| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,165,044 | G→T | V227V (GTG→GTT) | unknown → | Multidrug efflux transporter MdtK/NorM (MATE family) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,165,044 | 0 | G | T | 100.0% | 277.1 / NA | 78 | V227V (GTG→GTT) | unknown | Multidrug efflux transporter MdtK/NorM (MATE family) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (41/37); total (41/37) | |||||||||||
ATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTGTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGT > 1/1164812‑1165274 | aTTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGaa < 1:685837/251‑1 (MQ=255)aTTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGaa < 1:375180/251‑1 (MQ=255) gttTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAAt > 1:47134/1‑251 (MQ=255) aCGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgcacg > 1:391110/1‑251 (MQ=255) cGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgcacgc < 1:645691/251‑1 (MQ=255) gCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgcacg > 1:113577/1‑248 (MQ=255) aaCTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTg > 1:395344/1‑250 (MQ=255) gATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCa > 1:291954/1‑251 (MQ=255) aCCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGc < 1:461352/251‑1 (MQ=255) ccTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTg > 1:163974/1‑249 (MQ=255) gCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTtg > 1:371/1‑251 (MQ=255) ttGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGc > 1:320600/1‑239 (MQ=255) gATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAGATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCtgtg > 1:423713/1‑251 (MQ=255) gATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTg > 1:190999/1‑179 (MQ=255) tCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGaa > 1:74295/1‑251 (MQ=255) atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTg < 1:598748/174‑1 (MQ=255) atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAg < 1:688606/187‑1 (MQ=255) atatTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGacgca < 1:608080/192‑1 (MQ=255) ccTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCg > 1:266794/1‑231 (MQ=255) ccTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGc < 1:200338/237‑1 (MQ=255) ctTAATTATATTTTTATTTCCGGCAAATGTGGTTTGCCGGCTTTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTTTCTGTTGATGTTGGCATCCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAg < 1:238474/241‑1 (MQ=255) tAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCt < 1:355430/220‑1 (MQ=255) tttaCGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTa < 1:326364/251‑1 (MQ=255) aCGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc < 1:746887/251‑1 (MQ=255) cGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTAtt > 1:860582/1‑249 (MQ=255) gCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTa > 1:893695/1‑251 (MQ=255) gCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGT‑ATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc < 1:409825/247‑1 (MQ=255) aaaTTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCttt < 1:370043/242‑1 (MQ=255) aaTTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCg > 1:848353/1‑251 (MQ=255) gggTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCtt > 1:638441/1‑251 (MQ=255) gtgCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATgg < 1:98041/193‑1 (MQ=255) gtgCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTggg > 1:378727/1‑251 (MQ=255) tgCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGgc < 1:149423/251‑1 (MQ=255) ccGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGc < 1:262973/196‑1 (MQ=255) ggCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATgg > 1:355346/1‑172 (MQ=255) gCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAg > 1:527707/1‑189 (MQ=255) ggCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCATATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAAt > 1:288691/1‑251 (MQ=255) ggCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTggg > 1:309605/1‑224 (MQ=255) cGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAAt < 1:140124/251‑1 (MQ=255) aTTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGa < 1:596270/164‑1 (MQ=255) aTTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCgg < 1:883458/251‑1 (MQ=255) tAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTc < 1:799672/250‑1 (MQ=255) gggTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCt > 1:285075/1‑137 (MQ=255) gggTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCg > 1:92201/1‑143 (MQ=255) gTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTAt < 1:97828/250‑1 (MQ=255) gATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTa > 1:490572/1‑251 (MQ=255) tgtgTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATg < 1:636237/251‑1 (MQ=255) cTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGTGTTGTGCTGTGAAGTAGCATTGTTCGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGc > 1:648681/1‑250 (MQ=255) cTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGc > 1:489722/1‑250 (MQ=255) gTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTa > 1:718372/1‑251 (MQ=255) gTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTa > 1:669520/1‑251 (MQ=255) aTGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtc < 1:3069/251‑1 (MQ=255) tGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATAc > 1:712860/1‑220 (MQ=255) gTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAAcc > 1:854741/1‑157 (MQ=255) gTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtct > 1:709561/1‑250 (MQ=255) gTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtct > 1:406082/1‑250 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTccc < 1:834314/108‑1 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCt > 1:639422/1‑150 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCa > 1:585232/1‑193 (MQ=255) ggCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATg < 1:11524/235‑1 (MQ=255) cATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGc < 1:677921/251‑1 (MQ=255) cATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATAGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCgg < 1:474731/250‑1 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGc < 1:339860/109‑1 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCt > 1:537091/1‑167 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTAt < 1:352775/225‑1 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGtc > 1:45276/1‑241 (MQ=255) aCTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCAt < 1:749096/250‑1 (MQ=255) cTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTAt < 1:167458/155‑1 (MQ=255) cTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTc < 1:765596/157‑1 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAAt > 1:641250/1‑62 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCAt > 1:141198/1‑132 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGc < 1:727937/184‑1 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCa > 1:206304/1‑251 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCa > 1:101833/1‑251 (MQ=255) gTATGCGGGCGAAAAATCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCa > 1:347526/1‑251 (MQ=255) aaaTCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGc < 1:753099/106‑1 (MQ=255) aaTCAACGTGATTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTtggt < 1:201923/251‑1 (MQ=255) aTTTGAAGGTTTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCgg < 1:1624/187‑1 (MQ=255) | ATTTTCGTTGTTTAAATGACGGCATCGCGAAAACTAAACCAGCGATGGTGATCACCTTTCTCGGCTTGCTGATCAATATTCCTCTTAATTATATTTTTATTTACGGCAAATTGGGTGTGCCGGCATTCGGCGCCGTGGGCTGTGGCATTGCCACGGCAATTGTAAACTGGGTGATGTGTCTGTTGATGTTGGCATACTGTATGCGGGCGAAAAATCAACGTGATTTGAAGGTGTTCGCAAATATCATTGAACGCCCGAATAGACGCACGCTGGGGAAATTGCTGAAGCTGGGTTTCCCCATTGCTATGGCGTTGTGCTGTGAAGTAGCATTGTTTGCGCTAACCTCTTTATTCTTATCGCCTTTGGGCGCCGACGTGGTGGCAAGTCATCAAATTGCACTAAATACCGGTTCTTTTGTATTTATGTTGCCTATGTCTCTCGGCATGGCAACGACCATTTTGGT > 1/1164812‑1165274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |