| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,857,240 | T→G | S459A (TCC→GCC) | unknown → | Efflux ABC transporter for glutathione/L‑cysteine, essential for assembly of bd‑type respiratory oxidases => CydD subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,857,240 | 0 | T | G | 100.0% | 273.2 / NA | 77 | S459A (TCC→GCC) | unknown | Efflux ABC transporter for glutathione/L‑cysteine, essential for assembly of bd‑type respiratory oxidases => CydD subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (38/39); total (38/39) | |||||||||||
CAGCCATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTACCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATTCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGATCACTC > 1/1856996‑1857486 | caGCCATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGC‑AAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTgcg > 1:703674/1‑251 (MQ=255) gCCATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTgcg > 1:553671/1‑250 (MQ=255) gCCATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTgcg > 1:836838/1‑250 (MQ=255) gCCATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTgcg > 1:774255/1‑250 (MQ=255) ccATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTgcgc < 1:499434/250‑1 (MQ=255) atatTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTg > 1:179339/1‑251 (MQ=255) tGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGcac < 1:434016/251‑1 (MQ=255) ccATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACaa > 1:41987/1‑251 (MQ=255) cAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGt < 1:11886/250‑1 (MQ=255) cGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAGACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCg < 1:587371/251‑1 (MQ=255) cGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTAc < 1:269662/249‑1 (MQ=255) cGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTAc < 1:577510/249‑1 (MQ=255) aaCTTCGCTCATCAACGCCATGTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTc < 1:569568/251‑1 (MQ=255) gTTAGGTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAaagaag > 1:859809/1‑251 (MQ=255) gTTTTCTGCCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAaaga < 1:145526/244‑1 (MQ=255) gccGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATA‑TGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGgtgt > 1:478100/2‑251 (MQ=255) tATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGttt > 1:511242/1‑250 (MQ=255) tATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGttt > 1:101117/1‑250 (MQ=255) tATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGGAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAaag < 1:433519/232‑1 (MQ=255) cAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAGAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGt < 1:524776/251‑1 (MQ=255) cAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTgggg < 1:63400/250‑1 (MQ=255) aaaTTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGaa > 1:212696/1‑203 (MQ=255) gACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGc < 1:560551/250‑1 (MQ=255) gACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCa > 1:133874/1‑251 (MQ=255) aTTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCa > 1:628958/1‑248 (MQ=255) tttGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCActgc < 1:73666/251‑1 (MQ=255) ggATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCActgctg > 1:535827/1‑250 (MQ=255) gATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAg < 1:846043/175‑1 (MQ=255) aTTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGcac < 1:758714/251‑1 (MQ=255) aTTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGcac < 1:12180/251‑1 (MQ=255) ttAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATGAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACaa < 1:553209/251‑1 (MQ=255) aaTGCAATGGCGTAAACATATTGCCTGGGTAGGGC‑AAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAgg < 1:862130/251‑1 (MQ=255) ggCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTg > 1:88643/1‑251 (MQ=255) aaCATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCg < 1:310958/138‑1 (MQ=255) aaCATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCActgc > 1:506625/1‑228 (MQ=255) aaCATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCtgttg < 1:769441/251‑1 (MQ=255) cATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGt < 1:500601/130‑1 (MQ=255) cATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGACGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGc > 1:439805/1‑244 (MQ=255) tGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGc > 1:779114/1‑137 (MQ=255) tGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCAc < 1:35637/218‑1 (MQ=255) gCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACaa < 1:616885/227‑1 (MQ=255) gggTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCActgc > 1:111100/1‑216 (MQ=255) gggTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAAc > 1:437208/1‑249 (MQ=255) gggTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAAc > 1:686735/1‑249 (MQ=255) gggCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCActgc < 1:14527/211‑1 (MQ=255) gCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGcc < 1:689783/250‑1 (MQ=255) cGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGAt < 1:465339/251‑1 (MQ=255) ctgctACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCCACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCa > 1:433532/1‑251 (MQ=255) gctACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAAt > 1:319634/1‑251 (MQ=255) gctACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGAACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAAt > 1:803229/1‑251 (MQ=255) ctACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAAt > 1:111555/1‑250 (MQ=255) ctACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAAt > 1:224649/1‑250 (MQ=255) ctACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAAt > 1:20479/1‑250 (MQ=255) cACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGTACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATc < 1:2042/251‑1 (MQ=255) ccATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAg > 1:476021/1‑251 (MQ=255) aTTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAg < 1:203206/99‑1 (MQ=255) aTTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATg > 1:811494/1‑222 (MQ=255) aTTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCAc > 1:263090/1‑164 (MQ=255) tGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGcaa < 1:305018/251‑1 (MQ=255) gTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGc < 1:663749/203‑1 (MQ=255) gTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAgg > 1:801379/1‑228 (MQ=255) gTGATATTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAAtt > 1:756187/1‑251 (MQ=255) tatTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGt > 1:844415/1‑250 (MQ=255) atTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCAc > 1:355636/1‑151 (MQ=255) atTCAAGCCGACGAACAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGcaacaa > 1:591729/1‑243 (MQ=255) aaCAGGAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCAc < 1:776890/250‑1 (MQ=255) gAAATTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTaa < 1:711522/250‑1 (MQ=255) aaaTTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACG‑ACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGa < 1:62574/251‑1 (MQ=255) aaTTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGa < 1:20030/251‑1 (MQ=255) aaTTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGa < 1:557789/251‑1 (MQ=255) aaTTGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGa < 1:178712/251‑1 (MQ=255) ttGATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGAtc < 1:534284/251‑1 (MQ=255) gATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACaa < 1:392232/137‑1 (MQ=255) gATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGAtca > 1:838487/1‑250 (MQ=255) gATCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGAtca > 1:448073/1‑250 (MQ=255) aTCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGAtca > 1:604186/1‑249 (MQ=255) tCATGCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGAtcactc < 1:173910/251‑1 (MQ=255) | CAGCCATATTGCCATCGTCGGGCAAAGCGGTGCCGGCAAAACTTCGCTCATCAACGCCATGTTAGGTTTTCTACCGTATCAAGGCAGCCTGAAAATTAACGGACAAGAATTGCGCGATTTGGATTTAATGCAATGGCGTAAACATATTGCCTGGGTAGGGCAAAACCCGCTGCTGCTACAAGGCACCATTAAAGAAAATTTATTGCTGGGTGATATTCAAGCCGACGAACAGGAAATTGATCATTCCTTGCGCTTGGCACAAGCAAAAGAGTTTACCGATCGGCTTGGTCTGGAAGCAGAAATTAAAGAAGGCGGCATCGGTGTTTCCGTGGGGCAGGCGCAACGTTTGGCAGTGGCACGTGCACTGCTGCACAAAGGTGATTTGCTGTTGTTGGACGAACCTACCGCCAGCCTGGATGCCCAATCGGAAAATCAGGTGTTGCAGGCATTGCAACAAATTAGTCAACAGCAAACCACGGTAATGATCACTC > 1/1856996‑1857486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |