#=GENOME_DIFF	1.0
#=CREATED	23:11:19 30 Oct 2024
#=PROGRAM	breseq 0.38.1 
#=COMMAND	breseq -j 32 -r /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen36.gff /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0006_good_1.fq.gz -o /scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/breseq/Xen36_7/
#=REFSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/assembly/prokka/Xen36.gff
#=READSEQ	/scratch/hb-JMvDijl/2024_10_Germany-NL-UMCG/fastq/Unknown_CH607-002R0006_good_1.fq.gz
#=CONVERTED-BASES	566535833
#=CONVERTED-READS	3786198
#=INPUT-BASES	566538524
#=INPUT-READS	3786216
#=MAPPED-BASES	535892360
#=MAPPED-READS	3582461
DEL	1	106	Xen36_6	138952	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
RA	2	.	Xen36_1	128479	0	G	C	bias_e_value=4.06396e-08	bias_p_value=1.46874e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.1	fisher_strand_p_value=4.02972e-16	frequency=2.867e-01	ks_quality_p_value=1	major_base=G	major_cov=72/35	major_frequency=7.133e-01	minor_base=C	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=2.867e-01	polymorphism_score=56.1	prediction=polymorphism	ref_cov=72/35	total_cov=72/105
RA	3	.	Xen36_1	142769	0	G	C	bias_e_value=6.79347e-22	bias_p_value=2.4552e-28	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.6	fisher_strand_p_value=3.56832e-30	frequency=3.369e-01	ks_quality_p_value=1	major_base=G	major_cov=100/24	major_frequency=6.631e-01	minor_base=C	minor_cov=0/63	new_cov=0/63	polymorphism_frequency=3.369e-01	polymorphism_score=90.5	prediction=polymorphism	ref_cov=100/24	total_cov=100/105
RA	4	.	Xen36_1	142770	0	T	C	bias_e_value=8.50327e-14	bias_p_value=3.07313e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.1	fisher_strand_p_value=6.16627e-22	frequency=2.767e-01	ks_quality_p_value=1	major_base=T	major_cov=101/48	major_frequency=7.233e-01	minor_base=C	minor_cov=0/57	new_cov=0/57	polymorphism_frequency=2.767e-01	polymorphism_score=58.7	prediction=polymorphism	ref_cov=101/48	total_cov=101/105
RA	5	.	Xen36_1	162509	0	A	T	bias_e_value=1374550	bias_p_value=0.496772	consensus_reject=FREQUENCY_CUTOFF	consensus_score=417.5	fisher_strand_p_value=0.870963	frequency=2.367e-01	ks_quality_p_value=0.212139	major_base=A	major_cov=70/88	major_frequency=7.633e-01	minor_base=T	minor_cov=21/28	new_cov=21/28	polymorphism_frequency=2.367e-01	polymorphism_score=126.1	prediction=polymorphism	ref_cov=70/88	total_cov=101/140
RA	6	.	Xen36_1	162515	0	A	.	bias_e_value=513326	bias_p_value=0.185519	consensus_reject=FREQUENCY_CUTOFF	consensus_score=547.3	fisher_strand_p_value=0.872866	frequency=2.033e-01	ks_quality_p_value=0.051913	major_base=A	major_cov=80/112	major_frequency=7.967e-01	minor_base=.	minor_cov=21/28	new_cov=21/28	polymorphism_frequency=2.033e-01	polymorphism_score=152.5	prediction=polymorphism	ref_cov=80/112	total_cov=101/140
RA	7	.	Xen36_1	162536	0	T	G	bias_e_value=2528450	bias_p_value=0.913798	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.9	fisher_strand_p_value=0.634466	frequency=3.893e-01	ks_quality_p_value=0.968755	major_base=T	major_cov=78/104	major_frequency=6.107e-01	minor_base=G	minor_cov=53/63	new_cov=53/63	polymorphism_frequency=3.893e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=78/104	total_cov=131/167
RA	8	.	Xen36_1	162558	0	T	A	bias_e_value=2763860	bias_p_value=0.998875	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.9	fisher_strand_p_value=1	frequency=3.239e-01	ks_quality_p_value=0.952935	major_base=T	major_cov=97/118	major_frequency=6.761e-01	minor_base=A	minor_cov=46/57	new_cov=46/57	polymorphism_frequency=3.239e-01	polymorphism_score=287.7	prediction=polymorphism	ref_cov=97/118	total_cov=143/175
RA	9	.	Xen36_1	162610	0	C	T	bias_e_value=473772	bias_p_value=0.171224	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.6	fisher_strand_p_value=0.108248	frequency=3.162e-01	ks_quality_p_value=0.376627	major_base=C	major_cov=37/43	major_frequency=6.838e-01	minor_base=T	minor_cov=11/26	new_cov=11/26	polymorphism_frequency=3.162e-01	polymorphism_score=71.5	prediction=polymorphism	ref_cov=37/43	total_cov=48/69
RA	10	.	Xen36_1	162624	0	A	C	bias_e_value=429427	bias_p_value=0.155198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.3	fisher_strand_p_value=0.157391	frequency=3.109e-01	ks_quality_p_value=0.227822	major_base=A	major_cov=37/45	major_frequency=6.891e-01	minor_base=C	minor_cov=11/26	new_cov=11/26	polymorphism_frequency=3.109e-01	polymorphism_score=113.3	prediction=polymorphism	ref_cov=37/45	total_cov=48/71
RA	11	.	Xen36_1	162627	0	T	C	bias_e_value=187658	bias_p_value=0.0678206	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.3	fisher_strand_p_value=0.0440056	frequency=2.869e-01	ks_quality_p_value=0.286885	major_base=T	major_cov=43/44	major_frequency=7.131e-01	minor_base=C	minor_cov=10/25	new_cov=10/25	polymorphism_frequency=2.869e-01	polymorphism_score=67.2	prediction=polymorphism	ref_cov=43/44	total_cov=53/69
RA	12	.	Xen36_1	162636	0	G	A	bias_e_value=286522	bias_p_value=0.103551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.1	fisher_strand_p_value=0.106689	frequency=2.315e-01	ks_quality_p_value=0.200293	major_base=G	major_cov=40/43	major_frequency=7.685e-01	minor_base=A	minor_cov=7/18	new_cov=7/18	polymorphism_frequency=2.315e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=40/43	total_cov=47/61
RA	13	.	Xen36_1	162639	0	C	T	bias_e_value=883308	bias_p_value=0.319233	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.8	fisher_strand_p_value=0.240148	frequency=2.222e-01	ks_quality_p_value=0.396677	major_base=C	major_cov=38/46	major_frequency=7.778e-01	minor_base=T	minor_cov=7/17	new_cov=7/17	polymorphism_frequency=2.222e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=38/46	total_cov=45/63
RA	14	.	Xen36_1	183909	0	T	C	bias_e_value=1.5011e-14	bias_p_value=5.42506e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.5	fisher_strand_p_value=1.05123e-22	frequency=3.143e-01	ks_quality_p_value=1	major_base=T	major_cov=79/17	major_frequency=6.857e-01	minor_base=C	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=3.143e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=79/17	total_cov=79/61
RA	15	.	Xen36_1	183910	0	G	C	bias_e_value=1.40216e-07	bias_p_value=5.06748e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.2	fisher_strand_p_value=1.4407e-15	frequency=2.266e-01	ks_quality_p_value=1	major_base=G	major_cov=78/21	major_frequency=7.734e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.266e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=78/21	total_cov=78/62
RA	16	.	Xen36_1	191106	0	T	C	bias_e_value=1063820	bias_p_value=0.384471	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.4	fisher_strand_p_value=0.305802	frequency=2.655e-01	ks_quality_p_value=0.40804	major_base=T	major_cov=52/78	major_frequency=7.345e-01	minor_base=C	minor_cov=23/24	new_cov=23/24	polymorphism_frequency=2.655e-01	polymorphism_score=87.1	prediction=polymorphism	ref_cov=52/78	total_cov=75/102
RA	17	.	Xen36_1	191112	0	C	T	bias_e_value=430685	bias_p_value=0.155652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.4	fisher_strand_p_value=0.444589	frequency=2.308e-01	ks_quality_p_value=0.0809598	major_base=C	major_cov=50/70	major_frequency=7.692e-01	minor_base=T	minor_cov=18/18	new_cov=18/18	polymorphism_frequency=2.308e-01	polymorphism_score=64.3	prediction=polymorphism	ref_cov=50/70	total_cov=68/88
RA	18	.	Xen36_1	191118	0	C	T	bias_e_value=2453350	bias_p_value=0.886655	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.6	fisher_strand_p_value=0.563392	frequency=2.244e-01	ks_quality_p_value=1	major_base=C	major_cov=51/70	major_frequency=7.756e-01	minor_base=T	minor_cov=17/18	new_cov=17/18	polymorphism_frequency=2.244e-01	polymorphism_score=59.8	prediction=polymorphism	ref_cov=51/70	total_cov=68/88
RA	19	.	Xen36_1	230325	0	G	A	bias_e_value=1.18857	bias_p_value=4.29556e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.1	fisher_strand_p_value=2.31159e-08	frequency=2.066e-01	ks_quality_p_value=1	major_base=G	major_cov=55/41	major_frequency=7.934e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.066e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=55/41	total_cov=55/72
RA	20	.	Xen36_1	256537	0	C	T	bias_e_value=470219	bias_p_value=0.16994	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.2	fisher_strand_p_value=0.821033	frequency=2.967e-01	ks_quality_p_value=0.0491681	major_base=C	major_cov=31/33	major_frequency=7.033e-01	minor_base=T	minor_cov=14/13	new_cov=14/13	polymorphism_frequency=2.967e-01	polymorphism_score=51.4	prediction=polymorphism	ref_cov=31/33	total_cov=45/47
RA	21	.	Xen36_1	256539	0	A	G	bias_e_value=2766970	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.7	fisher_strand_p_value=1	frequency=3.146e-01	ks_quality_p_value=1	major_base=A	major_cov=31/30	major_frequency=6.854e-01	minor_base=G	minor_cov=14/14	new_cov=14/14	polymorphism_frequency=3.146e-01	polymorphism_score=51.0	prediction=polymorphism	ref_cov=31/30	total_cov=45/44
RA	22	.	Xen36_1	256544	0	T	C	bias_e_value=2721490	bias_p_value=0.983563	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.4	fisher_strand_p_value=0.824253	frequency=3.297e-01	ks_quality_p_value=1	major_base=T	major_cov=31/30	major_frequency=6.703e-01	minor_base=C	minor_cov=14/16	new_cov=14/16	polymorphism_frequency=3.297e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=31/30	total_cov=45/46
RA	23	.	Xen36_1	459245	0	T	G	bias_e_value=2.21636e-10	bias_p_value=8.01004e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=325.0	fisher_strand_p_value=1.91646e-18	frequency=2.132e-01	ks_quality_p_value=1	major_base=T	major_cov=91/16	major_frequency=7.868e-01	minor_base=G	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.132e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=91/16	total_cov=92/46
RA	24	.	Xen36_1	466867	0	T	C	bias_e_value=8651.12	bias_p_value=0.00312656	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.1	fisher_strand_p_value=0.000348921	frequency=2.018e-01	ks_quality_p_value=1	major_base=T	major_cov=31/56	major_frequency=7.982e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.018e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=31/56	total_cov=31/78
RA	25	.	Xen36_1	476351	0	T	C	bias_e_value=2.78459e-09	bias_p_value=1.00637e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.7	fisher_strand_p_value=2.56719e-17	frequency=3.304e-01	ks_quality_p_value=1	major_base=T	major_cov=59/16	major_frequency=6.696e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.304e-01	polymorphism_score=45.7	prediction=polymorphism	ref_cov=59/16	total_cov=59/53
RA	26	.	Xen36_11	30	0	T	C	bias_e_value=1956940	bias_p_value=0.707251	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.8	fisher_strand_p_value=0.653492	frequency=3.976e-01	ks_quality_p_value=0.520929	major_base=T	major_cov=29/21	major_frequency=6.024e-01	minor_base=C	minor_cov=17/16	new_cov=17/16	polymorphism_frequency=3.976e-01	polymorphism_score=65.4	prediction=polymorphism	ref_cov=29/21	total_cov=46/38
RA	27	.	Xen36_11	117	0	T	C	bias_e_value=2746570	bias_p_value=0.992625	consensus_reject=FREQUENCY_CUTOFF	consensus_score=311.2	fisher_strand_p_value=0.881037	frequency=2.818e-01	ks_quality_p_value=1	major_base=T	major_cov=84/74	major_frequency=7.182e-01	minor_base=C	minor_cov=34/28	new_cov=34/28	polymorphism_frequency=2.818e-01	polymorphism_score=115.4	prediction=polymorphism	ref_cov=84/74	total_cov=118/102
RA	28	.	Xen36_11	126	0	G	A	bias_e_value=2522020	bias_p_value=0.911472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.5	fisher_strand_p_value=1	frequency=2.844e-01	ks_quality_p_value=0.609901	major_base=G	major_cov=84/72	major_frequency=7.156e-01	minor_base=A	minor_cov=34/28	new_cov=34/28	polymorphism_frequency=2.844e-01	polymorphism_score=112.0	prediction=polymorphism	ref_cov=84/72	total_cov=118/102
RA	29	.	Xen36_11	141	0	G	C	bias_e_value=2528000	bias_p_value=0.913633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=573.8	fisher_strand_p_value=0.885642	frequency=2.214e-01	ks_quality_p_value=0.693626	major_base=G	major_cov=112/106	major_frequency=7.786e-01	minor_base=C	minor_cov=33/29	new_cov=33/29	polymorphism_frequency=2.214e-01	polymorphism_score=181.7	prediction=polymorphism	ref_cov=112/106	total_cov=147/135
RA	30	.	Xen36_11	153	0	C	T	bias_e_value=2487740	bias_p_value=0.899085	consensus_reject=FREQUENCY_CUTOFF	consensus_score=471.8	fisher_strand_p_value=0.6726	frequency=2.313e-01	ks_quality_p_value=0.870983	major_base=C	major_cov=109/107	major_frequency=7.687e-01	minor_base=T	minor_cov=35/30	new_cov=35/30	polymorphism_frequency=2.313e-01	polymorphism_score=116.9	prediction=polymorphism	ref_cov=109/107	total_cov=144/137
RA	31	.	Xen36_11	10567	0	A	G	bias_e_value=4.64317e-12	bias_p_value=1.67807e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.8	fisher_strand_p_value=3.66774e-20	frequency=2.033e-01	ks_quality_p_value=1	major_base=A	major_cov=31/114	major_frequency=7.967e-01	minor_base=G	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.033e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=31/114	total_cov=69/114
RA	32	.	Xen36_11	18206	0	G	C	bias_e_value=6.84511e-16	bias_p_value=2.47386e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=427.0	fisher_strand_p_value=4.51815e-24	frequency=2.153e-01	ks_quality_p_value=1	major_base=G	major_cov=129/35	major_frequency=7.847e-01	minor_base=C	minor_cov=0/45	new_cov=0/45	polymorphism_frequency=2.153e-01	polymorphism_score=49.6	prediction=polymorphism	ref_cov=129/35	total_cov=130/91
RA	33	.	Xen36_11	66551	0	A	G	bias_e_value=3.41992e-13	bias_p_value=1.23598e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=348.7	fisher_strand_p_value=2.55277e-21	frequency=2.120e-01	ks_quality_p_value=1	major_base=A	major_cov=47/124	major_frequency=7.880e-01	minor_base=G	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.120e-01	polymorphism_score=45.2	prediction=polymorphism	ref_cov=47/124	total_cov=93/125
RA	34	.	Xen36_12	115	0	T	C	bias_e_value=2637540	bias_p_value=0.953221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=426.9	fisher_strand_p_value=0.877417	frequency=3.929e-01	ks_quality_p_value=0.809371	major_base=T	major_cov=219/209	major_frequency=6.071e-01	minor_base=C	minor_cov=144/133	new_cov=144/133	polymorphism_frequency=3.929e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=219/209	total_cov=363/342
RA	35	.	Xen36_12	122	0	G	.	bias_e_value=2412350	bias_p_value=0.871838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1034.3	fisher_strand_p_value=0.572947	frequency=3.898e-01	ks_quality_p_value=0.939944	major_base=G	major_cov=203/193	major_frequency=6.102e-01	minor_base=.	minor_cov=136/117	new_cov=136/117	polymorphism_frequency=3.898e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=203/193	total_cov=342/315
RA	36	.	Xen36_12	123	0	T	.	bias_e_value=2703810	bias_p_value=0.977172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1170.5	fisher_strand_p_value=0.871434	frequency=3.833e-01	ks_quality_p_value=0.911233	major_base=T	major_cov=209/190	major_frequency=6.167e-01	minor_base=.	minor_cov=132/116	new_cov=132/116	polymorphism_frequency=3.833e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=209/190	total_cov=342/306
RA	37	.	Xen36_12	125	0	A	T	bias_e_value=2625180	bias_p_value=0.948757	consensus_reject=FREQUENCY_CUTOFF	consensus_score=452.0	fisher_strand_p_value=0.74308	frequency=3.981e-01	ks_quality_p_value=0.938589	major_base=A	major_cov=195/180	major_frequency=6.019e-01	minor_base=T	minor_cov=133/115	new_cov=133/115	polymorphism_frequency=3.981e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=195/180	total_cov=334/299
RA	38	.	Xen36_12	129	0	A	.	bias_e_value=2377340	bias_p_value=0.859186	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1114.3	fisher_strand_p_value=0.541488	frequency=3.345e-01	ks_quality_p_value=0.957903	major_base=A	major_cov=200/192	major_frequency=6.655e-01	minor_base=.	minor_cov=106/91	new_cov=106/91	polymorphism_frequency=3.345e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=200/192	total_cov=334/298
RA	39	.	Xen36_12	130	0	G	.	bias_e_value=2487220	bias_p_value=0.898896	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1096.9	fisher_strand_p_value=0.600487	frequency=3.300e-01	ks_quality_p_value=0.974992	major_base=G	major_cov=203/195	major_frequency=6.700e-01	minor_base=.	minor_cov=105/91	new_cov=105/91	polymorphism_frequency=3.300e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=203/195	total_cov=334/301
RA	40	.	Xen36_12	131	0	A	T	bias_e_value=1758430	bias_p_value=0.635508	consensus_reject=FREQUENCY_CUTOFF	consensus_score=827.9	fisher_strand_p_value=0.336374	frequency=7.077e-01	ks_quality_p_value=0.830254	major_base=T	major_cov=240/208	major_frequency=7.077e-01	minor_base=A	minor_cov=91/94	new_cov=240/208	polymorphism_frequency=7.077e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/94	total_cov=333/303
RA	41	.	Xen36_12	132	0	A	T	bias_e_value=1949990	bias_p_value=0.704737	consensus_reject=FREQUENCY_CUTOFF	consensus_score=823.1	fisher_strand_p_value=0.338097	frequency=7.055e-01	ks_quality_p_value=1	major_base=T	major_cov=240/208	major_frequency=7.055e-01	minor_base=A	minor_cov=92/95	new_cov=240/208	polymorphism_frequency=7.055e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=92/95	total_cov=333/303
RA	42	.	Xen36_12	185	0	G	A	bias_e_value=799005	bias_p_value=0.288765	consensus_reject=FREQUENCY_CUTOFF	consensus_score=794.9	fisher_strand_p_value=0.0826729	frequency=3.185e-01	ks_quality_p_value=1	major_base=G	major_cov=238/267	major_frequency=6.815e-01	minor_base=A	minor_cov=128/108	new_cov=128/108	polymorphism_frequency=3.185e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=238/267	total_cov=366/375
RA	43	.	Xen36_12	197	0	C	T	bias_e_value=2170230	bias_p_value=0.784332	consensus_reject=FREQUENCY_CUTOFF	consensus_score=812.0	fisher_strand_p_value=0.419979	frequency=3.061e-01	ks_quality_p_value=1	major_base=C	major_cov=235/266	major_frequency=6.939e-01	minor_base=T	minor_cov=111/110	new_cov=111/110	polymorphism_frequency=3.061e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=235/266	total_cov=346/376
RA	44	.	Xen36_12	227	0	T	C	bias_e_value=1959890	bias_p_value=0.708316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=548.0	fisher_strand_p_value=0.358988	frequency=3.449e-01	ks_quality_p_value=0.95104	major_base=T	major_cov=200/216	major_frequency=6.551e-01	minor_base=C	minor_cov=114/105	new_cov=114/105	polymorphism_frequency=3.449e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=200/216	total_cov=314/322
RA	45	.	Xen36_12	336	1	.	G	bias_e_value=866973	bias_p_value=0.313329	consensus_reject=FREQUENCY_CUTOFF	consensus_score=633.5	fisher_strand_p_value=0.632912	frequency=2.008e-01	ks_quality_p_value=0.146567	major_base=.	major_cov=91/104	major_frequency=7.992e-01	minor_base=G	minor_cov=25/24	new_cov=25/24	polymorphism_frequency=2.008e-01	polymorphism_score=261.5	prediction=polymorphism	ref_cov=91/104	total_cov=116/128
RA	46	.	Xen36_12	14837	0	G	A	bias_e_value=0.07876	bias_p_value=2.84643e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.8	fisher_strand_p_value=1.32764e-09	frequency=2.128e-01	ks_quality_p_value=1	major_base=G	major_cov=63/48	major_frequency=7.872e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.128e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=63/48	total_cov=63/87
RA	47	.	Xen36_12	52360	0	C	T	bias_e_value=2338890	bias_p_value=0.845288	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.7	fisher_strand_p_value=0.498151	frequency=3.956e-01	ks_quality_p_value=1	major_base=C	major_cov=66/70	major_frequency=6.044e-01	minor_base=T	minor_cov=39/50	new_cov=39/50	polymorphism_frequency=3.956e-01	polymorphism_score=186.4	prediction=polymorphism	ref_cov=66/70	total_cov=105/120
RA	48	.	Xen36_12	52372	0	C	T	bias_e_value=1872420	bias_p_value=0.676702	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.9	fisher_strand_p_value=0.872933	frequency=3.631e-01	ks_quality_p_value=0.358696	major_base=C	major_cov=49/58	major_frequency=6.369e-01	minor_base=T	minor_cov=29/32	new_cov=29/32	polymorphism_frequency=3.631e-01	polymorphism_score=123.5	prediction=polymorphism	ref_cov=49/58	total_cov=78/90
RA	49	.	Xen36_13	27141	0	G	C	bias_e_value=2.25182e-38	bias_p_value=8.13821e-45	consensus_reject=FREQUENCY_CUTOFF	consensus_score=338.9	fisher_strand_p_value=7.59201e-47	frequency=3.436e-01	ks_quality_p_value=1	major_base=G	major_cov=123/5	major_frequency=6.564e-01	minor_base=C	minor_cov=0/67	new_cov=0/67	polymorphism_frequency=3.436e-01	polymorphism_score=121.4	prediction=polymorphism	ref_cov=123/5	total_cov=123/97
RA	50	.	Xen36_13	27142	0	G	C	bias_e_value=8.60762e-46	bias_p_value=3.11084e-52	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.4	fisher_strand_p_value=2.50021e-54	frequency=3.952e-01	ks_quality_p_value=1	major_base=G	major_cov=123/4	major_frequency=6.048e-01	minor_base=C	minor_cov=0/83	new_cov=0/83	polymorphism_frequency=3.952e-01	polymorphism_score=172.5	prediction=polymorphism	ref_cov=123/4	total_cov=123/97
RA	51	.	Xen36_13	27143	0	G	C	bias_e_value=6.77145e-34	bias_p_value=2.44724e-40	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.8	fisher_strand_p_value=2.52864e-42	frequency=3.211e-01	ks_quality_p_value=1	major_base=G	major_cov=122/7	major_frequency=6.789e-01	minor_base=C	minor_cov=0/61	new_cov=0/61	polymorphism_frequency=3.211e-01	polymorphism_score=98.2	prediction=polymorphism	ref_cov=122/7	total_cov=123/97
RA	52	.	Xen36_13	38146	0	C	T	bias_e_value=5.32617e-07	bias_p_value=1.92491e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=387.5	fisher_strand_p_value=5.69513e-15	frequency=2.034e-01	ks_quality_p_value=1	major_base=C	major_cov=83/105	major_frequency=7.966e-01	minor_base=T	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=2.034e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=83/105	total_cov=135/105
RA	53	.	Xen36_13	50408	0	A	G	bias_e_value=2.26029e-08	bias_p_value=8.16882e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=2.20477e-16	frequency=3.061e-01	ks_quality_p_value=1	major_base=A	major_cov=11/57	major_frequency=6.939e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.061e-01	polymorphism_score=43.5	prediction=polymorphism	ref_cov=11/57	total_cov=41/57
RA	54	.	Xen36_14	47684	0	T	C	bias_e_value=2287600	bias_p_value=0.826751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.6	fisher_strand_p_value=0.472512	frequency=3.689e-01	ks_quality_p_value=1	major_base=T	major_cov=72/58	major_frequency=6.311e-01	minor_base=C	minor_cov=38/38	new_cov=38/38	polymorphism_frequency=3.689e-01	polymorphism_score=145.4	prediction=polymorphism	ref_cov=72/58	total_cov=112/97
RA	55	.	Xen36_14	47693	0	A	.	bias_e_value=2144920	bias_p_value=0.775185	consensus_reject=FREQUENCY_CUTOFF	consensus_score=401.8	fisher_strand_p_value=0.409585	frequency=2.475e-01	ks_quality_p_value=1	major_base=A	major_cov=82/67	major_frequency=7.525e-01	minor_base=.	minor_cov=23/26	new_cov=23/26	polymorphism_frequency=2.475e-01	polymorphism_score=155.2	prediction=polymorphism	ref_cov=82/67	total_cov=111/93
RA	56	.	Xen36_14	47698	1	.	A	bias_e_value=132306	bias_p_value=0.0478161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=333.4	fisher_strand_p_value=0.181712	frequency=2.398e-01	ks_quality_p_value=0.0453858	major_base=.	major_cov=84/65	major_frequency=7.602e-01	minor_base=A	minor_cov=21/26	new_cov=21/26	polymorphism_frequency=2.398e-01	polymorphism_score=220.6	prediction=polymorphism	ref_cov=84/65	total_cov=105/91
RA	57	.	Xen36_14	47755	0	C	T	bias_e_value=1390100	bias_p_value=0.502391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.8	fisher_strand_p_value=0.410984	frequency=3.600e-01	ks_quality_p_value=0.457708	major_base=C	major_cov=9/7	major_frequency=6.400e-01	minor_base=T	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=3.600e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=9/7	total_cov=12/13
RA	58	.	Xen36_16	90	0	T	A	bias_e_value=2662200	bias_p_value=0.962133	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.5	fisher_strand_p_value=0.737737	frequency=6.364e-01	ks_quality_p_value=1	major_base=A	major_cov=38/67	major_frequency=6.364e-01	minor_base=T	minor_cov=20/40	new_cov=38/67	polymorphism_frequency=6.364e-01	polymorphism_score=168.9	prediction=polymorphism	ref_cov=20/40	total_cov=58/107
RA	59	.	Xen36_16	167	1	.	C	bias_e_value=207183	bias_p_value=0.0748773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.6	fisher_strand_p_value=1	frequency=4.870e-01	ks_quality_p_value=0.0142619	major_base=.	major_cov=47/52	major_frequency=5.130e-01	minor_base=C	minor_cov=45/49	new_cov=45/49	polymorphism_frequency=4.870e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=47/52	total_cov=92/101
RA	60	.	Xen36_16	168	0	G	T	bias_e_value=2283230	bias_p_value=0.825171	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.8	fisher_strand_p_value=1	frequency=4.844e-01	ks_quality_p_value=0.470411	major_base=G	major_cov=47/52	major_frequency=5.156e-01	minor_base=T	minor_cov=45/48	new_cov=45/48	polymorphism_frequency=4.844e-01	polymorphism_score=284.4	prediction=polymorphism	ref_cov=47/52	total_cov=92/101
RA	61	.	Xen36_16	169	0	G	T	bias_e_value=2766970	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.8	fisher_strand_p_value=1	frequency=4.870e-01	ks_quality_p_value=1	major_base=G	major_cov=47/52	major_frequency=5.130e-01	minor_base=T	minor_cov=45/49	new_cov=45/49	polymorphism_frequency=4.870e-01	polymorphism_score=283.9	prediction=polymorphism	ref_cov=47/52	total_cov=92/101
RA	62	.	Xen36_16	170	0	A	T	bias_e_value=2766970	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=1	frequency=4.842e-01	ks_quality_p_value=1	major_base=A	major_cov=47/51	major_frequency=5.158e-01	minor_base=T	minor_cov=45/47	new_cov=45/47	polymorphism_frequency=4.842e-01	polymorphism_score=277.7	prediction=polymorphism	ref_cov=47/51	total_cov=92/100
RA	63	.	Xen36_16	171	0	A	T	bias_e_value=2766970	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.6	fisher_strand_p_value=1	frequency=4.921e-01	ks_quality_p_value=1	major_base=A	major_cov=47/50	major_frequency=5.079e-01	minor_base=T	minor_cov=45/49	new_cov=45/49	polymorphism_frequency=4.921e-01	polymorphism_score=283.3	prediction=polymorphism	ref_cov=47/50	total_cov=92/99
RA	64	.	Xen36_16	187	0	T	C	bias_e_value=2332000	bias_p_value=0.842798	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.498697	frequency=5.251e-01	ks_quality_p_value=0.991775	major_base=C	major_cov=58/57	major_frequency=5.251e-01	minor_base=T	minor_cov=47/57	new_cov=58/57	polymorphism_frequency=5.251e-01	polymorphism_score=232.6	prediction=polymorphism	ref_cov=47/57	total_cov=106/115
RA	65	.	Xen36_18	1161	0	C	T	bias_e_value=2.72648e-10	bias_p_value=9.85367e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.1	fisher_strand_p_value=2.36959e-18	frequency=2.378e-01	ks_quality_p_value=1	major_base=C	major_cov=22/87	major_frequency=7.622e-01	minor_base=T	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.378e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=22/87	total_cov=57/87
RA	66	.	Xen36_18	3935	0	A	C	bias_e_value=1.27526e-08	bias_p_value=4.60885e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.3	fisher_strand_p_value=1.22449e-16	frequency=4.356e-01	ks_quality_p_value=1	major_base=A	major_cov=14/43	major_frequency=5.644e-01	minor_base=C	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=4.356e-01	polymorphism_score=42.7	prediction=polymorphism	ref_cov=14/43	total_cov=60/43
RA	67	.	Xen36_18	3943	0	G	A	bias_e_value=0.000149768	bias_p_value=5.41271e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.4	fisher_strand_p_value=1.93512e-12	frequency=3.619e-01	ks_quality_p_value=1	major_base=G	major_cov=24/43	major_frequency=6.381e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.619e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=24/43	total_cov=62/43
RA	68	.	Xen36_18	13441	0	G	A	bias_e_value=0.173768	bias_p_value=6.28008e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.5	fisher_strand_p_value=3.04725e-09	frequency=2.424e-01	ks_quality_p_value=1	major_base=G	major_cov=49/26	major_frequency=7.576e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.424e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=49/26	total_cov=49/56
RA	69	.	Xen36_2	49865	0	G	C	bias_e_value=1.04692e-13	bias_p_value=3.78363e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.2	fisher_strand_p_value=7.62436e-22	frequency=2.333e-01	ks_quality_p_value=1	major_base=G	major_cov=86/6	major_frequency=7.667e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.333e-01	polymorphism_score=39.6	prediction=polymorphism	ref_cov=86/6	total_cov=86/43
RA	70	.	Xen36_2	98224	0	G	A	bias_e_value=1.67654e-06	bias_p_value=6.0591e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.7	fisher_strand_p_value=1.85766e-14	frequency=2.236e-01	ks_quality_p_value=1	major_base=G	major_cov=89/36	major_frequency=7.764e-01	minor_base=A	minor_cov=1/35	new_cov=1/35	polymorphism_frequency=2.236e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=89/36	total_cov=90/71
RA	71	.	Xen36_2	134242	0	C	G	bias_e_value=0.000389198	bias_p_value=1.40659e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.6	fisher_strand_p_value=5.21348e-12	frequency=2.394e-01	ks_quality_p_value=1	major_base=C	major_cov=41/67	major_frequency=7.606e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.394e-01	polymorphism_score=38.0	prediction=polymorphism	ref_cov=41/67	total_cov=91/67
RA	72	.	Xen36_2	137075	0	G	C	bias_e_value=2.44358e-08	bias_p_value=8.83126e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.3	fisher_strand_p_value=2.38872e-16	frequency=2.212e-01	ks_quality_p_value=1	major_base=G	major_cov=76/12	major_frequency=7.788e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.212e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=76/12	total_cov=76/60
RA	73	.	Xen36_2	361406	0	G	C	bias_e_value=0.000467435	bias_p_value=1.68934e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.9	fisher_strand_p_value=6.30596e-12	frequency=2.100e-01	ks_quality_p_value=1	major_base=G	major_cov=63/16	major_frequency=7.900e-01	minor_base=C	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.100e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=63/16	total_cov=63/54
RA	74	.	Xen36_2	385304	0	T	G	bias_e_value=6.95356e-06	bias_p_value=2.51306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.2	fisher_strand_p_value=8.06804e-14	frequency=2.979e-01	ks_quality_p_value=1	major_base=T	major_cov=52/14	major_frequency=7.021e-01	minor_base=G	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.979e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=52/14	total_cov=52/43
RA	75	.	Xen36_2	392650	0	T	G	bias_e_value=0.00467235	bias_p_value=1.68861e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.0	fisher_strand_p_value=6.92234e-11	frequency=2.136e-01	ks_quality_p_value=1	major_base=T	major_cov=60/21	major_frequency=7.864e-01	minor_base=G	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.136e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=60/21	total_cov=60/44
RA	76	.	Xen36_2	392654	0	T	G	bias_e_value=8.35779e-06	bias_p_value=3.02056e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.1	fisher_strand_p_value=9.75688e-14	frequency=2.222e-01	ks_quality_p_value=1	major_base=T	major_cov=68/16	major_frequency=7.778e-01	minor_base=G	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.222e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=68/16	total_cov=68/41
RA	77	.	Xen36_23	33	0	T	C	bias_e_value=990760	bias_p_value=0.358067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=994.7	fisher_strand_p_value=0.112398	frequency=2.115e-01	ks_quality_p_value=1	major_base=T	major_cov=236/245	major_frequency=7.885e-01	minor_base=C	minor_cov=74/55	new_cov=74/55	polymorphism_frequency=2.115e-01	polymorphism_score=231.3	prediction=polymorphism	ref_cov=236/245	total_cov=310/300
RA	78	.	Xen36_27	1310	0	C	T	bias_e_value=2761130	bias_p_value=0.99789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=462.3	fisher_strand_p_value=0.935739	frequency=3.811e-01	ks_quality_p_value=1	major_base=C	major_cov=220/186	major_frequency=6.189e-01	minor_base=T	minor_cov=134/116	new_cov=134/116	polymorphism_frequency=3.811e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=220/186	total_cov=354/302
RA	79	.	Xen36_28	219	0	G	A	bias_e_value=1807650	bias_p_value=0.653296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=1382.5	fisher_strand_p_value=0.2935	frequency=2.063e-01	ks_quality_p_value=1	major_base=G	major_cov=292/343	major_frequency=7.937e-01	minor_base=A	minor_cov=84/81	new_cov=84/81	polymorphism_frequency=2.063e-01	polymorphism_score=298.6	prediction=polymorphism	ref_cov=292/343	total_cov=376/424
RA	80	.	Xen36_3	72409	0	G	C	bias_e_value=3.95557e-30	bias_p_value=1.42957e-36	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.5	fisher_strand_p_value=1.62426e-38	frequency=2.798e-01	ks_quality_p_value=1	major_base=G	major_cov=118/3	major_frequency=7.202e-01	minor_base=C	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=2.798e-01	polymorphism_score=67.4	prediction=polymorphism	ref_cov=118/3	total_cov=118/54
RA	81	.	Xen36_3	73431	0	G	C	bias_e_value=9.25847e-18	bias_p_value=3.34607e-24	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.5	fisher_strand_p_value=5.65844e-26	frequency=3.406e-01	ks_quality_p_value=1	major_base=G	major_cov=79/12	major_frequency=6.594e-01	minor_base=C	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=3.406e-01	polymorphism_score=74.7	prediction=polymorphism	ref_cov=79/12	total_cov=79/71
RA	82	.	Xen36_3	84359	0	A	C	bias_e_value=3.97872e-13	bias_p_value=1.43793e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=421.0	fisher_strand_p_value=2.9794e-21	frequency=2.679e-01	ks_quality_p_value=1	major_base=A	major_cov=59/105	major_frequency=7.321e-01	minor_base=C	minor_cov=60/0	new_cov=60/0	polymorphism_frequency=2.679e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=59/105	total_cov=122/105
RA	83	.	Xen36_3	94242	0	T	C	bias_e_value=9.63429e-11	bias_p_value=3.48189e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.7	fisher_strand_p_value=8.16398e-19	frequency=2.990e-01	ks_quality_p_value=1	major_base=T	major_cov=85/58	major_frequency=7.010e-01	minor_base=C	minor_cov=0/61	new_cov=0/61	polymorphism_frequency=2.990e-01	polymorphism_score=62.8	prediction=polymorphism	ref_cov=85/58	total_cov=85/119
RA	84	.	Xen36_3	173023	0	A	C	bias_e_value=2.1894e-15	bias_p_value=7.91262e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=467.7	fisher_strand_p_value=1.47708e-23	frequency=2.368e-01	ks_quality_p_value=1	major_base=A	major_cov=50/124	major_frequency=7.632e-01	minor_base=C	minor_cov=54/0	new_cov=54/0	polymorphism_frequency=2.368e-01	polymorphism_score=31.8	prediction=polymorphism	ref_cov=50/124	total_cov=104/124
RA	85	.	Xen36_3	173034	0	A	C	bias_e_value=1.17255e-10	bias_p_value=4.23766e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=457.8	fisher_strand_p_value=9.98313e-19	frequency=2.146e-01	ks_quality_p_value=1	major_base=A	major_cov=50/111	major_frequency=7.854e-01	minor_base=C	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=2.146e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=50/111	total_cov=97/111
RA	86	.	Xen36_3	173040	0	A	C	bias_e_value=3.49852e-14	bias_p_value=1.26439e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=431.1	fisher_strand_p_value=2.4917e-22	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=45/111	major_frequency=7.500e-01	minor_base=C	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=2.500e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=45/111	total_cov=97/111
RA	87	.	Xen36_3	250723	0	G	A	bias_e_value=2764670	bias_p_value=0.999169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.2	fisher_strand_p_value=1	frequency=4.545e-01	ks_quality_p_value=0.95952	major_base=G	major_cov=81/117	major_frequency=5.455e-01	minor_base=A	minor_cov=67/98	new_cov=67/98	polymorphism_frequency=4.545e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=81/117	total_cov=148/215
RA	88	.	Xen36_3	250770	0	A	.	bias_e_value=2215660	bias_p_value=0.800751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=765.1	fisher_strand_p_value=0.484782	frequency=2.920e-01	ks_quality_p_value=0.906419	major_base=A	major_cov=113/144	major_frequency=7.080e-01	minor_base=.	minor_cov=42/64	new_cov=42/64	polymorphism_frequency=2.920e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=113/144	total_cov=156/208
RA	89	.	Xen36_3	250816	1	.	A	bias_e_value=115738	bias_p_value=0.0418283	consensus_reject=FREQUENCY_CUTOFF	consensus_score=405.3	fisher_strand_p_value=0.0325532	frequency=2.242e-01	ks_quality_p_value=0.215624	major_base=.	major_cov=75/98	major_frequency=7.758e-01	minor_base=A	minor_cov=13/37	new_cov=13/37	polymorphism_frequency=2.242e-01	polymorphism_score=233.7	prediction=polymorphism	ref_cov=75/98	total_cov=88/135
RA	90	.	Xen36_3	250821	1	.	A	bias_e_value=1999470	bias_p_value=0.72262	consensus_reject=FREQUENCY_CUTOFF	consensus_score=538.0	fisher_strand_p_value=0.734281	frequency=2.027e-01	ks_quality_p_value=0.483425	major_base=.	major_cov=69/108	major_frequency=7.973e-01	minor_base=A	minor_cov=19/26	new_cov=19/26	polymorphism_frequency=2.027e-01	polymorphism_score=208.2	prediction=polymorphism	ref_cov=69/108	total_cov=88/134
RA	91	.	Xen36_30	1111	0	C	T	bias_e_value=9442.32	bias_p_value=0.00341251	consensus_reject=FREQUENCY_CUTOFF	consensus_score=902.2	fisher_strand_p_value=0.0672717	frequency=3.580e-01	ks_quality_p_value=0.00572407	major_base=C	major_cov=366/389	major_frequency=6.420e-01	minor_base=T	minor_cov=180/241	new_cov=180/241	polymorphism_frequency=3.580e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=366/389	total_cov=546/631
RA	92	.	Xen36_32	943	0	C	T	bias_e_value=984249	bias_p_value=0.355713	consensus_reject=FREQUENCY_CUTOFF	consensus_score=686.5	fisher_strand_p_value=0.111325	frequency=2.704e-01	ks_quality_p_value=0.999981	major_base=C	major_cov=190/185	major_frequency=7.296e-01	minor_base=T	minor_cov=82/57	new_cov=82/57	polymorphism_frequency=2.704e-01	polymorphism_score=268.8	prediction=polymorphism	ref_cov=190/185	total_cov=272/242
RA	93	.	Xen36_4	57126	0	G	A	bias_e_value=6.04323e-09	bias_p_value=2.18406e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.1	fisher_strand_p_value=5.68679e-17	frequency=2.114e-01	ks_quality_p_value=1	major_base=G	major_cov=99/39	major_frequency=7.886e-01	minor_base=A	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.114e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=99/39	total_cov=99/90
RA	94	.	Xen36_4	57133	0	G	A	bias_e_value=8.27334e-14	bias_p_value=2.99003e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.9	fisher_strand_p_value=5.99617e-22	frequency=2.545e-01	ks_quality_p_value=1	major_base=G	major_cov=102/21	major_frequency=7.455e-01	minor_base=A	minor_cov=1/41	new_cov=1/41	polymorphism_frequency=2.545e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=102/21	total_cov=103/93
RA	95	.	Xen36_4	76337	0	G	A	bias_e_value=1.40204e-06	bias_p_value=5.06705e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.8	fisher_strand_p_value=1.54477e-14	frequency=2.171e-01	ks_quality_p_value=1	major_base=G	major_cov=88/49	major_frequency=7.829e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.171e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=88/49	total_cov=88/94
RA	96	.	Xen36_4	76340	0	T	C	bias_e_value=7.30319e-14	bias_p_value=2.63942e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.3	fisher_strand_p_value=5.27957e-22	frequency=2.902e-01	ks_quality_p_value=1	major_base=T	major_cov=95/42	major_frequency=7.098e-01	minor_base=C	minor_cov=0/56	new_cov=0/56	polymorphism_frequency=2.902e-01	polymorphism_score=62.0	prediction=polymorphism	ref_cov=95/42	total_cov=95/98
RA	97	.	Xen36_4	208530	0	C	T	bias_e_value=7.47043e-12	bias_p_value=2.69986e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.4	fisher_strand_p_value=5.96444e-20	frequency=2.234e-01	ks_quality_p_value=1	major_base=C	major_cov=38/108	major_frequency=7.766e-01	minor_base=T	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=2.234e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=38/108	total_cov=92/108
RA	98	.	Xen36_4	214478	0	C	T	bias_e_value=1.22454e-20	bias_p_value=4.42557e-27	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.2	fisher_strand_p_value=3.03978e-21	frequency=4.900e-01	ks_quality_p_value=2.21024e-08	major_base=C	major_cov=0/51	major_frequency=5.100e-01	minor_base=T	minor_cov=42/7	new_cov=42/7	polymorphism_frequency=4.900e-01	polymorphism_score=104.9	prediction=polymorphism	ref_cov=0/51	total_cov=42/58
RA	99	.	Xen36_4	214482	0	G	A	bias_e_value=164.94	bias_p_value=5.96102e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.4	fisher_strand_p_value=4.47635e-06	frequency=2.083e-01	ks_quality_p_value=1	major_base=G	major_cov=40/36	major_frequency=7.917e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.083e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=40/36	total_cov=40/58
RA	100	.	Xen36_5	1131	0	G	C	bias_e_value=1.96083e-18	bias_p_value=7.08655e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=356.5	fisher_strand_p_value=1.16723e-26	frequency=2.535e-01	ks_quality_p_value=1	major_base=G	major_cov=123/36	major_frequency=7.465e-01	minor_base=C	minor_cov=0/54	new_cov=0/54	polymorphism_frequency=2.535e-01	polymorphism_score=61.6	prediction=polymorphism	ref_cov=123/36	total_cov=123/114
RA	101	.	Xen36_5	35625	0	G	A	bias_e_value=8.50207e-17	bias_p_value=3.0727e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.8	fisher_strand_p_value=5.40228e-25	frequency=2.569e-01	ks_quality_p_value=1	major_base=G	major_cov=99/8	major_frequency=7.431e-01	minor_base=A	minor_cov=1/36	new_cov=1/36	polymorphism_frequency=2.569e-01	polymorphism_score=20.0	prediction=polymorphism	ref_cov=99/8	total_cov=100/68
RA	102	.	Xen36_5	35627	0	T	C	bias_e_value=2.4973e-08	bias_p_value=9.02538e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.2	fisher_strand_p_value=2.44271e-16	frequency=2.202e-01	ks_quality_p_value=1	major_base=T	major_cov=98/33	major_frequency=7.798e-01	minor_base=C	minor_cov=1/36	new_cov=1/36	polymorphism_frequency=2.202e-01	polymorphism_score=33.0	prediction=polymorphism	ref_cov=98/33	total_cov=99/69
RA	103	.	Xen36_6	78	0	A	T	bias_e_value=182405	bias_p_value=0.0659223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=0.0844813	frequency=3.826e-01	ks_quality_p_value=0.144317	major_base=A	major_cov=43/28	major_frequency=6.174e-01	minor_base=T	minor_cov=19/25	new_cov=19/25	polymorphism_frequency=3.826e-01	polymorphism_score=124.1	prediction=polymorphism	ref_cov=43/28	total_cov=62/53
RA	104	.	Xen36_6	58376	0	C	G	bias_e_value=1.52594e-05	bias_p_value=5.51485e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.5	fisher_strand_p_value=1.81793e-13	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=25/65	major_frequency=7.500e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.500e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=25/65	total_cov=66/65
RA	105	.	Xen36_6	104021	0	A	G	bias_e_value=0.000463708	bias_p_value=1.67587e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.6	fisher_strand_p_value=6.25375e-12	frequency=2.014e-01	ks_quality_p_value=1	major_base=A	major_cov=36/75	major_frequency=7.986e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.014e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=36/75	total_cov=64/75
RA	106	.	Xen36_6	138952	0	T	.	consensus_score=690.7	frequency=1	major_base=.	major_cov=64/99	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/99	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/99
RA	107	.	Xen36_6	156465	0	G	A	bias_e_value=0.00230213	bias_p_value=8.32004e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.2	fisher_strand_p_value=7.29604e-11	frequency=2.381e-01	ks_quality_p_value=0.453757	major_base=G	major_cov=63/49	major_frequency=7.619e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.381e-01	polymorphism_score=63.2	prediction=polymorphism	ref_cov=63/49	total_cov=63/84
RA	108	.	Xen36_7	62548	0	T	G	bias_e_value=2.4647e-13	bias_p_value=8.90757e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=446.6	fisher_strand_p_value=1.82714e-21	frequency=2.768e-01	ks_quality_p_value=1	major_base=T	major_cov=103/59	major_frequency=7.232e-01	minor_base=G	minor_cov=0/62	new_cov=0/62	polymorphism_frequency=2.768e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=103/59	total_cov=103/125
RA	109	.	Xen36_7	62563	0	T	G	bias_e_value=1.60388e-13	bias_p_value=5.79651e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=511.1	fisher_strand_p_value=1.17839e-21	frequency=2.189e-01	ks_quality_p_value=1	major_base=T	major_cov=126/56	major_frequency=7.811e-01	minor_base=G	minor_cov=0/51	new_cov=0/51	polymorphism_frequency=2.189e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=126/56	total_cov=126/110
RA	110	.	Xen36_7	129568	0	T	C	bias_e_value=1.45955e-20	bias_p_value=5.27488e-27	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.6	fisher_strand_p_value=8.02974e-29	frequency=2.883e-01	ks_quality_p_value=1	major_base=T	major_cov=119/39	major_frequency=7.117e-01	minor_base=C	minor_cov=0/64	new_cov=0/64	polymorphism_frequency=2.883e-01	polymorphism_score=61.4	prediction=polymorphism	ref_cov=119/39	total_cov=119/103
RA	111	.	Xen36_7	133418	0	G	C	bias_e_value=1075800	bias_p_value=0.3888	consensus_reject=FREQUENCY_CUTOFF	consensus_score=624.3	fisher_strand_p_value=0.127779	frequency=2.287e-01	ks_quality_p_value=0.992869	major_base=G	major_cov=119/107	major_frequency=7.713e-01	minor_base=C	minor_cov=28/39	new_cov=28/39	polymorphism_frequency=2.287e-01	polymorphism_score=194.6	prediction=polymorphism	ref_cov=119/107	total_cov=148/151
RA	112	.	Xen36_7	133430	0	C	T	bias_e_value=2358530	bias_p_value=0.852386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=478.5	fisher_strand_p_value=0.508489	frequency=2.559e-01	ks_quality_p_value=1	major_base=C	major_cov=112/109	major_frequency=7.441e-01	minor_base=T	minor_cov=35/41	new_cov=35/41	polymorphism_frequency=2.559e-01	polymorphism_score=132.3	prediction=polymorphism	ref_cov=112/109	total_cov=147/150
RA	113	.	Xen36_7	133544	0	G	T	bias_e_value=2149130	bias_p_value=0.776707	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.3	fisher_strand_p_value=0.411294	frequency=3.234e-01	ks_quality_p_value=1	major_base=G	major_cov=59/54	major_frequency=6.766e-01	minor_base=T	minor_cov=32/22	new_cov=32/22	polymorphism_frequency=3.234e-01	polymorphism_score=141.6	prediction=polymorphism	ref_cov=59/54	total_cov=91/76
RA	114	.	Xen36_7	133547	0	A	G	bias_e_value=111824	bias_p_value=0.0404138	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.0	fisher_strand_p_value=0.50229	frequency=3.054e-01	ks_quality_p_value=0.0134089	major_base=A	major_cov=61/55	major_frequency=6.946e-01	minor_base=G	minor_cov=30/21	new_cov=30/21	polymorphism_frequency=3.054e-01	polymorphism_score=101.2	prediction=polymorphism	ref_cov=61/55	total_cov=91/76
RA	115	.	Xen36_7	133565	0	G	A	bias_e_value=905207	bias_p_value=0.327147	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.0	fisher_strand_p_value=0.367347	frequency=2.680e-01	ks_quality_p_value=0.268555	major_base=G	major_cov=56/56	major_frequency=7.320e-01	minor_base=A	minor_cov=24/17	new_cov=24/17	polymorphism_frequency=2.680e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=56/56	total_cov=80/73
RA	116	.	Xen36_7	133568	0	T	C	bias_e_value=2347630	bias_p_value=0.848446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.9	fisher_strand_p_value=0.854441	frequency=2.877e-01	ks_quality_p_value=0.588352	major_base=T	major_cov=56/48	major_frequency=7.123e-01	minor_base=C	minor_cov=24/18	new_cov=24/18	polymorphism_frequency=2.877e-01	polymorphism_score=80.1	prediction=polymorphism	ref_cov=56/48	total_cov=80/66
RA	117	.	Xen36_7	133577	0	C	T	bias_e_value=2308090	bias_p_value=0.834156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.5	fisher_strand_p_value=0.48253	frequency=2.072e-01	ks_quality_p_value=1	major_base=C	major_cov=44/44	major_frequency=7.928e-01	minor_base=T	minor_cov=14/9	new_cov=14/9	polymorphism_frequency=2.072e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=44/44	total_cov=58/53
RA	118	.	Xen36_7	133580	0	T	C	bias_e_value=1610730	bias_p_value=0.582129	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.2	fisher_strand_p_value=0.239735	frequency=2.110e-01	ks_quality_p_value=1	major_base=T	major_cov=42/44	major_frequency=7.890e-01	minor_base=C	minor_cov=15/8	new_cov=15/8	polymorphism_frequency=2.110e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=42/44	total_cov=57/53
RA	119	.	Xen36_8	3742	0	A	C	bias_e_value=1.38916e-09	bias_p_value=5.02049e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.4	fisher_strand_p_value=1.25781e-17	frequency=2.321e-01	ks_quality_p_value=1	major_base=A	major_cov=10/76	major_frequency=7.679e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.321e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=10/76	total_cov=39/76
RA	120	.	Xen36_8	74727	0	C	G	bias_e_value=0.168939	bias_p_value=6.10555e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.4	fisher_strand_p_value=2.95831e-09	frequency=2.292e-01	ks_quality_p_value=1	major_base=C	major_cov=24/50	major_frequency=7.708e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.292e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=24/50	total_cov=56/51
RA	121	.	Xen36_9	23941	0	C	G	bias_e_value=5.40008e-20	bias_p_value=1.95162e-26	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.7	fisher_strand_p_value=3.0322e-28	frequency=3.312e-01	ks_quality_p_value=1	major_base=C	major_cov=14/89	major_frequency=6.688e-01	minor_base=G	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=3.312e-01	polymorphism_score=76.2	prediction=polymorphism	ref_cov=14/89	total_cov=96/89
RA	122	.	Xen36_9	90278	0	T	C	bias_e_value=1879130	bias_p_value=0.679128	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.3	fisher_strand_p_value=0.693164	frequency=3.248e-01	ks_quality_p_value=0.454744	major_base=T	major_cov=42/37	major_frequency=6.752e-01	minor_base=C	minor_cov=18/20	new_cov=18/20	polymorphism_frequency=3.248e-01	polymorphism_score=73.3	prediction=polymorphism	ref_cov=42/37	total_cov=60/58
RA	123	.	Xen36_9	90290	0	T	A	bias_e_value=1826630	bias_p_value=0.660156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.2	fisher_strand_p_value=0.29914	frequency=2.605e-01	ks_quality_p_value=1	major_base=T	major_cov=50/38	major_frequency=7.395e-01	minor_base=A	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=2.605e-01	polymorphism_score=77.2	prediction=polymorphism	ref_cov=50/38	total_cov=65/55
RA	124	.	Xen36_9	99535	0	A	C	bias_e_value=5.78684e-17	bias_p_value=2.0914e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=445.5	fisher_strand_p_value=3.65186e-25	frequency=2.464e-01	ks_quality_p_value=1	major_base=A	major_cov=36/120	major_frequency=7.536e-01	minor_base=C	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=2.464e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=36/120	total_cov=89/121
MC	125	.	Xen36_9	1	18	0	0	left_inside_cov=0	left_outside_cov=NA	right_inside_cov=23	right_outside_cov=214
JC	126	.	Xen36_1	1	1	Xen36_14	47747	-1	0	alignment_overlap=14	coverage_minus=77	coverage_plus=59	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=134	key=Xen36_1__1__1__Xen36_14__47761__-1__14____150__150__0__0	max_left=126	max_left_minus=123	max_left_plus=126	max_min_left=67	max_min_left_minus=67	max_min_left_plus=66	max_min_right=65	max_min_right_minus=63	max_min_right_plus=65	max_pos_hash_score=270	max_right=134	max_right_minus=134	max_right_plus=128	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=1.05	new_junction_read_count=158	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=136
JC	127	.	Xen36_1	1	1	Xen36_14	47761	-1	-56	alignment_overlap=-56	coverage_minus=7	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=92	key=Xen36_1__1__1__Xen36_14__47761__-1__-56__GATTAGGGGCTCTTTTGCAGTTGTGCGCAAGCAAGCCAACTGTATTCCTTAACTCC__150__150__0__0	max_left=47	max_left_minus=47	max_left_plus=47	max_min_left=46	max_min_left_minus=43	max_min_left_plus=46	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=186	max_right=76	max_right_minus=76	max_right_plus=55	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.15	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=11	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=GATTAGGGGCTCTTTTGCAGTTGTGCGCAAGCAAGCCAACTGTATTCCTTAACTCC
JC	128	.	Xen36_1	9	1	Xen36_14	47754	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=2.338e-01	junction_possible_overlap_registers=147	key=Xen36_1__9__1__Xen36_14__47754__-1__-1__A__150__150__0__0	max_left=70	max_left_minus=39	max_left_plus=70	max_min_left=70	max_min_left_minus=39	max_min_left_plus=70	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=108	max_right_minus=72	max_right_plus=108	neg_log10_pos_hash_p_value=13.6	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=2.338e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.16	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=A
JC	129	.	Xen36_1	86	-1	Xen36_14	47623	1	-1	alignment_overlap=-1	coverage_minus=31	coverage_plus=33	flanking_left=86	flanking_right=139	frequency=4.028e-01	junction_possible_overlap_registers=147	key=Xen36_1__86__-1__Xen36_14__47623__1__-1__A__86__139__0__0	max_left=86	max_left_minus=86	max_left_plus=86	max_min_left=69	max_min_left_minus=69	max_min_left_plus=66	max_min_right=74	max_min_right_minus=72	max_min_right_plus=74	max_pos_hash_score=296	max_right=137	max_right_minus=132	max_right_plus=137	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.41	new_junction_read_count=67	polymorphism_frequency=4.028e-01	pos_hash_score=42	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=135	side_2_redundant=0	total_non_overlap_reads=64	unique_read_sequence=A
JC	130	.	Xen36_1	63704	1	Xen36_9	90199	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=8.862e-02	junction_possible_overlap_registers=147	key=Xen36_1__63704__1__Xen36_9__90198__1__1____150__150__0__0	max_left=50	max_left_minus=10	max_left_plus=50	max_min_left=50	max_min_left_minus=10	max_min_left_plus=50	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=147	max_right_minus=147	max_right_plus=99	neg_log10_pos_hash_p_value=13.6	new_junction_coverage=0.06	new_junction_read_count=11	polymorphism_frequency=8.862e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=1	side_1_possible_overlap_registers=148	side_1_read_count=109	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=147	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=11
JC	131	.	Xen36_1	116544	1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=19	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=4.188e-01	junction_possible_overlap_registers=133	key=Xen36_1__116544__1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=39	max_left_minus=38	max_left_plus=39	max_min_left=39	max_min_left_minus=38	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.20	new_junction_read_count=34	polymorphism_frequency=4.188e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34	unique_read_sequence=TGACTAGAGTTGAAA
JC	132	.	Xen36_1	116601	1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=19	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=4.120e-01	junction_possible_overlap_registers=133	key=Xen36_1__116601__1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=39	max_left_minus=38	max_left_plus=39	max_min_left=39	max_min_left_minus=38	max_min_left_plus=39	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.20	new_junction_read_count=34	polymorphism_frequency=4.120e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34	unique_read_sequence=TGACTAGAGTTGAAA
JC	133	.	Xen36_1	162609	-1	Xen36_1	169199	1	-18	alignment_overlap=-18	coverage_minus=51	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=4.910e-01	junction_possible_overlap_registers=130	key=Xen36_1__162609__-1__Xen36_1__169199__1__-18__TGTAAGCTGACTTTCCGC__150__150__0__0	max_left=132	max_left_minus=130	max_left_plus=132	max_min_left=65	max_min_left_minus=65	max_min_left_plus=62	max_min_right=66	max_min_right_minus=66	max_min_right_plus=65	max_pos_hash_score=262	max_right=80	max_right_minus=80	max_right_plus=79	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.76	new_junction_read_count=100	polymorphism_frequency=4.910e-01	pos_hash_score=52	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=86	unique_read_sequence=TGTAAGCTGACTTTCCGC
JC	134	.	Xen36_1	162635	-1	Xen36_1	369499	1	-12	alignment_overlap=-12	coverage_minus=12	coverage_plus=16	flanking_left=150	flanking_right=150	frequency=2.829e-01	junction_possible_overlap_registers=136	key=Xen36_1__162635__-1__Xen36_1__369499__1__-12__ATGTTGGGGCCC__150__150__0__0	max_left=108	max_left_minus=106	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=53	max_pos_hash_score=274	max_right=57	max_right_minus=57	max_right_plus=53	neg_log10_pos_hash_p_value=7.6	new_junction_coverage=0.22	new_junction_read_count=31	polymorphism_frequency=2.829e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=28	unique_read_sequence=ATGTTGGGGCCC
JC	135	.	Xen36_1	162640	1	Xen36_1	169230	-1	-36	alignment_overlap=-36	coverage_minus=11	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=3.405e-01	junction_possible_overlap_registers=112	key=Xen36_1__162640__1__Xen36_1__169230__-1__-36__ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAA__150__150__0__0	max_left=67	max_left_minus=67	max_left_plus=67	max_min_left=56	max_min_left_minus=55	max_min_left_plus=56	max_min_right=56	max_min_right_minus=47	max_min_right_plus=56	max_pos_hash_score=226	max_right=77	max_right_minus=77	max_right_plus=62	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.37	new_junction_read_count=42	polymorphism_frequency=3.405e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAA
JC	136	.	Xen36_1	162640	1	Xen36_1	169278	-1	-44	alignment_overlap=-44	coverage_minus=11	coverage_plus=25	flanking_left=150	flanking_right=150	frequency=3.294e-01	junction_possible_overlap_registers=104	key=Xen36_1__162640__1__Xen36_1__169278__-1__-44__ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT__150__150__0__0	max_left=67	max_left_minus=64	max_left_plus=67	max_min_left=52	max_min_left_minus=51	max_min_left_plus=52	max_min_right=52	max_min_right_minus=43	max_min_right_plus=52	max_pos_hash_score=210	max_right=97	max_right_minus=93	max_right_plus=97	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.37	new_junction_read_count=39	polymorphism_frequency=3.294e-01	pos_hash_score=28	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=36	unique_read_sequence=ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT
JC	137	.	Xen36_1	162640	1	Xen36_4	158370	1	-47	alignment_overlap=-47	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.013e-02	junction_possible_overlap_registers=101	key=Xen36_1__162640__1__Xen36_4__158370__1__-47__ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC__150__150__0__0	max_left=47	max_left_minus=47	max_left_plus=46	max_min_left=47	max_min_left_minus=47	max_min_left_plus=46	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=204	max_right=61	max_right_minus=61	max_right_plus=57	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=7.013e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=164	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC
JC	138	.	Xen36_1	162640	1	Xen36_4	158428	1	-47	alignment_overlap=-47	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.037e-02	junction_possible_overlap_registers=101	key=Xen36_1__162640__1__Xen36_4__158428__1__-47__ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC__150__150__0__0	max_left=47	max_left_minus=47	max_left_plus=46	max_min_left=47	max_min_left_minus=47	max_min_left_plus=46	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=204	max_right=61	max_right_minus=61	max_right_plus=57	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=7.037e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=ACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC
JC	139	.	Xen36_1	162647	-1	Xen36_1	395868	1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=5.816e-02	junction_possible_overlap_registers=146	key=Xen36_1__162647__-1__Xen36_1__395868__1__-2__CG__150__150__0__0	max_left=120	max_left_minus=89	max_left_plus=120	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=65	max_min_right_minus=62	max_min_right_plus=65	max_pos_hash_score=294	max_right=65	max_right_minus=62	max_right_plus=65	neg_log10_pos_hash_p_value=13.5	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=5.816e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=6	unique_read_sequence=CG
JC	140	.	Xen36_1	162706	-1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=28	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=6.021e-01	junction_possible_overlap_registers=133	key=Xen36_1__162706__-1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=57	max_left_minus=56	max_left_plus=57	max_min_left=57	max_min_left_minus=56	max_min_left_plus=57	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.29	new_junction_read_count=51	polymorphism_frequency=6.021e-01	pos_hash_score=31	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51	unique_read_sequence=TGACTAGAGTTGAAA
JC	141	.	Xen36_1	162706	-1	Xen36_9	124450	-1	-15	alignment_overlap=-15	coverage_minus=45	coverage_plus=32	flanking_left=150	flanking_right=150	frequency=7.087e-01	junction_possible_overlap_registers=133	key=Xen36_1__162706__-1__Xen36_9__124450__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=66	max_left_minus=66	max_left_plus=65	max_min_left=66	max_min_left_minus=66	max_min_left_plus=65	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=132	max_right_plus=133	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.53	new_junction_read_count=82	polymorphism_frequency=7.087e-01	pos_hash_score=42	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=77	unique_read_sequence=TGACTAGAGTTGAAA
JC	142	.	Xen36_1	169165	1	Xen36_1	169278	-1	-54	alignment_overlap=-54	coverage_minus=20	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=3.281e-01	junction_possible_overlap_registers=94	key=Xen36_1__169165__1__Xen36_1__169278__-1__-54__CGGGGCCCCAACATAGAAGCTGACGGAAAGTCAGCTTACAATAATGTGCAAGTT__150__150__0__0	max_left=67	max_left_minus=64	max_left_plus=67	max_min_left=45	max_min_left_minus=45	max_min_left_plus=44	max_min_right=47	max_min_right_minus=46	max_min_right_plus=47	max_pos_hash_score=190	max_right=79	max_right_minus=79	max_right_plus=74	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.40	new_junction_read_count=38	polymorphism_frequency=3.281e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=38	unique_read_sequence=CGGGGCCCCAACATAGAAGCTGACGGAAAGTCAGCTTACAATAATGTGCAAGTT
JC	143	.	Xen36_1	169165	1	Xen36_1	169278	-1	-54	alignment_overlap=-54	coverage_minus=7	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=1.037e-01	junction_possible_overlap_registers=94	key=Xen36_1__169165__1__Xen36_1__169278__-1__-54__CGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTT__150__150__0__0	max_left=66	max_left_minus=66	max_left_plus=52	max_min_left=46	max_min_left_minus=40	max_min_left_plus=46	max_min_right=45	max_min_right_minus=45	max_min_right_plus=44	max_pos_hash_score=190	max_right=56	max_right_minus=56	max_right_plus=50	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=1.037e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=CGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTT
JC	144	.	Xen36_1	169165	1	Xen36_4	158370	1	-57	alignment_overlap=-57	coverage_minus=8	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.183e-01	junction_possible_overlap_registers=91	key=Xen36_1__169165__1__Xen36_4__158370__1__-57__CGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGC__150__150__0__0	max_left=66	max_left_minus=66	max_left_plus=52	max_min_left=46	max_min_left_minus=40	max_min_left_plus=46	max_min_right=42	max_min_right_minus=42	max_min_right_plus=41	max_pos_hash_score=184	max_right=61	max_right_minus=60	max_right_plus=61	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.11	new_junction_read_count=12	polymorphism_frequency=1.183e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=164	side_2_redundant=0	total_non_overlap_reads=12	unique_read_sequence=CGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGC
JC	145	.	Xen36_1	169208	1	Xen36_1	256545	1	-18	alignment_overlap=-18	coverage_minus=18	coverage_plus=20	flanking_left=150	flanking_right=150	frequency=3.283e-01	junction_possible_overlap_registers=130	key=Xen36_1__169208__1__Xen36_1__256545__1__-18__CAGAAGCTGGTGGAAAGC__150__150__0__0	max_left=68	max_left_minus=67	max_left_plus=68	max_min_left=64	max_min_left_minus=61	max_min_left_plus=64	max_min_right=65	max_min_right_minus=65	max_min_right_plus=64	max_pos_hash_score=262	max_right=128	max_right_minus=128	max_right_plus=127	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.29	new_junction_read_count=38	polymorphism_frequency=3.283e-01	pos_hash_score=29	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=38	unique_read_sequence=CAGAAGCTGGTGGAAAGC
JC	146	.	Xen36_1	169221	1	Xen36_4	133164	-1	-40	alignment_overlap=-40	coverage_minus=11	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.685e-01	junction_possible_overlap_registers=108	key=Xen36_1__169221__1__Xen36_4__133164__-1__-40__GGTGGGACAACGATAAAGAAATACTTTTTCTATAGAAATT__150__150__0__0	max_left=57	max_left_minus=57	max_left_plus=56	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=54	max_min_right_minus=54	max_min_right_plus=54	max_pos_hash_score=218	max_right=66	max_right_minus=65	max_right_plus=66	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.13	new_junction_read_count=17	polymorphism_frequency=1.685e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=16	unique_read_sequence=GGTGGGACAACGATAAAGAAATACTTTTTCTATAGAAATT
JC	147	.	Xen36_1	169230	-1	Xen36_2	226887	-1	-45	alignment_overlap=-45	coverage_minus=14	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=3.595e-01	junction_possible_overlap_registers=103	key=Xen36_1__169230__-1__Xen36_2__226887__-1__-45__TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=77	max_left_minus=62	max_left_plus=77	max_min_left=49	max_min_left_minus=49	max_min_left_plus=47	max_min_right=52	max_min_right_minus=52	max_min_right_plus=46	max_pos_hash_score=208	max_right=58	max_right_minus=58	max_right_plus=58	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.42	new_junction_read_count=42	polymorphism_frequency=3.595e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	148	.	Xen36_1	169230	-1	Xen36_5	2080	1	-45	alignment_overlap=-45	coverage_minus=36	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=3.680e-01	junction_possible_overlap_registers=103	key=Xen36_1__169230__-1__Xen36_5__2080__1__-45__TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=42	max_left_minus=42	max_left_plus=33	max_min_left=42	max_min_left_minus=42	max_min_left_plus=33	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=208	max_right=92	max_right_minus=92	max_right_plus=91	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.45	new_junction_read_count=61	polymorphism_frequency=3.680e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=194	side_2_redundant=0	total_non_overlap_reads=54	unique_read_sequence=TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	149	.	Xen36_1	169230	-1	Xen36_6	26840	1	-56	alignment_overlap=-56	coverage_minus=0	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=2.557e-01	junction_possible_overlap_registers=92	key=Xen36_1__169230__-1__Xen36_6__26840__1__-56__TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTC__150__150__0__0	max_left=77	max_left_minus=0	max_left_plus=77	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_pos_hash_score=186	max_right=18	max_right_minus=0	max_right_plus=18	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.22	new_junction_read_count=22	polymorphism_frequency=2.557e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTC
JC	150	.	Xen36_1	169230	-1	Xen36_7	74529	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=6	flanking_left=150	flanking_right=150	frequency=1.556e-01	junction_possible_overlap_registers=146	key=Xen36_1__169230__-1__Xen36_7__74531__-1__2____150__150__0__0	max_left=75	max_left_minus=47	max_left_plus=75	max_min_left=64	max_min_left_minus=47	max_min_left_plus=64	max_min_right=74	max_min_right_minus=0	max_min_right_plus=74	max_pos_hash_score=294	max_right=101	max_right_minus=101	max_right_plus=81	neg_log10_pos_hash_p_value=12.9	new_junction_coverage=0.12	new_junction_read_count=24	polymorphism_frequency=1.556e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=155	side_2_redundant=0	total_non_overlap_reads=7
JC	151	.	Xen36_1	169262	-1	Xen36_1	256625	-1	-14	alignment_overlap=-14	coverage_minus=6	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=1.419e-01	junction_possible_overlap_registers=134	key=Xen36_1__169262__-1__Xen36_1__256625__-1__-14__GTGTTGGGGCCCCG__150__150__0__0	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=32	max_min_left_minus=32	max_min_left_plus=32	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=270	max_right=135	max_right_minus=135	max_right_plus=132	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.12	new_junction_read_count=17	polymorphism_frequency=1.419e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=107	side_2_redundant=0	total_non_overlap_reads=17	unique_read_sequence=GTGTTGGGGCCCCG
JC	152	.	Xen36_1	169278	-1	Xen36_1	256623	-1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=8.150e-02	junction_possible_overlap_registers=146	key=Xen36_1__169278__-1__Xen36_1__256625__-1__2____150__150__0__0	max_left=13	max_left_minus=13	max_left_plus=12	max_min_left=13	max_min_left_minus=13	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=145	max_right_minus=145	max_right_plus=139	neg_log10_pos_hash_p_value=11.8	new_junction_coverage=0.07	new_junction_read_count=10	polymorphism_frequency=8.150e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=109	side_2_redundant=0	total_non_overlap_reads=10
JC	153	.	Xen36_1	169278	-1	Xen36_1	370018	1	-54	alignment_overlap=-54	coverage_minus=11	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.569e-01	junction_possible_overlap_registers=94	key=Xen36_1__169278__-1__Xen36_1__370018__1__-54__AACTTGCACATTATTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCCCG__150__150__0__0	max_left=75	max_left_minus=75	max_left_plus=0	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=36	max_min_right_minus=36	max_min_right_plus=0	max_pos_hash_score=190	max_right=52	max_right_minus=52	max_right_plus=0	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.14	new_junction_read_count=13	polymorphism_frequency=1.569e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=AACTTGCACATTATTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCCCG
JC	154	.	Xen36_1	169278	-1	Xen36_1	395868	1	-54	alignment_overlap=-54	coverage_minus=11	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=1.708e-01	junction_possible_overlap_registers=94	key=Xen36_1__169278__-1__Xen36_1__395868__1__-54__AACTTGCACATTATTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCCCG__150__150__0__0	max_left=75	max_left_minus=75	max_left_plus=27	max_min_left=44	max_min_left_minus=44	max_min_left_plus=27	max_min_right=36	max_min_right_minus=36	max_min_right_plus=0	max_pos_hash_score=190	max_right=69	max_right_minus=52	max_right_plus=69	neg_log10_pos_hash_p_value=8.4	new_junction_coverage=0.15	new_junction_read_count=14	polymorphism_frequency=1.708e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=12	unique_read_sequence=AACTTGCACATTATTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCCCG
JC	155	.	Xen36_1	169278	-1	Xen36_2	226887	-1	-53	alignment_overlap=-53	coverage_minus=23	coverage_plus=11	flanking_left=150	flanking_right=150	frequency=3.378e-01	junction_possible_overlap_registers=95	key=Xen36_1__169278__-1__Xen36_2__226887__-1__-53__AACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=43	max_min_left_minus=43	max_min_left_plus=43	max_min_right=47	max_min_right_minus=47	max_min_right_plus=42	max_pos_hash_score=192	max_right=58	max_right_minus=58	max_right_plus=55	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.40	new_junction_read_count=37	polymorphism_frequency=3.378e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=34	unique_read_sequence=AACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	156	.	Xen36_1	169278	-1	Xen36_4	158540	-1	-54	alignment_overlap=-54	coverage_minus=10	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=1.282e-01	junction_possible_overlap_registers=94	key=Xen36_1__169278__-1__Xen36_4__158540__-1__-54__AACTTGCACATTATTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCCCG__150__150__0__0	max_left=75	max_left_minus=75	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=36	max_min_right_minus=36	max_min_right_plus=0	max_pos_hash_score=190	max_right=36	max_right_minus=36	max_right_plus=0	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.11	new_junction_read_count=12	polymorphism_frequency=1.282e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=10	unique_read_sequence=AACTTGCACATTATTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCCCG
JC	157	.	Xen36_1	169278	-1	Xen36_5	2080	1	-53	alignment_overlap=-53	coverage_minus=33	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=3.545e-01	junction_possible_overlap_registers=95	key=Xen36_1__169278__-1__Xen36_5__2080__1__-53__AACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=30	max_left_minus=30	max_left_plus=27	max_min_left=30	max_min_left_minus=30	max_min_left_plus=27	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=192	max_right=92	max_right_minus=92	max_right_plus=91	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.44	new_junction_read_count=55	polymorphism_frequency=3.545e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=194	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=AACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	158	.	Xen36_1	169287	1	Xen36_7	74427	1	0	alignment_overlap=0	coverage_minus=27	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=2.799e-01	junction_possible_overlap_registers=148	key=Xen36_1__169287__1__Xen36_7__74427__1__0____150__150__0__0	max_left=78	max_left_minus=75	max_left_plus=78	max_min_left=72	max_min_left_minus=72	max_min_left_plus=72	max_min_right=75	max_min_right_minus=75	max_min_right_plus=74	max_pos_hash_score=298	max_right=105	max_right_minus=105	max_right_plus=105	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.28	new_junction_read_count=55	polymorphism_frequency=2.799e-01	pos_hash_score=32	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=50
JC	159	.	Xen36_1	207799	-1	Xen36_9	90206	1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.511e-02	junction_possible_overlap_registers=140	key=Xen36_1__207799__-1__Xen36_9__90198__1__8____150__150__0__0	max_left=10	max_left_minus=10	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=140	max_right_plus=0	neg_log10_pos_hash_p_value=13.9	new_junction_coverage=0.06	new_junction_read_count=10	polymorphism_frequency=8.511e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=10
JC	160	.	Xen36_1	207801	-1	Xen36_1	256623	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1.460e-01	junction_possible_overlap_registers=146	key=Xen36_1__207801__-1__Xen36_1__256625__-1__2____150__150__0__0	max_left=22	max_left_minus=22	max_left_plus=22	max_min_left=22	max_min_left_minus=22	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=294	max_right=145	max_right_minus=145	max_right_plus=139	neg_log10_pos_hash_p_value=9.6	new_junction_coverage=0.12	new_junction_read_count=18	polymorphism_frequency=1.460e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=17
JC	161	.	Xen36_1	256506	1	Xen36_1	256617	-1	0	alignment_overlap=8	coverage_minus=9	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1.724e-01	junction_possible_overlap_registers=140	key=Xen36_1__256506__1__Xen36_1__256625__-1__8____150__150__0__0	max_left=22	max_left_minus=22	max_left_plus=22	max_min_left=22	max_min_left_minus=22	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=139	max_right_minus=139	max_right_plus=133	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.12	new_junction_read_count=17	polymorphism_frequency=1.724e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=17
JC	162	.	Xen36_1	256514	1	Xen36_9	90206	1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=9.256e-02	junction_possible_overlap_registers=140	key=Xen36_1__256514__1__Xen36_9__90198__1__8____150__150__0__0	max_left=10	max_left_minus=10	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=140	max_right_plus=0	neg_log10_pos_hash_p_value=13.9	new_junction_coverage=0.06	new_junction_read_count=10	polymorphism_frequency=9.256e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=10
JC	163	.	Xen36_1	256560	1	Xen36_5	2080	1	-45	alignment_overlap=-45	coverage_minus=21	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.953e-01	junction_possible_overlap_registers=103	key=Xen36_1__256560__1__Xen36_5__2080__1__-45__TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=23	max_left_minus=23	max_left_plus=22	max_min_left=23	max_min_left_minus=23	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=208	max_right=92	max_right_minus=92	max_right_plus=91	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.19	new_junction_read_count=25	polymorphism_frequency=1.953e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=194	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	164	.	Xen36_1	256570	1	Xen36_9	90206	1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.685e-02	junction_possible_overlap_registers=140	key=Xen36_1__256570__1__Xen36_9__90198__1__8____150__150__0__0	max_left=10	max_left_minus=10	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=140	max_right_plus=0	neg_log10_pos_hash_p_value=13.9	new_junction_coverage=0.06	new_junction_read_count=10	polymorphism_frequency=8.685e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=106	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=10
JC	165	.	Xen36_1	256625	-1	Xen36_1	469997	1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=9	flanking_left=150	flanking_right=150	frequency=1.541e-01	junction_possible_overlap_registers=146	key=Xen36_1__256625__-1__Xen36_1__469995__1__2____150__150__0__0	max_left=145	max_left_minus=139	max_left_plus=145	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=22	max_min_right_minus=22	max_min_right_plus=22	max_pos_hash_score=294	max_right=22	max_right_minus=22	max_right_plus=22	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.12	new_junction_read_count=18	polymorphism_frequency=1.541e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=2	side_1_possible_overlap_registers=148	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=146	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=16
JC	166	.	Xen36_1	256625	-1	Xen36_16	9579	-1	-7	alignment_overlap=-7	coverage_minus=6	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=9.358e-02	junction_possible_overlap_registers=141	key=Xen36_1__256625__-1__Xen36_16__9579__-1__-7__CGGGGCC__150__150__0__0	max_left=142	max_left_minus=141	max_left_plus=142	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=8	max_pos_hash_score=284	max_right=11	max_right_minus=11	max_right_plus=8	neg_log10_pos_hash_p_value=12.0	new_junction_coverage=0.08	new_junction_read_count=12	polymorphism_frequency=9.358e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=140	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=CGGGGCC
JC	167	.	Xen36_1	256625	-1	Xen36_9	90151	-1	0	alignment_overlap=10	coverage_minus=6	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1.240e-01	junction_possible_overlap_registers=138	key=Xen36_1__256625__-1__Xen36_9__90161__-1__10____150__150__0__0	max_left=137	max_left_minus=131	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=15	max_pos_hash_score=278	max_right=18	max_right_minus=18	max_right_plus=15	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.09	new_junction_read_count=15	polymorphism_frequency=1.240e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=10	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=138	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=14
JC	168	.	Xen36_1	256625	-1	Xen36_9	90265	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=1.172e-01	junction_possible_overlap_registers=148	key=Xen36_1__256625__-1__Xen36_9__90265__-1__0____150__150__0__0	max_left=147	max_left_minus=141	max_left_plus=147	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=15	max_pos_hash_score=298	max_right=18	max_right_minus=18	max_right_plus=15	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.09	new_junction_read_count=15	polymorphism_frequency=1.172e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=14
JC	169	.	Xen36_1	276937	-1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=1	coverage_plus=2	flanking_left=150	flanking_right=150	frequency=6.978e-02	junction_possible_overlap_registers=133	key=Xen36_1__276937__-1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=3	max_left_minus=3	max_left_plus=2	max_min_left=3	max_min_left_minus=3	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=124	max_right_plus=133	neg_log10_pos_hash_p_value=14.2	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=6.978e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=TGACTAGAGTTGAAA
JC	170	.	Xen36_1	332740	-1	Xen36_12	77	-1	-5	alignment_overlap=-5	coverage_minus=9	coverage_plus=5	flanking_left=150	flanking_right=77	frequency=2.751e-01	junction_possible_overlap_registers=143	key=Xen36_1__332740__-1__Xen36_12__77__-1__-5__ATTAA__150__77__0__1	max_left=81	max_left_minus=79	max_left_plus=81	max_min_left=70	max_min_left_minus=66	max_min_left_plus=70	max_min_right=70	max_min_right_minus=69	max_min_right_plus=70	max_pos_hash_score=288	max_right=77	max_right_minus=77	max_right_plus=76	neg_log10_pos_hash_p_value=11.1	new_junction_coverage=0.20	new_junction_read_count=33	polymorphism_frequency=2.751e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14	unique_read_sequence=ATTAA
JC	171	.	Xen36_1	369555	-1	Xen36_5	2091	1	-11	alignment_overlap=-11	coverage_minus=1	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=5.160e-02	junction_possible_overlap_registers=137	key=Xen36_1__369555__-1__Xen36_5__2091__1__-11__CACCCCAACTC__150__150__0__0	max_left=52	max_left_minus=52	max_left_plus=52	max_min_left=52	max_min_left_minus=52	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=276	max_right=86	max_right_minus=86	max_right_plus=85	neg_log10_pos_hash_p_value=14.4	new_junction_coverage=0.04	new_junction_read_count=7	polymorphism_frequency=5.160e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=202	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CACCCCAACTC
JC	172	.	Xen36_1	369670	-1	Xen36_5	192873	-1	-16	alignment_overlap=-16	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=2.549e-01	junction_possible_overlap_registers=132	key=Xen36_1__369670__-1__Xen36_5__192873__-1__-16__CTGACTAGAGTTGAAA__150__150__0__0	max_left=11	max_left_minus=11	max_left_plus=3	max_min_left=11	max_min_left_minus=11	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=266	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.05	new_junction_read_count=9	polymorphism_frequency=2.549e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.39	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=59	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=CTGACTAGAGTTGAAA
JC	173	.	Xen36_1	469997	1	Xen36_9	90206	1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=8.981e-02	junction_possible_overlap_registers=140	key=Xen36_1__469997__1__Xen36_9__90198__1__8____150__150__0__0	max_left=10	max_left_minus=10	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=140	max_right_plus=0	neg_log10_pos_hash_p_value=13.9	new_junction_coverage=0.06	new_junction_read_count=10	polymorphism_frequency=8.981e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=98	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=10
JC	174	.	Xen36_1	648761	1	Xen36_33	1	1	-1	alignment_overlap=-1	coverage_minus=30	coverage_plus=34	flanking_left=77	flanking_right=150	frequency=5.861e-01	junction_possible_overlap_registers=147	key=Xen36_1__648761__1__Xen36_33__1__1__-1__C__77__150__0__0	max_left=71	max_left_minus=62	max_left_plus=71	max_min_left=71	max_min_left_minus=62	max_min_left_plus=71	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=296	max_right=147	max_right_minus=147	max_right_plus=145	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.50	new_junction_read_count=64	polymorphism_frequency=5.861e-01	pos_hash_score=34	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=64	unique_read_sequence=C
JC	175	.	Xen36_10	1	1	Xen36_28	1613	-1	0	alignment_overlap=62	coverage_minus=66	coverage_plus=120	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen36_10__1__1__Xen36_28__1675__-1__62____150__150__0__0	max_left=87	max_left_minus=85	max_left_plus=87	max_min_left=43	max_min_left_minus=42	max_min_left_plus=43	max_min_right=44	max_min_right_minus=39	max_min_right_plus=44	max_pos_hash_score=174	max_right=72	max_right_minus=72	max_right_plus=72	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.78	new_junction_read_count=207	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=62	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=186
JC	176	.	Xen36_10	106197	-1	Xen36_16	77	-1	-29	alignment_overlap=-29	coverage_minus=24	coverage_plus=22	flanking_left=150	flanking_right=77	frequency=5.711e-01	junction_possible_overlap_registers=119	key=Xen36_10__106197__-1__Xen36_16__77__-1__-29__CTCCAGCTTATTCAGTTAATTAATAATCA__150__77__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=60	max_min_left_minus=60	max_min_left_plus=59	max_min_right=56	max_min_right_minus=56	max_min_right_plus=54	max_pos_hash_score=240	max_right=77	max_right_minus=77	max_right_plus=62	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.40	new_junction_read_count=53	polymorphism_frequency=5.711e-01	pos_hash_score=29	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=46	unique_read_sequence=CTCCAGCTTATTCAGTTAATTAATAATCA
JC	177	.	Xen36_11	1	1	Xen36_24	4199	-1	0	alignment_overlap=5	coverage_minus=39	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=4.734e-01	junction_possible_overlap_registers=143	key=Xen36_11__1__1__Xen36_24__4204__-1__5____150__150__0__0	max_left=142	max_left_minus=142	max_left_plus=140	max_min_left=34	max_min_left_minus=34	max_min_left_plus=4	max_min_right=51	max_min_right_minus=51	max_min_right_plus=45	max_pos_hash_score=288	max_right=141	max_right_minus=111	max_right_plus=141	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.47	new_junction_read_count=98	polymorphism_frequency=4.734e-01	pos_hash_score=42	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=218	side_2_redundant=0	total_non_overlap_reads=73
JC	178	.	Xen36_11	74667	1	Xen36_13	127	-1	0	alignment_overlap=19	coverage_minus=76	coverage_plus=105	flanking_left=58	flanking_right=127	frequency=NA	junction_possible_overlap_registers=129	key=Xen36_11__74667__1__Xen36_13__146__-1__19____58__127__1__1	max_left=58	max_left_minus=58	max_left_plus=58	max_min_left=58	max_min_left_minus=58	max_min_left_plus=58	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=260	max_right=127	max_right_minus=127	max_right_plus=127	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.99	new_junction_read_count=194	polymorphism_frequency=NA	pos_hash_score=75	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=19	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=181
JC	179	.	Xen36_11	74675	1	Xen36_11	74743	-1	0	alignment_overlap=8	coverage_minus=29	coverage_plus=22	flanking_left=69	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen36_11__74667__1__Xen36_11__74743__-1__8____69__150__1__0	max_left=69	max_left_minus=66	max_left_plus=69	max_min_left=69	max_min_left_minus=66	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=137	max_right_plus=140	neg_log10_pos_hash_p_value=9.4	new_junction_coverage=0.25	new_junction_read_count=55	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=8	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51
JC	180	.	Xen36_12	1	1	Xen36_15	37	1	0	alignment_overlap=36	coverage_minus=65	coverage_plus=58	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=112	key=Xen36_12__1__1__Xen36_15__1__1__36____150__150__0__0	max_left=115	max_left_minus=113	max_left_plus=115	max_min_left=42	max_min_left_minus=42	max_min_left_plus=42	max_min_right=41	max_min_right_minus=41	max_min_right_plus=41	max_pos_hash_score=226	max_right=110	max_right_minus=107	max_right_plus=110	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=1.12	new_junction_read_count=164	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=36	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=112	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=123
JC	181	.	Xen36_12	42	1	Xen36_12	299	-1	0	alignment_overlap=37	coverage_minus=44	coverage_plus=30	flanking_left=150	flanking_right=150	frequency=4.180e-01	junction_possible_overlap_registers=111	key=Xen36_12__42__1__Xen36_12__336__-1__37____150__150__0__0	max_left=114	max_left_minus=101	max_left_plus=114	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=47	max_min_right_minus=46	max_min_right_plus=47	max_pos_hash_score=224	max_right=111	max_right_minus=105	max_right_plus=111	neg_log10_pos_hash_p_value=2.5	new_junction_coverage=0.66	new_junction_read_count=93	polymorphism_frequency=4.180e-01	pos_hash_score=48	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=37	side_1_possible_overlap_registers=148	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.40	side_2_overlap=0	side_2_possible_overlap_registers=111	side_2_read_count=199	side_2_redundant=0	total_non_overlap_reads=74
JC	182	.	Xen36_12	77	-1	Xen36_16	1	1	-12	alignment_overlap=-12	coverage_minus=26	coverage_plus=25	flanking_left=77	flanking_right=150	frequency=1	junction_possible_overlap_registers=136	key=Xen36_12__77__-1__Xen36_16__1__1__-12__GTTTTAAATCGG__77__150__1__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=68	max_min_left_minus=68	max_min_left_plus=65	max_min_right=65	max_min_right_minus=62	max_min_right_plus=65	max_pos_hash_score=274	max_right=135	max_right_minus=131	max_right_plus=135	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.38	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51	unique_read_sequence=GTTTTAAATCGG
JC	183	.	Xen36_12	77	-1	Xen36_16	35256	1	-4	alignment_overlap=-4	coverage_minus=23	coverage_plus=17	flanking_left=77	flanking_right=150	frequency=2.757e-01	junction_possible_overlap_registers=144	key=Xen36_12__77__-1__Xen36_16__35256__1__-4__TTAA__77__150__1__0	max_left=60	max_left_minus=60	max_left_plus=59	max_min_left=60	max_min_left_minus=60	max_min_left_plus=59	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=290	max_right=145	max_right_minus=145	max_right_plus=140	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.24	new_junction_read_count=40	polymorphism_frequency=2.757e-01	pos_hash_score=30	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=40	unique_read_sequence=TTAA
JC	184	.	Xen36_12	77	-1	Xen36_3	250715	1	-44	alignment_overlap=-44	coverage_minus=37	coverage_plus=54	flanking_left=77	flanking_right=150	frequency=4.157e-01	junction_possible_overlap_registers=104	key=Xen36_12__77__-1__Xen36_3__250715__1__-44__GTTTTTTAATCAAATTTTGGTTAAAAAATAAAAGGACAAGATGA__77__150__1__0	max_left=77	max_left_minus=77	max_left_plus=77	max_min_left=51	max_min_left_minus=51	max_min_left_plus=49	max_min_right=50	max_min_right_minus=36	max_min_right_plus=50	max_pos_hash_score=210	max_right=106	max_right_minus=105	max_right_plus=106	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.74	new_junction_read_count=103	polymorphism_frequency=4.157e-01	pos_hash_score=46	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=206	side_2_redundant=0	total_non_overlap_reads=91	unique_read_sequence=GTTTTTTAATCAAATTTTGGTTAAAAAATAAAAGGACAAGATGA
JC	185	.	Xen36_12	78	-1	Xen36_16	1	1	-12	alignment_overlap=-12	coverage_minus=34	coverage_plus=40	flanking_left=78	flanking_right=150	frequency=1	junction_possible_overlap_registers=136	key=Xen36_12__78__-1__Xen36_16__1__1__-12__ATGACAAATCGG__78__150__1__0	max_left=78	max_left_minus=77	max_left_plus=78	max_min_left=68	max_min_left_minus=68	max_min_left_plus=68	max_min_right=69	max_min_right_minus=69	max_min_right_plus=65	max_pos_hash_score=274	max_right=134	max_right_minus=133	max_right_plus=134	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.54	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=74	unique_read_sequence=ATGACAAATCGG
JC	186	.	Xen36_12	79	-1	Xen36_12	80	1	-21	alignment_overlap=-21	coverage_minus=68	coverage_plus=58	flanking_left=79	flanking_right=150	frequency=4.511e-01	junction_possible_overlap_registers=127	key=Xen36_12__79__-1__Xen36_12__80__1__-21__AAATGGATGCGATGAGCCGCA__79__150__1__0	max_left=79	max_left_minus=78	max_left_plus=79	max_min_left=63	max_min_left_minus=62	max_min_left_plus=63	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=256	max_right=130	max_right_minus=130	max_right_plus=129	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.97	new_junction_read_count=158	polymorphism_frequency=4.511e-01	pos_hash_score=67	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=224	side_2_redundant=0	total_non_overlap_reads=126	unique_read_sequence=AAATGGATGCGATGAGCCGCA
JC	187	.	Xen36_12	80	1	Xen36_12	357	-1	0	alignment_overlap=5	coverage_minus=14	coverage_plus=17	flanking_left=150	flanking_right=150	frequency=1.480e-01	junction_possible_overlap_registers=143	key=Xen36_12__80__1__Xen36_12__362__-1__5____150__150__0__0	max_left=146	max_left_minus=146	max_left_plus=37	max_min_left=43	max_min_left_minus=43	max_min_left_plus=37	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=288	max_right=142	max_right_minus=133	max_right_plus=142	neg_log10_pos_hash_p_value=11.0	new_junction_coverage=0.19	new_junction_read_count=34	polymorphism_frequency=1.480e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=224	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=175	side_2_redundant=0	total_non_overlap_reads=31
JC	188	.	Xen36_12	80	1	Xen36_15	37794	1	0	alignment_overlap=5	coverage_minus=7	coverage_plus=10	flanking_left=150	flanking_right=100	frequency=1.046e-01	junction_possible_overlap_registers=143	key=Xen36_12__80__1__Xen36_15__37789__1__5____150__100__0__0	max_left=146	max_left_minus=146	max_left_plus=73	max_min_left=73	max_min_left_minus=71	max_min_left_plus=73	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=288	max_right=99	max_right_minus=82	max_right_plus=99	neg_log10_pos_hash_p_value=15.4	new_junction_coverage=0.11	new_junction_read_count=20	polymorphism_frequency=1.046e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=5	side_1_possible_overlap_registers=148	side_1_read_count=224	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=143	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=17
JC	189	.	Xen36_12	80	1	Xen36_6	167090	1	-21	alignment_overlap=-21	coverage_minus=23	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=2.678e-01	junction_possible_overlap_registers=127	key=Xen36_12__80__1__Xen36_6__167090__1__-21__TGCGGCTCATCGCATCCATTT__150__150__0__0	max_left=87	max_left_minus=87	max_left_plus=48	max_min_left=48	max_min_left_minus=41	max_min_left_plus=48	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=256	max_right=127	max_right_minus=127	max_right_plus=126	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.38	new_junction_read_count=59	polymorphism_frequency=2.678e-01	pos_hash_score=32	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=224	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=152	side_2_redundant=0	total_non_overlap_reads=44	unique_read_sequence=TGCGGCTCATCGCATCCATTT
JC	190	.	Xen36_14	47623	1	Xen36_14	47761	-1	-3	alignment_overlap=-3	coverage_minus=21	coverage_plus=38	flanking_left=139	flanking_right=150	frequency=5.106e-01	junction_possible_overlap_registers=145	key=Xen36_14__47623__1__Xen36_14__47761__-1__-3__TCC__139__150__0__0	max_left=133	max_left_minus=133	max_left_plus=132	max_min_left=70	max_min_left_minus=66	max_min_left_plus=70	max_min_right=69	max_min_right_minus=37	max_min_right_plus=69	max_pos_hash_score=292	max_right=133	max_right_minus=133	max_right_plus=115	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.39	new_junction_read_count=69	polymorphism_frequency=5.106e-01	pos_hash_score=48	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=59	unique_read_sequence=TCC
JC	191	.	Xen36_14	47654	1	Xen36_14	47723	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=15	flanking_left=108	flanking_right=150	frequency=2.222e-01	junction_possible_overlap_registers=148	key=Xen36_14__47654__1__Xen36_14__47723__-1__0____108__150__0__0	max_left=99	max_left_minus=89	max_left_plus=99	max_min_left=73	max_min_left_minus=70	max_min_left_plus=73	max_min_right=71	max_min_right_minus=71	max_min_right_plus=65	max_pos_hash_score=298	max_right=146	max_right_minus=146	max_right_plus=101	neg_log10_pos_hash_p_value=12.0	new_junction_coverage=0.15	new_junction_read_count=28	polymorphism_frequency=2.222e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=138	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=26
JC	192	.	Xen36_15	1	1	Xen36_15	37857	-1	0	alignment_overlap=7	coverage_minus=12	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=4.423e-01	junction_possible_overlap_registers=141	key=Xen36_15__1__1__Xen36_15__37864__-1__7____150__150__0__0	max_left=70	max_left_minus=70	max_left_plus=70	max_min_left=68	max_min_left_minus=68	max_min_left_plus=61	max_min_right=69	max_min_right_minus=69	max_min_right_plus=67	max_pos_hash_score=284	max_right=120	max_right_minus=69	max_right_plus=120	neg_log10_pos_hash_p_value=20.2	new_junction_coverage=0.12	new_junction_read_count=23	polymorphism_frequency=4.423e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=17
JC	193	.	Xen36_15	37818	1	Xen36_16	1	1	-12	alignment_overlap=-12	coverage_minus=9	coverage_plus=13	flanking_left=76	flanking_right=150	frequency=1	junction_possible_overlap_registers=136	key=Xen36_15__37818__1__Xen36_16__1__1__-12__GTTTTAAATCGG__76__150__1__0	max_left=29	max_left_minus=29	max_left_plus=26	max_min_left=29	max_min_left_minus=29	max_min_left_plus=26	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=135	max_right_minus=131	max_right_plus=135	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.14	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22	unique_read_sequence=GTTTTAAATCGG
JC	194	.	Xen36_15	37818	1	Xen36_16	35256	1	-4	alignment_overlap=-4	coverage_minus=16	coverage_plus=9	flanking_left=76	flanking_right=150	frequency=1.922e-01	junction_possible_overlap_registers=144	key=Xen36_15__37818__1__Xen36_16__35256__1__-4__TTAA__76__150__1__0	max_left=31	max_left_minus=31	max_left_plus=23	max_min_left=31	max_min_left_minus=31	max_min_left_plus=23	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=290	max_right=145	max_right_minus=145	max_right_plus=140	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.15	new_junction_read_count=25	polymorphism_frequency=1.922e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=25	unique_read_sequence=TTAA
JC	195	.	Xen36_16	1	1	Xen36_16	35410	-1	-8	alignment_overlap=-8	coverage_minus=31	coverage_plus=34	flanking_left=150	flanking_right=150	frequency=7.242e-01	junction_possible_overlap_registers=140	key=Xen36_16__1__1__Xen36_16__35410__-1__-8__CCAATATA__150__150__0__0	max_left=77	max_left_minus=65	max_left_plus=77	max_min_left=69	max_min_left_minus=65	max_min_left_plus=69	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=282	max_right=139	max_right_minus=137	max_right_plus=139	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.53	new_junction_read_count=77	polymorphism_frequency=7.242e-01	pos_hash_score=46	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.41	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=65	unique_read_sequence=CCAATATA
JC	196	.	Xen36_16	77	-1	Xen36_16	1642	1	-24	alignment_overlap=-24	coverage_minus=10	coverage_plus=14	flanking_left=77	flanking_right=150	frequency=2.646e-01	junction_possible_overlap_registers=124	key=Xen36_16__77__-1__Xen36_16__1642__1__-24__TGATTATTAATTAACTGAATAAGC__77__150__0__0	max_left=77	max_left_minus=62	max_left_plus=77	max_min_left=62	max_min_left_minus=62	max_min_left_plus=61	max_min_right=53	max_min_right_minus=0	max_min_right_plus=53	max_pos_hash_score=250	max_right=82	max_right_minus=82	max_right_plus=76	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.23	new_junction_read_count=30	polymorphism_frequency=2.646e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=TGATTATTAATTAACTGAATAAGC
JC	197	.	Xen36_16	244	-1	Xen36_34	443	-1	-33	alignment_overlap=-33	coverage_minus=44	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=7.071e-01	junction_possible_overlap_registers=115	key=Xen36_16__244__-1__Xen36_34__443__-1__-33__TTACGATTTAATTTTTATATTTAGCAAAATAAT__150__150__0__0	max_left=115	max_left_minus=115	max_left_plus=115	max_min_left=56	max_min_left_minus=56	max_min_left_plus=52	max_min_right=56	max_min_right_minus=54	max_min_right_plus=56	max_pos_hash_score=232	max_right=115	max_right_minus=115	max_right_plus=102	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.90	new_junction_read_count=91	polymorphism_frequency=7.071e-01	pos_hash_score=52	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=79	unique_read_sequence=TTACGATTTAATTTTTATATTTAGCAAAATAAT
JC	198	.	Xen36_17	23646	1	Xen36_22	1	1	0	alignment_overlap=1	coverage_minus=127	coverage_plus=145	flanking_left=76	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen36_17__23645__1__Xen36_22__1__1__1____76__150__1__0	max_left=76	max_left_minus=75	max_left_plus=76	max_min_left=74	max_min_left_minus=73	max_min_left_plus=74	max_min_right=74	max_min_right_minus=74	max_min_right_plus=74	max_pos_hash_score=296	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.46	new_junction_read_count=299	polymorphism_frequency=1.000e+00	pos_hash_score=95	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=272
JC	199	.	Xen36_19	1	1	Xen36_19	8034	-1	0	alignment_overlap=55	coverage_minus=398	coverage_plus=519	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=93	key=Xen36_19__1__1__Xen36_19__8089__-1__55____150__150__0__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=47	max_min_left_minus=47	max_min_left_plus=47	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=188	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.93	new_junction_read_count=929	polymorphism_frequency=1.000e+00	pos_hash_score=170	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=55	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=93	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=917
JC	200	.	Xen36_19	5440	-1	Xen36_19	5445	-1	0	alignment_overlap=11	coverage_minus=4	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=1.805e-02	junction_possible_overlap_registers=137	key=Xen36_19__5440__-1__Xen36_19__5456__-1__11____150__150__0__0	max_left=123	max_left_minus=119	max_left_plus=123	max_min_left=68	max_min_left_minus=38	max_min_left_plus=68	max_min_right=51	max_min_right_minus=43	max_min_right_plus=51	max_pos_hash_score=276	max_right=122	max_right_minus=122	max_right_plus=103	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.01	new_junction_read_count=17	polymorphism_frequency=1.805e-02	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=11	side_1_possible_overlap_registers=148	side_1_read_count=1014	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=137	side_2_read_count=911	side_2_redundant=0	total_non_overlap_reads=17
JC	201	.	Xen36_2	16433	-1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=14	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=4.448e-01	junction_possible_overlap_registers=133	key=Xen36_2__16433__-1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=23	max_left_minus=23	max_left_plus=21	max_min_left=23	max_min_left_minus=23	max_min_left_plus=21	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.16	new_junction_read_count=27	polymorphism_frequency=4.448e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=TGACTAGAGTTGAAA
JC	202	.	Xen36_2	16492	-1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=14	coverage_plus=13	flanking_left=150	flanking_right=150	frequency=4.515e-01	junction_possible_overlap_registers=133	key=Xen36_2__16492__-1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=23	max_left_minus=23	max_left_plus=21	max_min_left=23	max_min_left_minus=23	max_min_left_plus=21	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.16	new_junction_read_count=27	polymorphism_frequency=4.515e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=TGACTAGAGTTGAAA
JC	203	.	Xen36_2	16552	-1	Xen36_5	192873	-1	-14	alignment_overlap=-14	coverage_minus=15	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=4.658e-01	junction_possible_overlap_registers=134	key=Xen36_2__16552__-1__Xen36_5__192873__-1__-14__GACTAGAGTTGAAA__150__150__0__0	max_left=26	max_left_minus=26	max_left_plus=22	max_min_left=26	max_min_left_minus=26	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=270	max_right=135	max_right_minus=131	max_right_plus=135	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.18	new_junction_read_count=30	polymorphism_frequency=4.658e-01	pos_hash_score=17	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30	unique_read_sequence=GACTAGAGTTGAAA
JC	204	.	Xen36_2	107283	-1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=5	coverage_plus=4	flanking_left=150	flanking_right=150	frequency=1.726e-01	junction_possible_overlap_registers=133	key=Xen36_2__107283__-1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=12	max_left_minus=12	max_left_plus=4	max_min_left=12	max_min_left_minus=12	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=12.5	new_junction_coverage=0.05	new_junction_read_count=9	polymorphism_frequency=1.726e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=96	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TGACTAGAGTTGAAA
JC	205	.	Xen36_2	107343	-1	Xen36_5	192873	-1	-12	alignment_overlap=-12	coverage_minus=6	coverage_plus=8	flanking_left=150	flanking_right=150	frequency=2.217e-01	junction_possible_overlap_registers=136	key=Xen36_2__107343__-1__Xen36_5__192873__-1__-12__CTAGAGTTGAAA__150__150__0__0	max_left=15	max_left_minus=15	max_left_plus=7	max_min_left=15	max_min_left_minus=15	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=274	max_right=137	max_right_minus=136	max_right_plus=137	neg_log10_pos_hash_p_value=11.0	new_junction_coverage=0.08	new_junction_read_count=14	polymorphism_frequency=2.217e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=CTAGAGTTGAAA
JC	206	.	Xen36_2	226830	1	Xen36_5	192873	-1	-15	alignment_overlap=-15	coverage_minus=28	coverage_plus=23	flanking_left=150	flanking_right=150	frequency=4.924e-01	junction_possible_overlap_registers=133	key=Xen36_2__226830__1__Xen36_5__192873__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=57	max_left_minus=56	max_left_plus=57	max_min_left=57	max_min_left_minus=56	max_min_left_plus=57	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=268	max_right=133	max_right_minus=131	max_right_plus=133	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.30	new_junction_read_count=51	polymorphism_frequency=4.924e-01	pos_hash_score=31	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=117	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=51	unique_read_sequence=TGACTAGAGTTGAAA
JC	207	.	Xen36_2	226887	-1	Xen36_4	158370	1	-56	alignment_overlap=-56	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.647e-02	junction_possible_overlap_registers=92	key=Xen36_2__226887__-1__Xen36_4__158370__1__-56__TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC__150__150__0__0	max_left=38	max_left_minus=38	max_left_plus=37	max_min_left=38	max_min_left_minus=38	max_min_left_plus=37	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=186	max_right=61	max_right_minus=61	max_right_plus=57	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.647e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=164	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC
JC	208	.	Xen36_2	226887	-1	Xen36_4	158428	1	-56	alignment_overlap=-56	coverage_minus=6	coverage_plus=1	flanking_left=150	flanking_right=150	frequency=7.673e-02	junction_possible_overlap_registers=92	key=Xen36_2__226887__-1__Xen36_4__158428__1__-56__TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC__150__150__0__0	max_left=38	max_left_minus=38	max_left_plus=37	max_min_left=38	max_min_left_minus=38	max_min_left_plus=37	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=186	max_right=61	max_right_minus=61	max_right_plus=57	neg_log10_pos_hash_p_value=9.8	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=7.673e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC
JC	209	.	Xen36_2	401342	-1	Xen36_8	61	1	0	alignment_overlap=60	coverage_minus=59	coverage_plus=31	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=88	key=Xen36_2__401342__-1__Xen36_8__1__1__60____150__150__0__0	max_left=88	max_left_minus=88	max_left_plus=83	max_min_left=44	max_min_left_minus=44	max_min_left_plus=41	max_min_right=43	max_min_right_minus=43	max_min_right_plus=35	max_pos_hash_score=178	max_right=86	max_right_minus=86	max_right_plus=82	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.18	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=60	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=88	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	210	.	Xen36_21	1	1	Xen36_31	1147	-1	0	alignment_overlap=62	coverage_minus=47	coverage_plus=52	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=86	key=Xen36_21__1__1__Xen36_31__1209__-1__62____150__150__0__0	max_left=87	max_left_minus=87	max_left_plus=87	max_min_left=42	max_min_left_minus=37	max_min_left_plus=42	max_min_right=42	max_min_right_minus=39	max_min_right_plus=42	max_pos_hash_score=174	max_right=73	max_right_minus=72	max_right_plus=73	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.52	new_junction_read_count=123	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=62	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=99
JC	211	.	Xen36_22	1	1	Xen36_29	1296	-1	0	alignment_overlap=8	coverage_minus=92	coverage_plus=62	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=140	key=Xen36_22__1__1__Xen36_29__1304__-1__8____150__150__0__0	max_left=141	max_left_minus=141	max_left_plus=140	max_min_left=69	max_min_left_minus=67	max_min_left_plus=69	max_min_right=71	max_min_right_minus=71	max_min_right_plus=69	max_pos_hash_score=282	max_right=141	max_right_minus=141	max_right_plus=140	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.22	new_junction_read_count=154	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=154
JC	212	.	Xen36_23	1	1	Xen36_23	216	-1	0	alignment_overlap=7	coverage_minus=127	coverage_plus=142	flanking_left=150	flanking_right=150	frequency=4.887e-01	junction_possible_overlap_registers=141	key=Xen36_23__1__1__Xen36_23__223__-1__7____150__150__0__0	max_left=142	max_left_minus=142	max_left_plus=134	max_min_left=64	max_min_left_minus=62	max_min_left_plus=64	max_min_right=62	max_min_right_minus=62	max_min_right_plus=35	max_pos_hash_score=284	max_right=142	max_right_minus=142	max_right_plus=142	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.53	new_junction_read_count=282	polymorphism_frequency=4.887e-01	pos_hash_score=108	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=590	side_2_redundant=0	total_non_overlap_reads=269
JC	213	.	Xen36_23	1	1	Xen36_30	1165	-1	0	alignment_overlap=53	coverage_minus=214	coverage_plus=211	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=95	key=Xen36_23__1__1__Xen36_30__1218__-1__53____150__150__0__0	max_left=92	max_left_minus=92	max_left_plus=84	max_min_left=48	max_min_left_minus=48	max_min_left_plus=47	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=192	max_right=96	max_right_minus=96	max_right_plus=96	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.73	new_junction_read_count=428	polymorphism_frequency=1.000e+00	pos_hash_score=106	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=53	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=95	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=425
JC	214	.	Xen36_23	1	1	Xen36_30	1218	-1	-1	alignment_overlap=-1	coverage_minus=206	coverage_plus=201	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen36_23__1__1__Xen36_30__1218__-1__-1__A__150__150__0__0	max_left=137	max_left_minus=129	max_left_plus=137	max_min_left=67	max_min_left_minus=67	max_min_left_plus=65	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=296	max_right=148	max_right_minus=148	max_right_plus=148	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.45	new_junction_read_count=410	polymorphism_frequency=1.000e+00	pos_hash_score=111	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=407	unique_read_sequence=A
JC	215	.	Xen36_23	1	1	Xen36_30	1218	-1	-1	alignment_overlap=-1	coverage_minus=140	coverage_plus=125	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen36_23__1__1__Xen36_30__1218__-1__-1__G__150__150__0__0	max_left=143	max_left_minus=143	max_left_plus=141	max_min_left=72	max_min_left_minus=70	max_min_left_plus=72	max_min_right=71	max_min_right_minus=40	max_min_right_plus=71	max_pos_hash_score=296	max_right=138	max_right_minus=138	max_right_plus=138	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.31	new_junction_read_count=283	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=265	unique_read_sequence=G
JC	216	.	Xen36_23	215	-1	Xen36_30	1058	1	-1	alignment_overlap=-1	coverage_minus=98	coverage_plus=103	flanking_left=150	flanking_right=150	frequency=2.419e-01	junction_possible_overlap_registers=147	key=Xen36_23__215__-1__Xen36_30__1058__1__-1__T__150__150__0__0	max_left=143	max_left_minus=143	max_left_plus=50	max_min_left=50	max_min_left_minus=41	max_min_left_plus=50	max_min_right=29	max_min_right_minus=29	max_min_right_plus=0	max_pos_hash_score=296	max_right=148	max_right_minus=147	max_right_plus=148	neg_log10_pos_hash_p_value=11.9	new_junction_coverage=0.24	new_junction_read_count=219	polymorphism_frequency=2.419e-01	pos_hash_score=61	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=642	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=740	side_2_redundant=0	total_non_overlap_reads=201	unique_read_sequence=T
JC	217	.	Xen36_23	223	-1	Xen36_30	1065	1	0	alignment_overlap=32	coverage_minus=139	coverage_plus=120	flanking_left=150	flanking_right=150	frequency=3.568e-01	junction_possible_overlap_registers=116	key=Xen36_23__223__-1__Xen36_30__1033__1__32____150__150__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=53	max_min_left_minus=53	max_min_left_plus=18	max_min_right=45	max_min_right_minus=43	max_min_right_plus=45	max_pos_hash_score=234	max_right=116	max_right_minus=115	max_right_plus=116	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.38	new_junction_read_count=271	polymorphism_frequency=3.568e-01	pos_hash_score=101	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=32	side_1_possible_overlap_registers=148	side_1_read_count=619	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=116	side_2_read_count=492	side_2_redundant=0	total_non_overlap_reads=259
JC	218	.	Xen36_23	4673	1	Xen36_29	1304	-1	0	alignment_overlap=2	coverage_minus=136	coverage_plus=112	flanking_left=75	flanking_right=150	frequency=1	junction_possible_overlap_registers=146	key=Xen36_23__4671__1__Xen36_29__1304__-1__2____75__150__1__0	max_left=75	max_left_minus=74	max_left_plus=75	max_min_left=73	max_min_left_minus=72	max_min_left_plus=73	max_min_right=74	max_min_right_minus=74	max_min_right_plus=74	max_pos_hash_score=294	max_right=147	max_right_minus=147	max_right_plus=146	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.47	new_junction_read_count=301	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=248
JC	219	.	Xen36_25	4101	1	Xen36_30	338	-1	-19	alignment_overlap=-19	coverage_minus=644	coverage_plus=458	flanking_left=77	flanking_right=150	frequency=7.233e-01	junction_possible_overlap_registers=129	key=Xen36_25__4101__1__Xen36_30__338__-1__-19__AGTGGTACAGGTAACGTCA__77__150__0__0	max_left=53	max_left_minus=53	max_left_plus=53	max_min_left=53	max_min_left_minus=53	max_min_left_plus=53	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=260	max_right=130	max_right_minus=130	max_right_plus=130	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=1.35	new_junction_read_count=1111	polymorphism_frequency=7.233e-01	pos_hash_score=101	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=261	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=714	side_2_redundant=0	total_non_overlap_reads=1102	unique_read_sequence=AGTGGTACAGGTAACGTCA
JC	220	.	Xen36_27	1	1	Xen36_32	1	1	-1	alignment_overlap=-1	coverage_minus=252	coverage_plus=181	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen36_27__1__1__Xen36_32__1__1__-1__C__150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=147	max_min_left=74	max_min_left_minus=74	max_min_left_plus=74	max_min_right=73	max_min_right_minus=73	max_min_right_plus=72	max_pos_hash_score=296	max_right=148	max_right_minus=147	max_right_plus=148	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.54	new_junction_read_count=436	polymorphism_frequency=1.000e+00	pos_hash_score=185	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=433	unique_read_sequence=C
JC	221	.	Xen36_27	1	1	Xen36_32	1	1	-1	alignment_overlap=-1	coverage_minus=267	coverage_plus=194	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=147	key=Xen36_27__1__1__Xen36_32__1__1__-1__T__150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=74	max_min_left_minus=74	max_min_left_plus=73	max_min_right=74	max_min_right_minus=73	max_min_right_plus=74	max_pos_hash_score=296	max_right=148	max_right_minus=147	max_right_plus=148	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.58	new_junction_read_count=463	polymorphism_frequency=1.000e+00	pos_hash_score=181	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=461	unique_read_sequence=T
JC	222	.	Xen36_28	1675	-1	Xen36_9	19	1	0	alignment_overlap=18	coverage_minus=132	coverage_plus=54	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=130	key=Xen36_28__1675__-1__Xen36_9__1__1__18____150__150__0__0	max_left=131	max_left_minus=131	max_left_plus=131	max_min_left=65	max_min_left_minus=65	max_min_left_plus=52	max_min_right=65	max_min_right_minus=62	max_min_right_plus=65	max_pos_hash_score=262	max_right=131	max_right_minus=131	max_right_plus=124	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.47	new_junction_read_count=190	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=18	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=130	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=186
JC	223	.	Xen36_3	1	1	Xen36_4	133115	1	0	alignment_overlap=0	coverage_minus=28	coverage_plus=45	flanking_left=150	flanking_right=150	frequency=5.875e-01	junction_possible_overlap_registers=148	key=Xen36_3__1__1__Xen36_4__133115__1__0____150__150__0__0	max_left=148	max_left_minus=148	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=298	max_right=49	max_right_minus=49	max_right_plus=49	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.45	new_junction_read_count=94	polymorphism_frequency=5.875e-01	pos_hash_score=38	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=73
JC	224	.	Xen36_3	163762	1	Xen36_5	192873	-1	-17	alignment_overlap=-17	coverage_minus=9	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.488e-01	junction_possible_overlap_registers=131	key=Xen36_3__163762__1__Xen36_5__192873__-1__-17__CCTGACTAGAGTTGAAA__150__150__0__0	max_left=15	max_left_minus=15	max_left_plus=12	max_min_left=15	max_min_left_minus=15	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=264	max_right=131	max_right_minus=131	max_right_plus=131	neg_log10_pos_hash_p_value=16.8	new_junction_coverage=0.07	new_junction_read_count=14	polymorphism_frequency=1.488e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=181	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=CCTGACTAGAGTTGAAA
JC	225	.	Xen36_30	1033	1	Xen36_30	1194	-1	0	alignment_overlap=24	coverage_minus=179	coverage_plus=146	flanking_left=150	flanking_right=150	frequency=5.723e-01	junction_possible_overlap_registers=124	key=Xen36_30__1033__1__Xen36_30__1218__-1__24____150__150__0__0	max_left=124	max_left_minus=124	max_left_plus=123	max_min_left=62	max_min_left_minus=62	max_min_left_plus=53	max_min_right=46	max_min_right_minus=46	max_min_right_plus=35	max_pos_hash_score=250	max_right=114	max_right_minus=114	max_right_plus=114	neg_log10_pos_hash_p_value=12.6	new_junction_coverage=0.32	new_junction_read_count=342	polymorphism_frequency=5.723e-01	pos_hash_score=115	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=24	side_1_possible_overlap_registers=148	side_1_read_count=610	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=124	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=325
JC	226	.	Xen36_30	1033	1	Xen36_30	1218	-1	-30	alignment_overlap=-30	coverage_minus=187	coverage_plus=182	flanking_left=150	flanking_right=150	frequency=6.184e-01	junction_possible_overlap_registers=118	key=Xen36_30__1033__1__Xen36_30__1218__-1__-30__CAAAAGTTAAACGAAGCTAATAATGAGAGA__150__150__0__0	max_left=119	max_left_minus=119	max_left_plus=119	max_min_left=57	max_min_left_minus=57	max_min_left_plus=57	max_min_right=59	max_min_right_minus=58	max_min_right_plus=59	max_pos_hash_score=238	max_right=119	max_right_minus=119	max_right_plus=119	neg_log10_pos_hash_p_value=13.4	new_junction_coverage=0.39	new_junction_read_count=394	polymorphism_frequency=6.184e-01	pos_hash_score=106	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=610	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=369	unique_read_sequence=CAAAAGTTAAACGAAGCTAATAATGAGAGA
JC	227	.	Xen36_31	1209	-1	Xen36_5	64	1	0	alignment_overlap=63	coverage_minus=77	coverage_plus=105	flanking_left=150	flanking_right=150	frequency=1	junction_possible_overlap_registers=85	key=Xen36_31__1209__-1__Xen36_5__1__1__63____150__150__0__0	max_left=86	max_left_minus=86	max_left_plus=86	max_min_left=43	max_min_left_minus=41	max_min_left_plus=43	max_min_right=41	max_min_right_minus=41	max_min_right_plus=40	max_pos_hash_score=172	max_right=83	max_right_minus=83	max_right_plus=83	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=0.73	new_junction_read_count=187	polymorphism_frequency=1.000e+00	pos_hash_score=88	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=63	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=85	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=182
JC	228	.	Xen36_34	1	1	Xen36_6	134	-1	-19	alignment_overlap=-19	coverage_minus=50	coverage_plus=41	flanking_left=150	flanking_right=134	frequency=6.357e-01	junction_possible_overlap_registers=129	key=Xen36_34__1__1__Xen36_6__134__-1__-19__CCATTTATTTTTACACGAT__150__134__0__0	max_left=129	max_left_minus=128	max_left_plus=129	max_min_left=52	max_min_left_minus=52	max_min_left_plus=49	max_min_right=56	max_min_right_minus=56	max_min_right_plus=49	max_pos_hash_score=260	max_right=129	max_right_minus=129	max_right_plus=128	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.75	new_junction_read_count=92	polymorphism_frequency=6.357e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=121	side_2_redundant=0	total_non_overlap_reads=91	unique_read_sequence=CCATTTATTTTTACACGAT
JC	229	.	Xen36_34	1	1	Xen36_9	33	-1	-61	alignment_overlap=-61	coverage_minus=14	coverage_plus=8	flanking_left=150	flanking_right=33	frequency=1	junction_possible_overlap_registers=87	key=Xen36_34__1__1__Xen36_9__33__-1__-61__CCATTTATTTTTACACGATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCA__150__33__0__1	max_left=74	max_left_minus=70	max_left_plus=74	max_min_left=30	max_min_left_minus=30	max_min_left_plus=0	max_min_right=33	max_min_right_minus=25	max_min_right_plus=33	max_pos_hash_score=176	max_right=33	max_right_minus=32	max_right_plus=33	neg_log10_pos_hash_p_value=11.1	new_junction_coverage=0.26	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22	unique_read_sequence=CCATTTATTTTTACACGATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCA
JC	230	.	Xen36_4	1	1	Xen36_4	133115	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=3.889e-01	junction_possible_overlap_registers=148	key=Xen36_4__1__1__Xen36_4__133115__1__0____150__150__0__0	max_left=143	max_left_minus=143	max_left_plus=135	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=298	max_right=50	max_right_minus=50	max_right_plus=50	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.20	new_junction_read_count=42	polymorphism_frequency=3.889e-01	pos_hash_score=26	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=34
JC	231	.	Xen36_4	158370	1	Xen36_5	2080	1	-56	alignment_overlap=-56	coverage_minus=33	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=3.308e-01	junction_possible_overlap_registers=92	key=Xen36_4__158370__1__Xen36_5__2080__1__-56__GCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=27	max_left_minus=27	max_left_plus=24	max_min_left=27	max_min_left_minus=27	max_min_left_plus=24	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=186	max_right=92	max_right_minus=92	max_right_plus=91	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.40	new_junction_read_count=55	polymorphism_frequency=3.308e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=164	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=194	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=GCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	232	.	Xen36_4	158428	1	Xen36_5	2080	1	-56	alignment_overlap=-56	coverage_minus=33	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=3.314e-01	junction_possible_overlap_registers=92	key=Xen36_4__158428__1__Xen36_5__2080__1__-56__GCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA__150__150__0__0	max_left=27	max_left_minus=27	max_left_plus=24	max_min_left=27	max_min_left_minus=27	max_min_left_plus=24	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=186	max_right=92	max_right_minus=92	max_right_plus=91	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.40	new_junction_read_count=55	polymorphism_frequency=3.314e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=194	side_2_redundant=0	total_non_overlap_reads=52	unique_read_sequence=GCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
JC	233	.	Xen36_5	2080	1	Xen36_9	79344	-1	-56	alignment_overlap=-56	coverage_minus=3	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1.984e-01	junction_possible_overlap_registers=92	key=Xen36_5__2080__1__Xen36_9__79344__-1__-56__TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC__150__150__0__0	max_left=92	max_left_minus=91	max_left_plus=92	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=11	max_min_right_plus=12	max_pos_hash_score=186	max_right=12	max_right_minus=11	max_right_plus=12	neg_log10_pos_hash_p_value=12.4	new_junction_coverage=0.19	new_junction_read_count=25	polymorphism_frequency=1.984e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=194	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=131	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGC
JC	234	.	Xen36_5	2080	1	Xen36_9	90173	-1	-33	alignment_overlap=-33	coverage_minus=3	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=1.710e-01	junction_possible_overlap_registers=115	key=Xen36_5__2080__1__Xen36_9__90173__-1__-33__TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT__150__150__0__0	max_left=92	max_left_minus=91	max_left_plus=92	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=35	max_min_right_minus=34	max_min_right_plus=35	max_pos_hash_score=232	max_right=35	max_right_minus=34	max_right_plus=35	neg_log10_pos_hash_p_value=15.1	new_junction_coverage=0.15	new_junction_read_count=25	polymorphism_frequency=1.710e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=194	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
JC	235	.	Xen36_5	2080	1	Xen36_9	90265	-1	-55	alignment_overlap=-55	coverage_minus=3	coverage_plus=21	flanking_left=150	flanking_right=150	frequency=2.012e-01	junction_possible_overlap_registers=93	key=Xen36_5__2080__1__Xen36_9__90265__-1__-55__TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGG__150__150__0__0	max_left=92	max_left_minus=91	max_left_plus=92	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=12	max_min_right_plus=13	max_pos_hash_score=188	max_right=13	max_right_minus=12	max_right_plus=13	neg_log10_pos_hash_p_value=12.5	new_junction_coverage=0.19	new_junction_read_count=25	polymorphism_frequency=2.012e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=194	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=122	side_2_redundant=0	total_non_overlap_reads=24	unique_read_sequence=TGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGG
JC	236	.	Xen36_5	192873	-1	Xen36_6	26831	-1	-15	alignment_overlap=-15	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.712e-01	junction_possible_overlap_registers=133	key=Xen36_5__192873__-1__Xen36_6__26831__-1__-15__TTTCAACTCTAGTCA__150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=131	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=4	max_min_right_plus=12	max_pos_hash_score=268	max_right=12	max_right_minus=4	max_right_plus=12	neg_log10_pos_hash_p_value=12.8	new_junction_coverage=0.05	new_junction_read_count=9	polymorphism_frequency=1.712e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=97	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TTTCAACTCTAGTCA
JC	237	.	Xen36_5	192873	-1	Xen36_6	128584	-1	-15	alignment_overlap=-15	coverage_minus=12	coverage_plus=19	flanking_left=150	flanking_right=150	frequency=3.897e-01	junction_possible_overlap_registers=133	key=Xen36_5__192873__-1__Xen36_6__128584__-1__-15__TTTCAACTCTAGTCA__150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=131	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=38	max_min_right_minus=34	max_min_right_plus=38	max_pos_hash_score=268	max_right=38	max_right_minus=34	max_right_plus=38	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.18	new_junction_read_count=33	polymorphism_frequency=3.897e-01	pos_hash_score=20	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=31	unique_read_sequence=TTTCAACTCTAGTCA
JC	238	.	Xen36_5	192873	-1	Xen36_7	74427	1	-15	alignment_overlap=-15	coverage_minus=36	coverage_plus=36	flanking_left=150	flanking_right=150	frequency=5.125e-01	junction_possible_overlap_registers=133	key=Xen36_5__192873__-1__Xen36_7__74427__1__-15__TTTCAACTCTAGTCA__150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=131	max_min_left=63	max_min_left_minus=60	max_min_left_plus=63	max_min_right=64	max_min_right_minus=19	max_min_right_plus=64	max_pos_hash_score=268	max_right=105	max_right_minus=105	max_right_plus=105	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.36	new_junction_read_count=77	polymorphism_frequency=5.125e-01	pos_hash_score=46	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=72	unique_read_sequence=TTTCAACTCTAGTCA
JC	239	.	Xen36_5	192873	-1	Xen36_9	79285	-1	-16	alignment_overlap=-16	coverage_minus=4	coverage_plus=5	flanking_left=150	flanking_right=150	frequency=1.276e-01	junction_possible_overlap_registers=132	key=Xen36_5__192873__-1__Xen36_9__79285__-1__-16__TTTCAACTCTAGTCAG__150__150__0__0	max_left=133	max_left_minus=133	max_left_plus=131	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=3	max_min_right_plus=11	max_pos_hash_score=266	max_right=11	max_right_minus=3	max_right_plus=11	neg_log10_pos_hash_p_value=18.2	new_junction_coverage=0.05	new_junction_read_count=9	polymorphism_frequency=1.276e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=138	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=TTTCAACTCTAGTCAG
JC	240	.	Xen36_6	81016	1	Xen36_6	123458	-1	0	alignment_overlap=14	coverage_minus=10	coverage_plus=14	flanking_left=150	flanking_right=150	frequency=1.569e-01	junction_possible_overlap_registers=134	key=Xen36_6__81016__1__Xen36_6__123472__-1__14____150__150__0__0	max_left=134	max_left_minus=134	max_left_plus=134	max_min_left=67	max_min_left_minus=67	max_min_left_plus=62	max_min_right=65	max_min_right_minus=65	max_min_right_plus=55	max_pos_hash_score=270	max_right=134	max_right_minus=134	max_right_plus=121	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.15	new_junction_read_count=24	polymorphism_frequency=1.569e-01	pos_hash_score=19	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=14	side_1_possible_overlap_registers=148	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=134	side_2_read_count=142	side_2_redundant=0	total_non_overlap_reads=24
JC	241	.	Xen36_6	152517	1	Xen36_9	90205	1	0	alignment_overlap=7	coverage_minus=14	coverage_plus=3	flanking_left=150	flanking_right=150	frequency=1.283e-01	junction_possible_overlap_registers=141	key=Xen36_6__152517__1__Xen36_9__90198__1__7____150__150__0__0	max_left=22	max_left_minus=22	max_left_plus=22	max_min_left=22	max_min_left_minus=22	max_min_left_plus=22	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=141	max_right_minus=141	max_right_plus=131	neg_log10_pos_hash_p_value=12.7	new_junction_coverage=0.10	new_junction_read_count=17	polymorphism_frequency=1.283e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.72	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=17
JC	242	.	Xen36_7	74427	1	Xen36_9	41772	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=27	flanking_left=150	flanking_right=150	frequency=2.489e-01	junction_possible_overlap_registers=148	key=Xen36_7__74427__1__Xen36_9__41772__-1__0____150__150__0__0	max_left=105	max_left_minus=105	max_left_plus=105	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=75	max_min_right_minus=72	max_min_right_plus=75	max_pos_hash_score=298	max_right=78	max_right_minus=78	max_right_plus=75	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.25	new_junction_read_count=55	polymorphism_frequency=2.489e-01	pos_hash_score=32	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=169	side_2_redundant=0	total_non_overlap_reads=50
JC	243	.	Xen36_7	74427	1	Xen36_9	124450	-1	-15	alignment_overlap=-15	coverage_minus=36	coverage_plus=35	flanking_left=150	flanking_right=150	frequency=5.092e-01	junction_possible_overlap_registers=133	key=Xen36_7__74427__1__Xen36_9__124450__-1__-15__TGACTAGAGTTGAAA__150__150__0__0	max_left=105	max_left_minus=105	max_left_plus=105	max_min_left=64	max_min_left_minus=64	max_min_left_plus=12	max_min_right=63	max_min_right_minus=63	max_min_right_plus=60	max_pos_hash_score=268	max_right=133	max_right_minus=132	max_right_plus=133	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.39	new_junction_read_count=76	polymorphism_frequency=5.092e-01	pos_hash_score=44	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=71	unique_read_sequence=TGACTAGAGTTGAAA
JC	244	.	Xen36_9	79344	-1	Xen36_9	90205	1	0	alignment_overlap=7	coverage_minus=10	coverage_plus=0	flanking_left=150	flanking_right=150	frequency=7.818e-02	junction_possible_overlap_registers=141	key=Xen36_9__79344__-1__Xen36_9__90198__1__7____150__150__0__0	max_left=10	max_left_minus=10	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=284	max_right=141	max_right_minus=141	max_right_plus=0	neg_log10_pos_hash_p_value=21.5	new_junction_coverage=0.06	new_junction_read_count=10	polymorphism_frequency=7.818e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=7	side_1_possible_overlap_registers=148	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=141	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=10
JC	245	.	Xen36_9	90151	-1	Xen36_9	90206	1	0	alignment_overlap=8	coverage_minus=25	coverage_plus=18	flanking_left=150	flanking_right=150	frequency=2.745e-01	junction_possible_overlap_registers=140	key=Xen36_9__90151__-1__Xen36_9__90198__1__8____150__150__0__0	max_left=60	max_left_minus=59	max_left_plus=60	max_min_left=60	max_min_left_minus=59	max_min_left_plus=60	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=282	max_right=140	max_right_minus=140	max_right_plus=130	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.24	new_junction_read_count=43	polymorphism_frequency=2.745e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=8	side_1_possible_overlap_registers=148	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=140	side_2_read_count=110	side_2_redundant=0	total_non_overlap_reads=43
JC	246	.	Xen36_9	90198	1	Xen36_9	90277	-1	-40	alignment_overlap=-40	coverage_minus=23	coverage_plus=15	flanking_left=150	flanking_right=150	frequency=3.358e-01	junction_possible_overlap_registers=108	key=Xen36_9__90198__1__Xen36_9__90277__-1__-40__CAACACAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG__150__150__0__0	max_left=109	max_left_minus=109	max_left_plus=101	max_min_left=26	max_min_left_minus=25	max_min_left_plus=26	max_min_right=20	max_min_right_minus=20	max_min_right_plus=18	max_pos_hash_score=218	max_right=102	max_right_minus=102	max_right_plus=100	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.27	new_junction_read_count=38	polymorphism_frequency=3.358e-01	pos_hash_score=21	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.54	side_1_overlap=0	side_1_possible_overlap_registers=148	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.54	side_2_overlap=0	side_2_possible_overlap_registers=148	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=38	unique_read_sequence=CAACACAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG
UN	247	.	Xen36_1	648837	648837
UN	248	.	Xen36_10	106195	106197
UN	249	.	Xen36_11	1	1
UN	250	.	Xen36_11	74738	74743
UN	251	.	Xen36_12	52431	52431
UN	252	.	Xen36_13	1	6
UN	253	.	Xen36_13	50480	50485
UN	254	.	Xen36_14	1	1
UN	255	.	Xen36_14	47760	47761
UN	256	.	Xen36_15	1	4
UN	257	.	Xen36_15	37893	37893
UN	258	.	Xen36_16	187	187
UN	259	.	Xen36_16	36148	36148
UN	260	.	Xen36_17	1	1
UN	261	.	Xen36_17	23721	23721
UN	262	.	Xen36_18	1	2
UN	263	.	Xen36_18	20960	20963
UN	264	.	Xen36_19	8085	8089
UN	265	.	Xen36_2	1	4
UN	266	.	Xen36_20	1	1
UN	267	.	Xen36_20	7889	7889
UN	268	.	Xen36_21	7351	7351
UN	269	.	Xen36_22	1	1
UN	270	.	Xen36_22	5249	5249
UN	271	.	Xen36_23	4745	4747
UN	272	.	Xen36_24	1	1
UN	273	.	Xen36_24	4540	4540
UN	274	.	Xen36_25	1	1
UN	275	.	Xen36_25	4177	4177
UN	276	.	Xen36_26	1	6
UN	277	.	Xen36_26	3514	3519
UN	278	.	Xen36_27	2102	2102
UN	279	.	Xen36_28	1	3
UN	280	.	Xen36_29	1	1
UN	281	.	Xen36_29	1304	1304
UN	282	.	Xen36_3	1	1
UN	283	.	Xen36_3	250908	250908
UN	284	.	Xen36_30	1	1
UN	285	.	Xen36_30	1218	1218
UN	286	.	Xen36_31	1	1
UN	287	.	Xen36_32	1019	1019
UN	288	.	Xen36_33	663	668
UN	289	.	Xen36_4	1	1
UN	290	.	Xen36_4	214478	214478
UN	291	.	Xen36_4	214548	214555
UN	292	.	Xen36_5	1	1
UN	293	.	Xen36_5	192871	192873
UN	294	.	Xen36_6	1	1
UN	295	.	Xen36_6	167254	167254
UN	296	.	Xen36_6	167257	167259
UN	297	.	Xen36_7	1	6
UN	298	.	Xen36_7	133618	133618
UN	299	.	Xen36_8	1	8
UN	300	.	Xen36_8	10	10
UN	301	.	Xen36_8	127588	127589
UN	302	.	Xen36_9	1	8