 (MQ=255) aaCAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGa > 1:847905/1‑251 (MQ=255) gTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTAt > 1:189407/1‑249 (MQ=255) gTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTAt > 1:563604/1‑249 (MQ=255) gTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTAt > 1:227025/1‑249 (MQ=255) gTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATc < 1:180175/250‑1 (MQ=255) gCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAaca > 1:886978/1‑250 (MQ=255) aaGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGt < 1:131746/134‑1 (MQ=255) aaGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATc > 1:190984/1‑232 (MQ=255) aaGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGAtt > 1:79414/1‑251 (MQ=255) gATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATa < 1:835425/178‑1 (MQ=255) aTAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAAt < 1:464087/251‑1 (MQ=255) aTAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAAt < 1:890119/251‑1 (MQ=255) aaaCCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAAtgc < 1:897994/251‑1 (MQ=255) aaaCCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAAtg > 1:380029/1‑250 (MQ=255) aCCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTc > 1:382545/1‑120 (MQ=255) aCCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAAtg > 1:645079/1‑248 (MQ=255) aCCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGAAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAg < 1:769667/218‑1 (MQ=255) aCGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAg > 1:648893/1‑196 (MQ=255) aCGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACg > 1:378170/1‑251 (MQ=255) ccAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATa > 1:340885/1‑251 (MQ=255) atatCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAg < 1:464569/251‑1 (MQ=255) atatCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAg < 1:506399/251‑1 (MQ=255) atCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGctgcacc < 1:624812/234‑1 (MQ=255) gaATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAAt > 1:665859/1‑250 (MQ=255) aCATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATAc < 1:726272/251‑1 (MQ=255) aCATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATAc < 1:13385/251‑1 (MQ=255) aCATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATAc < 1:133279/251‑1 (MQ=255) aTTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGAt < 1:699083/249‑1 (MQ=255) ttCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGc < 1:245256/238‑1 (MQ=255) cGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAgctt < 1:514151/251‑1 (MQ=255) ataataATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAagag < 1:772895/251‑1 (MQ=255) ataataATTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAagag < 1:133055/251‑1 (MQ=255) ataatTGGCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGAt < 1:881644/233‑1 (MQ=255) ggCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGa < 1:26490/205‑1 (MQ=255) ggCTTTTCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAAGAGACAAGCTgg > 1:373674/1‑251 (MQ=255) ttttCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAAGAGACAAGCTGGAAc < 1:25650/251‑1 (MQ=255) ttttCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAAGAGACAAGCTGGAAc < 1:699789/251‑1 (MQ=255) ttttCTTTCTGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAAGAGACAAGCTGGAAc < 1:406322/251‑1 (MQ=255) tctttctGCTTTGCCGAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAAt > 1:619306/1‑206 (MQ=255) | GAAATGCCATCCAAAGTTTTTTGCGCCTGCGGTTTTAAATTCGCTTTGTTGAACGCAAAAGTCACATCAGAATTCAAATTGAATACTTTGTTAACTACTTCAGGAGCAATAACAGGCGCCGGTCCCTGACCAAAGCGGTAAGATAAACCTAGCGCTACGGAACCAATATCCGGAGAATAGCGAACATCAGATTCGTTATTTTCATAATAATTGGCTTTTCTTTCTGCTTTGCCTAAATTGCCTACTCGGCTCACCCATTGATACTCCAAACGTAATGCCAATTCAGGAAGAATGGCATATTCAAGCCCCCCGGCAAATACCGGAGAAACTTTTAAATCATGGAATTTATGAGTTTCTCCGAAAGTGTTATCTTTGTAATCAACACGGATTAATGCTGCACCTGCACGTGCATAAAGATCTAAATTATGCAATACAGGATAGCTTGCTTTAAGAGACAAGCTGGAAC > 1/1755890‑1756355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |