mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.38.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | Xen36_6 | 138,952 | (T)5→4 | coding (578/1293 nt) | Xen36_01725 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | Xen36_9 | 1 | 18 | 18 | NA [0] | [23] 214 | –/salA | –/Iron‑sulfur cluster carrier protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen36_1 | 1 = | 0 (0.000) | 158 (1.050) | 72/270 | 0.5 | 100% | intergenic (–/‑105) | –/nth_1 | –/Endonuclease III |
| ? | Xen36_14 | = 47747 | 0 (0.000) | intergenic (+232/–) | argS/– | Arginine‑‑tRNA ligase/– | |||||
| * | ? | Xen36_1 | = 162609 | 118 (0.780) | 100 (0.760) +TGTAAGCTGACTTTCCGC |
52/262 | 1.5 | 49.1% | intergenic (+378/‑450) | trxB/Xen36_00155 | Thioredoxin reductase/Nucleotide‑binding protein |
| ? | Xen36_1 | 169199 = | 118 (0.780) | intergenic (+216/+230) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein | |||||
| * | ? | Xen36_1 | = 162706 | 75 (0.500) | 82 (0.530) +TGACTAGAGTTGAAA |
42/268 | 2.6 | 70.9% | intergenic (+475/‑353) | trxB/Xen36_00155 | Thioredoxin reductase/Nucleotide‑binding protein |
| ? | Xen36_9 | = 124450 | 0 (0.000) | intergenic (‑272/–) | auaG/– | Aurachin C monooxygenase/isomerase/– | |||||
| * | ? | Xen36_1 | 169165 = | 127 (0.840) | 38 (0.400) +54 bp |
27/190 | 2.8 | 32.8% | intergenic (+182/+264) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein |
| ? | Xen36_1 | = 169278 | 118 (0.780) | intergenic (+295/+151) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein | |||||
| * | ? | Xen36_1 | = 169278 | 118 (0.780) | 37 (0.400) +53 bp |
27/192 | 2.8 | 33.8% | intergenic (+295/+151) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein |
| ? | Xen36_2 | = 226887 | 108 (0.780) | intergenic (+197/‑276) | lepA/hemW | Elongation factor 4/Heme chaperone HemW | |||||
| * | ? | Xen36_1 | 648761 = | 91 (0.600) | 64 (0.500) +C |
34/296 | 2.9 | 58.6% | intergenic (+687/–) | Xen36_00617/– | hypothetical protein/– |
| ? | Xen36_33 | 1 = | 0 (0.000) | intergenic (–/+70) | –/Xen36_02617 | –/hypothetical protein | |||||
| * | ? | Xen36_10 | 1 = | 0 (0.000) | 207 (0.780) | 75/174 | 0.0 | 100% | intergenic (–/+133) | –/Xen36_02112 | –/tRNA‑Gly(tcc) |
| ? | Xen36_28 | = 1613 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen36_11 | 74667 = | NA (NA) | 194 (0.990) | 75/260 | 1.5 | NA | intergenic (‑24/–) | copZ/– | Copper chaperone CopZ/– |
| ? | Xen36_13 | = 127 | NA (NA) | intergenic (–/+327) | –/copA | –/Copper‑exporting P‑type ATPase | |||||
| * | ? | Xen36_12 | 1 = | 0 (0.000) | 164 (1.120) | 61/226 | 1.2 | 100% | intergenic (–/+620) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| ? | Xen36_15 | 37 = | 0 (0.000) | intergenic (–/+596) | –/lysS | –/Lysine‑‑tRNA ligase | |||||
| * | ? | Xen36_12 | 42 = | 80 (0.420) | 93 (0.660) | 48/224 | 2.5 | 41.8% | intergenic (–/+579) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| ? | Xen36_12 | = 299 | 199 (1.400) | intergenic (–/+322) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR | |||||
| * | ? | Xen36_12 | = 77 | NA (NA) | 103 (0.740) +44 bp |
46/210 | 2.3 | 41.6% | intergenic (–/+544) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| ? | Xen36_3 | 250715 = | 206 (0.980) | intergenic (+685/–) | recR/– | Recombination protein RecR/– | |||||
| * | ? | Xen36_12 | = 78 | NA (NA) | 84 (0.540) +ATGACAAATCGG |
45/274 | 2.7 | 100% | intergenic (–/+543) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| ? | Xen36_16 | 1 = | 0 (0.000) | intergenic (–/‑1) | –/Xen36_02455 | –/tRNA‑Val(tac) | |||||
| * | ? | Xen36_12 | = 79 | NA (NA) | 158 (0.970) +21 bp |
67/256 | 1.4 | 45.1% | intergenic (–/+542) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| ? | Xen36_12 | 80 = | 224 (1.190) | intergenic (–/+541) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR | |||||
| * | ? | Xen36_16 | 1 = | 0 (0.000) | 77 (0.530) +CCAATATA |
46/282 | 2.7 | 72.4% | intergenic (–/‑1) | –/Xen36_02455 | –/tRNA‑Val(tac) |
| ? | Xen36_16 | = 35410 | 62 (0.410) | noncoding (74/74 nt) | Xen36_02516 | tRNA‑Glu(ttc) | |||||
| * | ? | Xen36_16 | = 244 | 97 (0.640) | 91 (0.900) +33 bp |
52/232 | 1.1 | 70.7% | noncoding (73/76 nt) | Xen36_02457 | tRNA‑Lys(ttt) |
| ? | Xen36_34 | = 443 | 0 (0.000) | noncoding (1/75 nt) | Xen36_02623 | tRNA‑Gly(gcc) | |||||
| * | ? | Xen36_19 | 1 = | 0 (0.000) | 929 (0.930) | 170/188 | 0.2 | 100% | intergenic (–/‑211) | –/Xen36_02569 | –/hypothetical protein |
| ? | Xen36_19 | = 8034 | 0 (0.000) | intergenic (+503/–) | Xen36_02580/– | hypothetical protein/– | |||||
| * | ? | Xen36_2 | = 401342 | 0 (0.000) | 91 (1.180) | 45/178 | 0.2 | 100% | intergenic (+29920/–) | norB_1/– | Quinolone resistance protein NorB/– |
| ? | Xen36_8 | 61 = | 0 (0.000) | intergenic (–/‑27) | –/ebhA | –/Extracellular matrix‑binding protein EbhA | |||||
| * | ? | Xen36_21 | 1 = | 0 (0.000) | 123 (0.520) | 51/174 | 0.2 | 100% | intergenic (–/‑94) | –/Xen36_02588 | –/hypothetical protein |
| ? | Xen36_31 | = 1147 | 0 (0.000) | coding (749/807 nt) | Xen36_02616 | IS3 family transposase IS655 | |||||
| * | ? | Xen36_23 | 1 = | 0 (0.000) | 428 (0.730) | 106/192 | 0.9 | 100% | intergenic (–/+1574) | –/Xen36_02602 | –/hypothetical protein |
| ? | Xen36_30 | = 1165 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen36_23 | = 223 | 619 (1.110) | 271 (0.380) | 101/234 | 3.0 | 35.7% | intergenic (–/+1352) | –/Xen36_02602 | –/hypothetical protein |
| ? | Xen36_30 | 1065 = | 492 (0.500) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen36_27 | 1 = | 0 (0.000) | 436 (0.540) +C |
185/296 | 1.7 | 100% | intergenic (–/–) | –/– | –/– |
| ? | Xen36_32 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen36_27 | 1 = | 0 (0.000) | 463 (0.580) +T |
181/296 | 2.1 | 100% | intergenic (–/–) | –/– | –/– |
| ? | Xen36_32 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | Xen36_28 | = 1675 | 0 (0.000) | 190 (0.470) | 94/262 | 0.2 | 100% | intergenic (–/–) | –/– | –/– |
| ? | Xen36_9 | 19 = | 0 (0.000) | intergenic (–/+409) | –/salA | –/Iron‑sulfur cluster carrier protein | |||||
| * | ? | Xen36_31 | = 1209 | 0 (0.000) | 187 (0.730) | 88/172 | 0.0 | 100% | intergenic (+4/–) | Xen36_02616/– | IS3 family transposase IS655/– |
| ? | Xen36_5 | 64 = | 0 (0.000) | intergenic (–/‑128) | –/Xen36_01412 | –/hypothetical protein | |||||
| * | ? | Xen36_34 | 1 = | 0 (0.000) | 92 (0.750) +CCATTTATTTTTACACGAT |
60/260 | 1.4 | 63.6% | noncoding (74/74 nt) | Xen36_02619 | tRNA‑Ala(tgc) |
| ? | Xen36_6 | = 134 | 121 (0.690) | intergenic (–/+640) | –/perR | –/Peroxide‑responsive repressor PerR | |||||